From d9009cef0e11775b8a7a16ac2c9ca62940bbdb33 Mon Sep 17 00:00:00 2001 From: Xiao Gui <xgui3783@gmail.com> Date: Fri, 6 Aug 2021 11:10:20 +0200 Subject: [PATCH] refactor: remove unneeded backend code chore: fix lint --- deploy/app.js | 16 +- deploy/app.spec.js | 8 - deploy/atlas/index.js | 142 - deploy/atlas/index.spec.js | 69 - deploy/atlas/query.js | 51 - deploy/atlas/sanity.spec.js | 105 - deploy/datasets/importIBS.js | 75 - deploy/datasets/importIBS.spec.js | 32 - deploy/datasets/index.js | 265 - deploy/datasets/kgtos.md | 16 - deploy/datasets/query.js | 301 - deploy/datasets/query.spec.js | 0 deploy/datasets/spatialQuery.js | 116 - deploy/datasets/spatialRouter.js | 49 - deploy/datasets/spatialXform/waxholmRat.js | 33 - deploy/datasets/supplements/.gitignore | 1 - deploy/datasets/supplements/commonSense.js | 70 - .../datasets/supplements/commonSense.spec.js | 66 - deploy/datasets/supplements/data/allen.json | 453 -- .../supplements/data/ibc/left_AIPS_IP1.md | 22 - 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| 22 - .../supplements/data/ibc/left_Premotor_6d2.md | 22 - .../supplements/data/ibc/left_Premotor_6d3.md | 22 - .../supplements/data/ibc/left_SPL_5Ci.md | 22 - .../supplements/data/ibc/left_SPL_5L.md | 22 - .../supplements/data/ibc/left_SPL_5M.md | 22 - .../supplements/data/ibc/left_SPL_7A.md | 22 - .../supplements/data/ibc/left_SPL_7M.md | 22 - .../supplements/data/ibc/left_SPL_7P.md | 22 - .../supplements/data/ibc/left_SPL_7PC.md | 22 - .../ibc/left_Supplementarymotor_presma.md | 22 - .../data/ibc/left_Supplementarymotor_sma.md | 22 - .../supplements/data/ibc/left_Visual_FG1.md | 22 - .../supplements/data/ibc/left_Visual_FG2.md | 22 - .../supplements/data/ibc/left_Visual_FG3.md | 22 - .../supplements/data/ibc/left_Visual_FG4.md | 22 - .../supplements/data/ibc/left_Visual_hOc1.md | 22 - .../supplements/data/ibc/left_Visual_hOc2.md | 22 - .../supplements/data/ibc/left_Visual_hOc3d.md | 22 - .../supplements/data/ibc/left_Visual_hOc3v.md | 22 - 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deploy/datasets/supplements/previewFile.js | 72 - deploy/datasets/testData/allen2015.js | 193 - deploy/datasets/testData/bigbrain.js | 141 - deploy/datasets/testData/colin27.js | 113 - deploy/datasets/testData/hoc1pmap.js | 146 - deploy/datasets/testData/humanReceptor.js | 115 - deploy/datasets/testData/ibcData.md | 24 - deploy/datasets/testData/ibcDataExpected.js | 58 - deploy/datasets/testData/mni152JuBrain.js | 337 - deploy/datasets/testData/waxholmv2.js | 114 - deploy/datasets/util.js | 417 -- deploy/datasets/util.spec.js | 369 -- deploy/nehubaConfig/index.js | 19 - deploy/nehubaConfig/query.js | 43 - deploy/templates/index.js | 51 - deploy/templates/query.js | 50 - src/glue.ts | 3 - 219 files changed, 8 insertions(+), 14982 deletions(-) delete mode 100644 deploy/atlas/index.js delete mode 100644 deploy/atlas/index.spec.js delete mode 100644 deploy/atlas/query.js delete mode 100644 deploy/atlas/sanity.spec.js delete mode 100644 deploy/datasets/importIBS.js delete mode 100644 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require('./bkwdCompat')() const { router: regionalFeaturesRouter, regionalFeatureIsReady } = require('./regionalFeatures') -const { router: datasetRouter } = require('./datasets') const LOCAL_CDN_FLAG = !!process.env.PRECOMPUTED_SERVER @@ -234,9 +233,6 @@ const jsonMiddleware = (req, res, next) => { /** * resources endpoints */ -const atlasesRouter = require('./atlas') -const templateRouter = require('./templates') -const nehubaConfigRouter = require('./nehubaConfig') const pluginRouter = require('./plugins') const previewRouter = require('./preview') @@ -245,10 +241,14 @@ const setResLocalMiddleWare = routePathname => (req, res, next) => { next() } -app.use('/atlases', setResLocalMiddleWare('atlases'), atlasesRouter) -app.use('/templates', setResLocalMiddleWare('templates'), jsonMiddleware, templateRouter) -app.use('/nehubaConfig', jsonMiddleware, nehubaConfigRouter) -app.use('/datasets', jsonMiddleware, datasetRouter) +const deprecated = (req, res) => { + res.status(404).send(`Route has been removed.`) +} + +app.use('/atlases', deprecated) +app.use('/templates', deprecated) +app.use('/nehubaConfig', deprecated) +app.use('/datasets', deprecated) app.use('/regionalFeatures', jsonMiddleware, regionalFeaturesRouter) app.use('/plugins', jsonMiddleware, pluginRouter) app.use('/preview', jsonMiddleware, previewRouter) diff --git a/deploy/app.spec.js b/deploy/app.spec.js index 5427e5d80..cf0cfd703 100644 --- a/deploy/app.spec.js +++ b/deploy/app.spec.js @@ -25,13 +25,6 @@ describe('authentication', () => { const authConfigureAuthStub = sinon.stub(auth, 'configureAuth') const authIsReadyStub = sinon.stub(auth, 'ready') - require.cache[require.resolve('./datasets')] = { - exports: { - router: (req, res, next) => next(), - ready: async () => true - } - } - require.cache[require.resolve('./saneUrl')] = { exports: { router: (req, res, next) => next(), @@ -61,7 +54,6 @@ describe('authentication', () => { }) after(() => { - delete require.cache[require.resolve('./datasets')] delete require.cache[require.resolve('./saneUrl')] delete require.cache[require.resolve('./user')] delete require.cache[require.resolve('./constants')] diff --git a/deploy/atlas/index.js b/deploy/atlas/index.js deleted file mode 100644 index 9bf745f2e..000000000 --- a/deploy/atlas/index.js +++ /dev/null @@ -1,142 +0,0 @@ -const router = require('express').Router() -const url = require('url') -const fs = require('fs') -const path = require('path') -const { detEncoding } = require('nomiseco') -const { getAllAtlases, getAtlasById, isReady } = require('./query') -const HOSTNAME = process.env.HOSTNAME || 'http://localhost:3000' -const HOST_PATHNAME = process.env.HOST_PATHNAME || '' -const { getTemplate } = require('../templates/query') -const { getHandleErrorFn } = require('../util/streamHandleError') - -const getPreviewFn = ({ res, lastpart }) => HOSTNAME.replace(/\/$/, '') + - HOST_PATHNAME.replace(/\/$/, '') + '/' + - (res.locals.routePathname - ? url.resolve(`${res.locals.routePathname}/`, lastpart) - : lastpart) - -router.get('/', async (req, res) => { - const allAtlases = await getAllAtlases() - const resolvedAtlases = allAtlases.map(v => { - return { - '@id': v, - url: getPreviewFn({ res, lastpart: encodeURIComponent(v) }) - } - }) - res.status(200).json(resolvedAtlases) -}) - -router.get('/ready', (req, res) => { - if (isReady()) { - return res.status(200).end() - } else { - return res.status(503).end() - } -}) - -const previewImageFIleNameMap = new Map([ - ['minds/core/referencespace/v1.0.0/a1655b99-82f1-420f-a3c2-fe80fd4c8588', 'bugbrain.png'], - ['minds/core/referencespace/v1.0.0/dafcffc5-4826-4bf1-8ff6-46b8a31ff8e2', 'icbm2009c.png'], - ['minds/core/referencespace/v1.0.0/7f39f7be-445b-47c0-9791-e971c0b6d992', 'colin27.png'], - ['minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579', 'cytoarchitectonic-maps.png'], - ['juelich/iav/atlas/v1.0.0/3', 'cortical-layers.png'], - ['juelich/iav/atlas/v1.0.0/4', 'grey-white-matter.png'], - ['juelich/iav/atlas/v1.0.0/5', 'firbe-long.png'], - ['juelich/iav/atlas/v1.0.0/6', 'firbe-short.png'], - ['minds/core/parcellationatlas/v1.0.0/d80fbab2-ce7f-4901-a3a2-3c8ef8a3b721', 'difumo-64.png'], - ['minds/core/parcellationatlas/v1.0.0/73f41e04-b7ee-4301-a828-4b298ad05ab8', 'difumo-128.png'], - ['minds/core/parcellationatlas/v1.0.0/141d510f-0342-4f94-ace7-c97d5f160235', 'difumo-256.png'], - ['minds/core/parcellationatlas/v1.0.0/63b5794f-79a4-4464-8dc1-b32e170f3d16', 'difumo-512.png'], - ['minds/core/parcellationatlas/v1.0.0/12fca5c5-b02c-46ce-ab9f-f12babf4c7e1', 'difumo-1024.png'], - ['minds/core/referencespace/v1.0.0/265d32a0-3d84-40a5-926f-bf89f68212b9', 'allen-mouse.png'], - ['minds/core/parcellationatlas/v1.0.0/05655b58-3b6f-49db-b285-64b5a0276f83', 'allen-mouse-2017.png'], - ['minds/core/parcellationatlas/v1.0.0/39a1384b-8413-4d27-af8d-22432225401f', 'allen-mouse-2015.png'], - ['minds/core/referencespace/v1.0.0/d5717c4a-0fa1-46e6-918c-b8003069ade8', 'waxholm.png'], - ['minds/core/parcellationatlas/v1.0.0/ebb923ba-b4d5-4b82-8088-fa9215c2e1fe', 'waxholm-v3.png'], - ['minds/core/parcellationatlas/v1.0.0/2449a7f0-6dd0-4b5a-8f1e-aec0db03679d', 'waxholm-v2.png'], - ['minds/core/parcellationatlas/v1.0.0/11017b35-7056-4593-baad-3934d211daba', 'waxholm-v1.png'], - ['juelich/iav/atlas/v1.0.0/79cbeaa4ee96d5d3dfe2876e9f74b3dc3d3ffb84304fb9b965b1776563a1069c', 'short-bundle-hcp.png'], - ['julich/tmp/referencespace/freesurfer', 'freesurfer.png'], - ['julich/tmp/parcellation/freesurfer-test-parc', 'freesurfer.png'], -]) - -router.get('/preview', (req, res) => { - const { id } = req.query - const filename = previewImageFIleNameMap.get(id) - if (!filename) return res.status(404).end() - - const filepath = path.join(__dirname, '../assets/images/atlas-selection', filename) - - try { - res.setHeader('Content-Type', 'image/png') - fs.createReadStream(filepath).pipe(res).on('error', getHandleErrorFn(req, res)) - } catch (e) { - res.status(500).send(e) - } -}) - -router.get('/:atlasId', async (req, res) => { - const { atlasId } = req.params - const { templateSpaces, parcellations, ...rest } = await getAtlasById(atlasId) - - const searchParam = new url.URLSearchParams() - searchParam.set('id', atlasId) - const lastPathPreview = `preview?${searchParam.toString()}` - - return res.status(200).json({ - ...rest, - previewUrl: getPreviewFn({ res, lastpart: lastPathPreview }), - parcellations: parcellations.map(p => { - const spSearchParam = new url.URLSearchParams() - spSearchParam.set('id', p['@id']) - const parcellationPreview = `preview?${spSearchParam.toString()}` - return { - previewUrl: getPreviewFn({ res, lastpart: parcellationPreview }), - ...p - } - }), - templateSpaces: templateSpaces.map(tmpl => { - const lastTemplatePath = `${encodeURIComponent(atlasId)}/template/${encodeURIComponent(tmpl['@id'])}` - - const searchParam = new url.URLSearchParams() - searchParam.set('id', tmpl['@id']) - const lastPathPreview = `preview?${searchParam.toString()}` - return { - ...tmpl, - previewUrl: getPreviewFn({ res, lastpart: lastPathPreview }) - } - }) - }) -}) - -const templateIdToStringMap = new Map([ - ['minds/core/referencespace/v1.0.0/265d32a0-3d84-40a5-926f-bf89f68212b9', 'allenMouse'], - ['minds/core/referencespace/v1.0.0/d5717c4a-0fa1-46e6-918c-b8003069ade8', 'waxholmRatV2_0'], - ['minds/core/referencespace/v1.0.0/a1655b99-82f1-420f-a3c2-fe80fd4c8588', 'bigbrain'], - ['minds/core/referencespace/v1.0.0/dafcffc5-4826-4bf1-8ff6-46b8a31ff8e2', 'MNI152'], - ['minds/core/referencespace/v1.0.0/7f39f7be-445b-47c0-9791-e971c0b6d992', 'colin'] -]) - -router.get('/:atlasId/template/:templateId', async (req, res) => { - const { atlasId, templateId } = req.params - - const mappedString = templateIdToStringMap.get(templateId) - if (!mappedString) { - return res.status(404).end() - } - - const header = req.get('Accept-Encoding') - const acceptedEncoding = detEncoding(header) - - if (acceptedEncoding) res.set('Content-Encoding', acceptedEncoding) - getTemplate({ template: mappedString, acceptedEncoding, returnAsStream: true }) - .pipe(res) - .on('error', getHandleErrorFn(req, res)) -}) - -router.get('/:atlasId/parcellation/:parcellationId', async (req, res) => { - res.status(501).end() -}) - - -module.exports = router \ No newline at end of file diff --git a/deploy/atlas/index.spec.js b/deploy/atlas/index.spec.js deleted file mode 100644 index 727ae6e55..000000000 --- a/deploy/atlas/index.spec.js +++ /dev/null @@ -1,69 +0,0 @@ -const { expect, assert } = require('chai') -const express = require('express') -const { retry } = require('../../common/util') -const got = require('got') - -let server, atlases, templates = [] -const PORT = 12345 -const baseUrl = `http://localhost:${PORT}` -process.env.HOSTNAME = baseUrl -let routePathname -describe('atlas/index.js', () => { - before(async () => { - const app = express() - - app.use((req, res, next) => { - if (routePathname) { - res.locals.routePathname = routePathname - } - next() - }) - - app.use(require('./index')) - - server = app.listen(PORT) - - await retry(async () => { - console.log('retrying') - await got(`${baseUrl}/ready`) - }, { timeout: 500 }) - }) - - beforeEach(() => { - routePathname = null - }) - - after(() => { - server.close() - }) - it('> GET / works', async () => { - const { body } = await got(`${baseUrl}/`, { responseType: 'json' }) - expect(body.length).to.equal(3) - assert( - body.every(({ url }) => !