From ff678275d628afcfc625dbcc84cc93b9f0d61821 Mon Sep 17 00:00:00 2001
From: Xiao Gui <xgui3783@gmail.com>
Date: Thu, 7 Jun 2018 17:55:57 +0200
Subject: [PATCH] added pagination, panel, databrowser fileviewer, charts,
improved functionality existing components
---
package-lock.json | 64 ++++++++
package.json | 4 +
src/atlasViewer/atlasViewer.component.ts | 85 +++++++++-
.../atlasViewer.dataService.service.ts | 11 ++
src/atlasViewer/atlasViewer.style.css | 26 ++-
src/atlasViewer/atlasViewer.template.html | 28 +++-
src/components/components.module.ts | 14 +-
src/components/hoverableBlock.directive.ts | 4 +-
.../pagination/pagination.component.ts | 58 +++++++
.../pagination/pagination.style.css | 73 +++++++++
.../pagination/pagination.template.html | 48 ++++++
src/components/panel/panel.component.ts | 27 ++++
src/components/panel/panel.style.css | 48 ++++++
src/components/panel/panel.template.html | 30 ++++
src/components/tree/tree.component.ts | 28 +++-
src/components/tree/tree.style.css | 21 +--
src/components/tree/tree.template.html | 8 +-
src/layouts/floating/floating.component.ts | 16 ++
src/layouts/floating/floating.style.css | 15 ++
src/layouts/floating/floating.template.html | 2 +
src/layouts/layout.module.ts | 5 +
src/main.module.ts | 7 +-
src/main.ts | 2 +
src/res/ext/allAggregatedData.json | 80 ++++++++++
src/res/ext/dartboardAggregatedData.json | 1 +
src/res/ext/dwmAggregatedData.json | 1 +
src/res/ext/pmapsAggregatedData.json | 1 +
src/res/ext/receptorAggregatedData.json | 1 +
src/res/ext/swmAggregatedData.json | 1 +
src/services/stateStore.service.ts | 93 +++++++++--
src/ui/banner/banner.component.ts | 14 +-
src/ui/banner/banner.style.css | 2 +-
src/ui/banner/banner.template.html | 1 +
src/ui/databrowser/databrowser.component.ts | 138 ++++++++++++++++
src/ui/databrowser/databrowser.style.css | 53 ++++++
src/ui/databrowser/databrowser.template.html | 87 ++++++++++
src/ui/fileviewer/chart.interface.ts | 74 +++++++++
src/ui/fileviewer/fileviewer.component.ts | 75 +++++++++
src/ui/fileviewer/fileviewer.style.css | 10 ++
src/ui/fileviewer/fileviewer.template.html | 73 +++++++++
.../fileviewer/line/line.chart.component.ts | 149 +++++++++++++++++
src/ui/fileviewer/line/line.chart.style.css | 5 +
.../fileviewer/line/line.chart.template.html | 17 ++
.../fileviewer/radar/radar.chart.component.ts | 151 ++++++++++++++++++
src/ui/fileviewer/radar/radar.chart.style.css | 5 +
.../radar/radar.chart.template.html | 17 ++
.../nehubaContainer.component.ts | 57 +++++++
.../nehubaContainer/nehubaContainer.style.css | 47 ++++++
.../nehubaContainer.template.html | 35 +++-
.../nehubaViewer/nehubaViewer.component.ts | 134 +++++++++++++---
src/ui/ui.module.ts | 33 +++-
src/util/pipes/copyProperty.pipe.ts | 16 ++
src/util/pipes/filterDataEntries.pipe.ts | 15 ++
.../pipes/filterDataEntriesByType.pipe.ts | 13 ++
src/util/pipes/filterNameBySearch.pipe.ts | 15 ++
.../pipes/filterRegionDataEntries.pipe.ts | 15 ++
src/util/pipes/getUniqueProperty.pipe.ts | 18 +++
.../pipes/groupDataEntriesByRegion.pipe.ts | 48 ++++++
src/util/pipes/pagination.pipe.ts | 15 ++
.../pipes/pathToNestedChildren.pipe.spec.ts | 3 +
src/util/pipes/pathToNestedChildren.pipe.ts | 110 +++++++++++++
61 files changed, 2177 insertions(+), 70 deletions(-)
create mode 100644 src/atlasViewer/atlasViewer.dataService.service.ts
create mode 100644 src/components/pagination/pagination.component.ts
create mode 100644 src/components/pagination/pagination.style.css
create mode 100644 src/components/pagination/pagination.template.html
create mode 100644 src/components/panel/panel.component.ts
create mode 100644 src/components/panel/panel.style.css
create mode 100644 src/components/panel/panel.template.html
create mode 100644 src/layouts/floating/floating.component.ts
create mode 100644 src/layouts/floating/floating.style.css
create mode 100644 src/layouts/floating/floating.template.html
create mode 100644 src/res/ext/allAggregatedData.json
create mode 100644 src/res/ext/dartboardAggregatedData.json
create mode 100644 src/res/ext/dwmAggregatedData.json
create mode 100644 src/res/ext/pmapsAggregatedData.json
create mode 100644 src/res/ext/receptorAggregatedData.json
create mode 100644 src/res/ext/swmAggregatedData.json
create mode 100644 src/ui/databrowser/databrowser.component.ts
create mode 100644 src/ui/databrowser/databrowser.style.css
create mode 100644 src/ui/databrowser/databrowser.template.html
create mode 100644 src/ui/fileviewer/chart.interface.ts
create mode 100644 src/ui/fileviewer/fileviewer.component.ts
create mode 100644 src/ui/fileviewer/fileviewer.style.css
create mode 100644 src/ui/fileviewer/fileviewer.template.html
create mode 100644 src/ui/fileviewer/line/line.chart.component.ts
create mode 100644 src/ui/fileviewer/line/line.chart.style.css
create mode 100644 src/ui/fileviewer/line/line.chart.template.html
create mode 100644 src/ui/fileviewer/radar/radar.chart.component.ts
create mode 100644 src/ui/fileviewer/radar/radar.chart.style.css
create mode 100644 src/ui/fileviewer/radar/radar.chart.template.html
create mode 100644 src/util/pipes/copyProperty.pipe.ts
create mode 100644 src/util/pipes/filterDataEntries.pipe.ts
create mode 100644 src/util/pipes/filterDataEntriesByType.pipe.ts
create mode 100644 src/util/pipes/filterNameBySearch.pipe.ts
create mode 100644 src/util/pipes/filterRegionDataEntries.pipe.ts
create mode 100644 src/util/pipes/getUniqueProperty.pipe.ts
create mode 100644 src/util/pipes/groupDataEntriesByRegion.pipe.ts
create mode 100644 src/util/pipes/pagination.pipe.ts
create mode 100644 src/util/pipes/pathToNestedChildren.pipe.spec.ts
create mode 100644 src/util/pipes/pathToNestedChildren.pipe.ts
diff --git a/package-lock.json b/package-lock.json
index e5847f127..0706055de 100644
--- a/package-lock.json
+++ b/package-lock.json
@@ -301,6 +301,12 @@
"integrity": "sha512-ONhaKPIufzzrlNbqtWFFd+jlnemX6lJAgq9ZeiZtS7I1PIf/la7CW4m83rTXRnVnsMbW2k56pGYu7AUFJD9Pow==",
"dev": true
},
+ "@types/chart.js": {
+ "version": "2.7.20",
+ "resolved": "https://registry.npmjs.org/@types/chart.js/-/chart.js-2.7.20.tgz",
+ "integrity": "sha512-9vriJW2C2Ps7jILfzNio+7xPcy0Lu8jfc/FykmTHBIClunENEjeEGjnM4NMhg6uSJ+3eGyc3sq681ouizztmXw==",
+ "dev": true
+ },
"@types/webpack-env": {
"version": "1.13.6",
"resolved": "https://registry.npmjs.org/@types/webpack-env/-/webpack-env-1.13.6.tgz",
@@ -2058,6 +2064,43 @@
"integrity": "sha1-tUc7M9yXxCTl2Y3IfVXU2KKci/I=",
"dev": true
},
+ "chart.js": {
+ "version": "2.7.2",
+ "resolved": "https://registry.npmjs.org/chart.js/-/chart.js-2.7.2.tgz",
+ "integrity": "sha512-90wl3V9xRZ8tnMvMlpcW+0Yg13BelsGS9P9t0ClaDxv/hdypHDr/YAGf+728m11P5ljwyB0ZHfPKCapZFqSqYA==",
+ "dev": true,
+ "requires": {
+ "chartjs-color": "2.2.0",
+ "moment": "2.22.2"
+ }
+ },
+ "chartjs-color": {
+ "version": "2.2.0",
+ "resolved": "https://registry.npmjs.org/chartjs-color/-/chartjs-color-2.2.0.tgz",
+ "integrity": "sha1-hKL7dVeH7YXDndbdjHsdiEKbrq4=",
+ "dev": true,
+ "requires": {
+ "chartjs-color-string": "0.5.0",
+ "color-convert": "0.5.3"
+ },
+ "dependencies": {
+ "color-convert": {
+ "version": "0.5.3",
+ "resolved": "https://registry.npmjs.org/color-convert/-/color-convert-0.5.3.tgz",
+ "integrity": "sha1-vbbGnOZg+t/+CwAHzER+G59ygr0=",
+ "dev": true
+ }
+ }
+ },
+ "chartjs-color-string": {
+ "version": "0.5.0",
+ "resolved": "https://registry.npmjs.org/chartjs-color-string/-/chartjs-color-string-0.5.0.tgz",
+ "integrity": "sha512-amWNvCOXlOUYxZVDSa0YOab5K/lmEhbFNKI55PWc4mlv28BDzA7zaoQTGxSBgJMHIW+hGX8YUrvw/FH4LyhwSQ==",
+ "dev": true,
+ "requires": {
+ "color-name": "1.1.3"
+ }
+ },
"chokidar": {
"version": "2.0.3",
"resolved": "https://registry.npmjs.org/chokidar/-/chokidar-2.0.3.tgz",
@@ -6353,6 +6396,12 @@
"lodash.isarray": "3.0.4"
}
},
+ "lodash.merge": {
+ "version": "4.6.1",
+ "resolved": "https://registry.npmjs.org/lodash.merge/-/lodash.merge-4.6.1.tgz",
+ "integrity": "sha512-AOYza4+Hf5z1/0Hztxpm2/xiPZgi/cjMqdnKTUWTBSKchJlxXXuUSxCCl8rJlf4g6yww/j6mA8nC8Hw/EZWxKQ==",
+ "dev": true
+ },
"lodash.restparam": {
"version": "3.6.1",
"resolved": "https://registry.npmjs.org/lodash.restparam/-/lodash.restparam-3.6.1.tgz",
@@ -6930,6 +6979,12 @@
"minimist": "0.0.8"
}
},
+ "moment": {
+ "version": "2.22.2",
+ "resolved": "https://registry.npmjs.org/moment/-/moment-2.22.2.tgz",
+ "integrity": "sha1-PCV/mDn8DpP/UxSWMiOeuQeD/2Y=",
+ "dev": true
+ },
"move-concurrently": {
"version": "1.0.1",
"resolved": "https://registry.npmjs.org/move-concurrently/-/move-concurrently-1.0.1.tgz",
@@ -7038,6 +7093,15 @@
"integrity": "sha1-yobR/ogoFpsBICCOPchCS524NCw=",
"dev": true
},
+ "ng2-charts": {
+ "version": "1.6.0",
+ "resolved": "https://registry.npmjs.org/ng2-charts/-/ng2-charts-1.6.0.tgz",
+ "integrity": "sha512-9w0WH69x5/nuqC1og2WaY39NbaBqTGIP1+5gZaH7/KPN6UEPonNg/pYnsIVklLj1DWPWXKa8+XXIJZ1jy5nLxg==",
+ "dev": true,
+ "requires": {
+ "chart.js": "2.7.2"
+ }
+ },
"ngx-bootstrap": {
"version": "3.0.0",
"resolved": "https://registry.npmjs.org/ngx-bootstrap/-/ngx-bootstrap-3.0.0.tgz",
diff --git a/package.json b/package.json
index bafa12c37..fb08407f4 100644
--- a/package.json
+++ b/package.json
@@ -23,11 +23,15 @@
"@angular/platform-browser-dynamic": "^6.0.3",
"@ngrx/store": "^6.0.1",
"@ngtools/webpack": "^6.0.5",
+ "@types/chart.js": "^2.7.20",
"@types/webpack-env": "^1.13.6",
"angular2-template-loader": "^0.6.2",
+ "chart.js": "^2.7.2",
"core-js": "^2.5.6",
"file-loader": "^1.1.11",
"html-webpack-plugin": "^3.2.0",
+ "lodash.merge": "^4.6.1",
+ "ng2-charts": "^1.6.0",
"ngx-bootstrap": "^3.0.0",
"raw-loader": "^0.5.1",
"reflect-metadata": "^0.1.12",
diff --git a/src/atlasViewer/atlasViewer.component.ts b/src/atlasViewer/atlasViewer.component.ts
index 26e3f7809..e5b7633a1 100644
--- a/src/atlasViewer/atlasViewer.component.ts
+++ b/src/atlasViewer/atlasViewer.component.ts
@@ -1,6 +1,6 @@
-import { Component, HostBinding } from "@angular/core";
+import { Component, HostBinding, ViewChild, ViewContainerRef, AfterViewInit } from "@angular/core";
import { Store, select } from "@ngrx/store";
-import { ViewerStateInterface, FETCHED_TEMPLATES, safeFilter } from "../services/stateStore.service";
+import { ViewerStateInterface, FETCHED_TEMPLATES, safeFilter, Property, FETCHED_METADATA, FETCHED_DATAENTRIES, DataEntry } from "../services/stateStore.service";
import { Observable } from "rxjs";
import { map } from "rxjs/operators";
@@ -12,11 +12,13 @@ import { map } from "rxjs/operators";
]
})
-export class AtlasViewer{
+export class AtlasViewer implements AfterViewInit{
@HostBinding('attr.darktheme')
darktheme : boolean = false
+ @ViewChild('sidecontent',{read:ViewContainerRef}) sideContent : ViewContainerRef
+
selectedTemplate$ : Observable<any>
constructor(private store : Store<ViewerStateInterface>){
@@ -53,4 +55,81 @@ export class AtlasViewer{
this.selectedTemplate$.subscribe(template=>this.darktheme = template.useTheme === 'dark')
}
+
+ ngAfterViewInit(){
+
+ const meta = 'res/json/allAggregatedData.json'
+ const urls = [
+ 'res/json/receptorAggregatedData.json',
+ 'res/json/pmapsAggregatedData.json',
+ 'res/json/dwmAggregatedData.json',
+ 'res/json/swmAggregatedData.json',
+ 'res/json/dartboardAggregatedData.json'
+ ]
+
+ const dispatchData = (arr:DataEntry[][]) =>{
+ this.store.dispatch({
+ type : FETCHED_DATAENTRIES,
+ fetchedDataEntries : arr.reduce((acc,curr)=>acc.concat(curr),[])
+ })
+ }
+
+ const fetchData = (parcellationName : string) => {
+ if(parcellationName == 'JuBrain Cytoarchitectonic Atlas'){
+ Promise.all([
+ fetch('res/json/pmapsAggregatedData.json').then(res=>res.json()),
+ fetch('res/json/receptorAggregatedData.json').then(res=>res.json()),
+ ])
+ .then(arr=>dispatchData(arr))
+ .catch(console.warn)
+ }
+ else if (parcellationName == 'Fibre Bundle Atlas - Short Bundle'){
+ Promise.all([fetch('res/json/swmAggregatedData.json').then(res=>res.json())])
+ .then(arr=>dispatchData(arr))
+ .catch(console.warn)
+
+ }else if (parcellationName == 'Fibre Bundle Atlas - Long Bundle'){
+
+ Promise.all([fetch('res/json/dwmAggregatedData.json').then(res=>res.json())])
+ .then(arr=>dispatchData(arr))
+ .catch(console.warn)
+ }
+ else{
+ dispatchData([])
+ }
+ }
+
+ fetch(meta)
+ .then(res=>res.json())
+ .then(metadata=>{
+ const data = metadata.reduce((acc:[string,Map<string,{properties:Property}>][],curr:any)=>{
+ const idx = acc.findIndex((it)=>it[0]===curr[0].targetParcellation)
+ return idx >= 0 ?
