Issue in reproducing figures
Created by: golosio
in the directory figures/Schmidt2018_dyn, after setting LOAD_ORIGINAL_DATA = False in all python scripts and in the Snakefile, and setting apptopriately the variable chu2014_path in helpers.py, running $ snakemake I got the error: TypeError in line 94 of /home/golosio/multi-area-model/multi-area-model/figures/Schmidt2018_dyn/Snakefile: join() argument must be str or bytes, not 'list' File "/home/golosio/multi-area-model/multi-area-model/figures/Schmidt2018_dyn/Snakefile", line 94, in File "/usr/lib/python3.7/posixpath.py", line 94, in join File "/usr/lib/python3.7/genericpath.py", line 153, in _check_arg_types
Apparently, ifin the Snakefile I replace
os.path.join(DATA_DIR, SIM_LABELS['Fig3'], ...
with
os.path.join(DATA_DIR, SIM_LABELS['Fig3'][0], ...
in all places where it occurs, the previous error does not appear, however I receive another error:
Building DAG of jobs...
MissingInputException in line 37 of /home/golosio/multi-area-model/multi-area-model/figures/Schmidt2018_dyn/Snakefile_preprocessing:
Missing input files for rule pop_rates:
/home/golosio/multi-area-model/data/157be7f2609cd1843099e7a6b4e8b218/recordings/spikes_VIP_5E.npy
/home/golosio/multi-area-model/data/157be7f2609cd1843099e7a6b4e8b218/recordings/spikes_V1_6E.npy
......