/undefined/.test(url) ), - 'url pathname should not contain undefined' - ) - atlases = body - }) - - it('> route pathname works', async () => { - routePathname = 'marshmellow' - - const { body } = await got(`${baseUrl}/`, { responseType: 'json' }) - expect(body.length).to.equal(3) - assert( - body.every(({ url }) => /marshmellow/.test(url)), - 'url pathname should be as set' - ) - }) - it('> every end point works', async () => { - for (const { url } of atlases) { - expect(!!url).to.be.true - const { body } = await got( - /^http/.test(url) ? url : `${baseUrl}/${url}`, - {responseType: 'json'} - ) - expect(body.templateSpaces.length).to.be.greaterThan(0) - } - }) -}) \ No newline at end of file diff --git a/deploy/atlas/query.js b/deploy/atlas/query.js deleted file mode 100644 index 2523c1e81..000000000 --- a/deploy/atlas/query.js +++ /dev/null @@ -1,51 +0,0 @@ -const fs = require('fs') -const path = require('path') -const { promisify } = require('util') - -const readdirAsync = promisify(fs.readdir) -const readFileAsync = promisify(fs.readFile) - -let ready = false - -const map = new Map() - -const getData = async () => { - - let filepath - if (process.env.NODE_ENV === 'production') { - filepath = path.join(__dirname, '../res') - } else { - filepath = path.join(__dirname, '../../src/res/ext') - } - - const files = await readdirAsync(path.join(filepath, 'atlas')) - - for (const file of files) { - - try { - - const data = await readFileAsync(path.join(filepath, 'atlas', file), 'utf-8') - const json = JSON.parse(data) - map.set(json['@id'], json) - } catch (e) { - - } - } - ready = true -} - -getData() - -const getAllAtlases = async () => { - return Array.from(map.keys()) -} - -const getAtlasById = async id => { - return map.get(id) -} - -module.exports = { - getAllAtlases, - getAtlasById, - isReady: () => ready -} \ No newline at end of file diff --git a/deploy/atlas/sanity.spec.js b/deploy/atlas/sanity.spec.js deleted file mode 100644 index 009a0b41e..000000000 --- a/deploy/atlas/sanity.spec.js +++ /dev/null @@ -1,105 +0,0 @@ -const fs = require('fs') -const path = require('path') -const { promisify } = require('util') -const asyncReadfile = promisify(fs.readFile) -const { expect, assert } = require('chai') - -const templateFiles = [ - 'bigbrain.json', - 'colin.json', - 'MNI152.json', - 'waxholmRatV2_0.json', - 'allenMouse.json', - 'freesurfer.json', -] - -const atlasFiles = [ - 'atlas_multiLevelHuman.json', - 'atlas_waxholmRat.json', - 'atlas_allenMouse.json', -] - -const templateIdToParcsMap = new Map() -const templateIdToTemplateMap = new Map() -const parcIdToTemplateId = new Map() -const parcIdToParcMap = new Map() - -const rootDir = path.join(__dirname, '../../src/res/ext') - -describe('> atlas sanity check', () => { - before(async () => { - for (const templateFile of templateFiles){ - const txt = await asyncReadfile( - path.join(rootDir, templateFile), - 'utf-8' - ) - const template = JSON.parse(txt) - const { ['@id']: templateId, name: templateName, parcellations } = template - if (!templateId) throw new Error(`${templateFile} / ${templateName} / @id not defined`) - templateIdToTemplateMap.set(templateId, template) - - for (const parc of parcellations) { - const { ['@id']: parcId, name: parcName } = parc - if (!parcId) throw new Error(`${templateFile} / ${parcName} /@id not defined`) - parcIdToParcMap.set(parcId, parc) - - const arr = templateIdToParcsMap.get(templateId) || [] - templateIdToParcsMap.set(templateId, arr.concat(parcId) ) - - const arr2 = parcIdToTemplateId.get(parcId) || [] - parcIdToTemplateId.set(parcId, arr2.concat(templateId)) - } - } - }) - - for (const atlas of atlasFiles) { - describe(`> checking ${atlas}`, () => { - - beforeEach(async () => { - const txt = await asyncReadfile( - path.join(rootDir, 'atlas', atlas) - ) - const { ['@id']: atlasId, name: atlasName, templateSpaces, parcellations } = JSON.parse(txt) - - describe(`> checking ${atlasName}`, () => { - describe('> checking template spaces', () => { - for (const { name: tName, ['@id']: tId, availableIn } of templateSpaces) { - describe(`> checking ${tName} with id ${tId}`, () => { - for (const { ['@id']: pId, name: pName } of availableIn) { - describe(`> checking ${pName}, with id ${pId}`, () => { - it('> template maps to parc', () => { - const arr = templateIdToParcsMap.get(tId) - const idx = arr.findIndex(id => id === pId) - assert( - idx >= 0, - 'entry can be found' - ) - arr.splice(idx, 1) - }) - - it('> parc maps to tmpl', () => { - - const arr = parcIdToTemplateId.get(pId) - if (!arr) throw new Error(`${pName} cannot be found`) - const idx = arr.findIndex(id => id === tId) - assert( - idx >= 0, - 'entry can be found' - ) - arr.splice(idx, 1) - }) - }) - } - }) - } - }) - }) - - }) - - it('> dummy test', () => { - expect(true).to.equal(true) - }) - }) - } -}) diff --git a/deploy/datasets/importIBS.js b/deploy/datasets/importIBS.js deleted file mode 100644 index 803a3ea79..000000000 --- a/deploy/datasets/importIBS.js +++ /dev/null @@ -1,75 +0,0 @@ -const fs = require('fs') -const path = require('path') -const julichBrainNameToNexusId = require('./supplements/data/julich_brain_name_to_nexusid') - - -const IBC_DATA_DIR = path.join(__dirname, './supplements/data/ibc/') -const IBC_SCHEMA = '//ibc/ibc_schema' - -const getIbcDatasetByFileName = (file) => { - const str = fs.readFileSync(path.join(IBC_DATA_DIR, file), "utf8"); - - const name = str.substring(2, str.indexOf('The Individual Brain Charting dataset is')) - const kgUrl = str.substring(str.indexOf('Knowledge Graph: https://'), str.indexOf('Following are the')) - const kgReference = [kgUrl.substring(kgUrl.indexOf('https'), kgUrl.length)] - const description = str.substring(str.indexOf('The Individual Brain Charting')).replace(/:-:/g, '---') - - const region = julichBrainNameToNexusId.find(r => r[0] && name.includes(r[0])) - const regionFullId = (region && region[1] && region[1].kg) ? `https://nexus.humanbrainproject.org/v0/data/${region[1].kg.kgSchema}/${region[1].kg.kgId}` : null - - return { - name, - kgReference, - description, - methods: ['functional magnetic resonance imaging (fMRI)'], - species: ['Homo sapiens'], - fullId: `https://ibc/ibc_schema/${file}`, - kgId: file, - kgSchema: '//ibc/ibc_schema', - referenceSpaces: [ - { - "name": null, - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/referencespace/v1.0.0/dafcffc5-4826-4bf1-8ff6-46b8a31ff8e2" - }, - { - "name": "MNI Colin 27", - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/referencespace/v1.0.0/7f39f7be-445b-47c0-9791-e971c0b6d992" - } - ], - parcellationAtlas: [ - { - name: 'Jülich Cytoarchitechtonic Brain Atlas (human)', - fullId: - 'https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579', - }], - parcellationRegion: [ - { - species: [], - name: region[0], - alias: null, - fullId: regionFullId - } - ], - embargoStatus: [{ - '@id': 'https://nexus.humanbrainproject.org/v0/data/minds/core/embargostatus/v1.0.0/1d726b76-b176-47ed-96f0-b4f2e17d5f19' - }] - } -} - -const ibcData = [] - -const ibcDataFiles = fs.readdirSync(IBC_DATA_DIR) -ibcDataFiles.forEach((file) => { - ibcData.push(getIbcDatasetByFileName(file)) -}) - -const getIBCData = () => { - return ibcData -} - - -module.exports = { - getIBCData, - getIbcDatasetByFileName, - IBC_SCHEMA: IBC_SCHEMA -} diff --git a/deploy/datasets/importIBS.spec.js b/deploy/datasets/importIBS.spec.js deleted file mode 100644 index 01fbb48d8..000000000 --- a/deploy/datasets/importIBS.spec.js +++ /dev/null @@ -1,32 +0,0 @@ -const ibc = require('./importIBS') -const { expect } = require('chai') -const expectedIBCData = require('./testData/ibcDataExpected') - -describe('datasets/data/importIBC.js', () => { - describe('Get Dataset object from markdown', () => { - it('dataset name valid', () => { - const ibcData = ibc.getIbcDatasetByFileName('left_AIPS_IP1.md') - expect(expectedIBCData.name).to.be.equal(ibcData.name) - }) - it('dataset description valid', () => { - const ibcData = ibc.getIbcDatasetByFileName('left_AIPS_IP1.md') - expect(expectedIBCData.description).to.be.equal(ibcData.description) - }) - it('dataset reference valid', () => { - const ibcData = ibc.getIbcDatasetByFileName('left_AIPS_IP1.md') - expect(expectedIBCData.kgReference[0]).to.be.equal(ibcData.kgReference[0]) - }) - it('dataset fullId valid', () => { - const ibcData = ibc.getIbcDatasetByFileName('left_AIPS_IP1.md') - expect(expectedIBCData.fullId).to.be.equal(ibcData.fullId) - }) - it('dataset region valid', () => { - const ibcData = ibc.getIbcDatasetByFileName('left_AIPS_IP1.md') - expect(expectedIBCData.parcellationRegion[0]).to.be.eql(ibcData.parcellationRegion[0]) - }) - it('dataset valid', () => { - const ibcData = ibc.getIbcDatasetByFileName('left_AIPS_IP1.md') - expect(expectedIBCData).to.be.eql(ibcData) - }) - }) -}) diff --git a/deploy/datasets/index.js b/deploy/datasets/index.js deleted file mode 100644 index 4b3780d1a..000000000 --- a/deploy/datasets/index.js +++ /dev/null @@ -1,265 +0,0 @@ -const express = require('express') -const path = require('path') -const fs = require('fs') -const datasetsRouter = express.Router() -const { init, getDatasets, getPreview, getDatasetFromId, getExternalSchemaDatasets, getDatasetFileAsZip, getTos, hasPreview, getDatasetsByRegion } = require('./query') -const { retry } = require('./util') -const url = require('url') -const qs = require('querystring') -const archiver = require('archiver') -const { getHandleErrorFn } = require('../util/streamHandleError') -const { IBC_SCHEMA } = require('./importIBS') - -const { getIdFromFullId } = require('../../common/util') - -datasetsRouter.use(express.urlencoded({ extended: false })) -datasetsRouter.use(express.json()) - -let readyFlag = false - -retry(async () => { - await init() - console.log(`data init success`) - readyFlag = true -}, { timeout: 1000, retries: 5 }) - -const ready = async () => readyFlag - -const cacheMaxAge24Hr = (_req, res, next) => { - const oneDay = 24 * 60 * 60 - res.setHeader('Cache-Control', `max-age=${oneDay}`) - next() -} - -const noCacheMiddleWare = (_req, res, next) => { - res.setHeader('Cache-Control', 'no-cache') - next() -} - -const getVary = (headers) => (_req, res, next) => { - if (!headers instanceof Array) { - console.warn(`getVary arguments needs to be an Array of string`) - return next() - } - res.setHeader('Vary', headers.join(', ')) - next() -} - - -datasetsRouter.get('/tos', cacheMaxAge24Hr, async (req, res) => { - const tos = getTos() - if (tos) { - res.setHeader('Content-Type', 'text/markdown; charset=utf-8') - res.status(200).send(tos) - } else { - res.status(404).end() - } -}) - -datasetsRouter.use('/spatialSearch', noCacheMiddleWare, require('./spatialRouter')) - -datasetsRouter.get('/templateNameParcellationName/:templateName/:parcellationName', noCacheMiddleWare, (req, res, next) => { - const { templateName, parcellationName } = req.params - - const { user } = req - getDatasets({ templateName, parcellationName, user }) - .then(ds => { - res.status(200).json(ds) - }) - .catch(error => { - next({ - code: 500, - error, - trace: 'templateName' - }) - }) -}) - -datasetsRouter.get('/byRegion/:regionId', noCacheMiddleWare, async (req, res) => { - const { query } = req - const refSpcId = query && query.referenceSpaceId - - const { regionId } = req.params - const { user } = req - const ds = await getDatasetsByRegion({ regionId, user }) - const filteredDs = ds.filter(d => { - /** - * filter by reference space - */ - if (!d['referenceSpaces'] || d['referenceSpaces'].length === 0 || !refSpcId) { - return true - } - return d['referenceSpaces'].some(refSpc => getIdFromFullId(refSpc['fullId']) === refSpcId) - }) - res.status(200).json(filteredDs) -}) - -const deprecatedNotice = (_req, res) => { - res.status(400).send(`querying datasets with /templateName or /parcellationName separately have been deprecated. Please use /templateNameParcellationName/:templateName/:parcellationName instead`) -} - -datasetsRouter.get('/templateName/:templateName', deprecatedNotice) - -datasetsRouter.get('/parcellationName/:parcellationName', deprecatedNotice) - -/** - * It appears that query param are not - */ -datasetsRouter.get('/preview/:datasetName', getVary(['referer']), cacheMaxAge24Hr, (req, res, next) => { - const { datasetName } = req.params - const ref = url.parse(req.headers.referer) - const { templateSelected, parcellationSelected } = qs.parse(ref.query) - - getPreview({ datasetName, templateSelected }) - .then(preview => { - if (preview) { - res.status(200).json(preview) - } else { - next({ - code: 404, - trace: 'preview' - }) - } - }) - .catch(error => { - next({ - code: 500, - error, - trace: 'preview' - }) - }) -}) - -const previewFileMap = new Map() - -const PUBLIC_PATH = process.env.NODE_ENV === 'production' - ? path.join(__dirname, '..', 'public') - : path.join(__dirname, '..', '..', 'dist', 'aot') - - -const RECEPTOR_PATH = path.join(PUBLIC_PATH, 'res', 'image') -fs.readdir(RECEPTOR_PATH, (err, files) => { - if (err) { - console.warn('reading receptor error', err) - return - } - files.forEach(file => previewFileMap.set(`res/image/receptor/${file}`, path.join(RECEPTOR_PATH, file))) -}) - - -// TODO deprecated -datasetsRouter.get('/previewFile', cacheMaxAge24Hr, (req, res) => { - const { file } = req.query - const filePath = previewFileMap.get(file) - - // Set content type to give browser a hint for download - const ext = path.extname(filePath).slice(1) - const type = express.static.mime.types[ext] - - if (type) res.setHeader('Content-Type', type) - - // even though req.url is modified, req.query is not - // for now, just serve non encoded image - - res.removeHeader('Content-Encoding') - - if (filePath) { - fs.createReadStream(filePath).pipe(res).on('error', getHandleErrorFn(req, res)) - } else { - res.status(404).send() - } -}) - -const kgExternalDatasetSchemas = [ - IBC_SCHEMA, - // Add more here... -] - -const checkKgQuery = (req, res, next) => { - const { kgSchema } = req.query - if (kgSchema !== 'minds/core/dataset/v1.0.0' && !kgExternalDatasetSchemas.includes(kgSchema)) return res.status(400).send('Only kgSchema is required and the only accepted value is minds/core/dataset/v1.0.0') - else return next() -} - -// TODO deprecated -datasetsRouter.get('/hasPreview', cacheMaxAge24Hr, async (req, res) => { - const { datasetName } = req.query - if (!datasetName || datasetName === '') return res.status(400).send(`datasetName as query param is required.