diff --git a/package-lock.json b/package-lock.json index e5847f1277c076aa19436120d728efa41d2c0a50..0706055de729dac77a6d8c2e22118151744c5b97 100644 --- a/package-lock.json +++ b/package-lock.json @@ -301,6 +301,12 @@ "integrity": "sha512-ONhaKPIufzzrlNbqtWFFd+jlnemX6lJAgq9ZeiZtS7I1PIf/la7CW4m83rTXRnVnsMbW2k56pGYu7AUFJD9Pow==", "dev": true }, + "@types/chart.js": { + "version": "2.7.20", + "resolved": "https://registry.npmjs.org/@types/chart.js/-/chart.js-2.7.20.tgz", + "integrity": "sha512-9vriJW2C2Ps7jILfzNio+7xPcy0Lu8jfc/FykmTHBIClunENEjeEGjnM4NMhg6uSJ+3eGyc3sq681ouizztmXw==", + "dev": true + }, "@types/webpack-env": { "version": "1.13.6", "resolved": "https://registry.npmjs.org/@types/webpack-env/-/webpack-env-1.13.6.tgz", @@ -2058,6 +2064,43 @@ "integrity": "sha1-tUc7M9yXxCTl2Y3IfVXU2KKci/I=", "dev": true }, + "chart.js": { + "version": "2.7.2", + "resolved": "https://registry.npmjs.org/chart.js/-/chart.js-2.7.2.tgz", + "integrity": "sha512-90wl3V9xRZ8tnMvMlpcW+0Yg13BelsGS9P9t0ClaDxv/hdypHDr/YAGf+728m11P5ljwyB0ZHfPKCapZFqSqYA==", + "dev": true, + "requires": { + "chartjs-color": "2.2.0", + "moment": "2.22.2" + } + }, + "chartjs-color": { + "version": "2.2.0", + "resolved": "https://registry.npmjs.org/chartjs-color/-/chartjs-color-2.2.0.tgz", + "integrity": "sha1-hKL7dVeH7YXDndbdjHsdiEKbrq4=", + "dev": true, + "requires": { + "chartjs-color-string": "0.5.0", + "color-convert": "0.5.3" + }, + "dependencies": { + "color-convert": { + "version": "0.5.3", + "resolved": "https://registry.npmjs.org/color-convert/-/color-convert-0.5.3.tgz", + "integrity": "sha1-vbbGnOZg+t/+CwAHzER+G59ygr0=", + "dev": true + } + } + }, + "chartjs-color-string": { + "version": "0.5.0", + "resolved": "https://registry.npmjs.org/chartjs-color-string/-/chartjs-color-string-0.5.0.tgz", + "integrity": "sha512-amWNvCOXlOUYxZVDSa0YOab5K/lmEhbFNKI55PWc4mlv28BDzA7zaoQTGxSBgJMHIW+hGX8YUrvw/FH4LyhwSQ==", + "dev": true, + "requires": { + "color-name": "1.1.3" + } + }, "chokidar": { "version": "2.0.3", "resolved": "https://registry.npmjs.org/chokidar/-/chokidar-2.0.3.tgz", @@ -6353,6 +6396,12 @@ "lodash.isarray": "3.0.4" } }, + "lodash.merge": { + "version": "4.6.1", + "resolved": "https://registry.npmjs.org/lodash.merge/-/lodash.merge-4.6.1.tgz", + "integrity": "sha512-AOYza4+Hf5z1/0Hztxpm2/xiPZgi/cjMqdnKTUWTBSKchJlxXXuUSxCCl8rJlf4g6yww/j6mA8nC8Hw/EZWxKQ==", + "dev": true + }, "lodash.restparam": { "version": "3.6.1", "resolved": "https://registry.npmjs.org/lodash.restparam/-/lodash.restparam-3.6.1.tgz", @@ -6930,6 +6979,12 @@ "minimist": "0.0.8" } }, + "moment": { + "version": "2.22.2", + "resolved": "https://registry.npmjs.org/moment/-/moment-2.22.2.tgz", + "integrity": "sha1-PCV/mDn8DpP/UxSWMiOeuQeD/2Y=", + "dev": true + }, "move-concurrently": { "version": "1.0.1", "resolved": "https://registry.npmjs.org/move-concurrently/-/move-concurrently-1.0.1.tgz", @@ -7038,6 +7093,15 @@ "integrity": "sha1-yobR/ogoFpsBICCOPchCS524NCw=", "dev": true }, + "ng2-charts": { + "version": "1.6.0", + "resolved": "https://registry.npmjs.org/ng2-charts/-/ng2-charts-1.6.0.tgz", + "integrity": "sha512-9w0WH69x5/nuqC1og2WaY39NbaBqTGIP1+5gZaH7/KPN6UEPonNg/pYnsIVklLj1DWPWXKa8+XXIJZ1jy5nLxg==", + "dev": true, + "requires": { + "chart.js": "2.7.2" + } + }, "ngx-bootstrap": { "version": "3.0.0", "resolved": "https://registry.npmjs.org/ngx-bootstrap/-/ngx-bootstrap-3.0.0.tgz", diff --git a/package.json b/package.json index bafa12c37c5a65920bbbcb553adc936e1ee7901f..fb08407f448f9bb11b7ade82697b1272147f0cda 100644 --- a/package.json +++ b/package.json @@ -23,11 +23,15 @@ "@angular/platform-browser-dynamic": "^6.0.3", "@ngrx/store": "^6.0.1", "@ngtools/webpack": "^6.0.5", + "@types/chart.js": "^2.7.20", "@types/webpack-env": "^1.13.6", "angular2-template-loader": "^0.6.2", + "chart.js": "^2.7.2", "core-js": "^2.5.6", "file-loader": "^1.1.11", "html-webpack-plugin": "^3.2.0", + "lodash.merge": "^4.6.1", + "ng2-charts": "^1.6.0", "ngx-bootstrap": "^3.0.0", "raw-loader": "^0.5.1", "reflect-metadata": "^0.1.12", diff --git a/src/atlasViewer/atlasViewer.component.ts b/src/atlasViewer/atlasViewer.component.ts index 26e3f78099393d112795def277257bc6a0ca7a47..e5b7633a1aa8784a65130f2351619a6be8253998 100644 --- a/src/atlasViewer/atlasViewer.component.ts +++ b/src/atlasViewer/atlasViewer.component.ts @@ -1,6 +1,6 @@ -import { Component, HostBinding } from "@angular/core"; +import { Component, HostBinding, ViewChild, ViewContainerRef, AfterViewInit } from "@angular/core"; import { Store, select } from "@ngrx/store"; -import { ViewerStateInterface, FETCHED_TEMPLATES, safeFilter } from "../services/stateStore.service"; +import { ViewerStateInterface, FETCHED_TEMPLATES, safeFilter, Property, FETCHED_METADATA, FETCHED_DATAENTRIES, DataEntry } from "../services/stateStore.service"; import { Observable } from "rxjs"; import { map } from "rxjs/operators"; @@ -12,11 +12,13 @@ import { map } from "rxjs/operators"; ] }) -export class AtlasViewer{ +export class AtlasViewer implements AfterViewInit{ @HostBinding('attr.darktheme') darktheme : boolean = false + @ViewChild('sidecontent',{read:ViewContainerRef}) sideContent : ViewContainerRef + selectedTemplate$ : Observable<any> constructor(private store : Store<ViewerStateInterface>){ @@ -53,4 +55,81 @@ export class AtlasViewer{ this.selectedTemplate$.subscribe(template=>this.darktheme = template.useTheme === 'dark') } + + ngAfterViewInit(){ + + const meta = 'res/json/allAggregatedData.json' + const urls = [ + 'res/json/receptorAggregatedData.json', + 'res/json/pmapsAggregatedData.json', + 'res/json/dwmAggregatedData.json', + 'res/json/swmAggregatedData.json', + 'res/json/dartboardAggregatedData.json' + ] + + const dispatchData = (arr:DataEntry[][]) =>{ + this.store.dispatch({ + type : FETCHED_DATAENTRIES, + fetchedDataEntries : arr.reduce((acc,curr)=>acc.concat(curr),[]) + }) + } + + const fetchData = (parcellationName : string) => { + if(parcellationName == 'JuBrain Cytoarchitectonic Atlas'){ + Promise.all([ + fetch('res/json/pmapsAggregatedData.json').then(res=>res.json()), + fetch('res/json/receptorAggregatedData.json').then(res=>res.json()), + ]) + .then(arr=>dispatchData(arr)) + .catch(console.warn) + } + else if (parcellationName == 'Fibre Bundle Atlas - Short Bundle'){ + Promise.all([fetch('res/json/swmAggregatedData.json').then(res=>res.json())]) + .then(arr=>dispatchData(arr)) + .catch(console.warn) + + }else if (parcellationName == 'Fibre Bundle Atlas - Long Bundle'){ + + Promise.all([fetch('res/json/dwmAggregatedData.json').then(res=>res.json())]) + .then(arr=>dispatchData(arr)) + .catch(console.warn) + } + else{ + dispatchData([]) + } + } + + fetch(meta) + .then(res=>res.json()) + .then(metadata=>{ + const data = metadata.reduce((acc:[string,Map<string,{properties:Property}>][],curr:any)=>{ + const idx = acc.findIndex((it)=>it[0]===curr[0].targetParcellation) + return idx >= 0 ? + acc.map((it,i)=> i === idx ? [it[0], it[1].set(curr[0].datasetName,curr[1])] : it ) : + acc.concat([[ curr[0].targetParcellation , new Map([[curr[0].datasetName , curr[1]]]) ]]) + + /* [[ curr[0].targetParcellation , [ curr[0].datasetName , curr[1]] ]] */ + },[] as [string,Map<string,{properties:Property}>][]) + + this.store.dispatch({ + type : FETCHED_METADATA, + fetchedMetadataMap : new Map(data) + }) + + }) + .catch(console.error) + + this.store.pipe( + select('viewerState'), + safeFilter('parcellationSelected'), + map(({parcellationSelected})=>(parcellationSelected.name)) + ) + .subscribe(fetchData) + this.store.pipe( + select('newViewer'), + safeFilter('parcellationSelected'), + map(({parcellationSelected})=>(parcellationSelected.name)) + ) + .subscribe(fetchData) + } } \ No newline at end of file diff --git a/src/atlasViewer/atlasViewer.dataService.service.ts b/src/atlasViewer/atlasViewer.dataService.service.ts new file mode 100644 index 0000000000000000000000000000000000000000..6e3f6a54d79d2535c70cf020a084165df24c5bd3 --- /dev/null +++ b/src/atlasViewer/atlasViewer.dataService.service.ts @@ -0,0 +1,11 @@ +import { Injectable } from "@angular/core"; +import { Store } from "@ngrx/store"; +import { ViewerStateInterface } from "../services/stateStore.service"; + + +@Injectable() +export class AtlasViewerDataService{ + constructor(private store : Store<ViewerStateInterface>){ + + } +} \ No newline at end of file diff --git a/src/atlasViewer/atlasViewer.style.css b/src/atlasViewer/atlasViewer.style.css index ef62a1d3cd4ce3edb94f5fe82c752d06d7207439..33605fc7cca4ff210371a79c733cf05f297be572 100644 --- a/src/atlasViewer/atlasViewer.style.css +++ b/src/atlasViewer/atlasViewer.style.css @@ -5,6 +5,11 @@ height:100%; } +:host[darktheme="true"] +{ + background-color:black; +} + layout-mainside { width:100%; @@ -28,10 +33,29 @@ ui-nehuba-container atlas-banner { - z-index:3; + z-index:5; position:absolute; top : 1em; left: 1em; width:100%; +} + +div[databrowserheading] +{ + font-size:110%; + padding : 0.5em 0.7em; +} +panel[databrowserpanel] +{ + display:block; + width:300px; + overflow-x:hidden; +} + +div[sidecontent] +{ + height:100%; + overflow-y:auto; + overflow-x:hidden; } \ No newline at end of file diff --git a/src/atlasViewer/atlasViewer.template.html b/src/atlasViewer/atlasViewer.template.html index bd04793fac84cb9f366d472b999fee339978ab1a..e06aeee30096aed20e2e6a9fa89ab26f54cffa82 100644 --- a/src/atlasViewer/atlasViewer.template.html +++ b/src/atlasViewer/atlasViewer.template.html @@ -4,10 +4,30 @@ </ui-nehuba-container> <atlas-banner> - </atlas-banner> + + <layout-floating-container + zIndex = "4"> + </layout-floating-container> </div> - <div sidecontent> - SIDECONTENT + <div + sidecontent> + <ng-template #sideContent> + + </ng-template> </div> -</layout-mainside> \ No newline at end of file +</layout-mainside> + +<ng-template #databrowser> + <panel + databrowserpanel + [bodyCollapsable] = "true"> + <div databrowserheading heading> + Data Browser + </div> + <div databrowserbody body> + <data-browser> + </data-browser> + </div> + </panel> +</ng-template> \ No newline at end of file diff --git a/src/components/components.module.ts b/src/components/components.module.ts index e064e030b37c97b546fac6a0cc868ea0d2cac224..b3c41153a7ca587f4738683a336279f8a1d86f1e 100644 --- a/src/components/components.module.ts +++ b/src/components/components.module.ts @@ -12,6 +12,9 @@ import { BrowserModule } from '@angular/platform-browser'; import { HoverableBlockDirective } from './hoverableBlock.directive'; import { DropdownComponent } from './dropdown/dropdown.component'; import { TreeComponent } from './tree/tree.component'; +import { PanelComponent } from './panel/panel.component'; +import { PaginationComponent } from './pagination/pagination.component'; +import { SearchResultPaginationPipe } from '../util/pipes/pagination.pipe'; @NgModule({ imports : [ @@ -26,22 +29,29 @@ import { TreeComponent } from './tree/tree.component'; ReadmoreComponent, DropdownComponent, TreeComponent, + PanelComponent, + PaginationComponent, /* directive */ HoverableBlockDirective, /* pipes */ - SafeHtmlPipe + SafeHtmlPipe, + SearchResultPaginationPipe ], exports : [ MarkdownDom, ReadmoreComponent, DropdownComponent, TreeComponent, + PanelComponent, + PaginationComponent, + + SearchResultPaginationPipe, HoverableBlockDirective, - ComponentsExample + ComponentsExample, ] }) diff --git a/src/components/hoverableBlock.directive.ts b/src/components/hoverableBlock.directive.ts index c43eb65fb4fdc95f77b0682259ea8549e45d1ba4..e05dc260d0f2693500c98318b5deb2c7350c56d3 100644 --- a/src/components/hoverableBlock.directive.ts +++ b/src/components/hoverableBlock.directive.ts @@ -16,7 +16,7 @@ import { DomSanitizer } from "@angular/platform-browser"; export class HoverableBlockDirective{ @HostBinding('style.opacity') - opacity : number = 0.8 + opacity : number = 0.9 @HostBinding('style.transform') transform = this.sanitizer.bypassSecurityTrustStyle(`translateY(0px)`) @@ -33,7 +33,7 @@ export class HoverableBlockDirective{ @HostListener('mouseleave') onmouseleave(){ - this.opacity = 0.8 + this.opacity = 0.9 this.boxShadow = this.sanitizer.bypassSecurityTrustStyle(`0 4px 6px 0 rgba(5,5,5,0.1)`) this.transform = this.sanitizer.bypassSecurityTrustStyle(`translateY(0px)`) } diff --git a/src/components/pagination/pagination.component.ts b/src/components/pagination/pagination.component.ts new file mode 100644 index 0000000000000000000000000000000000000000..fc962a2ae61f8423b9b898a7ad40bca1e7e5de0d --- /dev/null +++ b/src/components/pagination/pagination.component.ts @@ -0,0 +1,58 @@ +import { Component, Input, Output, EventEmitter } from '@angular/core' + +@Component({ + selector : 'pagination-component', + templateUrl : './pagination.template.html', + styleUrls : [ + './pagination.style.css' + ] +}) + +export class PaginationComponent{ + @Input() total : number = 0 + @Input() hitsPerPage : number = 15 + @Input() currentPage : number = 0 + + @Output() paginationChange : EventEmitter<number> = new EventEmitter() + + goto(pgnum:number){ + const emitValue = pgnum < 0 ? + 0 : + pgnum >= Math.ceil(this.total / this.hitsPerPage) ? + Math.ceil(this.total / this.hitsPerPage) - 1 : + pgnum + + this.paginationChange.emit(emitValue) + } + + gotoFirst(){ + this.goto(0) + } + + gotoLast(){ + const num = Math.floor(this.total / this.hitsPerPage) + 1 + this.goto(num) + } + + get getPagination(){ + return Array.from(Array(Math.ceil(this.total / this.hitsPerPage)).keys()).filter((this.hidePagination).bind(this)) + } + + get getPageLowerBound(){ + return this.currentPage * this.hitsPerPage + 1 + } + + get getPageUpperBound(){ + return Math.min( ( this.currentPage + 1 ) * this.hitsPerPage , this.total ) + } + + hidePagination(idx:number){ + + const correctedPagination = this.currentPage < 2 ? + 2 : + this.currentPage > (Math.ceil(this.total / this.hitsPerPage) - 3) ? + Math.ceil(this.total / this.hitsPerPage) - 3 : + this.currentPage + return (Math.abs(idx-correctedPagination) < 3) + } +} \ No newline at end of file diff --git a/src/components/pagination/pagination.style.css b/src/components/pagination/pagination.style.css new file mode 100644 index 0000000000000000000000000000000000000000..2b06f6363c0b0d943f788e8be0077da07b8e75a2 --- /dev/null +++ b/src/components/pagination/pagination.style.css @@ -0,0 +1,73 @@ +div.pagination-container +{ + padding:0.5em 0; + display:flex; + flex-direction: column; + align-items: center; +} + +:host-context([darktheme="true"]) div.pagination-container +{ + background-color:rgba(30,30,30,0.9); + color:rgba(240,240,240,0.9); +} + +div.btn +{ + border:none; + position : relative; + cursor:default; + transition : transform 0.1s ease; +} + +div.btn:hover +{ + transform: translateY(-2%); +} + +div.btn:before +{ + content : ' '; + position : absolute; + top:0; + left:0; + width : 100%; + height : 100%; + pointer-events: none; + background-color : rgba(128,128,128,1); + opacity: 0.0; + transition : opacity 0.1s ease; +} + +div.btn:hover:before +{ + opacity : 0.3; +} + +:host-context([darktheme="true"]) div.btn.btn-default +{ + background-color:rgba(128,128,128,0.5); + color:rgba(240,240,240,0.9); +} + +div.btn.btn-primary +{ + transform:translateY(3%); + position : relative; +} + +div.btn.btn-primary:before +{ + position : absolute; + content : ' '; + left:0; + top:0; + + width:100%; + height:100%; + + background-color : black; + opacity : 0.1; + + pointer-events: none; +} \ No newline at end of file diff --git a/src/components/pagination/pagination.template.html b/src/components/pagination/pagination.template.html new file mode 100644 index 0000000000000000000000000000000000000000..cb53156b2a5e30acdf284bf2a9bb37c90a3f261b --- /dev/null +++ b/src/components/pagination/pagination.template.html @@ -0,0 +1,48 @@ +<div class = "pagination-container"> + <div class = "btn-group"> + + <div + class = "default-control btn btn-default btn-sm" + (click)="gotoFirst()" + > + + <i class = "glyphicon glyphicon-fast-backward"></i> + </div> + + <div + class = "btn btn-default btn-sm" + (click)="goto(currentPage - 1)" + > + <i class = "glyphicon glyphicon-step-backward"></i> + </div> + + <div + (click)="goto(pageNum)" + [ngClass]="{'btn-primary':currentPage == pageNum}" + *ngFor = "let pageNum of getPagination" + class = "pagination-control btn btn-default btn-sm" + > + {{ pageNum + 1 }} + </div> + + <div + class = "btn btn-default btn-sm" + (click)="goto(currentPage + 1)" + > + <i class = "glyphicon glyphicon-step-forward"></i> + </div> + <div + class = "btn btn-default btn-sm" + (click)="gotoLast()" + > + <i class = "glyphicon glyphicon-fast-forward"></i> + </div> + + </div> + <div *ngIf = "total > 0" class = "pagination-summary"> + showing {{ getPageLowerBound }} - {{ getPageUpperBound }} out of {{ total }} + </div> + <div *ngIf = "total == 0" class = "pagination-summary"> + no results + </div> +</div> \ No newline at end of file diff --git a/src/components/panel/panel.component.ts b/src/components/panel/panel.component.ts new file mode 100644 index 0000000000000000000000000000000000000000..ed81129782de8882d58f58b17a2d4bd90731bf88 --- /dev/null +++ b/src/components/panel/panel.component.ts @@ -0,0 +1,27 @@ +import { Component, Input, ChangeDetectionStrategy } from "@angular/core"; + +@Component({ + selector : 'panel', + templateUrl : './panel.template.html', + styleUrls : [ + `./panel.style.css` + ] +}) + +export class PanelComponent{ + + @Input() showHeading : boolean = true + @Input() showBody : boolean = true + @Input() showFooter : boolean = false + + @Input() collapseBody : boolean = false + @Input() bodyCollapsable : boolean = false + + toggleCollapseBody(event:Event){ + if(this.bodyCollapsable){ + this.collapseBody = !this.collapseBody + } + event.stopPropagation() + event.preventDefault() + } +} \ No newline at end of file diff --git a/src/components/panel/panel.style.css b/src/components/panel/panel.style.css new file mode 100644 index 0000000000000000000000000000000000000000..9c5475548006e2bb17c584de0bfbce79a47370f8 --- /dev/null +++ b/src/components/panel/panel.style.css @@ -0,0 +1,48 @@ +:host +{ + font-size:92%; +} + +.panel +{ + border-radius : 0; + border:none; + box-shadow: 0px 4px 16px -4px rgba(0,0,0,0.2); + margin:0; +} + +.panel > .panel-heading +{ + border-radius : 0; + padding: 0; + margin:0; + border:none; +} + +.panel > .panel-body, +.panel > .panel-footer +{ + border:none; +} + +.panel > .panel-body +{ + padding: 0; +} + +div.panel +{ + background:none; +} + +:host-context([darktheme="true"]) div.panel-heading +{ + background-color:rgba(45,45,45,0.9); + color:rgba(255,255,255,0.9); +} + +:host-context([darktheme="true"]) div.panel-body +{ + color:rgba(255,255,255,0.9); + background-color:rgba(45,45,45,0.65); +} \ No newline at end of file diff --git a/src/components/panel/panel.template.html b/src/components/panel/panel.template.html new file mode 100644 index 0000000000000000000000000000000000000000..853c6ee7031daada8ced86f5586b27432f327eeb --- /dev/null +++ b/src/components/panel/panel.template.html @@ -0,0 +1,30 @@ +<div class = "panel panel-default"> + <div + *ngIf = "showHeading" + class = "panel-heading" + (click) = "toggleCollapseBody($event)" + hoverable> + + <ng-content select="[heading]"> + </ng-content> + + </div> + <div + *ngIf = "showBody" + class = "panel-body" + [hidden] = "collapseBody"> + + <ng-content select="[body]"> + </ng-content> + + </div> + <div + *ngIf = "showFooter" + [hidden] = "collapseBody" + class = "panel-footer"> + + <ng-content select="[footer]"> + </ng-content> + + </div> +</div> \ No newline at end of file diff --git a/src/components/tree/tree.component.ts b/src/components/tree/tree.component.ts index 50b9bf3cfcb796d8a6a21f771b701a4f52d80e23..081376b31581ed1bafb148bb94cdd6ece39fe056 100644 --- a/src/components/tree/tree.component.ts +++ b/src/components/tree/tree.component.ts @@ -1,4 +1,4 @@ -import { Component, Input, Output, EventEmitter } from "@angular/core"; +import { Component, Input, Output, EventEmitter, ViewChildren, QueryList, HostBinding } from "@angular/core"; @Component({ @@ -16,20 +16,23 @@ export class TreeComponent{ } @Input() renderNode : (item:any)=>string = (item)=>item.name @Input() findChildren : (item:any)=>any[] = (item)=>item.children + @Input() childrenExpanded : boolean = true - @Input() searchFilter : (item:any)=>boolean | null + @Input() searchFilter : (item:any)=>boolean | null = null @Output() mouseentertree : EventEmitter<any> = new EventEmitter() @Output() mouseleavetree : EventEmitter<any> = new EventEmitter() @Output() mouseclicktree : EventEmitter<any> = new EventEmitter() - public childrenExpanded : boolean = true + @ViewChildren(TreeComponent) treeChildren : QueryList<TreeComponent> get chevronClass():string{ - return this.findChildren(this.inputItem).length > 0 ? - this.childrenExpanded ? - 'glyphicon-chevron-down' : - 'glyphicon-chevron-right' : + return this.children ? + this.children.length > 0 ? + this.childrenExpanded ? + 'glyphicon-chevron-down' : + 'glyphicon-chevron-right' : + 'glyphicon-none' : 'glyphicon-none' } @@ -43,4 +46,15 @@ export class TreeComponent{ event.stopPropagation() event.preventDefault() } + + get children():any[]{ + return this.findChildren(this.inputItem) + } + + @HostBinding('attr.filterHidden') + get visibilityOnFilter():boolean{ + return (this.searchFilter ? + this.searchFilter(this.inputItem) || (this.treeChildren.some(tree=>tree.visibilityOnFilter) ) : + true) + } } \ No newline at end of file diff --git a/src/components/tree/tree.style.css b/src/components/tree/tree.style.css index fdf27cdc776aadf6e7c14fd86942e8dd5c2fabb0..fec01230a858b1d61f88a16715c99a96375979a1 100644 --- a/src/components/tree/tree.style.css +++ b/src/components/tree/tree.style.css @@ -1,4 +1,4 @@ -tree:not([hidden]) +tree:not([filterHidden="false"]):not([hidden]) { display:block; margin-left:1em; @@ -23,14 +23,15 @@ div[itemContainer] > [itemName] white-space: nowrap; } -[itemName]:hover +div[itemContainer] > span[itemName]:hover { cursor:default; + color:rgba(219, 181, 86,1); } /* dashed guiding line */ -tree:not(:last-child) > div[itemMasterContainer]:before +tree:not([filterHidden="false"]):not(:last-child) > div[itemMasterContainer]:before { pointer-events: none; @@ -42,13 +43,13 @@ tree:not(:last-child) > div[itemMasterContainer]:before border-left: rgba(255,255,255,1) 1px dashed; } -tree:not(:last-child) div[itemMasterContainer] > [itemContainer] +tree:not([filterHidden="false"]):not(:last-child) div[itemMasterContainer] > [itemContainer] { position:relative; } -tree:not(:last-child) div[itemMasterContainer] > [itemContainer]:before +tree:not([filterHidden="false"]):not(:last-child) div[itemMasterContainer] > [itemContainer]:before { pointer-events: none; content : ''; @@ -60,12 +61,12 @@ tree:not(:last-child) div[itemMasterContainer] > [itemContainer]:before z-index: 0; } -tree:last-child div[itemMasterContainer] > [itemContainer] +tree:not([filterHidden="false"]):last-child div[itemMasterContainer] > [itemContainer] { position:relative; } -tree:last-child div[itemMasterContainer] > [itemContainer]:before +tree:not([filterHidden="false"]):last-child div[itemMasterContainer] > [itemContainer]:before { pointer-events: none; content : ''; @@ -77,17 +78,17 @@ tree:last-child div[itemMasterContainer] > [itemContainer]:before z-index: 0; } -tree:not(:last-child) div[itemMasterContainer]:before +tree:not([filterHidden="false"]):not(:last-child) div[itemMasterContainer]:before { border-left: rgba(128,128,128,0.6) 1px dashed; } -tree:not(:last-child) div[itemMasterContainer] > [itemContainer]:before +tree:not([filterHidden="false"]):not(:last-child) div[itemMasterContainer] > [itemContainer]:before { border-bottom: rgba(128,128,128,0.6) 1px dashed; } -tree div[itemMasterContainer]:last-child > [itemContainer]:before +tree:not([filterHidden="false"]) div[itemMasterContainer]:last-child > [itemContainer]:before { border-bottom: rgba(128,128,128,0.6) 1px dashed; border-left : rgba(128,128,128,0.6) 1px dashed; diff --git a/src/components/tree/tree.template.html b/src/components/tree/tree.template.html index 1b0278ba89bde2815ad92760c38d2c4282cece7b..c0d71c6a22f72e3e3d123a2df707ba90a84d5adf 100644 --- a/src/components/tree/tree.template.html +++ b/src/components/tree/tree.template.html @@ -1,7 +1,8 @@ <div - (mouseleave)="mouseleavetree.emit(inputItem);handleEv($event)" - (mouseenter)="mouseentertree.emit(inputItem);handleEv($event)" - (click)="mouseclicktree.emit(inputItem);handleEv($event)" + [hidden] = "!visibilityOnFilter" + (mouseleave)="mouseleavetree.emit({inputItem:inputItem,node:this});handleEv($event)" + (mouseenter)="mouseentertree.emit({inputItem:inputItem,node:this});handleEv($event)" + (click)="mouseclicktree.emit({inputItem:inputItem,node:this});handleEv($event)" itemMasterContainer> <div itemContainer> <i @@ -18,6 +19,7 @@ <tree *ngFor = "let child of findChildren(inputItem)" [hidden] = "!childrenExpanded" + [childrenExpanded] = "childrenExpanded" [inputItem] = "child" [renderNode]="renderNode" [searchFilter]="searchFilter" diff --git a/src/layouts/floating/floating.component.ts b/src/layouts/floating/floating.component.ts new file mode 100644 index 0000000000000000000000000000000000000000..9653baccc455f7cc73dc4a81e939961923f6fef9 --- /dev/null +++ b/src/layouts/floating/floating.component.ts @@ -0,0 +1,16 @@ +import { Component, ViewChild, HostBinding, Input } from "@angular/core"; + + +@Component({ + selector : 'layout-floating-container', + templateUrl : './floating.template.html', + styleUrls : [ + `./floating.style.css` + ] +}) + +export class FloatingLayoutContainer{ + @HostBinding('style.z-index') + @Input() + zIndex : number = 5 +} \ No newline at end of file diff --git a/src/layouts/floating/floating.style.css b/src/layouts/floating/floating.style.css new file mode 100644 index 0000000000000000000000000000000000000000..0cb15ee43e183a4d6bb193608840da0b4886934f --- /dev/null +++ b/src/layouts/floating/floating.style.css @@ -0,0 +1,15 @@ +:host +{ + position: absolute; + top:0; + left:0; + width:100%; + height:100%; + display:block; + pointer-events: none; +} + +:host * +{ + pointer-events: all; +} \ No newline at end of file diff --git a/src/layouts/floating/floating.template.html b/src/layouts/floating/floating.template.html new file mode 100644 index 0000000000000000000000000000000000000000..d7b4509bdd7e7b9ac0c84063fdc18c606fb96a9f --- /dev/null +++ b/src/layouts/floating/floating.template.html @@ -0,0 +1,2 @@ +<ng-content> +</ng-content> \ No newline at end of file diff --git a/src/layouts/layout.module.ts b/src/layouts/layout.module.ts index 6fc53f1f31db28e3a5eb6ee81e3e1a49d8492d7e..4541a74b9da560f4dd9f121818b4905d84c5957d 100644 --- a/src/layouts/layout.module.ts +++ b/src/layouts/layout.module.ts @@ -3,6 +3,7 @@ import { LayoutMainSide } from "./mainside/mainside.component"; import { LayoutsExample } from "./layoutsExample/layoutsExample.component"; import { BrowserModule } from "@angular/platform-browser"; import { ComponentsModule } from "../components/components.module"; +import { FloatingLayoutContainer } from "./floating/floating.component"; @NgModule({ @@ -12,10 +13,14 @@ import { ComponentsModule } from "../components/components.module"; ], declarations : [ LayoutMainSide, + FloatingLayoutContainer, + LayoutsExample ], exports : [ LayoutMainSide, + FloatingLayoutContainer, + LayoutsExample ] }) diff --git a/src/main.module.ts b/src/main.module.ts index 9859393577b689af067727e9299cfbe0afaa50dc..e635fe641bc17f8c6d2878086d49d2452da671e7 100644 --- a/src/main.module.ts +++ b/src/main.module.ts @@ -6,7 +6,7 @@ import { LayoutModule } from "./layouts/layout.module"; import { Examples } from "./examples/examples.component"; import { AtlasViewer } from "./atlasViewer/atlasViewer.component"; import { StoreModule } from "@ngrx/store"; -import { changeState, newViewer } from "./services/stateStore.service"; +import { viewerState, newViewer, dataStore } from "./services/stateStore.service"; import { AtlasBanner } from "./ui/banner/banner.component"; import { GetNamesPipe } from "./util/pipes/getNames.pipe"; import { CommonModule } from "@angular/common"; @@ -26,8 +26,9 @@ import { PopoverModule } from 'ngx-bootstrap/popover' PopoverModule.forRoot(), Serv.forRoot(), StoreModule.forRoot({ - viewerState : changeState, - newViewer : newViewer + viewerState : viewerState, + newViewer : newViewer, + dataStore : dataStore }) ], declarations : [ diff --git a/src/main.ts b/src/main.ts index 95ac97b440baa26ed41052c462cb7896f8dc6759..f9f13fe7c364c10d39b62645ad91e906a3c2ade4 100644 --- a/src/main.ts +++ b/src/main.ts @@ -3,6 +3,8 @@ import 'reflect-metadata' import { platformBrowserDynamic } from '@angular/platform-browser-dynamic' import { MainModule } from './main.module'; +import 'chart.js/src/chart.js' + const requireAll = (r:any) => {r.keys().forEach(r)} requireAll(require.context('./res/ext',false, /.json$/)) diff --git a/src/res/ext/allAggregatedData.json b/src/res/ext/allAggregatedData.json new file mode 100644 index 0000000000000000000000000000000000000000..e847cafa13297fd56084d2292949f791d7f7174a --- /dev/null +++ b/src/res/ext/allAggregatedData.json @@ -0,0 +1,80 @@ +[ + [ + { + "targetParcellation": "JuBrain Cytoarchitectonic Atlas", + "datasetName": "Receptor Data" + }, + { + "name": "Quantification of Multiple Receptor Distributions for Selected Areas", + "properties": { + "description": null, + "publications": [ + { + "doi": "http://juser.fz-juelich.de/record/23682", + "citation": "Zilles, K., Schleicher, A., Palomero-Gallagher, N., Amunts, K. (2002) Quantitative analysis of cyto- and receptor architecture of the human brain. In: /Brain Mapping: The Methods/, J. C. Mazziotta and A. Toga (eds.), USA: Elsevier, 2002, p. 573-602." + }, + { + "doi": "https://doi.org/10.1016/j.cortex.2014.07.007", + "citation": "Zilles, K.; Bacha-Trams, M.; Palomero-Gallagher, N.; Amunts, K.; Friederici, A.D. (2015) Common molecular basis of the sentence comprehension network revealed by neurotransmitter receptor fingerprints. Cortex, vol 63, pp.79-89." + }, + { + "doi": "res/pdf/ReceptorReadme.pdf", + "citation": "README.pdf for the receptor data" + } + ] + } + } + ], + [ + { + "targetParcellation": "JuBrain Cytoarchitectonic Atlas", + "datasetName": "Cytoarchitectonic Probabilistic Map" + }, + { + "name": "Cytoarchitectonic Probabilistic Map", + "properties": { + "description": "The Jubrain cytoarchitectonic probabilistic maps were developed in the teams of Katrin Amunts and Karl Zilles in Juelich and Duesseldorf (INM-1). Cytoarchitectonic areas were analyzed in histological sections of ten human postmortem brains. The maps are based on image analysis and statistical criteria for localizing areal borders. Cytoarchitectonic maps have been developed during the past 20 years as a joint effort of many doctoral students, post docs and guest scientists. Maps, which have been published, are available for the scientific community.", + "publications": [ + { + "doi": "https://doi.org/10.1038/nrn2776", + "citation": "Zilles, K., Amunts, K. 2010. Centenary of Brodmann's map--conception and fate. Nat Rev Neurosci. 11(2):139-45" + }, + { + "doi": "https://doi.org/10.1016/j.neuroimage.2007.02.037", + "citation": "Amunts, K., Schleicher, A., Zilles, K. 2007. Cytoarchitecture of the cerebral cortex--more than localization. Neuroimage. 37(4):1061-5" + }, + { + "doi": "http://juser.fz-juelich.de/record/23682", + "citation": "Zilles, K., Schleicher, A., Palomero-Gallagher, N., Amunts, K. (2002) Quantitative analysis of cyto- and receptor architecture of the human brain. In: /Brain Mapping: The Methods/, J. C. Mazziotta and A. Toga (eds.), USA: Elsevier, 2002, p. 573-602." + } + ] + } + } + ], + [ + { + "targetParcellation": "Fibre Bundle Atlas - Short Bundle", + "datasetName": "Probabilistic Map" + }, + { + "name": "Bundle Atlas Probabilistic Map", + "properties": { + "description": "", + "publications": [] + } + } + ], + [ + { + "targetParcellation": "Fibre Bundle Atlas - Long Bundle", + "datasetName": "Probabilistic Map" + }, + { + "name": "Bundle Atlas Probabilistic Map", + "properties": { + "description": "", + "publications": [] + } + } + ] +] \ No newline at end of file diff --git a/src/res/ext/dartboardAggregatedData.json b/src/res/ext/dartboardAggregatedData.json new file mode 100644 index 0000000000000000000000000000000000000000..d2cd9e9d4ec0576a0e7f65125485bc8639109701 --- /dev/null +++ b/src/res/ext/dartboardAggregatedData.json @@ -0,0 +1 @@ +[{"type":"Dart board","name":"Dart board","regionName":[],"files":[{"filename":"Dart Board Image Layer","name":"Dart Board over lay","mimetype":"application/nehuba-layer","properties":{"name":"","description":"","publications":[],"associatedRegion":"","associatedParcellation":"Grey/White matter","datasetInfo":""},"url":"precomputed://https://neuroglancer-dev.humanbrainproject.org/precomputed/demos/2018-05_V1_demo","data":{"time series":{"type":"image","source":"precomputed://https://neuroglancer-dev.humanbrainproject.org/precomputed/demos/2018-05_V1_demo","shader":"void main(){float x = toNormalized(getDataValue(0));float r=clamp(8.0/3.0*x,0.0,1.0);float a = clamp(x,0.0,1.0);float g=clamp(8.0/3.0*x-1.0,0.0,1.0);float b=clamp(4.0*x-3.0,0.0,1.0);emitRGB(vec3(r,g,b));}","transform":[[1,0,0,-70856016],[0,1,0,-73200000],[0,0,1,-58967116],[0,0,0,1]]}}}],"targetParcellation":"Grey/White matter"}] \ No newline at end of file diff --git a/src/res/ext/dwmAggregatedData.json b/src/res/ext/dwmAggregatedData.json new file mode 100644 index 0000000000000000000000000000000000000000..e963af5e6092511cd6e164c29a537a5bf1486a09 --- /dev/null +++ b/src/res/ext/dwmAggregatedData.json @@ -0,0 +1 @@ +[{"type":"Probabilistic Map","name":"Probabilistic Map for Arcuate_Anterior - Left","regionName":[{"regionName":"Arcuate_Anterior - Left","relationship":"equals"}],"files":[{"filename":"Probabilistic Map for Arcuate_Anterior - Left","name":"Probabilistic Map for Arcuate_Anterior - Left","mimetype":"application/nifti","properties":{"name":null,"description":"","publications":[],"associatedRegion":"Arcuate_Anterior - Left","associatedParcellation":"Fibre Bundle Atlas - Long Bundle","datasetInfo":"MNIColin27_PMap.json"},"url":"https://neuroglancer-dev.humanbrainproject.org/precomputed/Fiber_Bundle/DWM_atlas/left-hemisphere/Probability_Maps/Arcuate_Anterior_Left.nii"}],"targetParcellation":"Fibre Bundle Atlas - Long Bundle"},{"type":"Probabilistic Map","name":"Probabilistic Map for Arcuate - Left","regionName":[{"regionName":"Arcuate - Left","relationship":"equals"}],"files":[{"filename":"Probabilistic Map for Arcuate - Left","name":"Probabilistic Map for Arcuate - Left","mimetype":"application/nifti","properties":{"name":null,"description":"","publications":[],"associatedRegion":"Arcuate - 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Long Bundle"},{"type":"Probabilistic Map","name":"Probabilistic Map for Cingulum_Long - Left","regionName":[{"regionName":"Cingulum_Long - Left","relationship":"equals"}],"files":[{"filename":"Probabilistic Map for Cingulum_Long - Left","name":"Probabilistic Map for Cingulum_Long - Left","mimetype":"application/nifti","properties":{"name":null,"description":"","publications":[],"associatedRegion":"Cingulum_Long - Left","associatedParcellation":"Fibre Bundle Atlas - Long