+ acc.map((it,i)=> i === idx ? [it[0], it[1].set(curr[0].datasetName,curr[1])] : it ) :
+ acc.concat([[ curr[0].targetParcellation , new Map([[curr[0].datasetName , curr[1]]]) ]])
+
+ /* [[ curr[0].targetParcellation , [ curr[0].datasetName , curr[1]] ]] */
+ },[] as [string,Map<string,{properties:Property}>][])
+
+ this.store.dispatch({
+ type : FETCHED_METADATA,
+ fetchedMetadataMap : new Map(data)
+ })
+
+ })
+ .catch(console.error)
+
+ this.store.pipe(
+ select('viewerState'),
+ safeFilter('parcellationSelected'),
+ map(({parcellationSelected})=>(parcellationSelected.name))
+ )
+ .subscribe(fetchData)
+ this.store.pipe(
+ select('newViewer'),
+ safeFilter('parcellationSelected'),
+ map(({parcellationSelected})=>(parcellationSelected.name))
+ )
+ .subscribe(fetchData)
+ }
}
\ No newline at end of file
diff --git a/src/atlasViewer/atlasViewer.dataService.service.ts b/src/atlasViewer/atlasViewer.dataService.service.ts
new file mode 100644
index 000000000..6e3f6a54d
--- /dev/null
+++ b/src/atlasViewer/atlasViewer.dataService.service.ts
@@ -0,0 +1,11 @@
+import { Injectable } from "@angular/core";
+import { Store } from "@ngrx/store";
+import { ViewerStateInterface } from "../services/stateStore.service";
+
+
+@Injectable()
+export class AtlasViewerDataService{
+ constructor(private store : Store<ViewerStateInterface>){
+
+ }
+}
\ No newline at end of file
diff --git a/src/atlasViewer/atlasViewer.style.css b/src/atlasViewer/atlasViewer.style.css
index ef62a1d3c..33605fc7c 100644
--- a/src/atlasViewer/atlasViewer.style.css
+++ b/src/atlasViewer/atlasViewer.style.css
@@ -5,6 +5,11 @@
height:100%;
}
+:host[darktheme="true"]
+{
+ background-color:black;
+}
+
layout-mainside
{
width:100%;
@@ -28,10 +33,29 @@ ui-nehuba-container
atlas-banner
{
- z-index:3;
+ z-index:5;
position:absolute;
top : 1em;
left: 1em;
width:100%;
+}
+
+div[databrowserheading]
+{
+ font-size:110%;
+ padding : 0.5em 0.7em;
+}
+panel[databrowserpanel]
+{
+ display:block;
+ width:300px;
+ overflow-x:hidden;
+}
+
+div[sidecontent]
+{
+ height:100%;
+ overflow-y:auto;
+ overflow-x:hidden;
}
\ No newline at end of file
diff --git a/src/atlasViewer/atlasViewer.template.html b/src/atlasViewer/atlasViewer.template.html
index bd04793fa..e06aeee30 100644
--- a/src/atlasViewer/atlasViewer.template.html
+++ b/src/atlasViewer/atlasViewer.template.html
@@ -4,10 +4,30 @@
</ui-nehuba-container>
<atlas-banner>
-
</atlas-banner>
+
+ <layout-floating-container
+ zIndex = "4">
+ </layout-floating-container>
</div>
- <div sidecontent>
- SIDECONTENT
+ <div
+ sidecontent>
+ <ng-template #sideContent>
+
+ </ng-template>
</div>
-</layout-mainside>
\ No newline at end of file
+</layout-mainside>
+
+<ng-template #databrowser>
+ <panel
+ databrowserpanel
+ [bodyCollapsable] = "true">
+ <div databrowserheading heading>
+ Data Browser
+ </div>
+ <div databrowserbody body>
+ <data-browser>
+ </data-browser>
+ </div>
+ </panel>
+</ng-template>
\ No newline at end of file
diff --git a/src/components/components.module.ts b/src/components/components.module.ts
index e064e030b..b3c41153a 100644
--- a/src/components/components.module.ts
+++ b/src/components/components.module.ts
@@ -12,6 +12,9 @@ import { BrowserModule } from '@angular/platform-browser';
import { HoverableBlockDirective } from './hoverableBlock.directive';
import { DropdownComponent } from './dropdown/dropdown.component';
import { TreeComponent } from './tree/tree.component';
+import { PanelComponent } from './panel/panel.component';
+import { PaginationComponent } from './pagination/pagination.component';
+import { SearchResultPaginationPipe } from '../util/pipes/pagination.pipe';
@NgModule({
imports : [
@@ -26,22 +29,29 @@ import { TreeComponent } from './tree/tree.component';
ReadmoreComponent,
DropdownComponent,
TreeComponent,
+ PanelComponent,
+ PaginationComponent,
/* directive */
HoverableBlockDirective,
/* pipes */
- SafeHtmlPipe
+ SafeHtmlPipe,
+ SearchResultPaginationPipe
],
exports : [
MarkdownDom,
ReadmoreComponent,
DropdownComponent,
TreeComponent,
+ PanelComponent,
+ PaginationComponent,
+
+ SearchResultPaginationPipe,
HoverableBlockDirective,
- ComponentsExample
+ ComponentsExample,
]
})
diff --git a/src/components/hoverableBlock.directive.ts b/src/components/hoverableBlock.directive.ts
index c43eb65fb..e05dc260d 100644
--- a/src/components/hoverableBlock.directive.ts
+++ b/src/components/hoverableBlock.directive.ts
@@ -16,7 +16,7 @@ import { DomSanitizer } from "@angular/platform-browser";
export class HoverableBlockDirective{
@HostBinding('style.opacity')
- opacity : number = 0.8
+ opacity : number = 0.9
@HostBinding('style.transform')
transform = this.sanitizer.bypassSecurityTrustStyle(`translateY(0px)`)
@@ -33,7 +33,7 @@ export class HoverableBlockDirective{
@HostListener('mouseleave')
onmouseleave(){
- this.opacity = 0.8
+ this.opacity = 0.9
this.boxShadow = this.sanitizer.bypassSecurityTrustStyle(`0 4px 6px 0 rgba(5,5,5,0.1)`)
this.transform = this.sanitizer.bypassSecurityTrustStyle(`translateY(0px)`)
}
diff --git a/src/components/pagination/pagination.component.ts b/src/components/pagination/pagination.component.ts
new file mode 100644
index 000000000..fc962a2ae
--- /dev/null
+++ b/src/components/pagination/pagination.component.ts
@@ -0,0 +1,58 @@
+import { Component, Input, Output, EventEmitter } from '@angular/core'
+
+@Component({
+ selector : 'pagination-component',
+ templateUrl : './pagination.template.html',
+ styleUrls : [
+ './pagination.style.css'
+ ]
+})
+
+export class PaginationComponent{
+ @Input() total : number = 0
+ @Input() hitsPerPage : number = 15
+ @Input() currentPage : number = 0
+
+ @Output() paginationChange : EventEmitter<number> = new EventEmitter()
+
+ goto(pgnum:number){
+ const emitValue = pgnum < 0 ?
+ 0 :
+ pgnum >= Math.ceil(this.total / this.hitsPerPage) ?
+ Math.ceil(this.total / this.hitsPerPage) - 1 :
+ pgnum
+
+ this.paginationChange.emit(emitValue)
+ }
+
+ gotoFirst(){
+ this.goto(0)
+ }
+
+ gotoLast(){
+ const num = Math.floor(this.total / this.hitsPerPage) + 1
+ this.goto(num)
+ }
+
+ get getPagination(){
+ return Array.from(Array(Math.ceil(this.total / this.hitsPerPage)).keys()).filter((this.hidePagination).bind(this))
+ }
+
+ get getPageLowerBound(){
+ return this.currentPage * this.hitsPerPage + 1
+ }
+
+ get getPageUpperBound(){
+ return Math.min( ( this.currentPage + 1 ) * this.hitsPerPage , this.total )
+ }
+
+ hidePagination(idx:number){
+
+ const correctedPagination = this.currentPage < 2 ?
+ 2 :
+ this.currentPage > (Math.ceil(this.total / this.hitsPerPage) - 3) ?
+ Math.ceil(this.total / this.hitsPerPage) - 3 :
+ this.currentPage
+ return (Math.abs(idx-correctedPagination) < 3)
+ }
+}
\ No newline at end of file
diff --git a/src/components/pagination/pagination.style.css b/src/components/pagination/pagination.style.css
new file mode 100644
index 000000000..2b06f6363
--- /dev/null
+++ b/src/components/pagination/pagination.style.css
@@ -0,0 +1,73 @@
+div.pagination-container
+{
+ padding:0.5em 0;
+ display:flex;
+ flex-direction: column;
+ align-items: center;
+}
+
+:host-context([darktheme="true"]) div.pagination-container
+{
+ background-color:rgba(30,30,30,0.9);
+ color:rgba(240,240,240,0.9);
+}
+
+div.btn
+{
+ border:none;
+ position : relative;
+ cursor:default;
+ transition : transform 0.1s ease;
+}
+
+div.btn:hover
+{
+ transform: translateY(-2%);
+}
+
+div.btn:before
+{
+ content : ' ';
+ position : absolute;
+ top:0;
+ left:0;
+ width : 100%;
+ height : 100%;
+ pointer-events: none;
+ background-color : rgba(128,128,128,1);
+ opacity: 0.0;
+ transition : opacity 0.1s ease;
+}
+
+div.btn:hover:before
+{
+ opacity : 0.3;
+}
+
+:host-context([darktheme="true"]) div.btn.btn-default
+{
+ background-color:rgba(128,128,128,0.5);
+ color:rgba(240,240,240,0.9);
+}
+
+div.btn.btn-primary
+{
+ transform:translateY(3%);
+ position : relative;
+}
+
+div.btn.btn-primary:before
+{
+ position : absolute;
+ content : ' ';
+ left:0;
+ top:0;
+
+ width:100%;
+ height:100%;
+
+ background-color : black;
+ opacity : 0.1;
+
+ pointer-events: none;
+}
\ No newline at end of file
diff --git a/src/components/pagination/pagination.template.html b/src/components/pagination/pagination.template.html
new file mode 100644
index 000000000..cb53156b2
--- /dev/null
+++ b/src/components/pagination/pagination.template.html
@@ -0,0 +1,48 @@
+<div class = "pagination-container">
+ <div class = "btn-group">
+
+ <div
+ class = "default-control btn btn-default btn-sm"
+ (click)="gotoFirst()"
+ >
+
+ <i class = "glyphicon glyphicon-fast-backward"></i>
+ </div>
+
+ <div
+ class = "btn btn-default btn-sm"
+ (click)="goto(currentPage - 1)"
+ >
+ <i class = "glyphicon glyphicon-step-backward"></i>
+ </div>
+
+ <div
+ (click)="goto(pageNum)"
+ [ngClass]="{'btn-primary':currentPage == pageNum}"
+ *ngFor = "let pageNum of getPagination"
+ class = "pagination-control btn btn-default btn-sm"
+ >
+ {{ pageNum + 1 }}
+ </div>
+
+ <div
+ class = "btn btn-default btn-sm"
+ (click)="goto(currentPage + 1)"
+ >
+ <i class = "glyphicon glyphicon-step-forward"></i>
+ </div>
+ <div
+ class = "btn btn-default btn-sm"
+ (click)="gotoLast()"
+ >
+ <i class = "glyphicon glyphicon-fast-forward"></i>
+ </div>
+
+ </div>
+ <div *ngIf = "total > 0" class = "pagination-summary">
+ showing {{ getPageLowerBound }} - {{ getPageUpperBound }} out of {{ total }}
+ </div>
+ <div *ngIf = "total == 0" class = "pagination-summary">
+ no results
+ </div>
+</div>
\ No newline at end of file
diff --git a/src/components/panel/panel.component.ts b/src/components/panel/panel.component.ts
new file mode 100644
index 000000000..ed8112978
--- /dev/null
+++ b/src/components/panel/panel.component.ts
@@ -0,0 +1,27 @@
+import { Component, Input, ChangeDetectionStrategy } from "@angular/core";
+
+@Component({
+ selector : 'panel',
+ templateUrl : './panel.template.html',
+ styleUrls : [
+ `./panel.style.css`
+ ]
+})
+
+export class PanelComponent{
+
+ @Input() showHeading : boolean = true
+ @Input() showBody : boolean = true
+ @Input() showFooter : boolean = false
+
+ @Input() collapseBody : boolean = false
+ @Input() bodyCollapsable : boolean = false
+
+ toggleCollapseBody(event:Event){
+ if(this.bodyCollapsable){
+ this.collapseBody = !this.collapseBody
+ }
+ event.stopPropagation()
+ event.preventDefault()
+ }
+}
\ No newline at end of file
diff --git a/src/components/panel/panel.style.css b/src/components/panel/panel.style.css
new file mode 100644
index 000000000..9c5475548
--- /dev/null
+++ b/src/components/panel/panel.style.css
@@ -0,0 +1,48 @@
+:host
+{
+ font-size:92%;
+}
+
+.panel
+{
+ border-radius : 0;
+ border:none;
+ box-shadow: 0px 4px 16px -4px rgba(0,0,0,0.2);
+ margin:0;
+}
+
+.panel > .panel-heading
+{
+ border-radius : 0;
+ padding: 0;
+ margin:0;
+ border:none;
+}
+
+.panel > .panel-body,
+.panel > .panel-footer
+{
+ border:none;
+}
+
+.panel > .panel-body
+{
+ padding: 0;
+}
+
+div.panel
+{
+ background:none;
+}
+
+:host-context([darktheme="true"]) div.panel-heading
+{
+ background-color:rgba(45,45,45,0.9);
+ color:rgba(255,255,255,0.9);
+}
+
+:host-context([darktheme="true"]) div.panel-body
+{
+ color:rgba(255,255,255,0.9);
+ background-color:rgba(45,45,45,0.65);
+}
\ No newline at end of file
diff --git a/src/components/panel/panel.template.html b/src/components/panel/panel.template.html
new file mode 100644
index 000000000..853c6ee70
--- /dev/null
+++ b/src/components/panel/panel.template.html
@@ -0,0 +1,30 @@
+<div class = "panel panel-default">
+ <div
+ *ngIf = "showHeading"
+ class = "panel-heading"
+ (click) = "toggleCollapseBody($event)"
+ hoverable>
+
+ <ng-content select="[heading]">
+ </ng-content>
+
+ </div>
+ <div
+ *ngIf = "showBody"
+ class = "panel-body"
+ [hidden] = "collapseBody">
+
+ <ng-content select="[body]">
+ </ng-content>
+
+ </div>
+ <div
+ *ngIf = "showFooter"
+ [hidden] = "collapseBody"
+ class = "panel-footer">
+
+ <ng-content select="[footer]">
+ </ng-content>
+
+ </div>
+</div>
\ No newline at end of file
diff --git a/src/components/tree/tree.component.ts b/src/components/tree/tree.component.ts
index 50b9bf3cf..081376b31 100644
--- a/src/components/tree/tree.component.ts
+++ b/src/components/tree/tree.component.ts
@@ -1,4 +1,4 @@
-import { Component, Input, Output, EventEmitter } from "@angular/core";
+import { Component, Input, Output, EventEmitter, ViewChildren, QueryList, HostBinding } from "@angular/core";
@Component({
@@ -16,20 +16,23 @@ export class TreeComponent{
}
@Input() renderNode : (item:any)=>string = (item)=>item.name
@Input() findChildren : (item:any)=>any[] = (item)=>item.children
+ @Input() childrenExpanded : boolean = true
- @Input() searchFilter : (item:any)=>boolean | null
+ @Input() searchFilter : (item:any)=>boolean | null = null
@Output() mouseentertree : EventEmitter<any> = new EventEmitter()
@Output() mouseleavetree : EventEmitter<any> = new EventEmitter()
@Output() mouseclicktree : EventEmitter<any> = new EventEmitter()
- public childrenExpanded : boolean = true
+ @ViewChildren(TreeComponent) treeChildren : QueryList<TreeComponent>
get chevronClass():string{
- return this.findChildren(this.inputItem).length > 0 ?