`) - return res.status(200).json({ - preview: hasPreview({ datasetName }) - }) -}) - -datasetsRouter.get('/kgInfo', checkKgQuery, cacheMaxAge24Hr, async (req, res) => { - return res.status(400).send('Deprecated') - const { kgId } = req.query - const { kgSchema } = req.query - const { user } = req - - const tokenInRequest = req.headers['authorization'] && req.headers['authorization'].replace(/bearer\s+/i, '') - const reqUser = tokenInRequest && ({ - tokenset: { - access_token: tokenInRequest - } - }) - try{ - if (kgSchema === 'minds/core/dataset/v1.0.0') { - const stream = await getDatasetFromId({user: reqUser || user, kgId, returnAsStream: true}) - stream.on('error', getHandleErrorFn(req, res)).pipe(res) - } else { - const data = getExternalSchemaDatasets(kgId, kgSchema) - res.status(200).send(data) - } - }catch(e){ - getHandleErrorFn(req, res)(e) - } -}) - -datasetsRouter.get('/downloadKgFiles', checkKgQuery, async (req, res) => { - const { kgId } = req.query - const { user } = req - try { - const stream = await getDatasetFileAsZip({ user, kgId }) - res.setHeader('Content-Type', 'application/zip') - res.setHeader('Content-Disposition', `attachment; filename="${kgId}.zip"`) - stream.pipe(res).on('error', getHandleErrorFn(req, res)) - } catch (e) { - console.warn('datasets/index#downloadKgFiles', e) - res.status(400).send(e.toString()) - } -}) - -datasetsRouter.post('/bulkDownloadKgFiles', express.urlencoded({ extended: false }), async (req, res) => { - try{ - const { body = {}, user } = req - const { kgIds } = body - if (!kgIds) throw new Error(`kgIds needs to be populated`) - const arrKgIds = JSON.parse(kgIds) - if (!Array.isArray(arrKgIds)) { - throw new Error(`kgIds needs to be an array`) - } - if (arrKgIds.length === 0) { - throw new Error(`There needs to be at least 1 kgId in kgIds`) - } - const zip = archiver('zip') - for (const kgId of arrKgIds) { - zip.append( - await getDatasetFileAsZip({ user, kgId }), - { - name: `${kgId}.zip` - } - ) - } - zip.finalize() - res.setHeader('Content-disposition', `attachment; filename="bulkDsDownload.zip"`) - res.setHeader('Content-Type', 'application/zip') - zip.pipe(res) - }catch(e){ - res.status(400).send(e.toString()) - } -}) - -module.exports = { - router: datasetsRouter, - ready -} diff --git a/deploy/datasets/kgtos.md b/deploy/datasets/kgtos.md deleted file mode 100644 index 44bc5966c..000000000 --- a/deploy/datasets/kgtos.md +++ /dev/null @@ -1,16 +0,0 @@ -The interactive viewer queries HBP Knowledge Graph Data Platform ("KG") for published datasets. - - -Access to the data and metadata provided through KG requires that you cite and acknowledge said data and metadata according to the Terms and Conditions of the Platform. - - -Citation requirements are outlined <https://www.humanbrainproject.eu/en/explore-the-brain/search-terms-of-use#citations> . - - -Acknowledgement requirements are outlined <https://www.humanbrainproject.eu/en/explore-the-brain/search-terms-of-use#acknowledgements> - - -These outlines are based on the authoritative Terms and Conditions are found <https://www.humanbrainproject.eu/en/explore-the-brain/search-terms-of-use> - - -If you do not accept the Terms & Conditions you are not permitted to access or use the KG to search for, to submit, to post, or to download any materials found there-in. diff --git a/deploy/datasets/query.js b/deploy/datasets/query.js deleted file mode 100644 index 4911e4f80..000000000 --- a/deploy/datasets/query.js +++ /dev/null @@ -1,301 +0,0 @@ -const fs = require('fs') -const request = require('request') -const URL = require('url') -const path = require('path') -const archiver = require('archiver') -const { getPreviewFile, hasPreview } = require('./supplements/previewFile') -const { constants, init: kgQueryUtilInit, getUserKGRequestParam, filterDatasets, filterDatasetsByRegion } = require('./util') -const ibc = require('./importIBS') -const { returnAdditionalDatasets } = require('../regionalFeatures') -const lruStore = require('../lruStore') - -const IAV_DS_CACHE_KEY = 'IAV_DS_CACHE_KEY' -const IAV_DS_TIMESTAMP_KEY = 'IAV_DS_TIMESTAMP_KEY' -const IAV_DS_REFRESH_TIMESTAMP_KEY = 'IAV_DS_REFRESH_TIMESTAMP_KEY' - -const { KG_ROOT, KG_SEARCH_VOCAB } = constants - -const KG_DATASET_SEARCH_QUERY_NAME = process.env.KG_DATASET_SEARCH_QUERY_NAME || 'interactiveViewerKgQuery-v1_0' -const KG_DATASET_SEARCH_PATH = process.env.KG_DATASET_SEARCH_PATH || '/minds/core/dataset/v1.0.0' - -const kgDatasetSearchFullString = `${KG_DATASET_SEARCH_PATH}/${KG_DATASET_SEARCH_QUERY_NAME}` - -const KG_PARAM = { - size: process.env.KG_SEARCH_SIZE || '1000', - vocab: KG_SEARCH_VOCAB -} - -const KG_QUERY_DATASETS_URL = new URL.URL(`${KG_ROOT}${kgDatasetSearchFullString}/instances`) -for (let key in KG_PARAM) { - KG_QUERY_DATASETS_URL.searchParams.set(key, KG_PARAM[key]) -} - -const getKgQuerySingleDatasetUrl = ({ kgId }) => { - const _newUrl = new URL.URL(KG_QUERY_DATASETS_URL) - _newUrl.pathname = `${_newUrl.pathname}/${kgId}` - return _newUrl -} - -const fetchDatasetFromKg = async ({ user } = {}) => { - - const { releasedOnly, option } = await getUserKGRequestParam({ user }) - return await new Promise((resolve, reject) => { - request( - `${KG_QUERY_DATASETS_URL}${releasedOnly ? '&databaseScope=RELEASED' : ''}`, - { - timeout: 60 * 1000, - ...option - }, - (err, resp, body) => { - if (err) return reject(err) - if (resp.statusCode >= 400) return reject(resp.statusCode) - resolve(body) - }) - }) -} - -const refreshCache = async () => { - await lruStore._initPr - const { store } = lruStore - store.set(IAV_DS_REFRESH_TIMESTAMP_KEY, new Date().toString()) - const text = await fetchDatasetFromKg() - await store.set(IAV_DS_CACHE_KEY, text) - await store.set(IAV_DS_REFRESH_TIMESTAMP_KEY, null) - await store.set(IAV_DS_TIMESTAMP_KEY, new Date().toString()) -} - -const getPublicDs = async () => { - console.log(`fetching public ds ...`) - - await lruStore._initPr - const { store } = lruStore - - let cachedData = await store.get(IAV_DS_CACHE_KEY) - if (!cachedData) { - await refreshCache() - cachedData = await store.get(IAV_DS_CACHE_KEY) - } - - const timestamp = await store.get(IAV_DS_TIMESTAMP_KEY) - const refreshTimestamp = await store.get(IAV_DS_REFRESH_TIMESTAMP_KEY) - - if ( - new Date() - new Date(timestamp) > 1e3 * 60 * 30 - ) { - if ( - !refreshTimestamp || - new Date() - new Date(refreshTimestamp) > 1e3 * 60 * 5 - ) { - refreshCache() - } - } - if (cachedData) { - const { results } = JSON.parse(cachedData) - return Promise.resolve(results) - } - throw new Error(`cacheData not defined!`) -} - -/** - * force get only public ds - * getting individual ds is too slow - */ -const getDs = ({ user }) => (false && user - ? fetchDatasetFromKg({ user }) - .then(text => JSON.parse(text)) - .then(({ results }) => results) - : getPublicDs() - ).then(async datasets => { - - /** - * populate the manually inserted dataset first - * this allows inserted dataset to overwrite the KG dataset (if needed) - */ - return [ - ...(await returnAdditionalDatasets()), - ...datasets, - ] - .reduce((acc, curr) => { - /** - * remove duplicates - */ - const existingEntryIdx = acc.findIndex(v => v['fullId'] === curr['fullId']) - if (existingEntryIdx >= 0) { - const itemToReturn = { - ...acc[existingEntryIdx], - ...curr, - parcellationRegion: [ - ...(curr['parcellationRegion'] || []), - ...(acc[existingEntryIdx]['parcellationRegion'] || []) - ] - } - const returnArr = [...acc] - returnArr.splice(existingEntryIdx, 1, itemToReturn) - return returnArr - } - else return acc.concat(curr) - }, []) - }) - -const getExternalSchemaDatasets = (kgId, kgSchema) => { - if (kgSchema === ibc.IBC_SCHEMA) { - return ibc.getIbcDatasetByFileName(kgId) - } -} - -/** - * on init, populate the cached data - */ -const init = async () => { - await kgQueryUtilInit() - return await getPublicDs() -} - -const dsNamesToExclude = [ - 'DiFuMo atlas', - 'Whole-brain parcellation', - 'Probabilistic cytoarchitectonic map', - 'Automated Anatomical Labeling (AAL1) atlas', - 'Maximum probability map', - 'Interpolated 3D map', - 'Corrected 3-D reconstruction and surface parcellation', - 'Probability map', - 'Probabilistic map', - // 'Reference delineations', - 'Atlas of the short fiber bundles ', - 'Desikan-Killiany Atlas', - 'GapMap', - 'Cytoarchitectonic areas', - 'Co-activation based parcellation', - 'CEREBRUM-7T', - 'Filter Activations of Convolutional Neuronal Networks' -] - -const getDatasetsByRegion = async ({ regionId, user }) => { - /** - * potentially add other sources of datasets - */ - const kgDatasets = await getDs({ user }) - const excludedDatasets = kgDatasets.filter(({ name }) => { - if (!name) return true - return !dsNamesToExclude.some(n => name.indexOf(n) === 0) - }) - return filterDatasetsByRegion([ - ...excludedDatasets, - /** - * other datasets, such ibc - */ - ...ibc.getIBCData(), - ], regionId) -} - -const getDatasets = ({ templateName, parcellationName, user }) => { - // Get Local datasets - const localDatasets = [ - ...ibc.getIBCData(), - // ... Add more dataset sources here - ] - - // Get all datasets and merge local ones - return getDs({ user }) - .then(json => { - json = [...json, ...localDatasets] - return filterDatasets(json, { templateName, parcellationName }) - }) -} - -const getPreview = ({ datasetName, templateSelected }) => getPreviewFile({ datasetName, templateSelected }) - -const getDatasetFromId = async ({ user, kgId, returnAsStream = false }) => { - const { option, releasedOnly } = await getUserKGRequestParam({ user }) - const _url = getKgQuerySingleDatasetUrl({ kgId }) - if (releasedOnly) _url.searchParams.set('databaseScope', 'RELEASED') - if (returnAsStream) return request(_url, option) - else return new Promise((resolve, reject) => { - request(_url, option, (err, resp, body) => { - if (err) return reject(err) - if (resp.statusCode >= 400) return reject(resp.statusCode) - return resolve(JSON.parse(body)) - }) - }) -} - -const renderPublication = ({ name, cite, doi }) => `${name} - ${cite} - DOI: ${doi} -` - -const prepareDatasetMetadata = ({ name, description, kgReference, contributors, publications }) => { - - return `${name} - -${description} - -${publications.map(renderPublication).join('\n')} -` -} - -let kgtos - -fs.readFile(path.join(__dirname, 'kgtos.md') , 'utf-8', (err, data) => { - if (err) console.warn(`reading kgtos Error`, err) - kgtos = data -}) - -const getTos = () => kgtos - -const getLicense = ({ licenseInfo }) => licenseInfo.map(({ name, url }) => `${name} -<${url}> -`).join('\n') - -const getDatasetFileAsZip = async ({ user, kgId } = {}) => { - if (!kgId) { - throw new Error('kgId must be defined') - } - - const dataset = await getDatasetFromId({ user, kgId }) - const { files, name: datasetName } = dataset - const zip = archiver('zip') - - /** - * append citation information - */ - zip.append(prepareDatasetMetadata(dataset), { - name: `README.txt` - }) - - /** - * append kg citation policy - */ - - zip.append(getLicense(dataset), { - name: `LICENSE.md` - }) - - /** - * append all of the files - */ - for (let file of files) { - const { name, absolutePath } = file - zip.append(request(absolutePath), { - name: path.join(datasetName, name) - }) - } - - zip.finalize() - - return zip -} - -module.exports = { - getDatasetFromId, - getDatasetFileAsZip, - init, - getDatasets, - getPreview, - hasPreview, - getTos, - getExternalSchemaDatasets, - getDatasetsByRegion, -} - diff --git a/deploy/datasets/query.spec.js b/deploy/datasets/query.spec.js deleted file mode 100644 index e69de29bb..000000000 diff --git a/deploy/datasets/spatialQuery.js b/deploy/datasets/spatialQuery.js deleted file mode 100644 index 11eec98d3..000000000 --- a/deploy/datasets/spatialQuery.js +++ /dev/null @@ -1,116 +0,0 @@ -const url = require('url') -const request = require('request') -const { getUserKGRequestParam, constants } = require('./util') -const { transformWaxholmV2NmToVoxel, transformWaxholmV2VoxelToNm } = require('./spatialXform/waxholmRat') - -/** - * TODO change to URL constructor to improve readability - */ - -const { KG_ROOT, KG_SEARCH_VOCAB } = constants - -const kgParams = { - vocab: KG_SEARCH_VOCAB -} - -const KG_SPATIAL_DATASET_SEARCH_QUERY_NAME = process.env.KG_SPATIAL_DATASET_SEARCH_QUERY_NAME || 'iav-spatial-query-v2' -const KG_SPATIAL_DATASET_SEARCH_PATH = process.env.KG_SPATIAL_DATASET_SEARCH_PATH || '/neuroglancer/seeg/coordinate/v1.0.0' - -const kgSpatialDatasetSearchFullString = `${KG_SPATIAL_DATASET_SEARCH_PATH}/${KG_SPATIAL_DATASET_SEARCH_QUERY_NAME}` - -const kgQuerySpatialDatasetUrl = new url.URL(`${KG_ROOT}${kgSpatialDatasetSearchFullString}/instances`) - -const defaultXform = (coord) => coord - -const getXformFn = (templateSpace) => { - const _ = {} - switch(templateSpace){ - case 'Waxholm Space rat brain MRI/DTI': - _['nmToVoxel'] = transformWaxholmV2NmToVoxel - _['voxelToNm'] = transformWaxholmV2VoxelToNm - break; - default: { - _['nmToVoxel'] = defaultXform - _['voxelToNm'] = defaultXform - } - } - return _ -} - -const getSpatialSearcParam = ({ templateName, queryArg }) => { - let kgSpaceName - const { nmToVoxel } = getXformFn(templateName) - - const coordsString = queryArg.split('__'); - const boundingBoxCorners = coordsString.map(coordString => coordString.split('_')) - const bbInVoxelSpace = boundingBoxCorners.map(nmToVoxel) - - switch (templateName){ - case 'Waxholm Space rat brain MRI/DTI': - kgSpaceName = 'waxholmV2' - break; - default: - kgSpaceName = templateName - } - return { - boundingBox: `${kgSpaceName}:${bbInVoxelSpace.map(v => v.join(',')).join(',')}` - } -} - - -const fetchSpatialDataFromKg = async ({ templateName, queryGeometry, queryArg, user }) => { - - const { releasedOnly, option } = await getUserKGRequestParam({ user }) - - const _ = getSpatialSearcParam({ templateName, queryGeometry, queryArg }) - const _url = new url.URL(kgQuerySpatialDatasetUrl) - - for (const key in kgParams){ - _url.searchParams.append(key, kgParams[key]) - } - - for (let key in _) { - _url.searchParams.append(key, _[key]) - } - if (releasedOnly) _url.searchParams.append('databaseScope', 'RELEASED') - - return await new Promise((resolve, reject) => { - request(_url, option, (err, resp, body) => { - if (err) return reject(err) - if (resp.statusCode >= 400) { - return reject(resp.statusCode) - } - const json = JSON.parse(body) - - const { voxelToNm } = getXformFn(templateName) - const _ = json.results.map(({ coordinates, ...rest}) => { - return { - ...rest, - geometry: { - type: 'point', - space: 'real', - position: voxelToNm([ - coordinates[0].x, - coordinates[0].y, - coordinates[0].z - ]) - } - } - }) - - return resolve(_) - }) - }) -} - - -const getSpatialDatasets = async ({ templateName, queryGeometry, queryArg, user }) => { - /** - * Local data can be injected here - */ - return await fetchSpatialDataFromKg({ templateName, queryGeometry, queryArg, user }) -} - -module.exports = { - getSpatialDatasets -} \ No newline at end of file diff --git a/deploy/datasets/spatialRouter.js b/deploy/datasets/spatialRouter.js deleted file mode 100644 index 5bfb78a2c..000000000 --- a/deploy/datasets/spatialRouter.js +++ /dev/null @@ -1,49 +0,0 @@ -const router = require('express').Router() -const { getSpatialDatasets } = require('./spatialQuery') - -const badRequestString = `spatialSearch endpoint uses param as follows: - -GET /templateName/<templateName>/<queryGeometry>/<queryArg> - -for example; - -GET /templateName/Colin/bbox/0_0_0__1_1_1` - -router.get('/templateName/:templateName/:queryGeometry/:queryArg', (req, res, next) => { - const { templateName, queryGeometry, queryArg } = req.params - let errorString = `` - if (!templateName) - errorString += `templateName is required\n` - if (!queryGeometry) - errorString += `queryGeometry is required\n` - if (!queryArg) - errorString += `queryArg is required\n` - if (errorString !