Bundle","datasetInfo":"MNIColin27_PMap.json"},"url":"https://neuroglancer-dev.humanbrainproject.org/precomputed/Fiber_Bundle/DWM_atlas/left-hemisphere/Probability_Maps/Cingulum_Long_Left.nii"}],"targetParcellation":"Fibre Bundle Atlas - Long Bundle"},{"type":"Probabilistic Map","name":"Probabilistic Map for Cingulum_Short - Left","regionName":[{"regionName":"Cingulum_Short - Left","relationship":"equals"}],"files":[{"filename":"Probabilistic Map for Cingulum_Short - Left","name":"Probabilistic Map for Cingulum_Short - Left","mimetype":"application/nifti","properties":{"name":null,"description":"","publications":[],"associatedRegion":"Cingulum_Short - 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Long Bundle"},{"type":"Probabilistic Map","name":"Probabilistic Map for CorticoSpinalTract - Left","regionName":[{"regionName":"CorticoSpinalTract - Left","relationship":"equals"}],"files":[{"filename":"Probabilistic Map for CorticoSpinalTract - Left","name":"Probabilistic Map for CorticoSpinalTract - Left","mimetype":"application/nifti","properties":{"name":null,"description":"","publications":[],"associatedRegion":"CorticoSpinalTract - Left","associatedParcellation":"Fibre Bundle Atlas - Long Bundle","datasetInfo":"MNIColin27_PMap.json"},"url":"https://neuroglancer-dev.humanbrainproject.org/precomputed/Fiber_Bundle/DWM_atlas/left-hemisphere/Probability_Maps/CorticoSpinalTract_Left.nii"}],"targetParcellation":"Fibre Bundle Atlas - Long Bundle"},{"type":"Probabilistic Map","name":"Probabilistic Map for Fornix - Left","regionName":[{"regionName":"Fornix - Left","relationship":"equals"}],"files":[{"filename":"Probabilistic Map for Fornix - Left","name":"Probabilistic Map for Fornix - Left","mimetype":"application/nifti","properties":{"name":null,"description":"","publications":[],"associatedRegion":"Fornix - 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Long Bundle"},{"type":"Probabilistic Map","name":"Probabilistic Map for InferiorLongitudinal - Left","regionName":[{"regionName":"InferiorLongitudinal - Left","relationship":"equals"}],"files":[{"filename":"Probabilistic Map for InferiorLongitudinal - Left","name":"Probabilistic Map for InferiorLongitudinal - Left","mimetype":"application/nifti","properties":{"name":null,"description":"","publications":[],"associatedRegion":"InferiorLongitudinal - Left","associatedParcellation":"Fibre Bundle Atlas - Long Bundle","datasetInfo":"MNIColin27_PMap.json"},"url":"https://neuroglancer-dev.humanbrainproject.org/precomputed/Fiber_Bundle/DWM_atlas/left-hemisphere/Probability_Maps/InferiorLongitudinal_Left.nii"}],"targetParcellation":"Fibre Bundle Atlas - Long Bundle"},{"type":"Probabilistic Map","name":"Probabilistic Map for Uncinate - Left","regionName":[{"regionName":"Uncinate - Left","relationship":"equals"}],"files":[{"filename":"Probabilistic Map for Uncinate - Left","name":"Probabilistic Map for Uncinate - 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rh_PrC-SM_0","regionName":[{"regionName":"rh_PrC-SM_0","relationship":"equals"}],"files":[{"filename":"Probabilistic Map for rh_PrC-SM_0","name":"Probabilistic Map for rh_PrC-SM_0","mimetype":"application/nifti","properties":{"name":null,"description":"","publications":[],"associatedRegion":"rh_PrC-SM_0","associatedParcellation":"Fibre Bundle Atlas - Short Bundle","datasetInfo":"MNIColin27_PMap.json"},"url":"https://neuroglancer-dev.humanbrainproject.org/precomputed/Fiber_Bundle/SWM_atlas/right-hemisphere/Probability_Maps/rh_PrC-SM_0.nii"}],"targetParcellation":"Fibre Bundle Atlas - Short Bundle"}],[{"type":"Probabilistic Map","name":"Probabilistic Map for rh_PrC-SP_0","regionName":[{"regionName":"rh_PrC-SP_0","relationship":"equals"}],"files":[{"filename":"Probabilistic Map for rh_PrC-SP_0","name":"Probabilistic Map for rh_PrC-SP_0","mimetype":"application/nifti","properties":{"name":null,"description":"","publications":[],"associatedRegion":"rh_PrC-SP_0","associatedParcellation":"Fibre Bundle Atlas - Short Bundle","datasetInfo":"MNIColin27_PMap.json"},"url":"https://neuroglancer-dev.humanbrainproject.org/precomputed/Fiber_Bundle/SWM_atlas/right-hemisphere/Probability_Maps/rh_PrC-SP_0.nii"}],"targetParcellation":"Fibre Bundle Atlas - Short Bundle"}],[{"type":"Probabilistic Map","name":"Probabilistic Map for rh_RAC-SF_0","regionName":[{"regionName":"rh_RAC-SF_0","relationship":"equals"}],"files":[{"filename":"Probabilistic Map for rh_RAC-SF_0","name":"Probabilistic Map for rh_RAC-SF_0","mimetype":"application/nifti","properties":{"name":null,"description":"","publications":[],"associatedRegion":"rh_RAC-SF_0","associatedParcellation":"Fibre Bundle Atlas - Short 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Bundle Atlas - Short Bundle","datasetInfo":"MNIColin27_PMap.json"},"url":"https://neuroglancer-dev.humanbrainproject.org/precomputed/Fiber_Bundle/SWM_atlas/right-hemisphere/Probability_Maps/rh_Tr-SF_0.nii"}],"targetParcellation":"Fibre Bundle Atlas - Short Bundle"}]] \ No newline at end of file diff --git a/src/services/stateStore.service.ts b/src/services/stateStore.service.ts index e685d8395fbfbe998bb4ab6b8f6d39ead2b71a1e..55fb393cea3adffdad6585e07fd12b41fa889e8e 100644 --- a/src/services/stateStore.service.ts +++ b/src/services/stateStore.service.ts @@ -1,14 +1,19 @@ import { Action } from '@ngrx/store' import { filter } from 'rxjs/operators'; +import { NgAnalyzeModulesHost } from '@angular/compiler'; export const NEWVIEWER = 'NEWVIEWER' export const FETCHED_TEMPLATES = 'FETCHED_TEMPLATES' export const SELECT_PARCELLATION = `SELECT_PARCELLATION` export const SELECT_REGIONS = `SELECT_REGIONS` +export const LABELIDX_MAP = 'LABELIDX_MAP' export const CHANGE_NAVIGATION = 'CHANGE_NAVIGATION' +export const FETCHED_DATAENTRIES = 'FETCHED_DATAENTRIES' +export const FETCHED_METADATA = 'FETCHED_METADATA' + export interface ViewerStateInterface{ fetchedTemplates : any[] @@ -34,19 +39,34 @@ export interface NewViewerAction extends Action{ selectParcellation :any } +export interface DatasetAction extends Action{ + fetchedDataEntries : DataEntry[] + fetchedMetadataMap : Map<string,Map<string,{properties:Property}>> +} + +export interface DataStateInterface{ + fetchedDataEntries : DataEntry[] + + /** + * Map that maps parcellation name to a Map, which maps datasetname to Property Object + */ + fetchedMetadataMap : Map<string,Map<string,{properties:Property}>> +} + export function newViewer(state:any,action:NewViewerAction){ switch(action.type){ case NEWVIEWER: return Object.assign({},state,{ templateSelected:action.selectTemplate, - parcellationSelected : action.selectParcellation + parcellationSelected : action.selectParcellation, + regionsSelected : [] }) default : return state } } -export function changeState(state:ViewerStateInterface,action:AtlasAction){ +export function viewerState(state:ViewerStateInterface,action:AtlasAction){ switch(action.type){ case FETCHED_TEMPLATES : { return Object.assign({},state,{fetchedTemplates:action.fetchedTemplate}) @@ -54,26 +74,41 @@ export function changeState(state:ViewerStateInterface,action:AtlasAction){ case CHANGE_NAVIGATION : { return Object.assign({},state,{navigation : action.changeNavigation}) } - // case SELECT_TEMPLATE : { - // /* check for query param */ - // return Object.assign({},state,{ - // templateSelected : action.selectTemplate, - // parcellationSelected : action.selectTemplate.parcellations[0] - // }) - // } case SELECT_PARCELLATION : { - return Object.assign({},state,{parcellationSelected : action.selectParcellation}) + return Object.assign({},state,{ + parcellationSelected : action.selectParcellation, + regionsSelected : [] + }) } case SELECT_REGIONS : { return Object.assign({},state,{regionsSelected : action.selectRegions}) } + case LABELIDX_MAP : { + return Object.assign({},state,{ + }) + } default : return state } } +export function dataStore(state:any,action:DatasetAction){ + switch (action.type){ + case FETCHED_DATAENTRIES: { + return Object.assign({},state,{ + fetchedDataEntries : action.fetchedDataEntries + }) + } + case FETCHED_METADATA : { + return Object.assign({},state,{ + fetchedMetadataMap : action.fetchedMetadataMap + }) + } + } +} + export function safeFilter(key:string){ - return filter((state:ViewerStateInterface)=> + return filter((state:any)=> typeof state !== 'undefined' && typeof state[key] !== 'undefined') } @@ -82,4 +117,40 @@ export function extractLabelIdx(region:any):number[]{ return region.children.reduce((acc,item)=>{ return acc.concat(extractLabelIdx(item)) },[]).concat( region.labelIndex ? region.labelIndex : [] ) +} + +export interface DataEntry{ + type : string + name : string + regionName : { + regionName : string, + relationship : string + }[] + + properties : Property + + files : File[] +} + +export interface File{ + filename : string + name : string + mimetype : string + url? : string + data? : any + targetParcellation : string +} + +export interface Property{ + description : string + publications : Publication[] +} + +export interface Publication{ + doi : string + citation : string +} + +export interface DataTypeMetadata{ + } \ No newline at end of file diff --git a/src/ui/banner/banner.component.ts b/src/ui/banner/banner.component.ts index b9d185fa8af66517a3f5b7eb740b1079fb931473..42a930934342645838635d85d61aa899c5978794 100644 --- a/src/ui/banner/banner.component.ts +++ b/src/ui/banner/banner.component.ts @@ -3,6 +3,7 @@ import { Store, select } from "@ngrx/store"; import { ViewerStateInterface, safeFilter, SELECT_PARCELLATION, extractLabelIdx, SELECT_REGIONS, NEWVIEWER } from "../../services/stateStore.service"; import { Observable } from "rxjs"; import { map, filter } from "rxjs/operators"; +import { FilterNameBySearch } from "../../util/pipes/filterNameBySearch.pipe"; @Component({ selector : 'atlas-banner', @@ -78,7 +79,8 @@ export class AtlasBanner{ }) } - handleClickRegion(region:any){ + handleClickRegion(obj:any){ + const region = obj.inputItem const selectedSet = new Set(extractLabelIdx(region)) const intersection = new Set([...this.selectedRegions.map(r=>r.labelIndex)].filter(v=>selectedSet.has(v))) @@ -119,6 +121,14 @@ export class AtlasBanner{ return '' } + filterTreeBySearch(node:any):boolean{ + return this.filterNameBySearchPipe.transform([node.name],this.searchTerm) + } + + temp_filterTreeBySearch(node:any):boolean{ + return + } + clearRegions(event:Event){ event.stopPropagation() event.preventDefault() @@ -127,4 +137,6 @@ export class AtlasBanner{ selectRegions : [] }) } + + filterNameBySearchPipe = new FilterNameBySearch() } \ No newline at end of file diff --git a/src/ui/banner/banner.style.css b/src/ui/banner/banner.style.css index 972d387fe768ffda730b2f746a4971a789012046..30f37e29ad00037b2cd59c0e2c9d2cda3798afb8 100644 --- a/src/ui/banner/banner.style.css +++ b/src/ui/banner/banner.style.css @@ -52,7 +52,7 @@ div[treeContainer] :host-context([darktheme="true"]) div[treeContainer] { background-color:rgba(30,30,30,0.8); - color:rgba(255,255,255,0.8); + color:rgba(255,255,255,1.0); } div[hideScrollbarcontainer] diff --git a/src/ui/banner/banner.template.html b/src/ui/banner/banner.template.html index e694207f3b009a25d81d3d10e1a59d4d227bdfe2..2b09f5ad1b06f85608193369515b4b375dec3896 100644 --- a/src/ui/banner/banner.template.html +++ b/src/ui/banner/banner.template.html @@ -46,6 +46,7 @@ *ngFor = "let child of selectedParcellation.regions" (mouseclicktree) = "handleClickRegion($event)" [renderNode]="(displayTreeNode).bind(this)" + [searchFilter]="(filterTreeBySearch).bind(this)" [inputItem]="child"> </tree> </div> diff --git a/src/ui/databrowser/databrowser.component.ts b/src/ui/databrowser/databrowser.component.ts new file mode 100644 index 0000000000000000000000000000000000000000..2e43a976bb03ed08a127aa0b009f56b0f1c973c6 --- /dev/null +++ b/src/ui/databrowser/databrowser.component.ts @@ -0,0 +1,138 @@ +import { Component, ChangeDetectionStrategy } from "@angular/core"; +import { Store, select } from "@ngrx/store"; +import { DataStateInterface, Property, safeFilter, DataEntry, File, SELECT_REGIONS } from "../../services/stateStore.service"; +import { map, filter } from "rxjs/operators"; +import { PathToNestedChildren, HasPathProperty } from "../../util/pipes/pathToNestedChildren.pipe"; +import { CopyPropertyPipe } from "../../util/pipes/copyProperty.pipe"; +import { TreeComponent } from "../../components/tree/tree.component"; + +@Component({ + selector : 'data-browser', + templateUrl : './databrowser.template.html', + styleUrls : [ + `./databrowser.style.css` + ] +}) + +export class DataBrowserUI{ + + hitsPerPage : number = 15 + currentPage : number = 0 + + selectedRegions : any[] = [] + + metadataMap : Map<string,Map<string,{properties:Property}>> + dataEntries : DataEntry[] = [] + hideDataTypes : Set<string> = new Set() + + private regionsLabelIndexMap : Map<number,any> = new Map() + + constructor(private store : Store<DataStateInterface>){ + + this.store.pipe( + select('viewerState'), + safeFilter('regionsSelected'), + map(state=>state.regionsSelected) + ) + .subscribe(rs=>this.selectedRegions = rs) + + /* TODO may need to unsubscribe later */ + this.store.pipe( + select('dataStore'), + safeFilter('fetchedMetadataMap'), + map(v=>v.fetchedMetadataMap) + ) + .subscribe(map=>this.metadataMap = map) + + /* TODO may need to unsubscribe later */ + this.store.pipe( + select('dataStore'), + safeFilter('fetchedDataEntries'), + map(v=>v.fetchedDataEntries) + ) + .subscribe(arr=>(this.dataEntries = arr,this.TEMP())) + + /* TODO may need to unsubscribe later */ + this.store.pipe( + select('newViewer'), + filter(state=>typeof state !== 'undefined') + ) + .subscribe(data=> + this.handleParcellationSelection(data.parcellationSelected.regions)) + + this.store.pipe( + select('viewerState'), + safeFilter('parcellationSelected') + ) + .subscribe(parcellation=> + this.handleParcellationSelection(parcellation.regions)) + } + + regions : any[] = [] + + handleParcellationSelection(regions:any[]){ + this.mapRegions(regions) + this.regions = Array.from(this.regionsLabelIndexMap.values()) + } + + paginationChange(pageNum:number){ + this.currentPage = pageNum + } + + serchResultFilesIsArray(files:any){ + return typeof files !== 'undefined' && + files !== null && + files.constructor === Array + } + + renderNode(file:HasPathProperty&File){ + return `${file.name ? file.name : file.path}` + } + + TEMP(){ + } + + handleTreeNodeClick(obj:{inputItem:any,node:TreeComponent}){ + obj.node.childrenExpanded = !obj.node.childrenExpanded + } + + /* TODO transform this into functional */ + private mapRegions(regions:any[]){ + regions.forEach((region:any)=>{ + if(region.labelIndex){ + this.regionsLabelIndexMap.set(region.labelIndex,region) + } + if(region.children){ + this.mapRegions(region.children) + } + }) + } + + get databrowserHeaderText() : string{ + return this.selectedRegions.length === 0 ? + `No regions selected. Listing all datasets grouped by associated regions.` : + `${this.selectedRegions.length} region${this.selectedRegions.length > 1 ? 's' : ''} selected.` + } + + clearAllRegions(){ + this.store.dispatch({ + type : SELECT_REGIONS, + selectRegions : [] + }) + } + + typeVisible(type:string){ + return !this.hideDataTypes.has(type) + } + + toggleTypeVisibility(type:string){ + this.hideDataTypes.has(type) ? + this.hideDataTypes.delete(type) : + this.hideDataTypes.add(type) + + /* Somehow necessary, or else Angular will not mark for change */ + this.hideDataTypes = new Set( + [...this.hideDataTypes] + ) + } +} \ No newline at end of file diff --git a/src/ui/databrowser/databrowser.style.css b/src/ui/databrowser/databrowser.style.css new file mode 100644 index 0000000000000000000000000000000000000000..7b8c15c0bd422be1ba29432a01aa0ab6c643e4d1 --- /dev/null +++ b/src/ui/databrowser/databrowser.style.css @@ -0,0 +1,53 @@ +div[heading] +{ + padding : 0.5em 1em; + white-space: nowrap; + overflow: hidden; +} + +[dataentry] +{ + width:100%; +} + +[dataentry] div[heading] +{ + padding : 0.4em 1.6em; + background-color:rgba(0,0,0,0.2); +} + +[dataentry] div[body] +{ + padding : 0.4em 2.0em; + background-color:rgba(0,0,0,0.3); +} + +div[databrowserheader] +{ + padding : 0.5em 1.0em; + background-color:rgba(128,128,128,0.2); +} + +div[databrowserheader] > * +{ + padding : 0; + margin : 0 ; + border : 0 ; +} + +div[filterBlock] +{ + padding : 0.5em 1em; +} + +div.clickable:hover +{ + color:#dbb556; + cursor:default; +} + +div.noResultClass +{ + color:rgba(128,128,128,0.8); + text-decoration: line-through; +} \ No newline at end of file diff --git a/src/ui/databrowser/databrowser.template.html b/src/ui/databrowser/databrowser.template.html new file mode 100644 index 0000000000000000000000000000000000000000..4b95ec135e6eb5bbeff1c6e0a673887bcab22f0c --- /dev/null +++ b/src/ui/databrowser/databrowser.template.html @@ -0,0 +1,87 @@ +<!-- Header --> +<div databrowserheader> + <span> + {{ databrowserHeaderText }} + </span> + <small + *ngIf = "selectedRegions.length > 0" + class = "btn btn-link" + (click) = "clearAllRegions()"> + clear all + </small> +</div> + +<!-- Filter --> +<div filterBlock> + <div> + Filter + </div> + <div + *ngFor = "let type of dataEntries | getUniqueProperty : 'type' " + class = "clickable" + (click)="toggleTypeVisibility(type)"> + <small> + <i + *ngIf = "typeVisible(type)" + class = "glyphicon glyphicon-check"> + </i> + <i + *ngIf = "!typeVisible(type)" + class = "glyphicon glyphicon-unchecked"> + </i> + </small> + <small> + {{ type }} + </small> + </div> +</div> + +<!-- Data --> +<div + *ngFor = "let data of dataEntries | groupDatasetByRegion : regions | filterRegionDataEntries : selectedRegions | searchResultPagination : currentPage : hitsPerPage"> + <panel + [collapseBody] = "true" + [bodyCollapsable] = "true"> + <div [ngClass] = "(data.searchResults | filterDataEntriesByType : hideDataTypes).length === 0 ? 'noResultClass' : ''" heading> + <span> + {{ data.region ? data.region.name : 'Not associated with any region' }} + </span> + <span class = "mute-text"> + ({{ (data.searchResults | filterDataEntriesByType : hideDataTypes).length }}) + </span> + </div> + <div body> + <panel + *ngFor = "let searchResult of data.searchResults | filterDataEntriesByType : hideDataTypes" + [collapseBody] = "true" + [bodyCollapsable] = "true" + dataentry> + + <div heading> + {{ searchResult.name }} + </div> + + <div body> + <tree + *ngFor = "let item of searchResult.files | copyProperty : 'filename' : 'path' | pathToNestedChildren" + [childrenExpanded] = "false" + [renderNode] = "renderNode" + (mouseclicktree) = "handleTreeNodeClick($event)" + [inputItem] = " item "> + + </tree> + </div> + </panel> + </div> + </panel> +</div> + +<!-- pagination --> +<pagination-component + *ngIf = "(dataEntries | groupDatasetByRegion : regions).length > 0" + [hitsPerPage]="hitsPerPage" + [total] = "(dataEntries | groupDatasetByRegion : regions| filterRegionDataEntries : selectedRegions).length" + [currentPage]="currentPage" + (paginationChange)="paginationChange($event)"> + +</pagination-component> \ No newline at end of file diff --git a/src/ui/fileviewer/chart.interface.ts b/src/ui/fileviewer/chart.interface.ts new file mode 100644 index 0000000000000000000000000000000000000000..4a1371704fa6515fb8f0226ff5d2b0f51debd94b --- /dev/null +++ b/src/ui/fileviewer/chart.interface.ts @@ -0,0 +1,74 @@ +import { ChartOptions } from "chart.js"; + +import merge from 'lodash.merge' + +export interface ScaleOptionInterface{ + type? : string + display? : boolean + gridLines? : GridLinesOptionInterface + ticks? :ScaleTickOptionInterface + scaleLabel? : ScaleLabelInterface +} + +export interface GridLinesOptionInterface{ + display? : boolean + color? : string +} + +export interface ScaleTickOptionInterface{ + min? : number + max? : number + stepSize? : number + backdropColor? : string + showLabelBackdrop? : boolean + suggestedMin? : number + suggestedMax? : number + beginAtZero? : boolean + fontColor? : string +} + +export interface ChartColor{ + backgroundColor? : string + borderColor? : string + pointBackgroundColor? : string + pointBorderColor? : string + pointHoverBackgroundColor? : string + pointHoverBorderColor? : string +} + +export interface DatasetInterface{ + labels : string[] | number[] + datasets : Dataset[] +} + +export interface Dataset{ + data : number[] + label? : string + borderWidth? : number + borderDash? : number[] + fill? :string|number|boolean + backgroundColor : string +} + +export interface LegendInterface{ + display? : boolean + labels? : { + fontColor? : string + } +} + +export interface TitleInterfacce{ + display? : boolean + text? : string + fontColor? : string +} + +export interface ScaleLabelInterface{ + labelString? : string + fontColor? : string + display? : boolean +} + +export const applyOption = (defaultOption:ChartOptions,option?:Partial<ChartOptions>)=>{ + merge(defaultOption,option) +} \ No newline at end of file diff --git a/src/ui/fileviewer/fileviewer.component.ts b/src/ui/fileviewer/fileviewer.component.ts new file mode 100644 index 0000000000000000000000000000000000000000..0a3f5ff8b2c274cef867f7a8047e7a004461884b --- /dev/null +++ b/src/ui/fileviewer/fileviewer.component.ts @@ -0,0 +1,75 @@ +import { Component, Input, OnChanges, OnDestroy, AfterViewInit, ViewChild, ElementRef } from '@angular/core' + +import { DomSanitizer } from '@angular/platform-browser'; +import { DataEntry, File } from '../../services/stateStore.service'; + +@Component({ + selector : 'file-viewer', + templateUrl : './fileviewer.template.html' , + styleUrls : [ + './fileviewer.style.css' + ] +}) + +export class FileViewer implements OnChanges,OnDestroy,AfterViewInit{ + @Input() searchResultFile : File + @ViewChild('childChart') childChart : ChartComponentInterface + + constructor(private sanitizer:DomSanitizer){ + } + + private _downloadUrl : string + private _pngDownloadUrl : string + + ngOnDestroy(){ + if(this._downloadUrl){ + URL.revokeObjectURL(this._downloadUrl) + } + if(this._pngDownloadUrl){ + URL.revokeObjectURL(this._pngDownloadUrl) + } + } + + ngOnChanges(){ + if(this._downloadUrl){ + URL.revokeObjectURL(this._downloadUrl) + } + if(!this.searchResultFile.url && this.searchResultFile.data){ + const stringJson = JSON.stringify(this.searchResultFile.data) + const newBlob = new Blob([stringJson],{type:'application/octet-stream'}) + this._downloadUrl = URL.createObjectURL(newBlob) + } + } + + /* seems a bit buggy right now */ + ngAfterViewInit(){ + if(this.childChart){ + (<HTMLCanvasElement>this.childChart.canvas.nativeElement).toBlob((blob)=>{ + this._pngDownloadUrl = URL.createObjectURL(blob) + },'image/png') + } + } + + get downloadUrl(){ + return this.searchResultFile.url ? + this.searchResultFile.url : + this._downloadUrl ? + this.sanitizer.bypassSecurityTrustResourceUrl(this._downloadUrl) : + null + } + + get downloadName(){ + return this.searchResultFile.filename + } + + get downloadPng(){ + return this._pngDownloadUrl ? + this.sanitizer.bypassSecurityTrustResourceUrl(this._pngDownloadUrl) : + null + } +} + +interface ChartComponentInterface{ + canvas : ElementRef +} + diff --git a/src/ui/fileviewer/fileviewer.style.css b/src/ui/fileviewer/fileviewer.style.css new file mode 100644 index 0000000000000000000000000000000000000000..b5791c17b813a33244a86d77d71e48ce4c92a1a7 --- /dev/null +++ b/src/ui/fileviewer/fileviewer.style.css @@ -0,0 +1,10 @@ +small#captions +{ + display:inline-block; + margin:0 1em; +} + +div[emptyRow] +{ + margin-bottom:-1em; +} \ No newline at end of file diff --git a/src/ui/fileviewer/fileviewer.template.html b/src/ui/fileviewer/fileviewer.template.html new file mode 100644 index 0000000000000000000000000000000000000000..02ef18d7f41e96886ed162ffd281374cfd75310f --- /dev/null +++ b/src/ui/fileviewer/fileviewer.template.html @@ -0,0 +1,73 @@ + +<!