python · 23a24b5aeb12927074c30613708bebc2e9c03674 · arbor-sim / arbor

This PR adds a bunch of high-level docs for concepts related to single cell models.
  * morphologies
  * labels (region and locset expressions)
  * mechanisms
  * cable cells

It adds some python scripts to the `doc` path, which are called during documentation building to generate images of cell morphologies, regions and locsets that are generated in a separate script that uses the Arbor Python API.

The docs are not complete: the cable cell and mechanism docs are unfinished, and the tutorial section needs to build on these concepts to give more detailed step by step examples.

23a24b5a

Name	Last commit	Last update
..
example
test
tutorial
pybind11 @ e2b884c3
CMakeLists.txt
__init__.py
cells.cpp
cells.hpp
config.cpp
context.cpp
context.hpp
conversion.hpp
domain_decomposition.cpp
error.cpp
error.hpp
event_generator.cpp
event_generator.hpp
flat_cell_builder.cpp
identifiers.cpp
mechanism.cpp
morph_parse.cpp
morph_parse.hpp
morphology.cpp
mpi.cpp
mpi.hpp
profiler.cpp
pyarb.cpp
readme.md
recipe.cpp
recipe.hpp
s_expr.cpp
s_expr.hpp
sampling.cpp
schedule.cpp
schedule.hpp
setup.py
simulation.cpp
single_cell_model.cpp
spikes.cpp
strprintf.hpp

readme.md