== ``) - return next({ - code: 400, - error: errorString, - trace: 'dataset#spatialRouter' - }) - - const { user } = req - - getSpatialDatasets({ templateName, queryGeometry, queryArg, user }) - .then(arr => res.status(200).json(arr)) - .catch(error => { - next({ - code: 500, - error, - trace: 'dataset#spatialRouter#getSpatialDatasets' - }) - }) -}) - -router.use((req, res, next) => { - next({ - code: 400, - error: badRequestString, - trace: 'dataset#spatialRouter#notFound' - }) -}) - -module.exports = router \ No newline at end of file diff --git a/deploy/datasets/spatialXform/waxholmRat.js b/deploy/datasets/spatialXform/waxholmRat.js deleted file mode 100644 index 480013b5b..000000000 --- a/deploy/datasets/spatialXform/waxholmRat.js +++ /dev/null @@ -1,33 +0,0 @@ - -/** - * perhaps export the xform fns into a different module - * ideally, in the future, KG can handle xform of voxel to nm - */ -const transformWaxholmV2NmToVoxel = (coord) => { - /** - * as waxholm is already in RAS, does not need to swap axis - */ - - /** - * atlas viewer applies translation (below in nm) in order to center the brain - * query already translates nm to mm, so the unit of transl should be [mm, mm, mm] - */ - const transl = [-9550781, -24355468, -9707031].map(v => v / 1e6) - - /** - * mm/voxel - */ - const voxelDim = [0.0390625, 0.0390625, 0.0390625] - return coord.map((v, idx) => (v - transl[idx]) / voxelDim[idx]) -} - -const transformWaxholmV2VoxelToNm = (coord) => { - const transl = [-9550781, -24355468, -9707031].map(v => v / 1e6) - const voxelDim = [0.0390625, 0.0390625, 0.0390625] - return coord.map((v, idx) => (v * voxelDim[idx]) + transl[idx]) -} - -module.exports = { - transformWaxholmV2NmToVoxel, - transformWaxholmV2VoxelToNm -} \ No newline at end of file diff --git a/deploy/datasets/supplements/.gitignore b/deploy/datasets/supplements/.gitignore deleted file mode 100644 index 16b9d46ca..000000000 --- a/deploy/datasets/supplements/.gitignore +++ /dev/null @@ -1 +0,0 @@ -raw diff --git a/deploy/datasets/supplements/commonSense.js b/deploy/datasets/supplements/commonSense.js deleted file mode 100644 index a7673e935..000000000 --- a/deploy/datasets/supplements/commonSense.js +++ /dev/null @@ -1,70 +0,0 @@ - -const humanTemplateSet = new Set([ - 'Big Brain (Histology)', - 'MNI Colin 27', - 'MNI 152 ICBM 2009c Nonlinear Asymmetric' -]) - -const humanParcellationSet = new Set([ - 'Grey/White matter', - 'Cytoarchitectonic Maps', - 'BigBrain Cortical Layers Segmentation', - 'JuBrain Cytoarchitectonic Atlas', - 'Fibre Bundle Atlas - Short Bundle', - 'Fibre Bundle Atlas - Long Bundle', - 'Cytoarchitectonic Maps' -]) - -const ratTemplateSet = new Set([ - 'Waxholm Space rat brain MRI/DTI' -]) - -const ratParcellationSet = new Set([ - 'Waxholm Space rat brain atlas v1', - 'Waxholm Space rat brain atlas v2', - 'Waxholm Space rat brain atlas v3' -]) - -const mouseTemplateSet = new Set([ - 'Allen adult mouse brain reference atlas V3' -]) - -const mouseParcellationSet = new Set([ - 'Allen Mouse Common Coordinate Framework v3 2017', - 'Allen Mouse Common Coordinate Framework v3 2015' -]) - -const dsIsHuman = ({ ds }) => ds && ds.species.some(species => /homo\ sapiens/i.test(species)) -const dsIsRat = ({ ds }) => ds && ds.species.some(species => /rattus\ norvegicus/i.test(species)) -const dsIsMouse = ({ ds }) => ds && ds.species.some(species => /mus\ musculus/i.test(species)) - -const queryIsMouse = ({ templateName, parcellationName }) => - (templateName && mouseTemplateSet.has(templateName)) - || (parcellationName && mouseParcellationSet.has(parcellationName)) - -const queryIsRat = ({ templateName, parcellationName }) => - (templateName && ratTemplateSet.has(templateName)) - || (parcellationName && ratParcellationSet.has(parcellationName)) - -const queryIsHuman = ({ templateName, parcellationName }) => - (templateName && humanTemplateSet.has(templateName)) - || (parcellationName && humanParcellationSet.has(parcellationName)) - -const getCommonSenseDsFilter = ({ templateName, parcellationName }) => { - const trueFilter = queryIsHuman({ templateName, parcellationName }) - ? dsIsHuman - : queryIsMouse({ templateName, parcellationName }) - ? dsIsMouse - : queryIsRat({ templateName, parcellationName }) - ? dsIsRat - : null - - return ds => trueFilter && trueFilter({ ds }) -} - -module.exports = { - getCommonSenseDsFilter, - dsIsHuman, - dsIsRat, - dsIsMouse -} \ No newline at end of file diff --git a/deploy/datasets/supplements/commonSense.spec.js b/deploy/datasets/supplements/commonSense.spec.js deleted file mode 100644 index 8412f28c8..000000000 --- a/deploy/datasets/supplements/commonSense.spec.js +++ /dev/null @@ -1,66 +0,0 @@ -const { - getCommonSenseDsFilter, - dsIsHuman, - dsIsRat, - dsIsMouse -} = require('./commonSense') - -const { expect } = require('chai') - -const bigbrain = require('../testData/bigbrain') -const waxholmv2 = require('../testData/waxholmv2') -const allen2015 = require('../testData/allen2015') - -describe('commonSense.js', () => { - describe('dsIsRat', () => { - - it('filters bigbrain datasets properly', () => { - for (const ds of bigbrain){ - const isHuman = dsIsRat({ ds }) - expect(isHuman).to.be.false - } - }) - }) - - describe('dsIsMouse', () => { - - it('filters bigbrain datasets properly', () => { - for (const ds of bigbrain){ - const isHuman = dsIsMouse({ ds }) - expect(isHuman).to.be.false - } - }) - }) - - describe('dsIsHuman', () => { - it('filters bigbrain datasets properly', () => { - - for (const ds of bigbrain){ - const isHuman = dsIsHuman({ ds }) - expect(isHuman).to.be.true - } - }) - - it('filters waxholm v2 data properly', () => { - - for (const ds of waxholmv2){ - const isHuman = dsIsHuman({ ds }) - expect(isHuman).to.be.false - } - }) - - it('filters allen data properly', () => { - - for (const ds of allen2015){ - const isHuman = dsIsHuman({ ds }) - expect(isHuman).to.be.false - } - - }) - }) - - describe('getCommonSenseDsFilter', () => { - // TODO - }) - -}) \ No newline at end of file diff --git a/deploy/datasets/supplements/data/allen.json b/deploy/datasets/supplements/data/allen.json deleted file mode 100644 index 58ad54492..000000000 --- a/deploy/datasets/supplements/data/allen.json +++ /dev/null @@ -1,453 +0,0 @@ -[ - { - "Dataset name": "3D imaging of the vascular system of the mouse brain.", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus&p=2#Dataset/632636291a6ff5cb30c55821abaa55c4", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Cerebral cortex", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2F3248-7V", - "PLA": "774", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "3D reconstruction of the vascular system of the mouse brain.", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/a3fd14501d8a5c2ffcaee445ac6f8a5e", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Cerebral cortex", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493/3248-7V", - "PLA": "745", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Action potential dependent sIPSCs - from juvenile (P21-30) C57Bl6/J male mice", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/679c1e4beb7b5f8d7097f1835480a76f", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Field CA1", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2FH57G-ZK5", - "PLA": "15", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Arc expression in resting state", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus&p=2#Dataset/6a5980f16d1b3fd1422db723f9e2c6dc", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 4", - "Semantic link(s)": "Cerebrum", - "Coordinate-based": "Landmark-Reg", - "DOI": "https://doi.org/10.25493%2FMDRW-SWQ", - "PLA": "19", - "EMBARGO": "NO", - "Comments:": "right hemisphere" - }, - { - "Dataset name": "Brain-wide distribution of glutamate type 1 transporter protein (GLT1)", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/63bbb845ac6d2f1839f919c2ef0455bc", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Cerebrum", - "Coordinate-based": "QuickNII", - "DOI": "https://doi.org/10.25493%2FY147-2CE", - "PLA": "167", - "EMBARGO": "NO", - "Comments:": "also in WHS v2" - }, - { - "Dataset name": "Brainwide distribution and variance of amyloid-beta deposits in tg-ArcSwe mice", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/7e972a9c1c1fc2bb493d09512f6550d5", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Cerebrum", - "Coordinate-based": "QuickNII", - "DOI": "https://doi.org/10.25493%2FG6CQ-D4D", - "PLA": "138", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Ca2+/calmodulin-dependent protein kinase II tetracycline-transactivator expression: coronal sections (case 317.8)", - "Dataset URL": "https://www.humanbrainproject.eu/en/explore-the-brain/search/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/e15e4048955ed04112d2652d5a8ce587", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Cerebrum", - "Coordinate-based": "QuickNII", - "DOI": "https://doi.org/10.25493%2FW97C-01R", - "PLA": "case 317.8", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Cell density and distribution in the somatosensory cortex of the mouse brain", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/4e3d82a38ec816d970dff814c9fd2689", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Primary somatosensory area, lower limb; Primary motor area", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2F4HFC-6ZX", - "PLA": "", - "EMBARGO": "YES", - "Comments:": "" - }, - { - "Dataset name": "Comparative overview of brain-wide tetracycline-transactivator expression", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus&p=2#Dataset/48cffa543d49f446f0187902734dd631", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 4", - "Semantic link(s)": "Cerebrum", - "Coordinate-based": "QuickNII", - "DOI": "https://doi.org/10.25493%2FARKS-R7H", - "PLA": "N/A", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Cortical recordings of the Fmr1KO mouse model of Fragile X syndrome during slow wave activity", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/9f11bd320876be5d037164ce696a384f", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Prelimbic area; Primary motor area; Primary somatosensory area; Anteromedial visual area", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2F5VDM-SHH", - "PLA": "", - "EMBARGO": "YES", - "Comments:": "" - }, - { - "Dataset name": "Fluorescence cortical recording of mouse activity after stroke", - "Dataset URL": "https://www.humanbrainproject.eu/en/explore-the-brain/search/?facet_type[0]=Dataset#Dataset/4730b8c4ae603587a04b4c4362869f91", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 4", - "Semantic link(s)": "Anterior area; Anterior cingulate area, dorsal part; Anterolateral visual area; Posteromedial visual area; Primary motor area; Primary somatosensory area, barrel field; Primary somatosensory area, lower limb; Primary somatosensory area, nose; Primary somatosensory area, trunk; Primary somatosensory area, unassigned; Primary somatosensory area, upper limb; Primary visual area; Retrosplenial area, dorsal part; Retrosplenial area, lateral agranular part; Retrosplenial area, ventral part; Rostrolateral area; Secondary motor area", - "Coordinate-based": "Point coordinates", - "DOI": "https://doi.org/10.25493%2FZ9J0-ZZQ", - "PLA": "552", - "EMBARGO": "YES", - "Comments:": "" - }, - { - "Dataset name": "Hippocampal image volume derived from Thy1-GFP-M transgenic mouse", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/8fb1a664ca3390bae960cc1aa11f5827", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Hippocampal region", - "Coordinate-based": "Landmark-Reg", - "DOI": "https://doi.org/10.25493%2FPMDH-FW1", - "PLA": "20", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Neuropsin tetracycline-transactivator expression: coronal sections (case 1952)", - "Dataset URL": "https://www.humanbrainproject.eu/en/explore-the-brain/search/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/e0f992755e391b1dbdaf5b9669ffb49a", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Cerebrum", - "Coordinate-based": "QuickNII", - "DOI": "https://doi.org/10.25493%2F5H13-1Q0", - "PLA": "case 1952", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Neuropsin tetracycline-transactivator expression: coronal sections (case 2849)", - "Dataset URL": "https://www.humanbrainproject.eu/en/explore-the-brain/search/?facet_type[0]=Dataset#Dataset/cf9866eac157682b8320037236f54aa4", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 4", - "Semantic link(s)": "Cerebrum", - "Coordinate-based": "QuickNII", - "DOI": "https://doi.org/10.25493%2FWB6K-V72", - "PLA": "case 2849", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Neuropsin tetracycline-transactivator expression: horizontal sections (case 2877)", - "Dataset URL": "https://www.humanbrainproject.eu/en/explore-the-brain/search/?facet_type[0]=Dataset#Dataset/d56b1fe14bb84987a3a2340e21652b2d", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 5", - "Semantic link(s)": "Cerebrum", - "Coordinate-based": "QuickNII", - "DOI": "https://doi.org/10.25493%2FAYBB-BXV", - "PLA": "case 2877", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Parvalbumin interneruron