-- file viewer --> +<div + *ngIf = "searchResultFile" + [ngSwitch]="searchResultFile.mimetype"> + + <div emptyRow *ngSwitchCase = "'application/octet-stream'"> + <!-- downloadable data --> + </div> + + <!-- image --> + <div *ngSwitchCase="'image/jpeg'" > + <!-- TODO figure out a more elegant way of dealing with draggable img --> + <img draggable = "false" [src] = "searchResultFile.url" /> + </div> + + <!-- data container --> + <div [ngSwitch]="searchResultFile.data.chartType" *ngSwitchCase="'application/json'"> + <radar-chart + #childChart + [colors] = "searchResultFile.data.colors" + [options] = "searchResultFile.data.chartOptions" + [labels]="searchResultFile.data.labels" + [radarDatasets]="searchResultFile.data.datasets" + *ngSwitchCase="'radar'"> + + </radar-chart> + <line-chart + #childChart + [colors] = "searchResultFile.data.colors" + [options] = "searchResultFile.data.chartOptions" + [lineDatasets] = "searchResultFile.data.datasets" + *ngSwitchCase = "'line'"> + + </line-chart> + <div *ngSwitchDefault> + The json file is not a chart. I mean, we could dump the json, but would it really help? + </div> + </div> + <div *ngSwitchCase = "'application/nifti'"> + APPLICATION NIFTI + <!-- <dedicated-view-controller + [dedicatedViewString]="'nifti://'+searchResultFile.url"> + + </dedicated-view-controller> --> + </div> + <div *ngSwitchCase = "'application/nehuba-layer'"> + APPLICATION NEHUBA LAYER + <!-- <dedicated-view-controller + [dedicatedViewString]="'nehuba-layer://'+searchResultFile.url" + [dedicatedViewNehubaLayerObject]="searchResultFile.data"> + + </dedicated-view-controller> --> + </div> + <div *ngSwitchDefault> + The selected file with the mimetype {{ searchResultFile.mimetype }} could not be displayed. + </div> +</div> + +<!-- caption --> +<readmore *ngIf = "searchResultFile.properties.description"> + <small id = "captions"> + {{ searchResultFile.properties.description }} + </small> +</readmore> + +<div *ngIf = "downloadUrl"> + <a [href]="downloadUrl" target = "_blank" class = "btn btn-link" download>Download File</a> +</div> + +<div *ngIf = "downloadPng"> + <a [href] = "downloadPng" target = "_blank" class = "btn btn-link" download>Download Chart as Image</a> +</div> \ No newline at end of file diff --git a/src/ui/fileviewer/line/line.chart.component.ts b/src/ui/fileviewer/line/line.chart.component.ts new file mode 100644 index 0000000000000000000000000000000000000000..3ff42f591ed6c504f60aa591cc77a7627ae9f3ce --- /dev/null +++ b/src/ui/fileviewer/line/line.chart.component.ts @@ -0,0 +1,149 @@ +import { Component, Input, OnChanges, ElementRef, ViewChild } from '@angular/core' +import { DatasetInterface, ChartColor, ScaleOptionInterface, LegendInterface, TitleInterfacce, applyOption } from '../chart.interface' + +import { ChartOptions, LinearTickOptions,ChartDataSets } from 'chart.js'; +import { Color } from 'ng2-charts'; +@Component({ + selector : `line-chart`, + templateUrl : './line.chart.template.html', + styleUrls : [ + `./line.chart.style.css` + ], +}) +export class LineChart implements OnChanges{ + @ViewChild('canvas') canvas : ElementRef + + /** + * labels of each of the columns, spider web edges + */ + @Input() labels : string[] + + /** + * shown on the legend, different lines + */ + @Input() lineDatasets : LineDatasetInputInterface[] = [] + + /** + * colors of the datasetes + */ + @Input() colors : ChartColor[] = [] + + @Input() options : any + + mousescroll(_ev:MouseWheelEvent){ + + /** + * temporarily disabled + */ + + } + + maxY : number + + xAxesTicks : LinearTickOptions = { + stepSize : 20, + fontColor : 'white' + } + chartOption : LineChartOption = { + scales : { + xAxes : [{ + type : 'linear', + gridLines : { + color : 'rgba(128,128,128,0.5)' + }, + ticks : this.xAxesTicks, + scaleLabel : { + display : true, + labelString : 'X Axes label', + fontColor : 'rgba(200,200,200,1.0)' + } + }], + yAxes : [{ + gridLines : { + color : 'rgba(128,128,128,0.5)' + }, + ticks : { + fontColor : 'white', + }, + scaleLabel : { + display : true, + labelString : 'Y Axes label', + fontColor : 'rgba(200,200,200,1.0)' + } + }], + }, + legend : { + display : true + }, + title : { + display : true, + text : 'Title', + fontColor : 'rgba(255,255,255,1.0)' + }, + color : [{ + backgroundColor : `rgba(255,255,255,0.2)` + }], + animation :undefined, + elements : + { + point : { + radius : 0, + hoverRadius : 8, + hitRadius : 4 + } + } + + } + + chartDataset : DatasetInterface = { + labels : [], + datasets : [] + } + + shapedLineChartDatasets : ChartDataSets[] + + ngOnChanges(){ + this.shapedLineChartDatasets = this.lineDatasets.map(lineDataset=>({ + data : lineDataset.data.map((v,idx)=>({ + x : idx, + y : v + })), + fill : 'origin' + })) + + this.maxY = this.chartDataset.datasets.reduce((max,dataset)=>{ + return Math.max( + max, + dataset.data.reduce((max,number)=>{ + return Math.max(number,max) + },0)) + },0) + + applyOption(this.chartOption,this.options) + + // this.colors = + // this.colors = [{ + // backgroundColor : 'rgba(0,255,0,0.2)' + // }] + } +} + + +export interface LineDatasetInputInterface{ + label? : string + data : number[] +} + +export interface LinearChartOptionInterface{ + scales? : { + xAxes? : ScaleOptionInterface[] + yAxes? : ScaleOptionInterface[] + } + legend? : LegendInterface + title? : TitleInterfacce + color? : Color[] +} + +interface LineChartOption extends ChartOptions{ + color? : Color[] +} \ No newline at end of file diff --git a/src/ui/fileviewer/line/line.chart.style.css b/src/ui/fileviewer/line/line.chart.style.css new file mode 100644 index 0000000000000000000000000000000000000000..4a9f715af400a2241db547d7977b39339775c4bd --- /dev/null +++ b/src/ui/fileviewer/line/line.chart.style.css @@ -0,0 +1,5 @@ +:host +{ + display:block; + margin:1em; +} \ No newline at end of file diff --git a/src/ui/fileviewer/line/line.chart.template.html b/src/ui/fileviewer/line/line.chart.template.html new file mode 100644 index 0000000000000000000000000000000000000000..545db5429ba3c437eee8c0822de03e448a39483d --- /dev/null +++ b/src/ui/fileviewer/line/line.chart.template.html @@ -0,0 +1,17 @@ +<canvas + *ngIf = "shapedLineChartDatasets" + (mousewheel)="mousescroll($event)" + width = '100%' + height = '100%' + baseChart + chartType="line" + [options]="chartOption" + [colors]="colors" + [datasets]="shapedLineChartDatasets" + [labels]="chartDataset.labels" + #canvas> +</canvas> +<span + *ngIf = "!shapedLineChartDatasets"> + datasets are required to display linear graph +</span> \ No newline at end of file diff --git a/src/ui/fileviewer/radar/radar.chart.component.ts b/src/ui/fileviewer/radar/radar.chart.component.ts new file mode 100644 index 0000000000000000000000000000000000000000..846eb22f73c7964a39dc57a02f11e328569d13e4 --- /dev/null +++ b/src/ui/fileviewer/radar/radar.chart.component.ts @@ -0,0 +1,151 @@ +import { Component, Input, OnChanges, ViewChild, ElementRef } from '@angular/core' + +import { DatasetInterface, ChartColor, ScaleOptionInterface, TitleInterfacce, LegendInterface, applyOption } from '../chart.interface'; +import { Color } from 'ng2-charts'; +@Component({ + selector : `radar-chart`, + templateUrl : './radar.chart.template.html', + styleUrls : [ + `./radar.chart.style.css` + ], +}) +export class RadarChart implements OnChanges{ + + @ViewChild('canvas') canvas : ElementRef + /** + * labels of each of the columns, spider web edges + */ + @Input() labels : string[] = [] + + /** + * shown on the legend, different lines + */ + @Input() radarDatasets : RadarDatasetInputInterface[] = [] + + /** + * colors of the datasetes + */ + @Input() colors : ChartColor[] = [] + + @Input() options : any + + mousescroll(_ev:MouseWheelEvent){ + + /** + * mouse wheel zooming disabled for now + */ + /** + * TODO the sroll up event sometimes does not get prevented for some reasons... + */ + + // ev.stopPropagation() + // ev.preventDefault() + + // this.maxY *= ev.deltaY > 0 ? 1.2 : 0.8 + // const newTicksObj = { + // stepSize : Math.ceil( this.maxY / 500 ) * 100, + // max : this.maxY + // } + + // const combineTicksObj = Object.assign({},this.chartOption.scale!.ticks,newTicksObj) + // const combineScale = Object.assign({},this.chartOption.scale,{ticks:combineTicksObj}) + // this.chartOption = Object.assign({},this.chartOption,{scale : combineScale,animation : false}) + } + + maxY : number + + chartOption : RadarChartOptionInterface = { + scale : { + gridLines : { + color : 'rgba(128,128,128,0.5)' + }, + ticks : { + showLabelBackdrop : false, + fontColor : 'white' + }, + angleLines : { + color : 'rgba(128,128,128,0.2)' + }, + pointLabels : { + fontColor : 'white' + } + }, + legend : { + display: true, + labels : { + fontColor : 'white' + } + }, + title :{ + text : 'Radar graph', + display : true, + fontColor : 'rgba(255,255,255,1.0)' + }, + color : [{ + backgroundColor : `rgba(255,255,255,0.2)` + }], + animation : false + } + + chartDataset : DatasetInterface = { + labels : [], + datasets : [] + } + + + ngOnChanges(){ + this.chartDataset = { + labels : this.labels, + datasets : this.radarDatasets.map(ds=>Object.assign({},ds,{backgroundColor : 'rgba(255,255,255,0.2)'})) + } + // this.chartDataset.datasets[0] + + this.maxY = this.chartDataset.datasets.reduce((max,dataset)=>{ + return Math.max( + max, + dataset.data.reduce((max,number)=>{ + return Math.max(number,max) + },0)) + },0) + + applyOption(this.chartOption,this.options) + // this.colors = [ + // { + // borderColor : 'rgba(255,255,255,1)' + // }, + // { + // borderColor : ' rgba(255,255,255,1)', + // } + // ] + + // console.log(this.chartDataset) + } +} + +export interface RadarDatasetInputInterface{ + label : string + data : number[] +} + +export interface RadarChartOptionInterface{ + scale? : ScaleOptionInterface&RadarScaleOptionAdditionalInterface + animation? : any + legend? : LegendInterface + title? : TitleInterfacce + color? :Color[] +} + +interface RadarScaleOptionAdditionalInterface{ + angleLines? :AngleLineInterface + pointLabels?:PointLabelInterface +} + +interface AngleLineInterface{ + display? : boolean + color? : string + lineWidth? : number +} + +interface PointLabelInterface{ + fontColor? : string +} \ No newline at end of file diff --git a/src/ui/fileviewer/radar/radar.chart.style.css b/src/ui/fileviewer/radar/radar.chart.style.css new file mode 100644 index 0000000000000000000000000000000000000000..4a9f715af400a2241db547d7977b39339775c4bd --- /dev/null +++ b/src/ui/fileviewer/radar/radar.chart.style.css @@ -0,0 +1,5 @@ +:host +{ + display:block; + margin:1em; +} \ No newline at end of file diff --git a/src/ui/fileviewer/radar/radar.chart.template.html b/src/ui/fileviewer/radar/radar.chart.template.html new file mode 100644 index 0000000000000000000000000000000000000000..b45ae24429a8121d3ec8444921d6ea1bff60a38c --- /dev/null +++ b/src/ui/fileviewer/radar/radar.chart.template.html @@ -0,0 +1,17 @@ +<canvas + #canvas + (mousewheel)="mousescroll($event)" + width = '100%' + height = '100%' + *ngIf = "chartDataset.datasets.length > 0 && chartDataset.labels.length > 0" + baseChart + chartType="radar" + [options]="chartOption" + [colors]="colors" + [datasets]="chartDataset.datasets" + [labels]="chartDataset.labels"> +</canvas> +<span + *ngIf = "chartDataset.datasets.length == 0 || chartDataset.labels.length == 0"> + datasets and labels are required to display radar +</span> \ No newline at end of file diff --git a/src/ui/nehubaContainer/nehubaContainer.component.ts b/src/ui/nehubaContainer/nehubaContainer.component.ts index 84416349449f6288540572f999776eb8087795ac..1be0b72082c9eee99c49fcd61385c1c0d2d25148 100644 --- a/src/ui/nehubaContainer/nehubaContainer.component.ts +++ b/src/ui/nehubaContainer/nehubaContainer.component.ts @@ -68,6 +68,7 @@ export class NehubaContainner implements OnInit{ this.loadedParcellation$.subscribe(this.handleParcellation) this.selectedRegions$.subscribe(regions=>{ + if(!this.nehubaViewer) return this.selectedRegionIndexSet = new Set(regions.map(r=>r.labelIndex)) this.selectedRegionIndexSet.size > 0 ? this.nehubaViewer.showSegs([...this.selectedRegionIndexSet]) : @@ -114,9 +115,11 @@ export class NehubaContainner implements OnInit{ } private handleParcellation(parcellation:any){ + if(!this.nehubaViewer) return this.mapRegions(parcellation.regions) this.nehubaViewer.regionsLabelIndexMap = this.regionsLabelIndexMap this.nehubaViewer.parcellationId = parcellation.ngId + } private createNewNehuba(template:any){ @@ -138,4 +141,58 @@ export class NehubaContainner implements OnInit{ } }) } + + /* related to info-card */ + + statusPanelRealSpace : boolean = true + + get mouseCoord():string{ + return this.nehubaViewer ? + this.statusPanelRealSpace ? + this.nehubaViewer.mousePosReal ? + Array.from(this.nehubaViewer.mousePosReal.map(n=> isNaN(n) ? 