- this.childrenExpanded ?
- 'glyphicon-chevron-down' :
- 'glyphicon-chevron-right' :
+ return this.children ?
+ this.children.length > 0 ?
+ this.childrenExpanded ?
+ 'glyphicon-chevron-down' :
+ 'glyphicon-chevron-right' :
+ 'glyphicon-none' :
'glyphicon-none'
}
@@ -43,4 +46,15 @@ export class TreeComponent{
event.stopPropagation()
event.preventDefault()
}
+
+ get children():any[]{
+ return this.findChildren(this.inputItem)
+ }
+
+ @HostBinding('attr.filterHidden')
+ get visibilityOnFilter():boolean{
+ return (this.searchFilter ?
+ this.searchFilter(this.inputItem) || (this.treeChildren.some(tree=>tree.visibilityOnFilter) ) :
+ true)
+ }
}
\ No newline at end of file
diff --git a/src/components/tree/tree.style.css b/src/components/tree/tree.style.css
index fdf27cdc7..fec01230a 100644
--- a/src/components/tree/tree.style.css
+++ b/src/components/tree/tree.style.css
@@ -1,4 +1,4 @@
-tree:not([hidden])
+tree:not([filterHidden="false"]):not([hidden])
{
display:block;
margin-left:1em;
@@ -23,14 +23,15 @@ div[itemContainer] > [itemName]
white-space: nowrap;
}
-[itemName]:hover
+div[itemContainer] > span[itemName]:hover
{
cursor:default;
+ color:rgba(219, 181, 86,1);
}
/* dashed guiding line */
-tree:not(:last-child) > div[itemMasterContainer]:before
+tree:not([filterHidden="false"]):not(:last-child) > div[itemMasterContainer]:before
{
pointer-events: none;
@@ -42,13 +43,13 @@ tree:not(:last-child) > div[itemMasterContainer]:before
border-left: rgba(255,255,255,1) 1px dashed;
}
-tree:not(:last-child) div[itemMasterContainer] > [itemContainer]
+tree:not([filterHidden="false"]):not(:last-child) div[itemMasterContainer] > [itemContainer]
{
position:relative;
}
-tree:not(:last-child) div[itemMasterContainer] > [itemContainer]:before
+tree:not([filterHidden="false"]):not(:last-child) div[itemMasterContainer] > [itemContainer]:before
{
pointer-events: none;
content : '';
@@ -60,12 +61,12 @@ tree:not(:last-child) div[itemMasterContainer] > [itemContainer]:before
z-index: 0;
}
-tree:last-child div[itemMasterContainer] > [itemContainer]
+tree:not([filterHidden="false"]):last-child div[itemMasterContainer] > [itemContainer]
{
position:relative;
}
-tree:last-child div[itemMasterContainer] > [itemContainer]:before
+tree:not([filterHidden="false"]):last-child div[itemMasterContainer] > [itemContainer]:before
{
pointer-events: none;
content : '';
@@ -77,17 +78,17 @@ tree:last-child div[itemMasterContainer] > [itemContainer]:before
z-index: 0;
}
-tree:not(:last-child) div[itemMasterContainer]:before
+tree:not([filterHidden="false"]):not(:last-child) div[itemMasterContainer]:before
{
border-left: rgba(128,128,128,0.6) 1px dashed;
}
-tree:not(:last-child) div[itemMasterContainer] > [itemContainer]:before
+tree:not([filterHidden="false"]):not(:last-child) div[itemMasterContainer] > [itemContainer]:before
{
border-bottom: rgba(128,128,128,0.6) 1px dashed;
}
-tree div[itemMasterContainer]:last-child > [itemContainer]:before
+tree:not([filterHidden="false"]) div[itemMasterContainer]:last-child > [itemContainer]:before
{
border-bottom: rgba(128,128,128,0.6) 1px dashed;
border-left : rgba(128,128,128,0.6) 1px dashed;
diff --git a/src/components/tree/tree.template.html b/src/components/tree/tree.template.html
index 1b0278ba8..c0d71c6a2 100644
--- a/src/components/tree/tree.template.html
+++ b/src/components/tree/tree.template.html
@@ -1,7 +1,8 @@
<div
- (mouseleave)="mouseleavetree.emit(inputItem);handleEv($event)"
- (mouseenter)="mouseentertree.emit(inputItem);handleEv($event)"
- (click)="mouseclicktree.emit(inputItem);handleEv($event)"
+ [hidden] = "!visibilityOnFilter"
+ (mouseleave)="mouseleavetree.emit({inputItem:inputItem,node:this});handleEv($event)"
+ (mouseenter)="mouseentertree.emit({inputItem:inputItem,node:this});handleEv($event)"
+ (click)="mouseclicktree.emit({inputItem:inputItem,node:this});handleEv($event)"
itemMasterContainer>
<div itemContainer>
<i
@@ -18,6 +19,7 @@
<tree
*ngFor = "let child of findChildren(inputItem)"
[hidden] = "!childrenExpanded"
+ [childrenExpanded] = "childrenExpanded"
[inputItem] = "child"
[renderNode]="renderNode"
[searchFilter]="searchFilter"
diff --git a/src/layouts/floating/floating.component.ts b/src/layouts/floating/floating.component.ts
new file mode 100644
index 000000000..9653baccc
--- /dev/null
+++ b/src/layouts/floating/floating.component.ts
@@ -0,0 +1,16 @@
+import { Component, ViewChild, HostBinding, Input } from "@angular/core";
+
+
+@Component({
+ selector : 'layout-floating-container',
+ templateUrl : './floating.template.html',
+ styleUrls : [
+ `./floating.style.css`
+ ]
+})
+
+export class FloatingLayoutContainer{
+ @HostBinding('style.z-index')
+ @Input()
+ zIndex : number = 5
+}
\ No newline at end of file
diff --git a/src/layouts/floating/floating.style.css b/src/layouts/floating/floating.style.css
new file mode 100644
index 000000000..0cb15ee43
--- /dev/null
+++ b/src/layouts/floating/floating.style.css
@@ -0,0 +1,15 @@
+:host
+{
+ position: absolute;
+ top:0;
+ left:0;
+ width:100%;
+ height:100%;
+ display:block;
+ pointer-events: none;
+}
+
+:host *
+{
+ pointer-events: all;
+}
\ No newline at end of file
diff --git a/src/layouts/floating/floating.template.html b/src/layouts/floating/floating.template.html
new file mode 100644
index 000000000..d7b4509bd
--- /dev/null
+++ b/src/layouts/floating/floating.template.html
@@ -0,0 +1,2 @@
+<ng-content>
+</ng-content>
\ No newline at end of file
diff --git a/src/layouts/layout.module.ts b/src/layouts/layout.module.ts
index 6fc53f1f3..4541a74b9 100644
--- a/src/layouts/layout.module.ts
+++ b/src/layouts/layout.module.ts
@@ -3,6 +3,7 @@ import { LayoutMainSide } from "./mainside/mainside.component";
import { LayoutsExample } from "./layoutsExample/layoutsExample.component";
import { BrowserModule } from "@angular/platform-browser";
import { ComponentsModule } from "../components/components.module";
+import { FloatingLayoutContainer } from "./floating/floating.component";
@NgModule({
@@ -12,10 +13,14 @@ import { ComponentsModule } from "../components/components.module";
],
declarations : [
LayoutMainSide,
+ FloatingLayoutContainer,
+
LayoutsExample
],
exports : [
LayoutMainSide,
+ FloatingLayoutContainer,
+
LayoutsExample
]
})
diff --git a/src/main.module.ts b/src/main.module.ts
index 985939357..e635fe641 100644
--- a/src/main.module.ts
+++ b/src/main.module.ts
@@ -6,7 +6,7 @@ import { LayoutModule } from "./layouts/layout.module";
import { Examples } from "./examples/examples.component";
import { AtlasViewer } from "./atlasViewer/atlasViewer.component";
import { StoreModule } from "@ngrx/store";
-import { changeState, newViewer } from "./services/stateStore.service";
+import { viewerState, newViewer, dataStore } from "./services/stateStore.service";
import { AtlasBanner } from "./ui/banner/banner.component";
import { GetNamesPipe } from "./util/pipes/getNames.pipe";
import { CommonModule } from "@angular/common";
@@ -26,8 +26,9 @@ import { PopoverModule } from 'ngx-bootstrap/popover'
PopoverModule.forRoot(),
Serv.forRoot(),
StoreModule.forRoot({
- viewerState : changeState,
- newViewer : newViewer
+ viewerState : viewerState,
+ newViewer : newViewer,
+ dataStore : dataStore
})
],
declarations : [
diff --git a/src/main.ts b/src/main.ts
index 95ac97b44..f9f13fe7c 100644
--- a/src/main.ts
+++ b/src/main.ts
@@ -3,6 +3,8 @@ import 'reflect-metadata'
import { platformBrowserDynamic } from '@angular/platform-browser-dynamic'
import { MainModule } from './main.module';
+import 'chart.js/src/chart.js'
+
const requireAll = (r:any) => {r.keys().forEach(r)}
requireAll(require.context('./res/ext',false, /.json$/))
diff --git a/src/res/ext/allAggregatedData.json b/src/res/ext/allAggregatedData.json
new file mode 100644
index 000000000..e847cafa1
--- /dev/null
+++ b/src/res/ext/allAggregatedData.json
@@ -0,0 +1,80 @@
+[
+ [
+ {
+ "targetParcellation": "JuBrain Cytoarchitectonic Atlas",
+ "datasetName": "Receptor Data"
+ },
+ {
+ "name": "Quantification of Multiple Receptor Distributions for Selected Areas",
+ "properties": {
+ "description": null,
+ "publications": [
+ {
+ "doi": "http://juser.fz-juelich.de/record/23682",
+ "citation": "Zilles, K., Schleicher, A., Palomero-Gallagher, N., Amunts, K. (2002) Quantitative analysis of cyto- and receptor architecture of the human brain. In: /Brain Mapping: The Methods/, J. C. Mazziotta and A. Toga (eds.), USA: Elsevier, 2002, p. 573-602."
+ },
+ {
+ "doi": "https://doi.org/10.1016/j.cortex.2014.07.007",
+ "citation": "Zilles, K.; Bacha-Trams, M.; Palomero-Gallagher, N.; Amunts, K.; Friederici, A.D. (2015) Common molecular basis of the sentence comprehension network revealed by neurotransmitter receptor fingerprints. Cortex, vol 63, pp.79-89."
+ },
+ {
+ "doi": "res/pdf/ReceptorReadme.pdf",
+ "citation": "README.pdf for the receptor data"
+ }
+ ]
+ }
+ }
+ ],
+ [
+ {
+ "targetParcellation": "JuBrain Cytoarchitectonic Atlas",
+ "datasetName": "Cytoarchitectonic Probabilistic Map"
+ },
+ {
+ "name": "Cytoarchitectonic Probabilistic Map",
+ "properties": {
+ "description": "The Jubrain cytoarchitectonic probabilistic maps were developed in the teams of Katrin Amunts and Karl Zilles in Juelich and Duesseldorf (INM-1). Cytoarchitectonic areas were analyzed in histological sections of ten human postmortem brains. The maps are based on image analysis and statistical criteria for localizing areal borders. Cytoarchitectonic maps have been developed during the past 20 years as a joint effort of many doctoral students, post docs and guest scientists. Maps, which have been published, are available for the scientific community.",
+ "publications": [
+ {
+ "doi": "https://doi.org/10.1038/nrn2776",
+ "citation": "Zilles, K., Amunts, K. 2010. Centenary of Brodmann's map--conception and fate. Nat Rev Neurosci. 11(2):139-45"
+ },
+ {
+ "doi": "https://doi.org/10.1016/j.neuroimage.2007.02.037",
+ "citation": "Amunts, K., Schleicher, A., Zilles, K. 2007. Cytoarchitecture of the cerebral cortex--more than localization. Neuroimage. 37(4):1061-5"
+ },
+ {
+ "doi": "http://juser.fz-juelich.de/record/23682",
+ "citation": "Zilles, K., Schleicher, A., Palomero-Gallagher, N., Amunts, K. (2002) Quantitative analysis of cyto- and receptor architecture of the human brain. In: /Brain Mapping: The Methods/, J. C. Mazziotta and A. Toga (eds.), USA: Elsevier, 2002, p. 573-602."