distribution in the mouse brain", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus&p=2#Dataset/f740e7bb4e7a93647e3a9da50d6d965b", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 4", - "Semantic link(s)": "Cerebellum", - "Coordinate-based": "Landmark-Reg", - "DOI": "https://doi.org/10.25493%2FQSJE-H14", - "PLA": "21", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Pituitary homeobox 3 tetracycline-transactivator expression: coronal sections (case 3435)", - "Dataset URL": "https://www.humanbrainproject.eu/en/explore-the-brain/search/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus&p=2#Dataset/a028609d74b7ab5c66aafafff6ee512a", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 4", - "Semantic link(s)": "Cerebrum", - "Coordinate-based": "QuickNII", - "DOI": "https://doi.org/10.25493%2FFMGJ-4N3", - "PLA": "case 3435", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Pituitary homeobox 3 tetracycline-transactivator expression: coronal sections (case 6517)", - "Dataset URL": "https://www.humanbrainproject.eu/en/explore-the-brain/search/?facet_type[0]=Dataset#Dataset/e9b51ea64b41dc297b0914f7207bd4fb", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 5", - "Semantic link(s)": "Cerebrum", - "Coordinate-based": "QuickNII", - "DOI": "https://doi.org/10.25493%2FDTB3-0KP", - "PLA": "case 6517", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Pituitary homeobox 3 tetracycline-transactivator expression: horizontal sections (case 5154)", - "Dataset URL": "https://www.humanbrainproject.eu/en/explore-the-brain/search/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/2fa3662939761472e8488da76fe49085", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Cerebrum", - "Coordinate-based": "QuickNII", - "DOI": "https://doi.org/10.25493%2F2382-AYM", - "PLA": "case 5154", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Pituitary homeobox 3 tetracycline-transactivator expression: horizontal sections (case 6513)", - "Dataset URL": "https://www.humanbrainproject.eu/en/explore-the-brain/search/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/818289386f50cb9a791aae661a4c2f92", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Cerebrum", - "Coordinate-based": "QuickNII", - "DOI": "https://doi.org/10.25493%2F1AH7-T1A", - "PLA": "case 6513", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Prion promoter tetracycline-transactivator expression: coronal sections (case 388.12)", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/0715fc5d4958b0b73891cae874c37b29", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Cerebrum", - "Coordinate-based": "QuickNII", - "DOI": "https://doi.org/10.25493%2FT9P1-WH4", - "PLA": "case 388.12", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Purkinje cell distribution in mouse cerebellum", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus&p=2#Dataset/0d89723452a334fd8e7fbd040ba79376", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 4", - "Semantic link(s)": "Cerebellum", - "Coordinate-based": "Landmark-Reg", - "DOI": "https://doi.org/10.25493%2F76F0-87N", - "PLA": "22", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Purkinje cell protein 2 tetracycline-transactivator expression: coronal sections (case 1261)", - "Dataset URL": "https://www.humanbrainproject.eu/en/explore-the-brain/search/?facet_type[0]=Dataset#Dataset/ca8162a22e5f43fbbe1a1bed22303fdf", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 5", - "Semantic link(s)": "Cerebrum", - "Coordinate-based": "QuickNII", - "DOI": "https://doi.org/10.25493%2FA2EG-VPR", - "PLA": "case 1261", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Purkinje cell protein 2 tetracycline-transactivator expression: coronal sections (case 4340)", - "Dataset URL": "https://www.humanbrainproject.eu/en/explore-the-brain/search/?facet_type[0]=Dataset#Dataset/03fe9f1fcabedf124d9e6a0e457dca26", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 6", - "Semantic link(s)": "Cerebrum", - "Coordinate-based": "QuickNII", - "DOI": "https://doi.org/10.25493%2FYCGE-ADC", - "PLA": "case 4340", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Purkinje cell protein 2 tetracycline-transactivator expression: horizontal sections (case 3292)", - "Dataset URL": "https://www.humanbrainproject.eu/en/explore-the-brain/search/?facet_type[0]=Dataset#Dataset/70bdda26f3c38dda1790d2a24209100e", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 7", - "Semantic link(s)": "Cerebrum", - "Coordinate-based": "QuickNII", - "DOI": "https://doi.org/10.25493%2FD1PR-55A", - "PLA": "case 3292", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Recordings of cerebellar granule cells current-voltage relations", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/40a8ed8caae4989506d69fd290b67a90", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Vermal regions", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2FMDAR-XEB", - "PLA": "810", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Recordings of cerebellar neuronal firing induced by currents steps", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/5e245cf67a42a14a56bc43913f7bf28a", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Vermal regions", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2F4AF6-WSD", - "PLA": "810", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Recordings of excitatory postsynaptic currents from cerebellar neurons", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/a1ba394b5f353a67f9cec3549891d77b", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Vermal regions", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2FF2VK-MB4", - "PLA": "810", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Recordings of excitatory postsynaptic potentials from cerebellar neurons", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/2ea6f32e8dfd644d426b93aac0ae6eec", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Vermal regions", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2FG07Q-K87", - "PLA": "810", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Recordings of passive cellular parameters of cerebellar neurons", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/077778de710a9192795869a8885525ac", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Vermal regions", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2FMVHQ-4YA", - "PLA": "810", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Recordings of spontaneous firing of cerebellar interneurons (Golgi cells)", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/4197a2f5d71432349fb37ff3ad429580", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Vermal regions", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2FJQH3-0A4", - "PLA": "810", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "sIPSCs from juvenile (P21-30) C57B16/J male mice from hippocampal CA1 pyramidal neurons receiving input from PV+ and CCK+ interneurons", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus&p=2#Dataset/fb1dab2cc153f8de099996172ea4d8b8", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 4", - "Semantic link(s)": "Field CA1", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2FPHA7-5KZ", - "PLA": "12", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "sIPSCs from juvenile (P21-30) C57Bl6/J male mice from CA1 pyramidal neurons receiving input from PV+ interneurons", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/7877f8d8dd316f5c89f8438c0a337300", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Field CA1", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2F37YC-C88", - "PLA": "13", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Spike time dependent plasticity (STDP) data from adult C57BL/6 (wild-type) mice, positive pairing", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus&p=2#Dataset/c021f1e3c97bc761711fad76abf7d468", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 4", - "Semantic link(s)": "Hippocampal region", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2FK9VK-PPM", - "PLA": "", - "EMBARGO": "YES", - "Comments:": "" - }, - { - "Dataset name": "Spike time dependent plasticity (STDP) data from adult neuroligin-3 knock-in mice, positive pairing", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/3348338582a8e3e112b4ae66485404b1", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Hippocampal region", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2FJ43Z-KH0", - "PLA": "", - "EMBARGO": "YES", - "Comments:": "" - }, - { - "Dataset name": "Spike time dependent plasticity (STDP) data from neonate C57BL/6 (wild-type) mice, negative pairing", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus&p=2#Dataset/f54488f5b45bd42cb950678572bd3b15", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Hippocampal region", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2FG3W4-X3P", - "PLA": "", - "EMBARGO": "YES", - "Comments:": "" - }, - { - "Dataset name": "Spike time dependent plasticity (STDP) data from neonate C57BL/6 (wild-type) mice, positive pairing", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus&p=2#Dataset/ce6bc6d713c2a26485b0690e1f627972", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 4", - "Semantic link(s)": "Hippocampal region", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2FNKRY-KA7", - "PLA": "", - "EMBARGO": "YES", - "Comments:": "" - }, - { - "Dataset name": "Spike time dependent plasticity (STDP) data from neonate neuroligin-3 knock-in mice, positive pairing", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/1a6cbd0b55a13e7b8775d3417281a83f", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Hippocampal region", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2FPF1P-YSE", - "PLA": "", - "EMBARGO": "YES", - "Comments:": "" - }, - { - "Dataset name": "Spike time dependent plasticity (STDP) data from neonate neuroligin-3 knock-out mice, positive pairing", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/9c81f671e115a4057bc89be975076254", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Hippocampal region", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2FBT52-9CT", - "PLA": "", - "EMBARGO": "YES", - "Comments:": "" - }, - { - "Dataset name": "Spontaneous inhibitory post-synaptic currents recorded from CA1 pyramidal neurons of adult wild type B6/SJL mice", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus&p=2#Dataset/b8007a80fc0dccd56797473b45429787", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 4", - "Semantic link(s)": "Field CA1", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2F85F8-M92", - "PLA": "14", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Spontaneous inhibitory post-synaptic currents recorded from CA1 pyramidal neurons of adult wild type Tg2576 mice", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/57f6354117bbee6d961f8e36d6360c77", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Field CA1", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2FCTAV-Q45", - "PLA": "11", - "EMBARGO": "NO", - "Comments:": "" - } -] \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_AIPS_IP1.md b/deploy/datasets/supplements/data/ibc/left_AIPS_IP1.md deleted file mode 100644 index 37d1982c4..000000000 --- a/deploy/datasets/supplements/data/ibc/left_AIPS_IP1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hIP1 (IPS) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hIP1 (IPS) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-05 | ses-04 | task-archi_emotional_dir-ap_face_trusty| -| sub-05 | ses-04 | dir-ap_face_trusty| -| sub-07 | ses-11 | sn_before-after_event| -| sub-07 | ses-04 | dir-ap_reading-checkerboard| -| sub-07 | ses-04 | task-archi_standard_dir-ap_reading-checkerboard| -| sub-06 | ses-01 | task-hcp_gambling_dir-ap_punishment-reward| -| sub-06 | ses-01 | dir-ap_punishment-reward| -| sub-07 | ses-12 | task-mtt_we_dir-ap_run-03_we_before-after_event| -| sub-07 | ses-12 | dir-ap_run-03_we_before-after_event| -| sub-07 | ses-12 | we_before-after_event| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_AIPS_IP2.md b/deploy/datasets/supplements/data/ibc/left_AIPS_IP2.md deleted file mode 100644 index 45fe539ae..000000000 --- a/deploy/datasets/supplements/data/ibc/left_AIPS_IP2.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hIP2 (IPS) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hIP2 (IPS) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-06 | ses-01 | task-hcp_gambling_dir-ap_punishment-reward| -| sub-06 | ses-01 | dir-ap_punishment-reward| -| sub-07 | ses-04 | grasp-orientation| -| sub-07 | ses-04 | dir-ffx_grasp-orientation| -| sub-07 | ses-04 | task-archi_spatial_ffx_grasp-orientation| -| sub-15 | ses-01 | dir-ap_object_grasp| -| sub-15 | ses-01 | task-archi_spatial_dir-ap_object_grasp| -| sub-15 | ses-01 | task-archi_spatial_dir-ap_object_orientation| -| sub-15 | ses-01 | dir-ap_object_orientation| -| sub-13 | ses-04 | task-archi_standard_dir-pa_computation-sentences| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_AIPS_IP3.md b/deploy/datasets/supplements/data/ibc/left_AIPS_IP3.md deleted file mode 100644 index f1748f7f2..000000000 --- a/deploy/datasets/supplements/data/ibc/left_AIPS_IP3.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hIP3 (IPS) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hIP3 (IPS) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-01 | ses-07 | dir-pa_rotation_hand| -| sub-01 | ses-07 | task-archi_spatial_dir-pa_rotation_hand| -| sub-01 | ses-07 | task-archi_standard_ffx_video_computation| -| sub-01 | ses-07 | dir-ffx_video_computation| -| sub-01 | ses-07 | video_computation| -| sub-12 | ses-16 | dir-ffx_painting_linear| -| sub-12 | ses-16 | task-preference_paintings_ffx_painting_linear| -| sub-12 | ses-16 | painting_linear| -| sub-01 | ses-07 | task-archi_standard_dir-ap_video_computation| -| sub-01 | ses-07 | dir-ap_video_computation| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Amygdala_CM.md b/deploy/datasets/supplements/data/ibc/left_Amygdala_CM.md deleted file mode 100644 index 27c74c13b..