0 : n/1e6)) + .map(n=>n.toFixed(3)+'mm').join(' , ') : + '0mm , 0mm , 0mm (mousePosReal not yet defined)' : + this.nehubaViewer.mousePosVoxel ? + this.nehubaViewer.mousePosVoxel.join(' , ') : + '0 , 0 , 0 (mousePosVoxel not yet defined)' : + '0 , 0 , 0 (nehubaViewer not defined)' + } + + get onHoverSegment():string{ + if(!this.nehubaViewer) return 'nehubaViewer not yet initialised' + const region = this.regionsLabelIndexMap.get(this.nehubaViewer.mouseOverSegment) + return region ? + region.name : + this.nehubaViewer.mouseOverSegment ? + `Segment labelIndex: ${this.nehubaViewer.mouseOverSegment}` : + `` + } + + editingNavState : boolean = false + textNavigateTo(string:string){ + if(string.split(/[\s|,]+/).length>=3 && string.split(/[\s|,]+/).slice(0,3).every(entry=>!isNaN(Number(entry.replace(/mm/,''))))){ + const pos = (string.split(/[\s|,]+/).slice(0,3).map((entry,idx)=>Number(entry.replace(/mm/,''))*(this.statusPanelRealSpace ? 1000000 : 1))) + this.nehubaViewer.setNavigationState({ + position : (pos as [number,number,number]), + positionReal : this.statusPanelRealSpace + }) + // this.navigate( + // string.split(/[\s|,]+/).slice(0,3).map(entry=>Number(entry.replace(/mm/,''))*(this.statusPanelRealSpace ? 1000000 : 1)), + // 0, + // this.statusPanelRealSpace + // ) + }else{ + console.log('input did not parse to coordinates ',string) + } + } + + navigationValue(){ + return this.nehubaViewer ? + this.statusPanelRealSpace ? + Array.from(this.nehubaViewer.navPosReal.map(n=> isNaN(n) ? 0 : n/1e6)) + .map(n=>n.toFixed(3)+'mm').join(' , ') : + Array.from(this.nehubaViewer.navPosVoxel.map(n=> isNaN(n) ? 0 : n)).join(' , ') : + `[0,0,0] (neubaViewer is undefined)` + } } \ No newline at end of file diff --git a/src/ui/nehubaContainer/nehubaContainer.style.css b/src/ui/nehubaContainer/nehubaContainer.style.css index ad3ebc0057ca7ce92b71064fdc487e3d968e37b7..8e7cf156d6c8138b4b4780bd85fce3f0f0e9a795 100644 --- a/src/ui/nehubaContainer/nehubaContainer.style.css +++ b/src/ui/nehubaContainer/nehubaContainer.style.css @@ -2,4 +2,51 @@ { width:100%; height:100%; + position:relative; +} + +div[textContainer] +{ + padding-left:1em; +} + +input[navigateInput] +{ + background:none; + width : 16em; + padding-left: 0.5em; + font-size:85%; + box-shadow: inset 0px 2px 2px 2px rgba(0,0,0,0.05); +} + + +:host-context([darktheme=false]) input[navigateInput] +{ + border:rgba(0,0,0,0.2) solid 1px; +} + +:host-context([darktheme=true]) input[navigateInput] +{ + border:rgba(255,255,255,0.2) solid 1px; +} + +div[statusCard] +{ + position:absolute; + left:1em; + bottom:1em; + width : 20em; + height:7em; + pointer-events: all; +} + +:host-context([darktheme=false]) div[statusCard] +{ + background-color:rgba(230,230,230,0.8); +} + +:host-context([darktheme=true]) div[statusCard] +{ + background-color:rgba(20,20,20,0.8); + color : rgba(250,250,250,0.8); } \ No newline at end of file diff --git a/src/ui/nehubaContainer/nehubaContainer.template.html b/src/ui/nehubaContainer/nehubaContainer.template.html index 56b1e36944074a876a45efd8abddbcd57f579455..ec4140c090804519204f0435def8556cc0606363 100644 --- a/src/ui/nehubaContainer/nehubaContainer.template.html +++ b/src/ui/nehubaContainer/nehubaContainer.template.html @@ -1,4 +1,37 @@ <ng-template #container> </ng-template> <ui-splashscreen *ngIf = "!viewerLoaded"> -</ui-splashscreen> \ No newline at end of file +</ui-splashscreen> +<layout-floating-container + *ngIf = "viewerLoaded"> + <div statusCard> + + <span + class = "btn btn-link" + (click)="statusPanelRealSpace = !statusPanelRealSpace"> + {{statusPanelRealSpace ? 'RealSpace' : 'VoxelSpace'}} + </span> + + <br /> + <div textContainer> + Navigation: + <input + (keydown.enter) = "textNavigateTo(navigateInput.value)" + (keydown.tab) = "textNavigateTo(navigateInput.value)" + [ngModel] = "navigationValue()" + spellcheck = "false" + #navigateInput + navigateInput/> + + <br /> + Mouse: + <small> + {{ mouseCoord }} + </small> + <br /> + <small> + {{ onHoverSegment }} + </small> + </div> + </div> +</layout-floating-container> \ No newline at end of file diff --git a/src/ui/nehubaContainer/nehubaViewer/nehubaViewer.component.ts b/src/ui/nehubaContainer/nehubaViewer/nehubaViewer.component.ts index 5ba7f04b68d74f48aa37b182ef6932aca515631a..afcae1ca1030e3e4dab7543271405bd882205fde 100644 --- a/src/ui/nehubaContainer/nehubaViewer/nehubaViewer.component.ts +++ b/src/ui/nehubaContainer/nehubaViewer/nehubaViewer.component.ts @@ -2,8 +2,8 @@ import { Component, AfterViewInit, OnDestroy } from "@angular/core"; import * as export_nehuba from 'export_nehuba' import 'export_nehuba/dist/min/chunk_worker.bundle.js' -import { Observable, Observer } from "rxjs"; -import { takeUntil } from 'rxjs/operators' +import { Observable,Subject, Subscription } from 'rxjs' +import { combineLatest } from 'rxjs/operators' @Component({ templateUrl : './nehubaViewer.template.html', @@ -16,10 +16,34 @@ export class NehubaViewerUnit implements AfterViewInit,OnDestroy{ config : any nehubaViewer : any + _s1$ : any + _s2$ : any + _s3$ : any + _s4$ : any + _s5$ : any + _s6$ : any + _s7$ : any + + _s$ : any[] = [ + this._s1$, + this._s2$, + this._s3$, + this._s4$, + this._s5$, + this._s6$, + this._s7$ + ] + parcellationId : string regionsLabelIndexMap : Map<number,any> - shownSegment$ : any - mouseoverSegment$ : any + + navPosReal : [number,number,number] = [0,0,0] + navPosVoxel : [number,number,number] = [0,0,0] + + mousePosReal : [number,number,number] = [0,0,0] + mousePosVoxel : [number,number,number] = [0,0,0] + + viewerState : ViewerState private defaultColormap : Map<number,{red:number,green:number,blue:number}> public mouseOverSegment : number | null @@ -30,35 +54,67 @@ export class NehubaViewerUnit implements AfterViewInit,OnDestroy{ if(this.regionsLabelIndexMap){ this.loadNewParcellation() } + + window['nehubaViewer'] = this.nehubaViewer } ngOnDestroy(){ - this.nehubaViewer.dispose() - this.shownSegment$.unsubscribe() - this.mouseoverSegment$.unsubscribe() + this._s$.forEach(_s$=>{ + if(_s$) _s$.unsubscribe() + }) } public hideAllSeg(){ - this.showAllSeg() + Array.from(this.regionsLabelIndexMap.keys()).forEach(idx=> + this.nehubaViewer.hideSegment(idx,{ + name : this.parcellationId + })) this.nehubaViewer.showSegment(0,{ name : this.parcellationId }) } public showAllSeg(){ - Array.from(this.regionsLabelIndexMap.keys()).forEach(idx=> - this.nehubaViewer.hideSegment(idx,{ - name : this.parcellationId - })) + this.hideAllSeg() + this.nehubaViewer.hideSegment(0,{ + name : this.parcellationId + }) } public showSegs(array:number[]){ - this.showAllSeg() + this.hideAllSeg() + + this.nehubaViewer.hideSegment(0,{ + name : this.parcellationId + }) + array.forEach(idx=> this.nehubaViewer.showSegment(idx,{ name : this.parcellationId })) } + public setNavigationState(newViewerState:Partial<ViewerState>){ + const { + orientation, + perspectiveOrientation, + perspectiveZoom, + position, + positionReal, + zoom + } = newViewerState + + if( perspectiveZoom ) + this.nehubaViewer.ngviewer.perspectiveNavigationState.zoomFactor.restoreState(perspectiveZoom) + if( zoom ) + this.nehubaViewer.ngviewer.navigationState.zoomFactor.restoreState(zoom) + if( perspectiveOrientation ) + this.nehubaViewer.ngviewer.perspectiveNavigationState.pose.orientation.restoreState( perspectiveOrientation ) + if( orientation ) + this.nehubaViewer.ngviewer.navigationState.pose.orientation.restoreState( orientation ) + if( position ) + this.nehubaViewer.setPosition( position , positionReal ? true : false ) + } + private updateColorMap(arrayIdx:number[]){ const set = new Set(arrayIdx) const newColorMap = new Map( @@ -78,7 +134,10 @@ export class NehubaViewerUnit implements AfterViewInit,OnDestroy{ [ ...Array.from(this.regionsLabelIndexMap.keys()), ...[65535] - ] + ], + { + name : this.parcellationId + } ) this.defaultColormap = new Map( @@ -93,13 +152,41 @@ export class NehubaViewerUnit implements AfterViewInit,OnDestroy{ this.defaultColormap, { name : this.parcellationId }) - if(this.shownSegment$) this.shownSegment$.unsubscribe() - if(this.mouseoverSegment$) this.mouseoverSegment$.unsubscribe() - this.shownSegment$ = this.nehubaViewer.getShownSegmentsObservable({ + this._s$.forEach(_s$=>{ + if(_s$) _s$.unsubscribe() + }) + + this._s1$ = this.nehubaViewer.getShownSegmentsObservable({ name : this.parcellationId }).subscribe(arrayIdx=>this.updateColorMap(arrayIdx)) - this.mouseoverSegment$ = this.nehubaViewer.mouseOver.segment + + this._s2$ = this.nehubaViewer.mouseOver.segment .subscribe(obj=>this.mouseOverSegment = obj.segment) + this._s3$ = this.nehubaViewer.navigationState.all + .debounceTime(300) + .subscribe(({ orientation, perspectiveOrientation, perspectiveZoom, position, zoom })=>{ + this.viewerState = { + orientation, + perspectiveOrientation, + perspectiveZoom, + zoom, + position, + positionReal : false + } + }) + + this._s4$ = this.nehubaViewer.navigationState.position.inRealSpace + .filter(v=>typeof v !== 'undefined' && v !== null) + .subscribe(v=>this.navPosReal=v) + this._s5$ = this.nehubaViewer.navigationState.position.inVoxels + .filter(v=>typeof v !== 'undefined' && v !== null) + .subscribe(v=>this.navPosVoxel=v) + this._s6$ = this.nehubaViewer.mousePosition.inRealSpace + .filter(v=>typeof v !== 'undefined' && v !== null) + .subscribe(v=>(this.mousePosReal=v)) + this._s7$ = this.nehubaViewer.mousePosition.inVoxels + .filter(v=>typeof v !== 'undefined' && v !