+ }
+ ]
+ }
+ }
+ ],
+ [
+ {
+ "targetParcellation": "Fibre Bundle Atlas - Short Bundle",
+ "datasetName": "Probabilistic Map"
+ },
+ {
+ "name": "Bundle Atlas Probabilistic Map",
+ "properties": {
+ "description": "",
+ "publications": []
+ }
+ }
+ ],
+ [
+ {
+ "targetParcellation": "Fibre Bundle Atlas - Long Bundle",
+ "datasetName": "Probabilistic Map"
+ },
+ {
+ "name": "Bundle Atlas Probabilistic Map",
+ "properties": {
+ "description": "",
+ "publications": []
+ }
+ }
+ ]
+]
\ No newline at end of file
diff --git a/src/res/ext/dartboardAggregatedData.json b/src/res/ext/dartboardAggregatedData.json
new file mode 100644
index 000000000..d2cd9e9d4
--- /dev/null
+++ b/src/res/ext/dartboardAggregatedData.json
@@ -0,0 +1 @@
+[{"type":"Dart board","name":"Dart board","regionName":[],"files":[{"filename":"Dart Board Image Layer","name":"Dart Board over lay","mimetype":"application/nehuba-layer","properties":{"name":"","description":"","publications":[],"associatedRegion":"","associatedParcellation":"Grey/White matter","datasetInfo":""},"url":"precomputed://https://neuroglancer-dev.humanbrainproject.org/precomputed/demos/2018-05_V1_demo","data":{"time series":{"type":"image","source":"precomputed://https://neuroglancer-dev.humanbrainproject.org/precomputed/demos/2018-05_V1_demo","shader":"void main(){float x = toNormalized(getDataValue(0));float r=clamp(8.0/3.0*x,0.0,1.0);float a = clamp(x,0.0,1.0);float g=clamp(8.0/3.0*x-1.0,0.0,1.0);float b=clamp(4.0*x-3.0,0.0,1.0);emitRGB(vec3(r,g,b));}","transform":[[1,0,0,-70856016],[0,1,0,-73200000],[0,0,1,-58967116],[0,0,0,1]]}}}],"targetParcellation":"Grey/White matter"}]
\ No newline at end of file
diff --git a/src/res/ext/dwmAggregatedData.json b/src/res/ext/dwmAggregatedData.json
new file mode 100644
index 000000000..e963af5e6
--- /dev/null
+++ b/src/res/ext/dwmAggregatedData.json
@@ -0,0 +1 @@
+[{"type":"Probabilistic Map","name":"Probabilistic Map for Arcuate_Anterior - Left","regionName":[{"regionName":"Arcuate_Anterior - Left","relationship":"equals"}],"files":[{"filename":"Probabilistic Map for Arcuate_Anterior - Left","name":"Probabilistic Map for Arcuate_Anterior - Left","mimetype":"application/nifti","properties":{"name":null,"description":"","publications":[],"associatedRegion":"Arcuate_Anterior - Left","associatedParcellation":"Fibre Bundle Atlas - Long Bundle","datasetInfo":"MNIColin27_PMap.json"},"url":"https://neuroglancer-dev.humanbrainproject.org/precomputed/Fiber_Bundle/DWM_atlas/left-hemisphere/Probability_Maps/Arcuate_Anterior_Left.nii"}],"targetParcellation":"Fibre Bundle Atlas - Long Bundle"},{"type":"Probabilistic Map","name":"Probabilistic Map for Arcuate - Left","regionName":[{"regionName":"Arcuate - Left","relationship":"equals"}],"files":[{"filename":"Probabilistic Map for Arcuate - Left","name":"Probabilistic Map for Arcuate - Left","mimetype":"application/nifti","properties":{"name":null,"description":"","publications":[],"associatedRegion":"Arcuate - Left","associatedParcellation":"Fibre Bundle Atlas - Long Bundle","datasetInfo":"MNIColin27_PMap.json"},"url":"https://neuroglancer-dev.humanbrainproject.org/precomputed/Fiber_Bundle/DWM_atlas/left-hemisphere/Probability_Maps/Arcuate_Left.nii"}],"targetParcellation":"Fibre Bundle Atlas - Long Bundle"},{"type":"Probabilistic Map","name":"Probabilistic Map for Arcuate_Posterior - Left","regionName":[{"regionName":"Arcuate_Posterior - Left","relationship":"equals"}],"files":[{"filename":"Probabilistic Map for Arcuate_Posterior - Left","name":"Probabilistic Map for Arcuate_Posterior - Left","mimetype":"application/nifti","properties":{"name":null,"description":"","publications":[],"associatedRegion":"Arcuate_Posterior - Left","associatedParcellation":"Fibre Bundle Atlas - Long Bundle","datasetInfo":"MNIColin27_PMap.json"},"url":"https://neuroglancer-dev.humanbrainproject.org/precomputed/Fiber_Bundle/DWM_atlas/left-hemisphere/Probability_Maps/Arcuate_Posterior_Left.nii"}],"targetParcellation":"Fibre Bundle Atlas - Long Bundle"},{"type":"Probabilistic Map","name":"Probabilistic Map for Cingulum_Long - Left","regionName":[{"regionName":"Cingulum_Long - Left","relationship":"equals"}],"files":[{"filename":"Probabilistic Map for Cingulum_Long - Left","name":"Probabilistic Map for Cingulum_Long - Left","mimetype":"application/nifti","properties":{"name":null,"description":"","publications":[],"associatedRegion":"Cingulum_Long - Left","associatedParcellation":"Fibre Bundle Atlas - Long Bundle","datasetInfo":"MNIColin27_PMap.json"},"url":"https://neuroglancer-dev.humanbrainproject.org/precomputed/Fiber_Bundle/DWM_atlas/left-hemisphere/Probability_Maps/Cingulum_Long_Left.nii"}],"targetParcellation":"Fibre Bundle Atlas - Long Bundle"},{"type":"Probabilistic Map","name":"Probabilistic Map for Cingulum_Short - Left","regionName":[{"regionName":"Cingulum_Short - Left","relationship":"equals"}],"files":[{"filename":"Probabilistic Map for Cingulum_Short - Left","name":"Probabilistic Map for Cingulum_Short - Left","mimetype":"application/nifti","properties":{"name":null,"description":"","publications":[],"associatedRegion":"Cingulum_Short - 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diff --git a/src/res/ext/pmapsAggregatedData.json b/src/res/ext/pmapsAggregatedData.json
new file mode 100644
index 000000000..5cf684da0
--- /dev/null
+++ b/src/res/ext/pmapsAggregatedData.json
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diff --git a/src/res/ext/receptorAggregatedData.json b/src/res/ext/receptorAggregatedData.json
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index 000000000..4898c352d
--- /dev/null
+++ b/src/res/ext/receptorAggregatedData.json
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Short Bundle","datasetInfo":"MNIColin27_PMap.json"},"url":"https://neuroglancer-dev.humanbrainproject.org/precomputed/Fiber_Bundle/SWM_atlas/right-hemisphere/Probability_Maps/rh_SM-Ins_0.nii"}],"targetParcellation":"Fibre Bundle Atlas - Short Bundle"}],[{"type":"Probabilistic Map","name":"Probabilistic Map for rh_SP-SM_0","regionName":[{"regionName":"rh_SP-SM_0","relationship":"equals"}],"files":[{"filename":"Probabilistic Map for rh_SP-SM_0","name":"Probabilistic Map for rh_SP-SM_0","mimetype":"application/nifti","properties":{"name":null,"description":"","publications":[],"associatedRegion":"rh_SP-SM_0","associatedParcellation":"Fibre Bundle Atlas - Short Bundle","datasetInfo":"MNIColin27_PMap.json"},"url":"https://neuroglancer-dev.humanbrainproject.org/precomputed/Fiber_Bundle/SWM_atlas/right-hemisphere/Probability_Maps/rh_SP-SM_0.nii"}],"targetParcellation":"Fibre Bundle Atlas - Short Bundle"}],[{"type":"Probabilistic Map","name":"Probabilistic Map for rh_ST-TT_0","regionName":[{"regionName":"rh_ST-TT_0","relationship":"equals"}],"files":[{"filename":"Probabilistic Map for rh_ST-TT_0","name":"Probabilistic Map for rh_ST-TT_0","mimetype":"application/nifti","properties":{"name":null,"description":"","publications":[],"associatedRegion":"rh_ST-TT_0","associatedParcellation":"Fibre Bundle Atlas - Short Bundle","datasetInfo":"MNIColin27_PMap.json"},"url":"https://neuroglancer-dev.humanbrainproject.org/precomputed/Fiber_Bundle/SWM_atlas/right-hemisphere/Probability_Maps/rh_ST-TT_0.nii"}],"targetParcellation":"Fibre Bundle Atlas - Short Bundle"}],[{"type":"Probabilistic Map","name":"Probabilistic Map for rh_Tr-Ins_0","regionName":[{"regionName":"rh_Tr-Ins_0","relationship":"equals"}],"files":[{"filename":"Probabilistic Map for rh_Tr-Ins_0","name":"Probabilistic Map for rh_Tr-Ins_0","mimetype":"application/nifti","properties":{"name":null,"description":"","publications":[],"associatedRegion":"rh_Tr-Ins_0","associatedParcellation":"Fibre Bundle Atlas - Short Bundle","datasetInfo":"MNIColin27_PMap.json"},"url":"https://neuroglancer-dev.humanbrainproject.org/precomputed/Fiber_Bundle/SWM_atlas/right-hemisphere/Probability_Maps/rh_Tr-Ins_0.nii"}],"targetParcellation":"Fibre Bundle Atlas - Short Bundle"}],[{"type":"Probabilistic Map","name":"Probabilistic Map for rh_Tr-SF_0","regionName":[{"regionName":"rh_Tr-SF_0","relationship":"equals"}],"files":[{"filename":"Probabilistic Map for rh_Tr-SF_0","name":"Probabilistic Map for rh_Tr-SF_0","mimetype":"application/nifti","properties":{"name":null,"description":"","publications":[],"associatedRegion":"rh_Tr-SF_0","associatedParcellation":"Fibre Bundle Atlas - Short Bundle","datasetInfo":"MNIColin27_PMap.json"},"url":"https://neuroglancer-dev.humanbrainproject.org/precomputed/Fiber_Bundle/SWM_atlas/right-hemisphere/Probability_Maps/rh_Tr-SF_0.nii"}],"targetParcellation":"Fibre Bundle Atlas - Short Bundle"}]]
\ No newline at end of file
diff --git a/src/services/stateStore.service.ts b/src/services/stateStore.service.ts
index e685d8395..55fb393ce 100644
--- a/src/services/stateStore.service.ts
+++ b/src/services/stateStore.service.ts
@@ -1,14 +1,19 @@
import { Action } from '@ngrx/store'
import { filter } from 'rxjs/operators';
+import { NgAnalyzeModulesHost } from '@angular/compiler';
export const NEWVIEWER = 'NEWVIEWER'
export const FETCHED_TEMPLATES = 'FETCHED_TEMPLATES'
export const SELECT_PARCELLATION = `SELECT_PARCELLATION`
export const SELECT_REGIONS = `SELECT_REGIONS`
+export const LABELIDX_MAP = 'LABELIDX_MAP'
export const CHANGE_NAVIGATION = 'CHANGE_NAVIGATION'
+export const FETCHED_DATAENTRIES = 'FETCHED_DATAENTRIES'
+export const FETCHED_METADATA = 'FETCHED_METADATA'
+
export interface ViewerStateInterface{
fetchedTemplates : any[]
@@ -34,19 +39,34 @@ export interface NewViewerAction extends Action{
selectParcellation :any
}
+export interface DatasetAction extends Action{
+ fetchedDataEntries : DataEntry[]
+ fetchedMetadataMap : Map<string,Map<string,{properties:Property}>>
+}
+
+export interface DataStateInterface{
+ fetchedDataEntries : DataEntry[]
+
+ /**
+ * Map that maps parcellation name to a Map, which maps datasetname to Property Object
+ */
+ fetchedMetadataMap : Map<string,Map<string,{properties:Property}>>
+}
+
export function newViewer(state:any,action:NewViewerAction){
switch(action.type){
case NEWVIEWER:
return Object.assign({},state,{
templateSelected:action.selectTemplate,
- parcellationSelected : action.selectParcellation
+ parcellationSelected : action.selectParcellation,
+ regionsSelected : []
})
default :
return state
}
}
-export function changeState(state:ViewerStateInterface,action:AtlasAction){
+export function viewerState(state:ViewerStateInterface,action:AtlasAction){
switch(action.type){
case FETCHED_TEMPLATES : {
return Object.assign({},state,{fetchedTemplates:action.fetchedTemplate})
@@ -54,26 +74,41 @@ export function changeState(state:ViewerStateInterface,action:AtlasAction){
case CHANGE_NAVIGATION : {
return Object.assign({},state,{navigation : action.changeNavigation})
}
- // case SELECT_TEMPLATE : {
- // /* check for query param */
- // return Object.assign({},state,{
- // templateSelected : action.selectTemplate,
- // parcellationSelected : action.selectTemplate.parcellations[0]
- // })
- // }
case SELECT_PARCELLATION : {
- return Object.assign({},state,{parcellationSelected : action.selectParcellation})
+ return Object.assign({},state,{
+ parcellationSelected : action.selectParcellation,
+ regionsSelected : []
+ })
}
case SELECT_REGIONS : {
return Object.assign({},state,{regionsSelected : action.selectRegions})
}
+ case LABELIDX_MAP : {
+ return Object.assign({},state,{
+ })
+ }
default :
return state
}
}
+export function dataStore(state:any,action:DatasetAction){
+ switch (action.type){
+ case FETCHED_DATAENTRIES: {
+ return Object.assign({},state,{
+ fetchedDataEntries : action.fetchedDataEntries
+ })
+ }
+ case FETCHED_METADATA : {
+ return Object.assign({},state,{
+ fetchedMetadataMap : action.fetchedMetadataMap
+ })
+ }
+ }
+}
+
export function safeFilter(key:string){
- return filter((state:ViewerStateInterface)=>
+ return filter((state:any)=>
typeof state !== 'undefined' &&
typeof state[key] !== 'undefined')
}
@@ -82,4 +117,40 @@ export function extractLabelIdx(region:any):number[]{
return region.children.reduce((acc,item)=>{
return acc.concat(extractLabelIdx(item))
},[]).concat( region.labelIndex ? region.labelIndex : [] )
+}
+
+export interface DataEntry{
+ type : string
+ name : string
+ regionName : {
+ regionName : string,
+ relationship : string
+ }[]
+
+ properties : Property
+
+ files : File[]
+}
+
+export interface File{
+ filename : string
+ name : string
+ mimetype : string
+ url? : string
+ data? : any
+ targetParcellation : string
+}
+
+export interface Property{
+ description : string
+ publications : Publication[]
+}
+
+export interface Publication{
+ doi : string
+ citation : string
+}
+
+export interface DataTypeMetadata{
+
}
\ No newline at end of file
diff --git a/src/ui/banner/banner.component.ts b/src/ui/banner/banner.component.ts
index b9d185fa8..42a930934 100644
--- a/src/ui/banner/banner.component.ts