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Amygdala_CM.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in CM (Amygdala) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in CM (Amygdala) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-05 | ses-04 | task-archi_social_dir-ap_triangle_mental| -| sub-05 | ses-04 | dir-ap_triangle_mental| -| sub-06 | ses-04 | task-archi_social_dir-ap_false_belief-mechanistic_video| -| sub-06 | ses-04 | dir-ap_false_belief-mechanistic_video| -| sub-15 | ses-14 | task-mtt_we_dir-pa_run-01_eastside-westside_event| -| sub-15 | ses-14 | dir-pa_run-01_eastside-westside_event| -| sub-07 | ses-03 | dir-pa_run-00_jabberwocky-pseudo| -| sub-07 | ses-03 | task-rsvp_language_dir-pa_run-00_jabberwocky-pseudo| -| sub-08 | ses-04 | dir-ap_run-05_probe| -| sub-08 | ses-04 | task-rsvp_language_dir-ap_run-05_probe| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Amygdala_IF.md b/deploy/datasets/supplements/data/ibc/left_Amygdala_IF.md deleted file mode 100644 index 250bd1c7a..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Amygdala_IF.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in IF (Amygdala) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in IF (Amygdala) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-15 | ses-14 | task-mtt_we_dir-pa_run-01_eastside-westside_event| -| sub-15 | ses-14 | dir-pa_run-01_eastside-westside_event| -| sub-06 | ses-11 | dir-pa_run-02_we_before-after_event| -| sub-06 | ses-11 | task-mtt_we_dir-pa_run-02_we_before-after_event| -| sub-06 | ses-04 | task-archi_standard_dir-ap_horizontal-vertical| -| sub-06 | ses-04 | dir-ap_horizontal-vertical| -| sub-07 | ses-03 | dir-pa_run-00_jabberwocky-pseudo| -| sub-07 | ses-03 | task-rsvp_language_dir-pa_run-00_jabberwocky-pseudo| -| sub-08 | ses-11 | task-mtt_we_dir-pa_run-02_we_all_time-space_cue| -| sub-08 | ses-11 | dir-pa_run-02_we_all_time-space_cue| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Amygdala_LB.md b/deploy/datasets/supplements/data/ibc/left_Amygdala_LB.md deleted file mode 100644 index 380bca167..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Amygdala_LB.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in LB (Amygdala) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in LB (Amygdala) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-08 | ses-11 | task-mtt_we_dir-pa_run-02_we_all_time-space_cue| -| sub-08 | ses-11 | dir-pa_run-02_we_all_time-space_cue| -| sub-06 | ses-04 | task-archi_standard_dir-ap_horizontal-vertical| -| sub-06 | ses-04 | dir-ap_horizontal-vertical| -| sub-09 | ses-05 | task-archi_standard_dir-pa_left-right_button_press| -| sub-09 | ses-05 | dir-pa_left-right_button_press| -| sub-12 | ses-16 | task-preference_paintings_dir-pa_painting_linear| -| sub-12 | ses-16 | dir-pa_painting_linear| -| sub-06 | ses-11 | dir-pa_run-02_we_before-after_event| -| sub-06 | ses-11 | task-mtt_we_dir-pa_run-02_we_before-after_event| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Amygdala_MF.md b/deploy/datasets/supplements/data/ibc/left_Amygdala_MF.md deleted file mode 100644 index 0accbb06c..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Amygdala_MF.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in MF (Amygdala) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in MF (Amygdala) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-03 | dir-pa_run-00_jabberwocky-pseudo| -| sub-07 | ses-03 | task-rsvp_language_dir-pa_run-00_jabberwocky-pseudo| -| sub-06 | ses-04 | task-archi_social_dir-ap_false_belief-mechanistic_video| -| sub-06 | ses-04 | dir-ap_false_belief-mechanistic_video| -| sub-05 | ses-04 | task-archi_social_dir-ap_triangle_mental| -| sub-05 | ses-04 | dir-ap_triangle_mental| -| sub-05 | ses-04 | task-archi_emotional_dir-ap_expression_intention-gender| -| sub-05 | ses-04 | dir-ap_expression_intention-gender| -| sub-05 | ses-00 | task-archi_standard_dir-pa_left-right_button_press| -| sub-05 | ses-00 | dir-pa_left-right_button_press| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Amygdala_SF.md b/deploy/datasets/supplements/data/ibc/left_Amygdala_SF.md deleted file mode 100644 index d2162a901..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Amygdala_SF.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in SF (Amygdala) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in SF (Amygdala) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-11 | dir-pa_run-01_northside-southside_event| -| sub-07 | ses-11 | task-mtt_sn_dir-pa_run-01_northside-southside_event| -| sub-07 | ses-11 | dir-ap_run-03_southside-northside_event| -| sub-07 | ses-11 | task-mtt_sn_dir-ap_run-03_southside-northside_event| -| sub-05 | ses-20 | task-self_dir-pa_run-01_encode_self-other| -| sub-05 | ses-20 | dir-pa_run-01_encode_self-other| -| sub-12 | ses-16 | task-preference_paintings_dir-pa_painting_linear| -| sub-12 | ses-16 | dir-pa_painting_linear| -| sub-12 | ses-03 | dir-ap_triangle_mental-random| -| sub-12 | ses-03 | task-archi_social_dir-ap_triangle_mental-random| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Amygdala_VTM.md b/deploy/datasets/supplements/data/ibc/left_Amygdala_VTM.md deleted file mode 100644 index 36d05f9f7..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Amygdala_VTM.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in VTM (Amygdala) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in VTM (Amygdala) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-06 | ses-11 | dir-pa_run-02_we_before-after_event| -| sub-06 | ses-11 | task-mtt_we_dir-pa_run-02_we_before-after_event| -| sub-08 | ses-04 | dir-ap_run-05_probe| -| sub-08 | ses-04 | task-rsvp_language_dir-ap_run-05_probe| -| sub-07 | ses-11 | task-mtt_sn_dir-ap_run-03_sn_all_space-time_cue| -| sub-07 | ses-11 | dir-ap_run-03_sn_all_space-time_cue| -| sub-05 | ses-04 | task-archi_emotional_dir-ap_expression_intention-gender| -| sub-05 | ses-04 | dir-ap_expression_intention-gender| -| sub-01 | ses-04 | 2back_body| -| sub-12 | ses-00 | task-archi_standard_dir-ap_computation| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Auditory_Te10.md b/deploy/datasets/supplements/data/ibc/left_Auditory_Te10.md deleted file mode 100644 index de332fa23..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Auditory_Te10.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area TE 1.0 (HESCHL) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area TE 1.0 (HESCHL) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-02 | ses-01 | dir-ffx_mechanistic_audio| -| sub-02 | ses-01 | task-archi_social_ffx_mechanistic_audio| -| sub-02 | ses-01 | mechanistic_audio| -| sub-09 | ses-02 | 0back-2back| -| sub-02 | ses-01 | task-archi_social_dir-pa_mechanistic_audio| -| sub-09 | ses-02 | task-hcp_wm_ffx_0back-2back| -| sub-09 | ses-02 | dir-ffx_0back-2back| -| sub-02 | ses-01 | dir-pa_mechanistic_audio| -| sub-02 | ses-01 | dir-ap_false_belief_audio| -| sub-02 | ses-01 | task-archi_social_dir-ap_false_belief_audio| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Auditory_Te11.md b/deploy/datasets/supplements/data/ibc/left_Auditory_Te11.md deleted file mode 100644 index dafe09f4e..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Auditory_Te11.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area TE 1.1 (HESCHL) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area TE 1.1 (HESCHL) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-09 | ses-17 | task-pain_movie_dir-ap_movie_pain| -| sub-09 | ses-17 | dir-ap_movie_pain| -| sub-02 | ses-01 | listening-reading| -| sub-02 | ses-00 | task-archi_social_dir-ap_non_speech_sound| -| sub-02 | ses-00 | dir-ap_false_belief_audio| -| sub-02 | ses-01 | task-archi_standard_ffx_listening-reading| -| sub-02 | ses-01 | non_speech_sound| -| sub-02 | ses-01 | dir-ffx_non_speech_sound| -| sub-02 | ses-00 | dir-ap_non_speech_sound| -| sub-02 | ses-01 | task-archi_social_ffx_non_speech_sound| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Auditory_Te12.md b/deploy/datasets/supplements/data/ibc/left_Auditory_Te12.md deleted file mode 100644 index da96b3812..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Auditory_Te12.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area TE 1.2 (HESCHL) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area TE 1.2 (HESCHL) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-08 | ses-00 | dir-pa_audio_right_button_press| -| sub-08 | ses-00 | task-archi_standard_dir-pa_audio_right_button_press| -| sub-02 | ses-00 | dir-pa_speech-non_speech| -| sub-02 | ses-00 | task-archi_social_dir-pa_speech-non_speech| -| sub-02 | ses-01 | speech-non_speech| -| sub-02 | ses-01 | task-archi_social_ffx_speech-non_speech| -| sub-02 | ses-01 | dir-ffx_speech-non_speech| -| sub-02 | ses-01 | dir-pa_speech-non_speech| -| sub-02 | ses-01 | task-archi_social_dir-pa_speech-non_speech| -| sub-05 | ses-00 | dir-ap_audio_left_button_press| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Bforebrain_123.md b/deploy/datasets/supplements/data/ibc/left_Bforebrain_123.md deleted file mode 100644 index c97af1bf9..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Bforebrain_123.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Ch 123 (Basal Forebrain) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Ch 123 (Basal Forebrain) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-06 | ses-12 | task-mtt_sn_dir-pa_run-01_sn_time-space_event| -| sub-06 | ses-12 | dir-pa_run-01_sn_time-space_event| -| sub-09 | ses-04 | dir-pa_run-00_word-pseudo| -| sub-09 | ses-04 | task-rsvp_language_dir-pa_run-00_word-pseudo| -| sub-06 | ses-12 | dir-pa_run-02_sn_after-before_event| -| sub-06 | ses-12 | task-mtt_sn_dir-pa_run-02_sn_after-before_event| -| sub-04 | ses-16 | task-theory_of_mind_dir-ap_belief| -| sub-04 | ses-16 | dir-ap_belief| -| sub-01 | ses-04 | 2back_body| -| sub-12 | ses-00 | task-archi_standard_dir-ap_computation| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Bforebrain_4.md b/deploy/datasets/supplements/data/ibc/left_Bforebrain_4.md deleted file mode 100644 index 5da1ca066..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Bforebrain_4.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Ch 4 (Basal Forebrain) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Ch 4 (Basal Forebrain) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-05 | ses-04 | task-archi_social_dir-ap_triangle_mental| -| sub-05 | ses-04 | dir-ap_triangle_mental| -| sub-06 | ses-04 | task-archi_social_dir-ap_false_belief-mechanistic_video| -| sub-06 | ses-04 | dir-ap_false_belief-mechanistic_video| -| sub-07 | ses-03 | dir-pa_run-00_jabberwocky-pseudo| -| sub-07 | ses-03 | task-rsvp_language_dir-pa_run-00_jabberwocky-pseudo| -| sub-15 | ses-14 | task-mtt_we_dir-pa_run-01_eastside-westside_event| -| sub-15 | ses-14 | dir-pa_run-01_eastside-westside_event| -| sub-11 | ses-05 | task-archi_emotional_dir-ap_face_gender-control| -| sub-11 | ses-05 | dir-ap_face_gender-control| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Broca_44.md b/deploy/datasets/supplements/data/ibc/left_Broca_44.md deleted file mode 100644 index fa3228e5f..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Broca_44.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 44 (IFG) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 44 (IFG) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-02 | ses-06 | dir-pa_run-02_sentence-jabberwocky| -| sub-02 | ses-06 | task-rsvp_language_dir-pa_run-02_sentence-jabberwocky| -| sub-13 | ses-04 | dir-ffx_reading-checkerboard| -| sub-13 | ses-04 | task-archi_standard_ffx_reading-checkerboard| -| sub-13 | ses-04 | reading-checkerboard| -| sub-15 | ses-01 | task-archi_emotional_dir-pa_trusty_and_intention-gender| -| sub-15 | ses-01 | dir-pa_trusty_and_intention-gender| -| sub-13 | ses-00 | task-archi_standard_dir-pa_video_computation| -| sub-13 | ses-00 | dir-pa_video_computation| -| sub-01 | ses-07 | task-archi_emotional_dir-pa_expression_intention-gender| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Broca_45.md b/deploy/datasets/supplements/data/ibc/left_Broca_45.md deleted file mode 100644 index 1344e47bc..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Broca_45.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 45 (IFG) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 45 (IFG) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-09 | ses-04 | dir-pa_run-01_complex-consonant_string| -| sub-09 | ses-04 | task-rsvp_language_dir-pa_run-01_complex-consonant_string| -| sub-11 | ses-00 | task-archi_standard_ffx_cognitive-motor| -| sub-11 | ses-00 | cognitive-motor| -| sub-11 | ses-00 | task-archi_standard_dir-pa_cognitive-motor| -| sub-11 | ses-00 | dir-pa_cognitive-motor| -| sub-11 | ses-00 | dir-ffx_cognitive-motor| -| sub-05 | ses-03 | dir-pa_run-02_word-pseudo| -| sub-05 | ses-03 | task-rsvp_language_dir-pa_run-02_word-pseudo| -| sub-14 | ses-01 | dir-ap_expression_intention-gender| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Cerebellum_Ndentd.md b/deploy/datasets/supplements/data/ibc/left_Cerebellum_Ndentd.md deleted file mode 100644 index 45e568718..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Cerebellum_Ndentd.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Dorsal Dentate Nucleus (Cerebellum) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Dorsal Dentate Nucleus (Cerebellum) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-06 | ses-15 | dir-ap_painting_quadratic| -| sub-06 | ses-15 | task-preference_paintings_dir-ap_painting_quadratic| -| sub-01 | ses-04 | 2back_body| -| sub-12 | ses-00 | task-archi_standard_dir-ap_computation| -| sub-13 | ses-17 | dir-pa_enumeration_linear| -| sub-07 | ses-03 | task-rsvp_language_dir-ap_run-04_jabberwocky| -| sub-13 | ses-04 | task-archi_standard_ffx_sentences| -| sub-14 | ses-01 | dir-pa_non_speech_sound| -| sub-13 | ses-00 | dir-pa_right-left_button_press| -| sub-14 | ses-04 | dir-ap_run-05_word_list| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Cerebellum_Ndentv.md b/deploy/datasets/supplements/data/ibc/left_Cerebellum_Ndentv.md deleted file mode 100644 index 08d652e8e..