== null) + .subscribe(v=>(this.mousePosVoxel=v)) } private getRgb(rgb?:number[]):{red:number,green:number,blue:number}{ @@ -115,4 +202,13 @@ export class NehubaViewerUnit implements AfterViewInit,OnDestroy{ blue : rgb[2] } } -} \ No newline at end of file +} + +export interface ViewerState{ + orientation : [number,number,number,number] + perspectiveOrientation : [number,number,number,number] + perspectiveZoom : number + position : [number,number,number] + positionReal : boolean + zoom : number +} diff --git a/src/ui/ui.module.ts b/src/ui/ui.module.ts index fa6c84d4ddceb9d2d26948daf063b2f029800585..c0f49352ec4a5877ba3754a5a4198c1224879c55 100644 --- a/src/ui/ui.module.ts +++ b/src/ui/ui.module.ts @@ -6,10 +6,25 @@ import { NehubaViewerUnit } from "./nehubaContainer/nehubaViewer/nehubaViewer.co import { NehubaContainner } from "./nehubaContainer/nehubaContainer.component"; import { SplashScreen } from "./nehubaContainer/splashScreen/splashScreen.component"; import { LayoutModule } from "../layouts/layout.module"; +import { FormsModule } from "@angular/forms"; +import { DataBrowserUI } from "./databrowser/databrowser.component"; +import { GroupDatasetByRegion } from "../util/pipes/groupDataEntriesByRegion.pipe"; +import { filterRegionDataEntries } from "../util/pipes/filterRegionDataEntries.pipe"; +import { FileViewer } from "./fileviewer/fileviewer.component"; + +import { ChartsModule } from 'ng2-charts' +import { RadarChart } from "./fileviewer/radar/radar.chart.component"; +import { LineChart } from "./fileviewer/line/line.chart.component"; +import { PathToNestedChildren } from "../util/pipes/pathToNestedChildren.pipe"; +import { CopyPropertyPipe } from "../util/pipes/copyProperty.pipe"; +import { GetUniqueProperty } from "../util/pipes/getUniqueProperty.pipe"; +import { FilterDataEntriesbyType } from "../util/pipes/filterDataEntriesByType.pipe"; @NgModule({ imports : [ + ChartsModule, + FormsModule, BrowserModule, LayoutModule, ComponentsModule @@ -17,7 +32,19 @@ import { LayoutModule } from "../layouts/layout.module"; declarations : [ NehubaContainner, NehubaViewerUnit, - SplashScreen + SplashScreen, + DataBrowserUI, + FileViewer, + RadarChart, + LineChart, + + /* pipes */ + GroupDatasetByRegion, + filterRegionDataEntries, + PathToNestedChildren, + CopyPropertyPipe, + GetUniqueProperty, + FilterDataEntriesbyType ], entryComponents : [ @@ -26,7 +53,9 @@ import { LayoutModule } from "../layouts/layout.module"; ], exports : [ NehubaContainner, - NehubaViewerUnit + NehubaViewerUnit, + DataBrowserUI, + FileViewer ] }) diff --git a/src/util/pipes/copyProperty.pipe.ts b/src/util/pipes/copyProperty.pipe.ts new file mode 100644 index 0000000000000000000000000000000000000000..2b599c6293901011229b5258f8b3506c7294f35b --- /dev/null +++ b/src/util/pipes/copyProperty.pipe.ts @@ -0,0 +1,16 @@ +import { PipeTransform, Pipe } from "@angular/core"; + + +@Pipe({ + name : 'copyProperty' +}) + +export class CopyPropertyPipe implements PipeTransform{ + public transform(inputArray:any[],src:string,dest:string):any[]{ + return inputArray.map(item=>{ + const newObj = Object.assign({},item) + newObj[dest] = item[src] + return newObj + }) + } +} \ No newline at end of file diff --git a/src/util/pipes/filterDataEntries.pipe.ts b/src/util/pipes/filterDataEntries.pipe.ts new file mode 100644 index 0000000000000000000000000000000000000000..252b4611cb97bd27dd2483be4c935b378bc3e912 --- /dev/null +++ b/src/util/pipes/filterDataEntries.pipe.ts @@ -0,0 +1,15 @@ +import { Pipe, PipeTransform } from "@angular/core"; +import { DataEntry } from "../../services/stateStore.service"; + +@Pipe({ + name : 'filterDatasetSearchResult' +}) + +export class FilterDatasetSearchResult implements PipeTransform{ + public transform(datasets:DataEntry[],filterArr:{name:string,enabled:boolean}[]):DataEntry[]{ + return datasets.filter(dataset=>{ + const filter = filterArr.find(obj=>obj.name == dataset.type) + return filter ? filter.enabled : false + }) + } +} \ No newline at end of file diff --git a/src/util/pipes/filterDataEntriesByType.pipe.ts b/src/util/pipes/filterDataEntriesByType.pipe.ts new file mode 100644 index 0000000000000000000000000000000000000000..f343173f3d1261e3f8ddd933bc481ace5452df46 --- /dev/null +++ b/src/util/pipes/filterDataEntriesByType.pipe.ts @@ -0,0 +1,13 @@ +import { PipeTransform, Pipe } from "@angular/core"; +import { DataEntry } from "../../services/stateStore.service"; + + +@Pipe({ + name : 'filterDataEntriesByType' +}) + +export class FilterDataEntriesbyType implements PipeTransform{ + public transform(dataEntries:DataEntry[],hideTypeSet:Set<string>):DataEntry[]{ + return dataEntries.filter(dataEntry=>!hideTypeSet.has(dataEntry.type)) + } +} \ No newline at end of file diff --git a/src/util/pipes/filterNameBySearch.pipe.ts b/src/util/pipes/filterNameBySearch.pipe.ts new file mode 100644 index 0000000000000000000000000000000000000000..bc44138575e474581dbc2e5dfa2ee86259ff9789 --- /dev/null +++ b/src/util/pipes/filterNameBySearch.pipe.ts @@ -0,0 +1,15 @@ +import { Pipe, PipeTransform } from "@angular/core"; + + +@Pipe({ + name : 'filterNameBySearch' +}) + +export class FilterNameBySearch implements PipeTransform{ + public transform(searchFields:string[],searchTerm:string){ + return searchFields.some(searchField=>{ + const regex = new RegExp(searchTerm,'i') + return regex.test(searchField) + }) + } +} \ No newline at end of file diff --git a/src/util/pipes/filterRegionDataEntries.pipe.ts b/src/util/pipes/filterRegionDataEntries.pipe.ts new file mode 100644 index 0000000000000000000000000000000000000000..ef2c4db6736b7d9a483c70f8ec469d339e3edc0e --- /dev/null +++ b/src/util/pipes/filterRegionDataEntries.pipe.ts @@ -0,0 +1,15 @@ +import { Pipe, PipeTransform } from "@angular/core"; +import { DataEntry } from "../../services/stateStore.service"; + + +@Pipe({ + name : 'filterRegionDataEntries' +}) + +export class filterRegionDataEntries implements PipeTransform{ + public transform(arr:{region:any|null,searchResults:DataEntry[]}[],selectedRegions:any[]):{region:any|null,searchResults:DataEntry[]}[]{ + return selectedRegions.length > 0 ? + arr.filter(obj=> obj.region !== null && selectedRegions.findIndex(r=>obj.region.name === r.name) >= 0) : + arr + } +} \ No newline at end of file diff --git a/src/util/pipes/getUniqueProperty.pipe.ts b/src/util/pipes/getUniqueProperty.pipe.ts new file mode 100644 index 0000000000000000000000000000000000000000..b7754ccaace64af70eebc8eef558f0a259ba4841 --- /dev/null +++ b/src/util/pipes/getUniqueProperty.pipe.ts @@ -0,0 +1,18 @@ +import { Pipe, PipeTransform } from "@angular/core"; + + +@Pipe({ + name : 'getUniqueProperty' +}) + +export class GetUniqueProperty implements PipeTransform{ + public transform(arr:any[],prop:string):string[]{ + return [...arr.reduce((acc:Set<string>,curr)=>{ + return curr[prop] && typeof curr[prop] === 'string' ? + acc.has(curr[prop]) ? + acc : + acc.add(curr[prop]) : + acc + },new Set())] + } +} \ No newline at end of file diff --git a/src/util/pipes/groupDataEntriesByRegion.pipe.ts b/src/util/pipes/groupDataEntriesByRegion.pipe.ts new file mode 100644 index 0000000000000000000000000000000000000000..3d2ab267de27c1c0d09126929543229469c40e76 --- /dev/null +++ b/src/util/pipes/groupDataEntriesByRegion.pipe.ts @@ -0,0 +1,48 @@ +import { Pipe, PipeTransform } from "@angular/core"; +import { DataEntry } from "../../services/stateStore.service"; + +@Pipe({ + name : 'groupDatasetByRegion' +}) +export class GroupDatasetByRegion implements PipeTransform{ + public transform( + datasets:DataEntry[], + regions:any[] + ) : {region:any|null,searchResults:DataEntry[]}[] + { + + return datasets.reduce((acc,curr)=>{ + return (curr.regionName && curr.regionName.length > 0) ? + curr.regionName.reduce((acc2,reName)=>{ + const idx = acc + .findIndex(it => it.region === null ? + reName.regionName === 'none' : + it.region.name === reName.regionName ) + + return idx >= 0 ? + acc2.map((v,i)=> i === idx ? Object.assign({},v,{searchResults : v.searchResults.concat(curr)}) : v ) : + acc2.concat({ + region : this.getRegionFromRegionName(reName.regionName, regions), + searchResults : [ curr ] + }) + },acc) : + acc.findIndex(it=>it.region==null) >= 0 ? + acc.map(it=>it.region === null ? + Object.assign({},it,{ + searchResults:it.searchResults.concat(curr) + }) : + it) : + acc.concat({ + region : null, + searchResults : [curr] + }) + + },[] as {region:any|null,searchResults:DataEntry[]}[]) + } + + private getRegionFromRegionName(regionName:string,regions:any[]):any|null{ + const idx = regions.findIndex(re=>re.name == regionName) + return idx >= 0 ? regions[idx] : null + } + +} \ No newline at end of file diff --git a/src/util/pipes/pagination.pipe.ts b/src/util/pipes/pagination.pipe.ts new file mode 100644 index 0000000000000000000000000000000000000000..31f177c2e2fa1f99da7564adf08fa1aa145b216b --- /dev/null +++ b/src/util/pipes/pagination.pipe.ts @@ -0,0 +1,15 @@ +import { Pipe, PipeTransform } from "@angular/core"; + +@Pipe({ + name : 'searchResultPagination' +}) + +export class SearchResultPaginationPipe implements PipeTransform{ + private _hitsPerPage:number = 15 + private _pageNumber:number = 0 + public transform(arr:any[],pageNumber?:number,hitsPerPage?:number){ + return arr.filter((_,idx)=> + (idx >= (pageNumber === undefined ? this._pageNumber : pageNumber) * (hitsPerPage === undefined ? this._hitsPerPage : hitsPerPage)) && + idx < ((pageNumber === undefined ? this._pageNumber : pageNumber) + 1) * (hitsPerPage === undefined ? this._hitsPerPage : hitsPerPage)) + } +} \ No newline at end of file diff --git a/src/util/pipes/pathToNestedChildren.pipe.spec.ts b/src/util/pipes/pathToNestedChildren.pipe.spec.ts new file mode 100644 index 0000000000000000000000000000000000000000..90819fdbc3c2600334f5416cca29b92ed3b48f35 --- /dev/null +++ b/src/util/pipes/pathToNestedChildren.pipe.spec.ts @@ -0,0 +1,3 @@ +/** + * path to nested children should successfully convert flat array to nested objects + */ \ No newline at end of file diff --git a/src/util/pipes/pathToNestedChildren.pipe.ts b/src/util/pipes/pathToNestedChildren.pipe.ts new file mode 100644 index 0000000000000000000000000000000000000000..2ab5d634cfc4cce7797b5d14e871b237459be2b3 --- /dev/null +++ b/src/util/pipes/pathToNestedChildren.pipe.ts @@ -0,0 +1,110 @@ +import { PipeTransform, Pipe } from "@angular/core"; + +/** + * The pipe transforms a flat array to a nested array, based on the path property, following Unix file path rule + */ + +@Pipe({ + name : 'pathToNestedChildren' +}) + +export class PathToNestedChildren implements PipeTransform{ + public transform(array:HasPathProperty[],prop?:string):NestedChildren[]{ + return this.constructDoubleHeirachy(array) + } + + private constructDoubleHeirachy(array:HasPathProperty[]):NestedChildren[]{ + return array.reduce((acc:NestedChildren[],curr:HasPathProperty)=>{ + return this.checkEntryExist(acc,curr) ? + acc.map(item=> + this.checkEntryExist([item],curr) ? + this.concatItem(item,curr) : + item ) as NestedChildren[] : + acc.concat( + this.constructNewItem(curr) + ) as NestedChildren[] + },[] as NestedChildren[]) + } + + private constructNewItem(curr:HasPathProperty):NestedChildren{ + const finalPath = this.getCurrentPath(curr) === curr.path + return Object.assign({}, + finalPath ? + curr : + {},{ + path : this.getCurrentPath(curr), + children : finalPath ? + [] : + this.constructDoubleHeirachy( + [ this.getNextLevelHeirachy(curr) ] + ) + }) + } + + private concatItem(item:NestedChildren,curr:HasPathProperty):NestedChildren{ + const finalPath = this.getCurrentPath(curr) === curr.path + return Object.assign({}, + item, + finalPath ? + curr : + {}, + { + children : item.children.concat( + finalPath ? + [] : + this.constructDoubleHeirachy( + [ this.getNextLevelHeirachy(curr) ] + ) + ) + }) + } + + private checkEntryExist(acc:NestedChildren[],curr:HasPathProperty):boolean{ + const path = this.getCurrentPath(curr) + return acc.findIndex(it=>it.path === path) >= 0 + } + + private getNextLevelHeirachy(file:HasPathProperty):HasPathProperty{ + return Object.assign({},file, + { + path:file.path.slice(this.findRealIndex(file.path)+1) + }) + } + + private getNextPath(curr:HasPathProperty):string{ + const realIdx = this.findRealIndex(curr.path) + return realIdx > 0 ? + curr.path.slice(realIdx + 1) : + realIdx == 0 ? + ' ' : + curr.path + } + + private getCurrentPath(curr:HasPathProperty):string{ + const realIdx = this.findRealIndex(curr.path) + return realIdx > 0 ? + curr.path.slice(0,realIdx) : + realIdx == 0 ? + ' ' : + curr.path + } + + private findRealIndex(path:string):number{ + + let idx = path.indexOf('/') + while(path[idx-1] === '\\' && idx >= 0){ + idx = path.indexOf('/',idx + 1) + } + return idx + } + +} + +export interface HasPathProperty{ + path : string +} + +export interface NestedChildren{ + path : string + children : NestedChildren[] +} \ No newline at end of file