+++ b/src/ui/banner/banner.component.ts
@@ -3,6 +3,7 @@ import { Store, select } from "@ngrx/store";
import { ViewerStateInterface, safeFilter, SELECT_PARCELLATION, extractLabelIdx, SELECT_REGIONS, NEWVIEWER } from "../../services/stateStore.service";
import { Observable } from "rxjs";
import { map, filter } from "rxjs/operators";
+import { FilterNameBySearch } from "../../util/pipes/filterNameBySearch.pipe";
@Component({
selector : 'atlas-banner',
@@ -78,7 +79,8 @@ export class AtlasBanner{
})
}
- handleClickRegion(region:any){
+ handleClickRegion(obj:any){
+ const region = obj.inputItem
const selectedSet = new Set(extractLabelIdx(region))
const intersection = new Set([...this.selectedRegions.map(r=>r.labelIndex)].filter(v=>selectedSet.has(v)))
@@ -119,6 +121,14 @@ export class AtlasBanner{
return ''
}
+ filterTreeBySearch(node:any):boolean{
+ return this.filterNameBySearchPipe.transform([node.name],this.searchTerm)
+ }
+
+ temp_filterTreeBySearch(node:any):boolean{
+ return
+ }
+
clearRegions(event:Event){
event.stopPropagation()
event.preventDefault()
@@ -127,4 +137,6 @@ export class AtlasBanner{
selectRegions : []
})
}
+
+ filterNameBySearchPipe = new FilterNameBySearch()
}
\ No newline at end of file
diff --git a/src/ui/banner/banner.style.css b/src/ui/banner/banner.style.css
index 972d387fe..30f37e29a 100644
--- a/src/ui/banner/banner.style.css
+++ b/src/ui/banner/banner.style.css
@@ -52,7 +52,7 @@ div[treeContainer]
:host-context([darktheme="true"]) div[treeContainer]
{
background-color:rgba(30,30,30,0.8);
- color:rgba(255,255,255,0.8);
+ color:rgba(255,255,255,1.0);
}
div[hideScrollbarcontainer]
diff --git a/src/ui/banner/banner.template.html b/src/ui/banner/banner.template.html
index e694207f3..2b09f5ad1 100644
--- a/src/ui/banner/banner.template.html
+++ b/src/ui/banner/banner.template.html
@@ -46,6 +46,7 @@
*ngFor = "let child of selectedParcellation.regions"
(mouseclicktree) = "handleClickRegion($event)"
[renderNode]="(displayTreeNode).bind(this)"
+ [searchFilter]="(filterTreeBySearch).bind(this)"
[inputItem]="child">
</tree>
</div>
diff --git a/src/ui/databrowser/databrowser.component.ts b/src/ui/databrowser/databrowser.component.ts
new file mode 100644
index 000000000..2e43a976b
--- /dev/null
+++ b/src/ui/databrowser/databrowser.component.ts
@@ -0,0 +1,138 @@
+import { Component, ChangeDetectionStrategy } from "@angular/core";
+import { Store, select } from "@ngrx/store";
+import { DataStateInterface, Property, safeFilter, DataEntry, File, SELECT_REGIONS } from "../../services/stateStore.service";
+import { map, filter } from "rxjs/operators";
+import { PathToNestedChildren, HasPathProperty } from "../../util/pipes/pathToNestedChildren.pipe";
+import { CopyPropertyPipe } from "../../util/pipes/copyProperty.pipe";
+import { TreeComponent } from "../../components/tree/tree.component";
+
+@Component({
+ selector : 'data-browser',
+ templateUrl : './databrowser.template.html',
+ styleUrls : [
+ `./databrowser.style.css`
+ ]
+})
+
+export class DataBrowserUI{
+
+ hitsPerPage : number = 15
+ currentPage : number = 0
+
+ selectedRegions : any[] = []
+
+ metadataMap : Map<string,Map<string,{properties:Property}>>
+ dataEntries : DataEntry[] = []
+ hideDataTypes : Set<string> = new Set()
+
+ private regionsLabelIndexMap : Map<number,any> = new Map()
+
+ constructor(private store : Store<DataStateInterface>){
+
+ this.store.pipe(
+ select('viewerState'),
+ safeFilter('regionsSelected'),
+ map(state=>state.regionsSelected)
+ )
+ .subscribe(rs=>this.selectedRegions = rs)
+
+ /* TODO may need to unsubscribe later */
+ this.store.pipe(
+ select('dataStore'),
+ safeFilter('fetchedMetadataMap'),
+ map(v=>v.fetchedMetadataMap)
+ )
+ .subscribe(map=>this.metadataMap = map)
+
+ /* TODO may need to unsubscribe later */
+ this.store.pipe(
+ select('dataStore'),
+ safeFilter('fetchedDataEntries'),
+ map(v=>v.fetchedDataEntries)
+ )
+ .subscribe(arr=>(this.dataEntries = arr,this.TEMP()))
+
+ /* TODO may need to unsubscribe later */
+ this.store.pipe(
+ select('newViewer'),
+ filter(state=>typeof state !== 'undefined')
+ )
+ .subscribe(data=>
+ this.handleParcellationSelection(data.parcellationSelected.regions))
+
+ this.store.pipe(
+ select('viewerState'),
+ safeFilter('parcellationSelected')
+ )
+ .subscribe(parcellation=>
+ this.handleParcellationSelection(parcellation.regions))
+ }
+
+ regions : any[] = []
+
+ handleParcellationSelection(regions:any[]){
+ this.mapRegions(regions)
+ this.regions = Array.from(this.regionsLabelIndexMap.values())
+ }
+
+ paginationChange(pageNum:number){
+ this.currentPage = pageNum
+ }
+
+ serchResultFilesIsArray(files:any){
+ return typeof files !== 'undefined' &&
+ files !== null &&
+ files.constructor === Array
+ }
+
+ renderNode(file:HasPathProperty&File){
+ return `${file.name ? file.name : file.path}`
+ }
+
+ TEMP(){
+ }
+
+ handleTreeNodeClick(obj:{inputItem:any,node:TreeComponent}){
+ obj.node.childrenExpanded = !obj.node.childrenExpanded
+ }
+
+ /* TODO transform this into functional */
+ private mapRegions(regions:any[]){
+ regions.forEach((region:any)=>{
+ if(region.labelIndex){
+ this.regionsLabelIndexMap.set(region.labelIndex,region)
+ }
+ if(region.children){
+ this.mapRegions(region.children)
+ }
+ })
+ }
+
+ get databrowserHeaderText() : string{
+ return this.selectedRegions.length === 0 ?
+ `No regions selected. Listing all datasets grouped by associated regions.` :
+ `${this.selectedRegions.length} region${this.selectedRegions.length > 1 ? 's' : ''} selected.`
+ }
+
+ clearAllRegions(){
+ this.store.dispatch({
+ type : SELECT_REGIONS,
+ selectRegions : []
+ })
+ }
+
+ typeVisible(type:string){
+ return !this.hideDataTypes.has(type)
+ }
+
+ toggleTypeVisibility(type:string){
+ this.hideDataTypes.has(type) ?
+ this.hideDataTypes.delete(type) :
+ this.hideDataTypes.add(type)
+
+ /* Somehow necessary, or else Angular will not mark for change */
+ this.hideDataTypes = new Set(
+ [...this.hideDataTypes]
+ )
+ }
+}
\ No newline at end of file
diff --git a/src/ui/databrowser/databrowser.style.css b/src/ui/databrowser/databrowser.style.css
new file mode 100644
index 000000000..7b8c15c0b
--- /dev/null
+++ b/src/ui/databrowser/databrowser.style.css
@@ -0,0 +1,53 @@
+div[heading]
+{
+ padding : 0.5em 1em;
+ white-space: nowrap;
+ overflow: hidden;
+}
+
+[dataentry]
+{
+ width:100%;
+}
+
+[dataentry] div[heading]
+{
+ padding : 0.4em 1.6em;
+ background-color:rgba(0,0,0,0.2);
+}
+
+[dataentry] div[body]
+{
+ padding : 0.4em 2.0em;
+ background-color:rgba(0,0,0,0.3);
+}
+
+div[databrowserheader]
+{
+ padding : 0.5em 1.0em;
+ background-color:rgba(128,128,128,0.2);
+}
+
+div[databrowserheader] > *
+{
+ padding : 0;
+ margin : 0 ;
+ border : 0 ;
+}
+
+div[filterBlock]
+{
+ padding : 0.5em 1em;
+}
+
+div.clickable:hover
+{
+ color:#dbb556;
+ cursor:default;
+}
+
+div.noResultClass
+{
+ color:rgba(128,128,128,0.8);
+ text-decoration: line-through;
+}
\ No newline at end of file
diff --git a/src/ui/databrowser/databrowser.template.html b/src/ui/databrowser/databrowser.template.html
new file mode 100644
index 000000000..4b95ec135
--- /dev/null
+++ b/src/ui/databrowser/databrowser.template.html
@@ -0,0 +1,87 @@
+<!-- Header -->
+<div databrowserheader>
+ <span>
+ {{ databrowserHeaderText }}
+ </span>
+ <small
+ *ngIf = "selectedRegions.length > 0"
+ class = "btn btn-link"
+ (click) = "clearAllRegions()">
+ clear all
+ </small>
+</div>
+
+<!-- Filter -->
+<div filterBlock>
+ <div>
+ Filter
+ </div>
+ <div
+ *ngFor = "let type of dataEntries | getUniqueProperty : 'type' "
+ class = "clickable"
+ (click)="toggleTypeVisibility(type)">
+ <small>
+ <i
+ *ngIf = "typeVisible(type)"
+ class = "glyphicon glyphicon-check">
+ </i>
+ <i
+ *ngIf = "!typeVisible(type)"
+ class = "glyphicon glyphicon-unchecked">
+ </i>
+ </small>
+ <small>
+ {{ type }}
+ </small>
+ </div>
+</div>
+
+<!-- Data -->
+<div
+ *ngFor = "let data of dataEntries | groupDatasetByRegion : regions | filterRegionDataEntries : selectedRegions | searchResultPagination : currentPage : hitsPerPage">
+ <panel
+ [collapseBody] = "true"
+ [bodyCollapsable] = "true">
+ <div [ngClass] = "(data.searchResults | filterDataEntriesByType : hideDataTypes).length === 0 ? 'noResultClass' : ''" heading>
+ <span>
+ {{ data.region ? data.region.name : 'Not associated with any region' }}
+ </span>
+ <span class = "mute-text">
+ ({{ (data.searchResults | filterDataEntriesByType : hideDataTypes).length }})
+ </span>
+ </div>
+ <div body>
+ <panel
+ *ngFor = "let searchResult of data.searchResults | filterDataEntriesByType : hideDataTypes"
+ [collapseBody] = "true"
+ [bodyCollapsable] = "true"
+ dataentry>
+
+ <div heading>
+ {{ searchResult.name }}
+ </div>
+
+ <div body>
+ <tree
+ *ngFor = "let item of searchResult.files | copyProperty : 'filename' : 'path' | pathToNestedChildren"
+ [childrenExpanded] = "false"
+ [renderNode] = "renderNode"
+ (mouseclicktree) = "handleTreeNodeClick($event)"
+ [inputItem] = " item ">
+
+ </tree>
+ </div>
+ </panel>
+ </div>
+ </panel>
+</div>
+
+<!-- pagination -->
+<pagination-component
+ *ngIf = "(dataEntries | groupDatasetByRegion : regions).length > 0"
+ [hitsPerPage]="hitsPerPage"
+ [total] = "(dataEntries | groupDatasetByRegion : regions| filterRegionDataEntries : selectedRegions).length"
+ [currentPage]="currentPage"
+ (paginationChange)="paginationChange($event)">
+
+</pagination-component>
\ No newline at end of file
diff --git a/src/ui/fileviewer/chart.interface.ts b/src/ui/fileviewer/chart.interface.ts
new file mode 100644
index 000000000..4a1371704
--- /dev/null
+++ b/src/ui/fileviewer/chart.interface.ts
@@ -0,0 +1,74 @@
+import { ChartOptions } from "chart.js";
+
+import merge from 'lodash.merge'
+
+export interface ScaleOptionInterface{
+ type? : string
+ display? : boolean
+ gridLines? : GridLinesOptionInterface
+ ticks? :ScaleTickOptionInterface
+ scaleLabel? : ScaleLabelInterface
+}
+
+export interface GridLinesOptionInterface{
+ display? : boolean
+ color? : string
+}
+
+export interface ScaleTickOptionInterface{
+ min? : number
+ max? : number
+ stepSize? : number
+ backdropColor? : string
+ showLabelBackdrop? : boolean
+ suggestedMin? : number
+ suggestedMax? : number
+ beginAtZero? : boolean
+ fontColor? : string
+}
+
+export interface ChartColor{
+ backgroundColor? : string
+ borderColor? : string
+ pointBackgroundColor? : string
+ pointBorderColor? : string
+ pointHoverBackgroundColor? : string
+ pointHoverBorderColor? : string
+}
+
+export interface DatasetInterface{
+ labels : string[] | number[]
+ datasets : Dataset[]
+}
+
+export interface Dataset{
+ data : number[]
+ label? : string
+ borderWidth? : number
+ borderDash? : number[]
+ fill? :string|number|boolean
+ backgroundColor : string
+}
+
+export interface LegendInterface{
+ display? : boolean
+ labels? : {
+ fontColor? : string
+ }
+}
+
+export interface TitleInterfacce{
+ display? : boolean
+ text? : string
+ fontColor? : string
+}
+
+export interface ScaleLabelInterface{
+ labelString? : string
+ fontColor? : string
+ display? : boolean
+}
+
+export const applyOption = (defaultOption:ChartOptions,option?:Partial<ChartOptions>)=>{
+ merge(defaultOption,option)
+}
\ No newline at end of file
diff --git a/src/ui/fileviewer/fileviewer.component.ts b/src/ui/fileviewer/fileviewer.component.ts
new file mode 100644
index 000000000..0a3f5ff8b
--- /dev/null
+++ b/src/ui/fileviewer/fileviewer.component.ts
@@ -0,0 +1,75 @@
+import { Component, Input, OnChanges, OnDestroy, AfterViewInit, ViewChild, ElementRef } from '@angular/core'
+
+import { DomSanitizer } from '@angular/platform-browser';
+import { DataEntry, File } from '../../services/stateStore.service';
+
+@Component({
+ selector : 'file-viewer',
+ templateUrl : './fileviewer.template.html' ,
+ styleUrls : [
+ './fileviewer.style.css'
+ ]
+})
+
+export class FileViewer implements OnChanges,OnDestroy,AfterViewInit{
+ @Input() searchResultFile : File
+ @ViewChild('childChart') childChart : ChartComponentInterface
+
+ constructor(private sanitizer:DomSanitizer){
+ }
+
+ private _downloadUrl : string
+ private _pngDownloadUrl : string
+
+ ngOnDestroy(){
+ if(this._downloadUrl){
+ URL.revokeObjectURL(this._downloadUrl)
+ }
+ if(this._pngDownloadUrl){
+ URL.revokeObjectURL(this._pngDownloadUrl)
+ }
+ }
+
+ ngOnChanges(){
+ if(this._downloadUrl){
+ URL.revokeObjectURL(this._downloadUrl)
+ }
+ if(!this.searchResultFile.url && this.searchResultFile.data){
+ const stringJson = JSON.stringify(this.searchResultFile.data)
+ const newBlob = new Blob([stringJson],{type:'application/octet-stream'})
+ this._downloadUrl = URL.createObjectURL(newBlob)
+ }
+ }
+
+ /* seems a bit buggy right now */
+ ngAfterViewInit(){
+ if(this.childChart){
+ (<HTMLCanvasElement>this.childChart.canvas.nativeElement).toBlob((blob)=>{
+ this._pngDownloadUrl = URL.createObjectURL(blob)
+ },'image/png')
+ }
+ }
+
+ get downloadUrl(){
+ return this.searchResultFile.url ?