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Cerebellum_Ndentv.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Ventral Dentate Nucleus (Cerebellum) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Ventral Dentate Nucleus (Cerebellum) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-01 | ses-04 | 2back_body| -| sub-12 | ses-00 | task-archi_standard_dir-ap_computation| -| sub-13 | ses-17 | dir-pa_enumeration_linear| -| sub-07 | ses-03 | task-rsvp_language_dir-ap_run-04_jabberwocky| -| sub-13 | ses-04 | task-archi_standard_ffx_sentences| -| sub-14 | ses-01 | dir-pa_non_speech_sound| -| sub-13 | ses-00 | dir-pa_right-left_button_press| -| sub-14 | ses-04 | dir-ap_run-05_word_list| -| sub-08 | ses-04 | task-rsvp_language_dir-pa_run-02_word_list| -| sub-06 | ses-00 | task-archi_standard_dir-ap_reading-listening| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Cerebellum_Nfast.md b/deploy/datasets/supplements/data/ibc/left_Cerebellum_Nfast.md deleted file mode 100644 index 10f8a840d..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Cerebellum_Nfast.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Fastigial Nucleus (Cerebellum) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Fastigial Nucleus (Cerebellum) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-01 | ses-04 | 2back_body| -| sub-12 | ses-00 | task-archi_standard_dir-ap_computation| -| sub-13 | ses-17 | dir-pa_enumeration_linear| -| sub-07 | ses-03 | task-rsvp_language_dir-ap_run-04_jabberwocky| -| sub-13 | ses-04 | task-archi_standard_ffx_sentences| -| sub-14 | ses-01 | dir-pa_non_speech_sound| -| sub-13 | ses-00 | dir-pa_right-left_button_press| -| sub-14 | ses-04 | dir-ap_run-05_word_list| -| sub-08 | ses-04 | task-rsvp_language_dir-pa_run-02_word_list| -| sub-06 | ses-00 | task-archi_standard_dir-ap_reading-listening| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Cerebellum_Ninterp.md b/deploy/datasets/supplements/data/ibc/left_Cerebellum_Ninterp.md deleted file mode 100644 index 9017572fb..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Cerebellum_Ninterp.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Interposed Nucleus (Cerebellum) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Interposed Nucleus (Cerebellum) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-06 | ses-15 | dir-ap_painting_quadratic| -| sub-06 | ses-15 | task-preference_paintings_dir-ap_painting_quadratic| -| sub-01 | ses-04 | 2back_body| -| sub-12 | ses-00 | task-archi_standard_dir-ap_computation| -| sub-13 | ses-17 | dir-pa_enumeration_linear| -| sub-07 | ses-03 | task-rsvp_language_dir-ap_run-04_jabberwocky| -| sub-13 | ses-04 | task-archi_standard_ffx_sentences| -| sub-14 | ses-01 | dir-pa_non_speech_sound| -| sub-13 | ses-00 | dir-pa_right-left_button_press| -| sub-14 | ses-04 | dir-ap_run-05_word_list| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Cingulum_25.md b/deploy/datasets/supplements/data/ibc/left_Cingulum_25.md deleted file mode 100644 index a93578fe2..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Cingulum_25.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 25 (sACC) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 25 (sACC) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-13 | ses-21 | task-self_dir-pa_run-01_recognition_self-other| -| sub-13 | ses-21 | dir-pa_run-01_recognition_self-other| -| sub-14 | ses-03 | 2back-0back| -| sub-14 | ses-03 | dir-ffx_2back-0back| -| sub-14 | ses-03 | task-hcp_wm_ffx_2back-0back| -| sub-07 | ses-11 | dir-pa_run-01_sn_all_space-time_cue| -| sub-07 | ses-11 | task-mtt_sn_dir-pa_run-01_sn_all_space-time_cue| -| sub-05 | ses-03 | task-rsvp_language_dir-pa_run-00_complex| -| sub-05 | ses-03 | dir-pa_run-00_complex| -| sub-01 | ses-20 | dir-pa_run-02_vstm_quadratic| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Cingulum_33.md b/deploy/datasets/supplements/data/ibc/left_Cingulum_33.md deleted file mode 100644 index 31987dab8..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Cingulum_33.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 33 (ACC) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 33 (ACC) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-16 | dir-pa_movie_pain| -| sub-07 | ses-16 | task-pain_movie_dir-pa_movie_pain| -| sub-05 | ses-11 | dir-ap_run-03_we_after-before_event| -| sub-05 | ses-11 | task-mtt_we_dir-ap_run-03_we_after-before_event| -| sub-07 | ses-03 | dir-pa_run-00_pseudo-consonant_string| -| sub-07 | ses-03 | task-rsvp_language_dir-pa_run-00_pseudo-consonant_string| -| sub-09 | ses-05 | dir-ap_triangle_mental| -| sub-09 | ses-05 | task-archi_social_dir-ap_triangle_mental| -| sub-12 | ses-03 | dir-ap_face_gender-control| -| sub-12 | ses-03 | task-archi_emotional_dir-ap_face_gender-control| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Cingulum_p24ab.md b/deploy/datasets/supplements/data/ibc/left_Cingulum_p24ab.md deleted file mode 100644 index e1b2affb5..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Cingulum_p24ab.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area p24ab (pACC) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area p24ab (pACC) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-09 | ses-05 | dir-ap_triangle_mental| -| sub-09 | ses-05 | task-archi_social_dir-ap_triangle_mental| -| sub-06 | ses-21 | task-self_dir-ap_run-04_encode_self-other| -| sub-06 | ses-21 | dir-ap_run-04_encode_self-other| -| sub-07 | ses-03 | dir-pa_run-00_pseudo-consonant_string| -| sub-07 | ses-03 | task-rsvp_language_dir-pa_run-00_pseudo-consonant_string| -| sub-07 | ses-16 | dir-pa_movie_pain| -| sub-07 | ses-16 | task-pain_movie_dir-pa_movie_pain| -| sub-15 | ses-02 | punishment-reward| -| sub-15 | ses-02 | task-hcp_gambling_ffx_punishment-reward| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Cingulum_p24c.md b/deploy/datasets/supplements/data/ibc/left_Cingulum_p24c.md deleted file mode 100644 index 95407300a..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Cingulum_p24c.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area p24c (pACC) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area p24c (pACC) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-08 | ses-11 | task-mtt_we_dir-pa_run-02_we_time-space_event| -| sub-08 | ses-11 | dir-pa_run-02_we_time-space_event| -| sub-02 | ses-00 | task-archi_social_ffx_false_belief-mechanistic_video| -| sub-02 | ses-00 | false_belief-mechanistic_video| -| sub-02 | ses-00 | dir-ffx_false_belief-mechanistic_video| -| sub-06 | ses-21 | task-self_dir-ap_run-04_encode_self-other| -| sub-06 | ses-21 | dir-ap_run-04_encode_self-other| -| sub-06 | ses-16 | dir-pa_movie_mental| -| sub-06 | ses-16 | task-pain_movie_dir-pa_movie_mental| -| sub-07 | ses-03 | dir-pa_run-00_pseudo-consonant_string| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Cingulum_p32.md b/deploy/datasets/supplements/data/ibc/left_Cingulum_p32.md deleted file mode 100644 index 499e3acac..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Cingulum_p32.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area p32 (pACC) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area p32 (pACC) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-13 | ses-21 | dir-pa_run-02_encode_self-other| -| sub-13 | ses-21 | task-self_dir-pa_run-02_encode_self-other| -| sub-11 | ses-12 | dir-ap_run-03_sn_all_space-time_cue| -| sub-11 | ses-12 | task-mtt_sn_dir-ap_run-03_sn_all_space-time_cue| -| sub-07 | ses-03 | task-rsvp_language_dir-pa_run-01_pseudo-consonant_string| -| sub-07 | ses-03 | dir-pa_run-01_pseudo-consonant_string| -| sub-05 | ses-20 | encode_self-other| -| sub-07 | ses-02 | dir-ap_0back-2back| -| sub-07 | ses-02 | task-hcp_wm_dir-ap_0back-2back| -| sub-09 | ses-22 | task-self_dir-pa_run-02_recognition_self-other| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Cingulum_s24.md b/deploy/datasets/supplements/data/ibc/left_Cingulum_s24.md deleted file mode 100644 index db647528c..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Cingulum_s24.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area s24 (sACC) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area s24 (sACC) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-05 | ses-03 | task-rsvp_language_dir-pa_run-00_complex| -| sub-05 | ses-03 | dir-pa_run-00_complex| -| sub-12 | ses-01 | dir-ap_math-story| -| sub-12 | ses-01 | task-hcp_language_dir-ap_math-story| -| sub-01 | ses-20 | dir-ap_enumeration_quadratic| -| sub-01 | ses-20 | task-enumeration_dir-ap_enumeration_quadratic| -| sub-07 | ses-11 | dir-pa_run-01_sn_all_space-time_cue| -| sub-07 | ses-11 | task-mtt_sn_dir-pa_run-01_sn_all_space-time_cue| -| sub-01 | ses-20 | dir-pa_run-02_vstm_quadratic| -| sub-01 | ses-20 | task-vstm_dir-pa_run-02_vstm_quadratic| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Cingulum_s32.md b/deploy/datasets/supplements/data/ibc/left_Cingulum_s32.md deleted file mode 100644 index ed6a37ab2..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Cingulum_s32.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area s32 (sACC) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area s32 (sACC) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-04 | task-archi_emotional_dir-ap_face_trusty-control| -| sub-07 | ses-04 | dir-ap_face_trusty-control| -| sub-09 | ses-05 | dir-ap_face_trusty-gender| -| sub-09 | ses-05 | task-archi_emotional_dir-ap_face_trusty-gender| -| sub-12 | ses-00 | task-archi_standard_dir-ap_left-right_button_press| -| sub-12 | ses-00 | dir-ap_left-right_button_press| -| sub-07 | ses-03 | task-rsvp_language_dir-pa_run-02_jabberwocky-pseudo| -| sub-07 | ses-03 | dir-pa_run-02_jabberwocky-pseudo| -| sub-04 | ses-21 | task-self_dir-pa_run-01_recognition_self-other| -| sub-04 | ses-21 | dir-pa_run-01_recognition_self-other| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_FrontalPole_Fp1.md b/deploy/datasets/supplements/data/ibc/left_FrontalPole_Fp1.md deleted file mode 100644 index 073e0739b..000000000 --- a/deploy/datasets/supplements/data/ibc/left_FrontalPole_Fp1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area Fp1 (FPole) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area Fp1 (FPole) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-14 | ses-03 | task-hcp_relational_dir-pa_relational-match| -| sub-14 | ses-03 | dir-pa_relational-match| -| sub-05 | ses-01 | dir-ap_story| -| sub-05 | ses-01 | task-hcp_language_dir-ap_story| -| sub-12 | ses-11 | task-mtt_we_dir-pa_run-01_we_time-space_event| -| sub-12 | ses-11 | dir-pa_run-01_we_time-space_event| -| sub-15 | ses-04 | dir-ap_run-05_sentence-word| -| sub-15 | ses-04 | task-rsvp_language_dir-ap_run-05_sentence-word| -| sub-13 | ses-11 | task-mtt_we_dir-pa_run-02_westside-eastside_event| -| sub-13 | ses-11 | dir-pa_run-02_westside-eastside_event| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_FrontalPole_Fp2.md b/deploy/datasets/supplements/data/ibc/left_FrontalPole_Fp2.md deleted file mode 100644 index 7ffb4dfee..000000000 --- a/deploy/datasets/supplements/data/ibc/left_FrontalPole_Fp2.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area Fp2 (FPole) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area Fp2 (FPole) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-12 | ses-03 | task-archi_emotional_dir-pa_face_trusty-gender| -| sub-12 | ses-03 | dir-pa_face_trusty-gender| -| sub-06 | ses-03 | dir-pa_run-01_complex| -| sub-06 | ses-03 | task-rsvp_language_dir-pa_run-01_complex| -| sub-06 | ses-03 | task-rsvp_language_dir-pa_run-01_probe| -| sub-06 | ses-03 | dir-pa_run-01_probe| -| sub-07 | ses-03 | dir-pa_run-01_complex| -| sub-07 | ses-03 | task-rsvp_language_dir-pa_run-01_complex| -| sub-05 | ses-03 | dir-pa_run-01_sentence-word| -| sub-05 | ses-03 | task-rsvp_language_dir-pa_run-01_sentence-word| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Hippocampus_DG.md b/deploy/datasets/supplements/data/ibc/left_Hippocampus_DG.md deleted file mode 100644 index 6270c9d99..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Hippocampus_DG.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in DG (Hippocampus) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in DG (Hippocampus) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-05 | ses-00 | task-archi_spatial_dir-pa_hand-side| -| sub-05 | ses-00 | dir-pa_hand-side| -| sub-07 | ses-23 | dir-pa_run-02_encode_self-other| -| sub-07 | ses-23 | task-self_dir-pa_run-02_encode_self-other| -| sub-07 | ses-12 | dir-pa_run-02_we_space-time_event| -| sub-07 | ses-12 | task-mtt_we_dir-pa_run-02_we_space-time_event| -| sub-15 | ses-20 | task-self_dir-pa_run-01_recognition_self-other| -| sub-15 | ses-20 | dir-pa_run-01_recognition_self-other| -| sub-11 | ses-11 | dir-ap_run-03_we_eastside_event| -| sub-11 | ses-11 | task-mtt_we_dir-ap_run-03_we_eastside_event| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Hippocampus_HATA.md b/deploy/datasets/supplements/data/ibc/left_Hippocampus_HATA.md deleted file mode 100644 index e1735bb7e..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Hippocampus_HATA.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in HATA (Hippocampus) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in HATA (Hippocampus) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-05 | ses-20 | task-self_dir-pa_run-01_encode_self-other| -| sub-05 | ses-20 | dir-pa_run-01_encode_self-other| -| sub-05 | ses-03 | task-rsvp_language_dir-ap_run-05_jabberwocky-pseudo| -| sub-05 | ses-03 | dir-ap_run-05_jabberwocky-pseudo| -| sub-07 | ses-11 | dir-ap_run-03_southside-northside_event| -| sub-07 | ses-11 | task-mtt_sn_dir-ap_run-03_southside-northside_event| -| sub-05 | ses-00 | task-archi_standard_dir-pa_left-right_button_press| -| sub-05 | ses-00 | dir-pa_left-right_button_press| -| sub-06 | ses-12 | dir-ap_run-03_northside-southside_event| -| sub-06 | ses-12 | task-mtt_sn_dir-ap_run-03_northside-southside_event| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Hippocampus_Subc.md b/deploy/datasets/supplements/data/ibc/left_Hippocampus_Subc.md deleted file mode 100644 index 507443a12..