+ this.searchResultFile.url :
+ this._downloadUrl ?
+ this.sanitizer.bypassSecurityTrustResourceUrl(this._downloadUrl) :
+ null
+ }
+
+ get downloadName(){
+ return this.searchResultFile.filename
+ }
+
+ get downloadPng(){
+ return this._pngDownloadUrl ?
+ this.sanitizer.bypassSecurityTrustResourceUrl(this._pngDownloadUrl) :
+ null
+ }
+}
+
+interface ChartComponentInterface{
+ canvas : ElementRef
+}
+
diff --git a/src/ui/fileviewer/fileviewer.style.css b/src/ui/fileviewer/fileviewer.style.css
new file mode 100644
index 000000000..b5791c17b
--- /dev/null
+++ b/src/ui/fileviewer/fileviewer.style.css
@@ -0,0 +1,10 @@
+small#captions
+{
+ display:inline-block;
+ margin:0 1em;
+}
+
+div[emptyRow]
+{
+ margin-bottom:-1em;
+}
\ No newline at end of file
diff --git a/src/ui/fileviewer/fileviewer.template.html b/src/ui/fileviewer/fileviewer.template.html
new file mode 100644
index 000000000..02ef18d7f
--- /dev/null
+++ b/src/ui/fileviewer/fileviewer.template.html
@@ -0,0 +1,73 @@
+
+<!-- file viewer -->
+<div
+ *ngIf = "searchResultFile"
+ [ngSwitch]="searchResultFile.mimetype">
+
+ <div emptyRow *ngSwitchCase = "'application/octet-stream'">
+ <!-- downloadable data -->
+ </div>
+
+ <!-- image -->
+ <div *ngSwitchCase="'image/jpeg'" >
+ <!-- TODO figure out a more elegant way of dealing with draggable img -->
+ <img draggable = "false" [src] = "searchResultFile.url" />
+ </div>
+
+ <!-- data container -->
+ <div [ngSwitch]="searchResultFile.data.chartType" *ngSwitchCase="'application/json'">
+ <radar-chart
+ #childChart
+ [colors] = "searchResultFile.data.colors"
+ [options] = "searchResultFile.data.chartOptions"
+ [labels]="searchResultFile.data.labels"
+ [radarDatasets]="searchResultFile.data.datasets"
+ *ngSwitchCase="'radar'">
+
+ </radar-chart>
+ <line-chart
+ #childChart
+ [colors] = "searchResultFile.data.colors"
+ [options] = "searchResultFile.data.chartOptions"
+ [lineDatasets] = "searchResultFile.data.datasets"
+ *ngSwitchCase = "'line'">
+
+ </line-chart>
+ <div *ngSwitchDefault>
+ The json file is not a chart. I mean, we could dump the json, but would it really help?
+ </div>
+ </div>
+ <div *ngSwitchCase = "'application/nifti'">
+ APPLICATION NIFTI
+ <!-- <dedicated-view-controller
+ [dedicatedViewString]="'nifti://'+searchResultFile.url">
+
+ </dedicated-view-controller> -->
+ </div>
+ <div *ngSwitchCase = "'application/nehuba-layer'">
+ APPLICATION NEHUBA LAYER
+ <!-- <dedicated-view-controller
+ [dedicatedViewString]="'nehuba-layer://'+searchResultFile.url"
+ [dedicatedViewNehubaLayerObject]="searchResultFile.data">
+
+ </dedicated-view-controller> -->
+ </div>
+ <div *ngSwitchDefault>
+ The selected file with the mimetype {{ searchResultFile.mimetype }} could not be displayed.
+ </div>
+</div>
+
+<!-- caption -->
+<readmore *ngIf = "searchResultFile.properties.description">
+ <small id = "captions">
+ {{ searchResultFile.properties.description }}
+ </small>
+</readmore>
+
+<div *ngIf = "downloadUrl">
+ <a [href]="downloadUrl" target = "_blank" class = "btn btn-link" download>Download File</a>
+</div>
+
+<div *ngIf = "downloadPng">
+ <a [href] = "downloadPng" target = "_blank" class = "btn btn-link" download>Download Chart as Image</a>
+</div>
\ No newline at end of file
diff --git a/src/ui/fileviewer/line/line.chart.component.ts b/src/ui/fileviewer/line/line.chart.component.ts
new file mode 100644
index 000000000..3ff42f591
--- /dev/null
+++ b/src/ui/fileviewer/line/line.chart.component.ts
@@ -0,0 +1,149 @@
+import { Component, Input, OnChanges, ElementRef, ViewChild } from '@angular/core'
+import { DatasetInterface, ChartColor, ScaleOptionInterface, LegendInterface, TitleInterfacce, applyOption } from '../chart.interface'
+
+import { ChartOptions, LinearTickOptions,ChartDataSets } from 'chart.js';
+import { Color } from 'ng2-charts';
+@Component({
+ selector : `line-chart`,
+ templateUrl : './line.chart.template.html',
+ styleUrls : [
+ `./line.chart.style.css`
+ ],
+})
+export class LineChart implements OnChanges{
+ @ViewChild('canvas') canvas : ElementRef
+
+ /**
+ * labels of each of the columns, spider web edges
+ */
+ @Input() labels : string[]
+
+ /**
+ * shown on the legend, different lines
+ */
+ @Input() lineDatasets : LineDatasetInputInterface[] = []
+
+ /**
+ * colors of the datasetes
+ */
+ @Input() colors : ChartColor[] = []
+
+ @Input() options : any
+
+ mousescroll(_ev:MouseWheelEvent){
+
+ /**
+ * temporarily disabled
+ */
+
+ }
+
+ maxY : number
+
+ xAxesTicks : LinearTickOptions = {
+ stepSize : 20,
+ fontColor : 'white'
+ }
+ chartOption : LineChartOption = {
+ scales : {
+ xAxes : [{
+ type : 'linear',
+ gridLines : {
+ color : 'rgba(128,128,128,0.5)'
+ },
+ ticks : this.xAxesTicks,
+ scaleLabel : {
+ display : true,
+ labelString : 'X Axes label',
+ fontColor : 'rgba(200,200,200,1.0)'
+ }
+ }],
+ yAxes : [{
+ gridLines : {
+ color : 'rgba(128,128,128,0.5)'
+ },
+ ticks : {
+ fontColor : 'white',
+ },
+ scaleLabel : {
+ display : true,
+ labelString : 'Y Axes label',
+ fontColor : 'rgba(200,200,200,1.0)'
+ }
+ }],
+ },
+ legend : {
+ display : true
+ },
+ title : {
+ display : true,
+ text : 'Title',
+ fontColor : 'rgba(255,255,255,1.0)'
+ },
+ color : [{
+ backgroundColor : `rgba(255,255,255,0.2)`
+ }],
+ animation :undefined,
+ elements :
+ {
+ point : {
+ radius : 0,
+ hoverRadius : 8,
+ hitRadius : 4
+ }
+ }
+
+ }
+
+ chartDataset : DatasetInterface = {
+ labels : [],
+ datasets : []
+ }
+
+ shapedLineChartDatasets : ChartDataSets[]
+
+ ngOnChanges(){
+ this.shapedLineChartDatasets = this.lineDatasets.map(lineDataset=>({
+ data : lineDataset.data.map((v,idx)=>({
+ x : idx,
+ y : v
+ })),
+ fill : 'origin'
+ }))
+
+ this.maxY = this.chartDataset.datasets.reduce((max,dataset)=>{
+ return Math.max(
+ max,
+ dataset.data.reduce((max,number)=>{
+ return Math.max(number,max)
+ },0))
+ },0)
+
+ applyOption(this.chartOption,this.options)
+
+ // this.colors =
+ // this.colors = [{
+ // backgroundColor : 'rgba(0,255,0,0.2)'
+ // }]
+ }
+}
+
+
+export interface LineDatasetInputInterface{
+ label? : string
+ data : number[]
+}
+
+export interface LinearChartOptionInterface{
+ scales? : {
+ xAxes? : ScaleOptionInterface[]
+ yAxes? : ScaleOptionInterface[]
+ }
+ legend? : LegendInterface
+ title? : TitleInterfacce
+ color? : Color[]
+}
+
+interface LineChartOption extends ChartOptions{
+ color? : Color[]
+}
\ No newline at end of file
diff --git a/src/ui/fileviewer/line/line.chart.style.css b/src/ui/fileviewer/line/line.chart.style.css
new file mode 100644
index 000000000..4a9f715af
--- /dev/null
+++ b/src/ui/fileviewer/line/line.chart.style.css
@@ -0,0 +1,5 @@
+:host
+{
+ display:block;
+ margin:1em;
+}
\ No newline at end of file
diff --git a/src/ui/fileviewer/line/line.chart.template.html b/src/ui/fileviewer/line/line.chart.template.html
new file mode 100644
index 000000000..545db5429
--- /dev/null
+++ b/src/ui/fileviewer/line/line.chart.template.html
@@ -0,0 +1,17 @@
+<canvas
+ *ngIf = "shapedLineChartDatasets"
+ (mousewheel)="mousescroll($event)"
+ width = '100%'
+ height = '100%'
+ baseChart
+ chartType="line"
+ [options]="chartOption"
+ [colors]="colors"
+ [datasets]="shapedLineChartDatasets"
+ [labels]="chartDataset.labels"
+ #canvas>
+</canvas>
+<span
+ *ngIf = "!shapedLineChartDatasets">
+ datasets are required to display linear graph
+</span>
\ No newline at end of file
diff --git a/src/ui/fileviewer/radar/radar.chart.component.ts b/src/ui/fileviewer/radar/radar.chart.component.ts
new file mode 100644
index 000000000..846eb22f7
--- /dev/null
+++ b/src/ui/fileviewer/radar/radar.chart.component.ts
@@ -0,0 +1,151 @@
+import { Component, Input, OnChanges, ViewChild, ElementRef } from '@angular/core'
+
+import { DatasetInterface, ChartColor, ScaleOptionInterface, TitleInterfacce, LegendInterface, applyOption } from '../chart.interface';
+import { Color } from 'ng2-charts';
+@Component({
+ selector : `radar-chart`,
+ templateUrl : './radar.chart.template.html',
+ styleUrls : [
+ `./radar.chart.style.css`
+ ],
+})
+export class RadarChart implements OnChanges{
+
+ @ViewChild('canvas') canvas : ElementRef
+ /**
+ * labels of each of the columns, spider web edges
+ */
+ @Input() labels : string[] = []
+
+ /**
+ * shown on the legend, different lines
+ */
+ @Input() radarDatasets : RadarDatasetInputInterface[] = []
+
+ /**
+ * colors of the datasetes
+ */
+ @Input() colors : ChartColor[] = []
+
+ @Input() options : any
+
+ mousescroll(_ev:MouseWheelEvent){
+
+ /**
+ * mouse wheel zooming disabled for now
+ */
+ /**
+ * TODO the sroll up event sometimes does not get prevented for some reasons...
+ */
+
+ // ev.stopPropagation()
+ // ev.preventDefault()
+
+ // this.maxY *= ev.deltaY > 0 ? 1.2 : 0.8
+ // const newTicksObj = {
+ // stepSize : Math.ceil( this.maxY / 500 ) * 100,
+ // max : this.maxY
+ // }
+
+ // const combineTicksObj = Object.assign({},this.chartOption.scale!.ticks,newTicksObj)
+ // const combineScale = Object.assign({},this.chartOption.scale,{ticks:combineTicksObj})
+ // this.chartOption = Object.assign({},this.chartOption,{scale : combineScale,animation : false})
+ }
+
+ maxY : number
+
+ chartOption : RadarChartOptionInterface = {
+ scale : {
+ gridLines : {
+ color : 'rgba(128,128,128,0.5)'
+ },
+ ticks : {
+ showLabelBackdrop : false,
+ fontColor : 'white'
+ },
+ angleLines : {
+ color : 'rgba(128,128,128,0.2)'
+ },
+ pointLabels : {
+ fontColor : 'white'
+ }
+ },
+ legend : {
+ display: true,
+ labels : {
+ fontColor : 'white'
+ }
+ },
+ title :{
+ text : 'Radar graph',
+ display : true,
+ fontColor : 'rgba(255,255,255,1.0)'
+ },
+ color : [{
+ backgroundColor : `rgba(255,255,255,0.2)`
+ }],
+ animation : false
+ }
+
+ chartDataset : DatasetInterface = {
+ labels : [],
+ datasets : []
+ }
+
+
+ ngOnChanges(){
+ this.chartDataset = {
+ labels : this.labels,
+ datasets : this.radarDatasets.map(ds=>Object.assign({},ds,{backgroundColor : 'rgba(255,255,255,0.2)'}))
+ }
+ // this.chartDataset.datasets[0]
+
+ this.maxY = this.chartDataset.datasets.reduce((max,dataset)=>{
+ return Math.max(
+ max,
+ dataset.data.reduce((max,number)=>{
+ return Math.max(number,max)
+ },0))
+ },0)
+
+ applyOption(this.chartOption,this.options)
+ // this.colors = [
+ // {
+ // borderColor : 'rgba(255,255,255,1)'
+ // },
+ // {
+ // borderColor : ' rgba(255,255,255,1)',
+ // }
+ // ]
+
+ // console.log(this.chartDataset)
+ }
+}
+
+export interface RadarDatasetInputInterface{
+ label : string
+ data : number[]
+}
+
+export interface RadarChartOptionInterface{
+ scale? : ScaleOptionInterface&RadarScaleOptionAdditionalInterface
+ animation? : any
+ legend? : LegendInterface
+ title? : TitleInterfacce
+ color? :Color[]
+}
+
+interface RadarScaleOptionAdditionalInterface{
+ angleLines? :AngleLineInterface
+ pointLabels?:PointLabelInterface
+}
+
+interface AngleLineInterface{
+ display? : boolean
+ color? : string
+ lineWidth? : number
+}
+
+interface PointLabelInterface{
+ fontColor? : string
+}
\ No newline at end of file
diff --git a/src/ui/fileviewer/radar/radar.chart.style.css b/src/ui/fileviewer/radar/radar.chart.style.css
new file mode 100644
index 000000000..4a9f715af
--- /dev/null
+++ b/src/ui/fileviewer/radar/radar.chart.style.css
@@ -0,0 +1,5 @@
+:host
+{
+ display:block;
+ margin:1em;
+}
\ No newline at end of file
diff --git a/src/ui/fileviewer/radar/radar.chart.template.html b/src/ui/fileviewer/radar/radar.chart.template.html
new file mode 100644
index 000000000..b45ae2442
--- /dev/null
+++ b/src/ui/fileviewer/radar/radar.chart.template.html
@@ -0,0 +1,17 @@
+<canvas
+ #canvas
+ (mousewheel)="mousescroll($event)"
+ width = '100%'
+ height = '100%'
+ *ngIf = "chartDataset.datasets.length > 0 && chartDataset.labels.length > 0"
+ baseChart
+ chartType="radar"
+ [options]="chartOption"
+ [colors]="colors"
+ [datasets]="chartDataset.datasets"
+ [labels]="chartDataset.labels">
+</canvas>
+<span
+ *ngIf = "chartDataset.datasets.length == 0 || chartDataset.labels.length == 0">
+ datasets and labels are required to display radar
+</span>
\ No newline at end of file
diff --git a/src/ui/nehubaContainer/nehubaContainer.component.ts b/src/ui/nehubaContainer/nehubaContainer.component.ts
index 844163494..1be0b7208 100644
--- a/src/ui/nehubaContainer/nehubaContainer.component.ts
+++ b/src/ui/nehubaContainer/nehubaContainer.component.ts
@@ -68,6 +68,7 @@ export class NehubaContainner implements OnInit{
this.loadedParcellation$.subscribe(this.handleParcellation)
this.selectedRegions$.subscribe(regions=>{
+ if(!this.nehubaViewer) return
this.selectedRegionIndexSet = new Set(regions.map(r=>r.labelIndex))
this.selectedRegionIndexSet.size > 0 ?
this.nehubaViewer.showSegs([...this.selectedRegionIndexSet]) :
@@ -114,9 +115,11 @@ export class NehubaContainner implements OnInit{
}
private handleParcellation(parcellation:any){
+ if(!this.nehubaViewer) return
this.mapRegions(parcellation.regions)
this.nehubaViewer.regionsLabelIndexMap = this.regionsLabelIndexMap
this.nehubaViewer.parcellationId = parcellation.ngId
+
}
private createNewNehuba(template:any){
@@ -138,4 +141,58 @@ export class NehubaContainner implements OnInit{
}
})
}
+
+ /* related to info-card */
+
+ statusPanelRealSpace : boolean = true
+
+ get mouseCoord():string{
+ return this.nehubaViewer ?
+ this.statusPanelRealSpace ?
+ this.nehubaViewer.mousePosReal ?
+ Array.from(this.nehubaViewer.mousePosReal.map(n=> isNaN(n) ? 0 : n/1e6))
+ .map(n=>n.toFixed(3)+'mm').join(' , ') :
+ '0mm , 0mm , 0mm (mousePosReal not yet defined)' :
+ this.nehubaViewer.mousePosVoxel ?
+ this.nehubaViewer.mousePosVoxel.join(' , ') :
+ '0 , 0 , 0 (mousePosVoxel not yet defined)' :
+ '0 , 0 , 0 (nehubaViewer not defined)'
+ }
+
+ get onHoverSegment():string{
+ if(!this.nehubaViewer) return 'nehubaViewer not yet initialised'
+ const region = this.regionsLabelIndexMap.get(this.nehubaViewer.mouseOverSegment)
+ return region ?
+ region.name :
+ this.nehubaViewer.mouseOverSegment ?
+ `Segment labelIndex: ${this.nehubaViewer.mouseOverSegment}` :
+ ``
+ }
+
+ editingNavState : boolean = false
+ textNavigateTo(string:string){
+ if(string.split(/[\s|,]+/).length>=3 && string.split(/[\s|,]+/).slice(0,3).every(entry=>!isNaN(Number(entry.replace(/mm/,''))))){
+ const pos = (string.split(/[\s|,]+/).slice(0,3).map((entry,idx)=>Number(entry.replace(/mm/,''))*(this.statusPanelRealSpace ? 1000000 : 1)))
+ this.nehubaViewer.setNavigationState({
+ position : (pos as [number,number,number]),
+ positionReal : this.statusPanelRealSpace
+ })
+ // this.navigate(
+ // string.split(/[\s|,]+/).slice(0,3).map(entry=>Number(entry.replace(/mm/,''))*(this.statusPanelRealSpace ? 1000000 : 1)),
+ // 0,
+ // this.statusPanelRealSpace
+ // )
+ }else{
+ console.log('input did not parse to coordinates ',string)
+ }
+ }
+
+ navigationValue(){
+ return this.nehubaViewer ?
+ this.statusPanelRealSpace ?
+ Array.from(this.nehubaViewer.navPosReal.map(n=> isNaN(n) ? 0 : n/1e6))
+ .map(n=>n.toFixed(3)+'mm').join(' , ') :
+ Array.from(this.nehubaViewer.navPosVoxel.map(n=> isNaN(n) ? 0 : n)).join(' , ') :
+ `[0,0,0] (neubaViewer is undefined)`
+ }
}
\ No newline at end of file
diff --git a/src/ui/nehubaContainer/nehubaContainer.style.css b/src/ui/nehubaContainer/nehubaContainer.style.css
index ad3ebc005..8e7cf156d 100644
--- a/src/ui/nehubaContainer/nehubaContainer.style.css
+++ b/src/ui/nehubaContainer/nehubaContainer.style.css
@@ -2,4 +2,51 @@
{
width:100%;
height:100%;
+ position:relative;
+}
+
+div[textContainer]
+{
+ padding-left:1em;
+}
+
+input[navigateInput]
+{
+ background:none;
+ width : 16em;
+ padding-left: 0.5em;
+ font-size:85%;
+ box-shadow: inset 0px 2px 2px 2px rgba(0,0,0,0.05);
+}
+
+
+:host-context([darktheme=false]) input[navigateInput]
+{
+ border:rgba(0,0,0,0.2) solid 1px;
+}
+
+:host-context([darktheme=true]) input[navigateInput]
+{
+ border:rgba(255,255,255,0.2) solid 1px;
+}
+
+div[statusCard]
+{
+ position:absolute;
+ left:1em;
+ bottom:1em;
+ width : 20em;
+ height:7em;
+ pointer-events: all;
+}
+
+:host-context([darktheme=false]) div[statusCard]
+{
+ background-color:rgba(230,230,230,0.8);
+}
+
+:host-context([darktheme=true]) div[statusCard]
+{
+ background-color:rgba(20,20,20,0.8);
+ color : rgba(250,250,250,0.8);
}
\ No newline at end of file
diff --git a/src/ui/nehubaContainer/nehubaContainer.template.html b/src/ui/nehubaContainer/nehubaContainer.template.html
index 56b1e3694..ec4140c09 100644
--- a/src/ui/nehubaContainer/nehubaContainer.template.html
+++ b/src/ui/nehubaContainer/nehubaContainer.template.html
@@ -1,4 +1,37 @@
<ng-template #container>
</ng-template>
<ui-splashscreen *ngIf = "!viewerLoaded">
-</ui-splashscreen>
\ No newline at end of file
+</ui-splashscreen>
+<layout-floating-container
+ *ngIf = "viewerLoaded">
+ <div statusCard>
+
+ <span
+ class = "btn btn-link"
+ (click)="statusPanelRealSpace = !statusPanelRealSpace">
+ {{statusPanelRealSpace ? 'RealSpace' : 'VoxelSpace'}}
+ </span>
+
+ <br />
+ <div textContainer>
+ Navigation:
+ <input
+ (keydown.enter) = "textNavigateTo(navigateInput.value)"
+ (keydown.tab) = "textNavigateTo(navigateInput.value)"
+ [ngModel] = "navigationValue()"
+ spellcheck = "false"
+ #navigateInput
+ navigateInput/>
+
+ <br />
+ Mouse:
+ <small>
+ {{ mouseCoord }}
+ </small>
+ <br />
+ <small>
+ {{ onHoverSegment }}
+ </small>
+ </div>
+ </div>
+</layout-floating-container>
\ No newline at end of file
diff --git a/src/ui/nehubaContainer/nehubaViewer/nehubaViewer.component.ts b/src/ui/nehubaContainer/nehubaViewer/nehubaViewer.component.ts
index 5ba7f04b6..afcae1ca1 100644
--- a/src/ui/nehubaContainer/nehubaViewer/nehubaViewer.component.ts
+++ b/src/ui/nehubaContainer/nehubaViewer/nehubaViewer.component.ts
@@ -2,8 +2,8 @@ import { Component, AfterViewInit, OnDestroy } from "@angular/core";
import * as export_nehuba from 'export_nehuba'
import 'export_nehuba/dist/min/chunk_worker.bundle.js'
-import { Observable, Observer } from "rxjs";
-import { takeUntil } from 'rxjs/operators'
+import { Observable,Subject, Subscription } from 'rxjs'
+import { combineLatest } from 'rxjs/operators'
@Component({
templateUrl : './nehubaViewer.template.html',
@@ -16,10 +16,34 @@ export class NehubaViewerUnit implements AfterViewInit,OnDestroy{
config : any
nehubaViewer : any
+ _s1$ : any
+ _s2$ : any
+ _s3$ : any
+ _s4$ : any
+ _s5$ : any
+ _s6$ : any
+ _s7$ : any
+
+ _s$ : any[] = [
+ this._s1$,
+ this._s2$,
+ this._s3$,
+ this._s4$,
+ this._s5$,
+ this._s6$,
+ this._s7$
+ ]
+
parcellationId : string
regionsLabelIndexMap : Map<number,any>
- shownSegment$ : any
- mouseoverSegment$ : any
+
+ navPosReal : [number,number,number] = [0,0,0]
+ navPosVoxel : [number,number,number] = [0,0,0]
+
+ mousePosReal : [number,number,number] = [0,0,0]
+ mousePosVoxel : [number,number,number] = [0,0,0]
+
+ viewerState : ViewerState
private defaultColormap : Map<number,{red:number,green:number,blue:number}>
public mouseOverSegment : number | null
@@ -30,35 +54,67 @@ export class NehubaViewerUnit implements AfterViewInit,OnDestroy{
if(this.regionsLabelIndexMap){
this.loadNewParcellation()
}
+
+ window['nehubaViewer'] = this.nehubaViewer
}
ngOnDestroy(){
- this.nehubaViewer.dispose()
- this.shownSegment$.unsubscribe()
- this.mouseoverSegment$.unsubscribe()
+ this._s$.forEach(_s$=>{
+ if(_s$) _s$.unsubscribe()
+ })
}
public hideAllSeg(){
- this.showAllSeg()
+ Array.from(this.regionsLabelIndexMap.keys()).forEach(idx=>
+ this.nehubaViewer.hideSegment(idx,{
+ name : this.parcellationId
+ }))
this.nehubaViewer.showSegment(0,{
name : this.parcellationId
})
}
public showAllSeg(){
- Array.from(this.regionsLabelIndexMap.keys()).forEach(idx=>
- this.nehubaViewer.hideSegment(idx,{
- name : this.parcellationId
- }))
+ this.hideAllSeg()
+ this.nehubaViewer.hideSegment(0,{
+ name : this.parcellationId
+ })
}
public showSegs(array:number[]){
- this.showAllSeg()
+ this.hideAllSeg()
+
+ this.nehubaViewer.hideSegment(0,{
+ name : this.parcellationId
+ })
+
array.forEach(idx=>
this.nehubaViewer.showSegment(idx,{
name : this.parcellationId
}))
}
+ public setNavigationState(newViewerState:Partial<ViewerState>){
+ const {
+ orientation,
+ perspectiveOrientation,
+ perspectiveZoom,
+ position,
+ positionReal,
+ zoom
+ } = newViewerState
+
+ if( perspectiveZoom )
+ this.nehubaViewer.ngviewer.perspectiveNavigationState.zoomFactor.restoreState(perspectiveZoom)
+ if( zoom )
+ this.nehubaViewer.ngviewer.navigationState.zoomFactor.restoreState(zoom)
+ if( perspectiveOrientation )
+ this.nehubaViewer.ngviewer.perspectiveNavigationState.pose.orientation.restoreState( perspectiveOrientation )
+ if( orientation )
+ this.nehubaViewer.ngviewer.navigationState.pose.orientation.restoreState( orientation )
+ if( position )
+ this.nehubaViewer.setPosition( position , positionReal ? true : false )
+ }
+
private updateColorMap(arrayIdx:number[]){
const set = new Set(arrayIdx)
const newColorMap = new Map(
@@ -78,7 +134,10 @@ export class NehubaViewerUnit implements AfterViewInit,OnDestroy{
[
...Array.from(this.regionsLabelIndexMap.keys()),
...[65535]
- ]
+ ],
+ {
+ name : this.parcellationId
+ }
)
this.defaultColormap = new Map(
@@ -93,13 +152,41 @@ export class NehubaViewerUnit implements AfterViewInit,OnDestroy{
this.defaultColormap,
{ name : this.parcellationId })
- if(this.shownSegment$) this.shownSegment$.unsubscribe()
- if(this.mouseoverSegment$) this.mouseoverSegment$.unsubscribe()
- this.shownSegment$ = this.nehubaViewer.getShownSegmentsObservable({
+ this._s$.forEach(_s$=>{
+ if(_s$) _s$.unsubscribe()
+ })
+
+ this._s1$ = this.nehubaViewer.getShownSegmentsObservable({
name : this.parcellationId
}).subscribe(arrayIdx=>this.updateColorMap(arrayIdx))
- this.mouseoverSegment$ = this.nehubaViewer.mouseOver.segment
+
+ this._s2$ = this.nehubaViewer.mouseOver.segment
.subscribe(obj=>this.mouseOverSegment = obj.segment)
+ this._s3$ = this.nehubaViewer.navigationState.all
+ .debounceTime(300)
+ .subscribe(({ orientation, perspectiveOrientation, perspectiveZoom, position, zoom })=>{
+ this.viewerState = {
+ orientation,
+ perspectiveOrientation,
+ perspectiveZoom,
+ zoom,
+ position,
+ positionReal : false
+ }
+ })
+
+ this._s4$ = this.nehubaViewer.navigationState.position.inRealSpace
+ .filter(v=>typeof v !== 'undefined' && v !== null)
+ .subscribe(v=>this.navPosReal=v)
+ this._s5$ = this.nehubaViewer.navigationState.position.inVoxels
+ .filter(v=>typeof v !== 'undefined' && v !== null)
+ .subscribe(v=>this.navPosVoxel=v)
+ this._s6$ = this.nehubaViewer.mousePosition.inRealSpace
+ .filter(v=>typeof v !== 'undefined' && v !== null)
+ .subscribe(v=>(this.mousePosReal=v))
+ this._s7$ = this.nehubaViewer.mousePosition.inVoxels
+ .filter(v=>typeof v !== 'undefined' && v !== null)
+ .subscribe(v=>(this.mousePosVoxel=v))
}
private getRgb(rgb?:number[]):{red:number,green:number,blue:number}{
@@ -115,4 +202,13 @@ export class NehubaViewerUnit implements AfterViewInit,OnDestroy{
blue : rgb[2]
}
}
-}
\ No newline at end of file
+}
+
+export interface ViewerState{
+ orientation : [number,number,number,number]
+ perspectiveOrientation : [number,number,number,number]
+ perspectiveZoom : number
+ position : [number,number,number]
+ positionReal : boolean
+ zoom : number
+}
diff --git a/src/ui/ui.module.ts b/src/ui/ui.module.ts
index fa6c84d4d..c0f49352e 100644
--- a/src/ui/ui.module.ts
+++ b/src/ui/ui.module.ts
@@ -6,10 +6,25 @@ import { NehubaViewerUnit } from "./nehubaContainer/nehubaViewer/nehubaViewer.co
import { NehubaContainner } from "./nehubaContainer/nehubaContainer.component";
import { SplashScreen } from "./nehubaContainer/splashScreen/splashScreen.component";
import { LayoutModule } from "../layouts/layout.module";
+import { FormsModule } from "@angular/forms";
+import { DataBrowserUI } from "./databrowser/databrowser.component";
+import { GroupDatasetByRegion } from "../util/pipes/groupDataEntriesByRegion.pipe";
+import { filterRegionDataEntries } from "../util/pipes/filterRegionDataEntries.pipe";
+import { FileViewer } from "./fileviewer/fileviewer.component";
+
+import { ChartsModule } from 'ng2-charts'
+import { RadarChart } from "./fileviewer/radar/radar.chart.component";
+import { LineChart } from "./fileviewer/line/line.chart.component";
+import { PathToNestedChildren } from "../util/pipes/pathToNestedChildren.pipe";
+import { CopyPropertyPipe } from "../util/pipes/copyProperty.pipe";
+import { GetUniqueProperty } from "../util/pipes/getUniqueProperty.pipe";
+import { FilterDataEntriesbyType } from "../util/pipes/filterDataEntriesByType.pipe";
@NgModule({
imports : [
+ ChartsModule,
+ FormsModule,
BrowserModule,
LayoutModule,
ComponentsModule
@@ -17,7 +32,19 @@ import { LayoutModule } from "../layouts/layout.module";
declarations : [
NehubaContainner,
NehubaViewerUnit,
- SplashScreen
+ SplashScreen,
+ DataBrowserUI,
+ FileViewer,
+ RadarChart,
+ LineChart,
+
+ /* pipes */
+ GroupDatasetByRegion,
+ filterRegionDataEntries,
+ PathToNestedChildren,
+ CopyPropertyPipe,
+ GetUniqueProperty,
+ FilterDataEntriesbyType
],
entryComponents : [
@@ -26,7 +53,9 @@ import { LayoutModule } from "../layouts/layout.module";
],
exports : [
NehubaContainner,
- NehubaViewerUnit
+ NehubaViewerUnit,
+ DataBrowserUI,
+ FileViewer
]
})
diff --git a/src/util/pipes/copyProperty.pipe.ts b/src/util/pipes/copyProperty.pipe.ts
new file mode 100644
index 000000000..2b599c629
--- /dev/null
+++ b/src/util/pipes/copyProperty.pipe.ts
@@ -0,0 +1,16 @@
+import { PipeTransform, Pipe } from "@angular/core";
+
+
+@Pipe({
+ name : 'copyProperty'
+})
+
+export class CopyPropertyPipe implements PipeTransform{
+ public transform(inputArray:any[],src:string,dest:string):any[]{
+ return inputArray.map(item=>{
+ const newObj = Object.assign({},item)
+ newObj[dest] = item[src]
+ return newObj
+ })
+ }
+}
\ No newline at end of file
diff --git a/src/util/pipes/filterDataEntries.pipe.ts b/src/util/pipes/filterDataEntries.pipe.ts
new file mode 100644
index 000000000..252b4611c
--- /dev/null
+++ b/src/util/pipes/filterDataEntries.pipe.ts
@@ -0,0 +1,15 @@
+import { Pipe, PipeTransform } from "@angular/core";
+import { DataEntry } from "../../services/stateStore.service";
+
+@Pipe({
+ name : 'filterDatasetSearchResult'
+})
+
+export class FilterDatasetSearchResult implements PipeTransform{
+ public transform(datasets:DataEntry[],filterArr:{name:string,enabled:boolean}[]):DataEntry[]{
+ return datasets.filter(dataset=>{
+ const filter = filterArr.find(obj=>obj.name == dataset.type)
+ return filter ? filter.enabled : false
+ })
+ }
+}
\ No newline at end of file
diff --git a/src/util/pipes/filterDataEntriesByType.pipe.ts b/src/util/pipes/filterDataEntriesByType.pipe.ts
new file mode 100644
index 000000000..f343173f3
--- /dev/null
+++ b/src/util/pipes/filterDataEntriesByType.pipe.ts
@@ -0,0 +1,13 @@
+import { PipeTransform, Pipe } from "@angular/core";
+import { DataEntry } from "../../services/stateStore.service";
+
+
+@Pipe({
+ name : 'filterDataEntriesByType'
+})
+
+export class FilterDataEntriesbyType implements PipeTransform{
+ public transform(dataEntries:DataEntry[],hideTypeSet:Set<string>):DataEntry[]{
+ return dataEntries.filter(dataEntry=>!hideTypeSet.has(dataEntry.type))
+ }
+}
\ No newline at end of file
diff --git a/src/util/pipes/filterNameBySearch.pipe.ts b/src/util/pipes/filterNameBySearch.pipe.ts
new file mode 100644
index 000000000..bc4413857
--- /dev/null
+++ b/src/util/pipes/filterNameBySearch.pipe.ts
@@ -0,0 +1,15 @@
+import { Pipe, PipeTransform } from "@angular/core";
+
+
+@Pipe({
+ name : 'filterNameBySearch'
+})
+
+export class FilterNameBySearch implements PipeTransform{
+ public transform(searchFields:string[],searchTerm:string){
+ return searchFields.some(searchField=>{
+ const regex = new RegExp(searchTerm,'i')
+ return regex.test(searchField)
+ })
+ }
+}
\ No newline at end of file
diff --git a/src/util/pipes/filterRegionDataEntries.pipe.ts b/src/util/pipes/filterRegionDataEntries.pipe.ts
new file mode 100644
index 000000000..ef2c4db67
--- /dev/null
+++ b/src/util/pipes/filterRegionDataEntries.pipe.ts
@@ -0,0 +1,15 @@
+import { Pipe, PipeTransform } from "@angular/core";
+import { DataEntry } from "../../services/stateStore.service";
+
+
+@Pipe({
+ name : 'filterRegionDataEntries'
+})
+
+export class filterRegionDataEntries implements PipeTransform{
+ public transform(arr:{region:any|null,searchResults:DataEntry[]}[],selectedRegions:any[]):{region:any|null,searchResults:DataEntry[]}[]{
+ return selectedRegions.length > 0 ?
+ arr.filter(obj=> obj.region !== null && selectedRegions.findIndex(r=>obj.region.name === r.name) >= 0) :
+ arr
+ }
+}
\ No newline at end of file
diff --git a/src/util/pipes/getUniqueProperty.pipe.ts b/src/util/pipes/getUniqueProperty.pipe.ts
new file mode 100644
index 000000000..b7754ccaa
--- /dev/null
+++ b/src/util/pipes/getUniqueProperty.pipe.ts
@@ -0,0 +1,18 @@
+import { Pipe, PipeTransform } from "@angular/core";
+
+
+@Pipe({
+ name : 'getUniqueProperty'
+})
+
+export class GetUniqueProperty implements PipeTransform{
+ public transform(arr:any[],prop:string):string[]{
+ return [...arr.reduce((acc:Set<string>,curr)=>{
+ return curr[prop] && typeof curr[prop] === 'string' ?
+ acc.has(curr[prop]) ?
+ acc :
+ acc.add(curr[prop]) :
+ acc
+ },new Set())]
+ }
+}
\ No newline at end of file
diff --git a/src/util/pipes/groupDataEntriesByRegion.pipe.ts b/src/util/pipes/groupDataEntriesByRegion.pipe.ts
new file mode 100644
index 000000000..3d2ab267d
--- /dev/null
+++ b/src/util/pipes/groupDataEntriesByRegion.pipe.ts
@@ -0,0 +1,48 @@
+import { Pipe, PipeTransform } from "@angular/core";
+import { DataEntry } from "../../services/stateStore.service";
+
+@Pipe({
+ name : 'groupDatasetByRegion'
+})
+export class GroupDatasetByRegion implements PipeTransform{
+ public transform(
+ datasets:DataEntry[],
+ regions:any[]
+ ) : {region:any|null,searchResults:DataEntry[]}[]
+ {
+
+ return datasets.reduce((acc,curr)=>{
+ return (curr.regionName && curr.regionName.length > 0) ?
+ curr.regionName.reduce((acc2,reName)=>{
+ const idx = acc
+ .findIndex(it => it.region === null ?
+ reName.regionName === 'none' :
+ it.region.name === reName.regionName )
+
+ return idx >= 0 ?
+ acc2.map((v,i)=> i === idx ? Object.assign({},v,{searchResults : v.searchResults.concat(curr)}) : v ) :
+ acc2.concat({
+ region : this.getRegionFromRegionName(reName.regionName, regions),
+ searchResults : [ curr ]
+ })
+ },acc) :
+ acc.findIndex(it=>it.region==null) >= 0 ?
+ acc.map(it=>it.region === null ?
+ Object.assign({},it,{
+ searchResults:it.searchResults.concat(curr)
+ }) :
+ it) :
+ acc.concat({
+ region : null,
+ searchResults : [curr]
+ })
+
+ },[] as {region:any|null,searchResults:DataEntry[]}[])
+ }
+
+ private getRegionFromRegionName(regionName:string,regions:any[]):any|null{
+ const idx = regions.findIndex(re=>re.name == regionName)
+ return idx >= 0 ? regions[idx] : null
+ }
+
+}
\ No newline at end of file
diff --git a/src/util/pipes/pagination.pipe.ts b/src/util/pipes/pagination.pipe.ts
new file mode 100644
index 000000000..31f177c2e
--- /dev/null
+++ b/src/util/pipes/pagination.pipe.ts
@@ -0,0 +1,15 @@
+import { Pipe, PipeTransform } from "@angular/core";
+
+@Pipe({
+ name : 'searchResultPagination'
+})
+
+export class SearchResultPaginationPipe implements PipeTransform{
+ private _hitsPerPage:number = 15
+ private _pageNumber:number = 0
+ public transform(arr:any[],pageNumber?:number,hitsPerPage?:number){
+ return arr.filter((_,idx)=>
+ (idx >= (pageNumber === undefined ? this._pageNumber : pageNumber) * (hitsPerPage === undefined ? this._hitsPerPage : hitsPerPage)) &&
+ idx < ((pageNumber === undefined ? this._pageNumber : pageNumber) + 1) * (hitsPerPage === undefined ? this._hitsPerPage : hitsPerPage))
+ }
+}
\ No newline at end of file
diff --git a/src/util/pipes/pathToNestedChildren.pipe.spec.ts b/src/util/pipes/pathToNestedChildren.pipe.spec.ts
new file mode 100644
index 000000000..90819fdbc
--- /dev/null
+++ b/src/util/pipes/pathToNestedChildren.pipe.spec.ts
@@ -0,0 +1,3 @@
+/**
+ * path to nested children should successfully convert flat array to nested objects
+ */
\ No newline at end of file
diff --git a/src/util/pipes/pathToNestedChildren.pipe.ts b/src/util/pipes/pathToNestedChildren.pipe.ts
new file mode 100644
index 000000000..2ab5d634c
--- /dev/null
+++ b/src/util/pipes/pathToNestedChildren.pipe.ts
@@ -0,0 +1,110 @@
+import { PipeTransform, Pipe } from "@angular/core";
+
+/**
+ * The pipe transforms a flat array to a nested array, based on the path property, following Unix file path rule
+ */
+
+@Pipe({
+ name : 'pathToNestedChildren'
+})
+
+export class PathToNestedChildren implements PipeTransform{
+ public transform(array:HasPathProperty[],prop?:string):NestedChildren[]{
+ return this.constructDoubleHeirachy(array)
+ }
+
+ private constructDoubleHeirachy(array:HasPathProperty[]):NestedChildren[]{
+ return array.reduce((acc:NestedChildren[],curr:HasPathProperty)=>{
+ return this.checkEntryExist(acc,curr) ?
+ acc.map(item=>
+ this.checkEntryExist([item],curr) ?
+ this.concatItem(item,curr) :
+ item ) as NestedChildren[] :
+ acc.concat(
+ this.constructNewItem(curr)
+ ) as NestedChildren[]
+ },[] as NestedChildren[])
+ }
+
+ private constructNewItem(curr:HasPathProperty):NestedChildren{
+ const finalPath = this.getCurrentPath(curr) === curr.path
+ return Object.assign({},
+ finalPath ?
+ curr :
+ {},{
+ path : this.getCurrentPath(curr),
+ children : finalPath ?
+ [] :
+ this.constructDoubleHeirachy(
+ [ this.getNextLevelHeirachy(curr) ]
+ )
+ })
+ }
+
+ private concatItem(item:NestedChildren,curr:HasPathProperty):NestedChildren{
+ const finalPath = this.getCurrentPath(curr) === curr.path
+ return Object.assign({},
+ item,
+ finalPath ?
+ curr :
+ {},
+ {
+ children : item.children.concat(
+ finalPath ?
+ [] :
+ this.constructDoubleHeirachy(
+ [ this.getNextLevelHeirachy(curr) ]
+ )
+ )
+ })
+ }
+
+ private checkEntryExist(acc:NestedChildren[],curr:HasPathProperty):boolean{
+ const path = this.getCurrentPath(curr)
+ return acc.findIndex(it=>it.path === path) >= 0
+ }
+
+ private getNextLevelHeirachy(file:HasPathProperty):HasPathProperty{
+ return Object.assign({},file,
+ {
+ path:file.path.slice(this.findRealIndex(file.path)+1)
+ })
+ }
+
+ private getNextPath(curr:HasPathProperty):string{
+ const realIdx = this.findRealIndex(curr.path)
+ return realIdx > 0 ?
+ curr.path.slice(realIdx + 1) :
+ realIdx == 0 ?
+ ' ' :
+ curr.path
+ }
+
+ private getCurrentPath(curr:HasPathProperty):string{
+ const realIdx = this.findRealIndex(curr.path)
+ return realIdx > 0 ?
+ curr.path.slice(0,realIdx) :
+ realIdx == 0 ?
+ ' ' :
+ curr.path
+ }
+
+ private findRealIndex(path:string):number{
+
+ let idx = path.indexOf('/')
+ while(path[idx-1] === '\\' && idx >= 0){
+ idx = path.indexOf('/',idx + 1)
+ }
+ return idx
+ }
+
+}
+
+export interface HasPathProperty{
+ path : string
+}
+
+export interface NestedChildren{
+ path : string
+ children : NestedChildren[]
+}
\ No newline at end of file
--
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