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Hippocampus_Subc.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Subiculum (Hippocampus) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Subiculum (Hippocampus) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-13 | ses-12 | task-mtt_sn_dir-pa_run-02_sn_time-space_event| -| sub-13 | ses-12 | dir-pa_run-02_sn_time-space_event| -| sub-15 | ses-15 | sn_all_time-space_cue| -| sub-13 | ses-17 | task-enumeration_dir-ap_enumeration_quadratic| -| sub-13 | ses-17 | dir-ap_enumeration_quadratic| -| sub-04 | ses-03 | task-rsvp_language_dir-pa_run-02_jabberwocky-pseudo| -| sub-04 | ses-03 | dir-pa_run-02_jabberwocky-pseudo| -| sub-09 | ses-16 | dir-pa_face_linear| -| sub-09 | ses-16 | task-preference_faces_dir-pa_face_linear| -| sub-06 | ses-12 | dir-ap_run-03_northside-southside_event| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_IPL_PF.md b/deploy/datasets/supplements/data/ibc/left_IPL_PF.md deleted file mode 100644 index ede339178..000000000 --- a/deploy/datasets/supplements/data/ibc/left_IPL_PF.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area PF (IPL) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area PF (IPL) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-01 | ses-07 | task-archi_social_ffx_mechanistic_audio| -| sub-01 | ses-07 | dir-ffx_mechanistic_audio| -| sub-01 | ses-07 | mechanistic_audio| -| sub-01 | ses-07 | dir-pa_false_belief_audio| -| sub-01 | ses-07 | task-archi_social_dir-pa_false_belief_audio| -| sub-01 | ses-07 | false_belief_audio| -| sub-01 | ses-07 | dir-ffx_false_belief_audio| -| sub-01 | ses-07 | task-archi_social_dir-ap_false_belief_audio| -| sub-01 | ses-07 | dir-ap_false_belief_audio| -| sub-01 | ses-07 | task-archi_social_ffx_false_belief_audio| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_IPL_PFcm.md b/deploy/datasets/supplements/data/ibc/left_IPL_PFcm.md deleted file mode 100644 index fc5515abf..000000000 --- a/deploy/datasets/supplements/data/ibc/left_IPL_PFcm.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area PFcm (IPL) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area PFcm (IPL) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-13 | ses-03 | task-rsvp_language_dir-pa_run-01_complex| -| sub-13 | ses-03 | dir-pa_run-01_complex| -| sub-05 | ses-20 | recognition_self_hit| -| sub-05 | ses-04 | dir-ffx_computation| -| sub-05 | ses-04 | computation| -| sub-05 | ses-04 | task-archi_standard_ffx_computation| -| sub-14 | ses-02 | task-hcp_motor_dir-ap_left_hand| -| sub-14 | ses-02 | dir-ap_left_hand| -| sub-14 | ses-02 | dir-ap_cue| -| sub-14 | ses-02 | task-hcp_motor_dir-ap_cue| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_IPL_PFm.md b/deploy/datasets/supplements/data/ibc/left_IPL_PFm.md deleted file mode 100644 index 8b74ded8e..000000000 --- a/deploy/datasets/supplements/data/ibc/left_IPL_PFm.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area PFm (IPL) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area PFm (IPL) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-05 | ses-03 | dir-pa_run-00_sentence-pseudo| -| sub-05 | ses-03 | task-rsvp_language_dir-pa_run-00_sentence-pseudo| -| sub-11 | ses-12 | task-mtt_sn_dir-pa_run-01_sn_all_event_response| -| sub-11 | ses-12 | dir-pa_run-01_sn_all_event_response| -| sub-12 | ses-11 | dir-pa_run-02_westside-eastside_event| -| sub-12 | ses-11 | task-mtt_we_dir-pa_run-02_westside-eastside_event| -| sub-04 | ses-03 | dir-ap_run-03_complex-simple| -| sub-04 | ses-03 | task-rsvp_language_dir-ap_run-03_complex-simple| -| sub-01 | ses-18 | dir-ffx_movie_mental-pain| -| sub-01 | ses-18 | movie_mental-pain| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_IPL_PFop.md b/deploy/datasets/supplements/data/ibc/left_IPL_PFop.md deleted file mode 100644 index 95f9a9ae0..000000000 --- a/deploy/datasets/supplements/data/ibc/left_IPL_PFop.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area PFop (IPL) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area PFop (IPL) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-15 | ses-01 | dir-pa_motor-cognitive| -| sub-15 | ses-01 | task-archi_standard_dir-pa_motor-cognitive| -| sub-14 | ses-17 | dir-pa_run-02_vstm_constant| -| sub-14 | ses-17 | task-vstm_dir-pa_run-02_vstm_constant| -| sub-13 | ses-03 | dir-ap_run-05_jabberwocky-consonant_string| -| sub-13 | ses-03 | task-rsvp_language_dir-ap_run-05_jabberwocky-consonant_string| -| sub-14 | ses-01 | task-archi_standard_dir-pa_motor-cognitive| -| sub-14 | ses-01 | dir-pa_motor-cognitive| -| sub-05 | ses-04 | dir-ffx_motor-cognitive| -| sub-05 | ses-04 | motor-cognitive| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_IPL_PFt.md b/deploy/datasets/supplements/data/ibc/left_IPL_PFt.md deleted file mode 100644 index eb3040dd5..000000000 --- a/deploy/datasets/supplements/data/ibc/left_IPL_PFt.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area PFt (IPL) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area PFt (IPL) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-15 | ses-01 | dir-ffx_motor-cognitive| -| sub-15 | ses-01 | task-archi_standard_ffx_motor-cognitive| -| sub-15 | ses-01 | motor-cognitive| -| sub-09 | ses-22 | task-self_dir-ap_run-03_recognition_hit-correct_rejection| -| sub-09 | ses-22 | dir-ap_run-03_recognition_hit-correct_rejection| -| sub-14 | ses-01 | dir-pa_expression_gender-control| -| sub-14 | ses-01 | task-archi_emotional_dir-pa_expression_gender-control| -| sub-15 | ses-10 | task-vstm_dir-ap_run-01_vstm_constant| -| sub-15 | ses-10 | dir-ap_run-01_vstm_constant| -| sub-04 | ses-04 | dir-pa_grasp-orientation| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_IPL_PGa.md b/deploy/datasets/supplements/data/ibc/left_IPL_PGa.md deleted file mode 100644 index 13398a3df..000000000 --- a/deploy/datasets/supplements/data/ibc/left_IPL_PGa.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area PGa (IPL) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area PGa (IPL) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-00 | dir-pa_false_belief-mechanistic| -| sub-07 | ses-00 | task-archi_social_dir-pa_false_belief-mechanistic| -| sub-01 | ses-07 | task-archi_emotional_dir-pa_face_trusty-gender| -| sub-01 | ses-07 | dir-pa_face_trusty-gender| -| sub-11 | ses-11 | task-mtt_we_dir-ap_run-03_we_all_event_response| -| sub-11 | ses-11 | dir-ap_run-03_we_all_event_response| -| sub-05 | ses-16 | task-pain_movie_dir-pa_movie_mental| -| sub-05 | ses-16 | task-pain_movie_ffx_movie_mental| -| sub-05 | ses-16 | dir-pa_movie_mental| -| sub-05 | ses-16 | dir-ffx_movie_mental| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_IPL_PGp.md b/deploy/datasets/supplements/data/ibc/left_IPL_PGp.md deleted file mode 100644 index 5119fc4d9..000000000 --- a/deploy/datasets/supplements/data/ibc/left_IPL_PGp.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area PGp (IPL) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area PGp (IPL) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-02 | ses-06 | dir-ap_run-03_sentence-word| -| sub-02 | ses-06 | task-rsvp_language_dir-ap_run-03_sentence-word| -| sub-14 | ses-16 | task-emotional_pain_dir-pa_emotional-physical_pain| -| sub-14 | ses-16 | dir-pa_emotional-physical_pain| -| sub-09 | ses-05 | dir-ap_reading-checkerboard| -| sub-09 | ses-05 | task-archi_standard_dir-ap_reading-checkerboard| -| sub-14 | ses-16 | emotional-physical_pain| -| sub-14 | ses-16 | task-emotional_pain_ffx_emotional-physical_pain| -| sub-14 | ses-16 | dir-ffx_emotional-physical_pain| -| sub-08 | ses-01 | task-archi_standard_dir-pa_reading-checkerboard| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Insula_Id1.md b/deploy/datasets/supplements/data/ibc/left_Insula_Id1.md deleted file mode 100644 index 16516c0c7..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Insula_Id1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area Id1 (Insula) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area Id1 (Insula) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-01 | ses-07 | task-archi_social_dir-pa_speech_sound| -| sub-01 | ses-07 | dir-pa_speech_sound| -| sub-06 | ses-03 | task-rsvp_language_dir-ap_run-03_word-pseudo| -| sub-06 | ses-03 | dir-ap_run-03_word-pseudo| -| sub-09 | ses-13 | dir-ap_run-03_sn_all_time-space_cue| -| sub-09 | ses-13 | task-mtt_sn_dir-ap_run-03_sn_all_time-space_cue| -| sub-14 | ses-11 | task-mtt_we_dir-pa_run-01_we_after-before_event| -| sub-14 | ses-11 | dir-pa_run-01_we_after-before_event| -| sub-05 | ses-04 | task-archi_emotional_dir-ap_face_trusty-gender| -| sub-05 | ses-04 | dir-ap_face_trusty-gender| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Insula_Id7.md b/deploy/datasets/supplements/data/ibc/left_Insula_Id7.md deleted file mode 100644 index 7f967dfb0..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Insula_Id7.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area Id7 (Insula) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area Id7 (Insula) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-14 | ses-13 | dir-ffx_painting_linear| -| sub-14 | ses-13 | task-preference_paintings_ffx_painting_linear| -| sub-14 | ses-13 | painting_linear| -| sub-09 | ses-18 | task-enumeration_ffx_enumeration_linear| -| sub-09 | ses-18 | enumeration_linear| -| sub-09 | ses-18 | dir-ffx_enumeration_linear| -| sub-04 | ses-03 | dir-ap_run-05_word-pseudo| -| sub-04 | ses-03 | task-rsvp_language_dir-ap_run-05_word-pseudo| -| sub-09 | ses-05 | dir-ap_mechanistic_audio| -| sub-09 | ses-05 | task-archi_social_dir-ap_mechanistic_audio| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Insula_Ig1.md b/deploy/datasets/supplements/data/ibc/left_Insula_Ig1.md deleted file mode 100644 index b31b7be89..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Insula_Ig1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area Ig1 (Insula) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area Ig1 (Insula) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-11 | task-mtt_sn_dir-pa_run-01_sn_after-before_event| -| sub-07 | ses-11 | dir-pa_run-01_sn_after-before_event| -| sub-02 | ses-04 | task-hcp_gambling_dir-ap_punishment-reward| -| sub-02 | ses-04 | dir-ap_punishment-reward| -| sub-07 | ses-11 | task-mtt_sn_dir-pa_run-01_sn_all_time-space_cue| -| sub-07 | ses-11 | dir-pa_run-01_sn_all_time-space_cue| -| sub-01 | ses-07 | task-archi_social_dir-ap_triangle_random| -| sub-01 | ses-07 | dir-ap_triangle_random| -| sub-11 | ses-12 | dir-pa_run-02_sn_all_event_response| -| sub-11 | ses-12 | task-mtt_sn_dir-pa_run-02_sn_all_event_response| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Insula_Ig2.md b/deploy/datasets/supplements/data/ibc/left_Insula_Ig2.md deleted file mode 100644 index 40e2e1483..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Insula_Ig2.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area Ig2 (Insula) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area Ig2 (Insula) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-09 | ses-04 | dir-pa_run-02_word-consonant_string| -| sub-09 | ses-04 | task-rsvp_language_dir-pa_run-02_word-consonant_string| -| sub-11 | ses-12 | dir-pa_run-02_sn_all_event_response| -| sub-11 | ses-12 | task-mtt_sn_dir-pa_run-02_sn_all_event_response| -| sub-15 | ses-15 | task-mtt_sn_dir-ap_run-03_sn_all_space-time_cue| -| sub-15 | ses-15 | dir-ap_run-03_sn_all_space-time_cue| -| sub-12 | ses-12 | dir-pa_run-01_southside-northside_event| -| sub-12 | ses-12 | task-mtt_sn_dir-pa_run-01_southside-northside_event| -| sub-01 | ses-05 | task-rsvp_language_dir-pa_run-01_jabberwocky-pseudo| -| sub-01 | ses-05 | dir-pa_run-01_jabberwocky-pseudo| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Motor_4a.md b/deploy/datasets/supplements/data/ibc/left_Motor_4a.md deleted file mode 100644 index 3bd5d7b52..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Motor_4a.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 4a (PreCG) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 4a (PreCG) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-09 | ses-05 | task-archi_standard_dir-pa_right-left_button_press| -| sub-09 | ses-05 | dir-pa_right-left_button_press| -| sub-09 | ses-05 | task-archi_standard_ffx_right-left_button_press| -| sub-09 | ses-05 | dir-ffx_right-left_button_press| -| sub-09 | ses-05 | right-left_button_press| -| sub-12 | ses-00 | right-left_button_press| -| sub-12 | ses-00 | task-archi_standard_ffx_right-left_button_press| -| sub-12 | ses-00 | dir-ffx_right-left_button_press| -| sub-11 | ses-00 | dir-pa_object_grasp| -| sub-11 | ses-00 | task-archi_spatial_dir-pa_object_grasp| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Motor_4p.md b/deploy/datasets/supplements/data/ibc/left_Motor_4p.md deleted file mode 100644 index dfaac8beb..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Motor_4p.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 4p (PreCG) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 4p (PreCG) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-14 | ses-00 | dir-pa_right-left_button_press| -| sub-14 | ses-00 | task-archi_standard_dir-pa_right-left_button_press| -| sub-14 | ses-00 | task-archi_standard_dir-pa_video_right_button_press| -| sub-14 | ses-00 | dir-pa_video_right_button_press| -| sub-11 | ses-05 | dir-ap_right-left_button_press| -| sub-11 | ses-05 | task-archi_standard_dir-ap_right-left_button_press| -| sub-14 | ses-02 | task-hcp_motor_dir-ap_right_hand-avg| -| sub-14 | ses-02 | dir-ap_right_hand-avg| -| sub-14 | ses-02 | dir-ffx_right_hand| -| sub-14 | ses-02 | task-hcp_motor_dir-ap_right_hand| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_OFC_Fo1.md b/deploy/datasets/supplements/data/ibc/left_OFC_Fo1.md deleted file mode 100644 index 64a6cc2da..000000000 --- a/deploy/datasets/supplements/data/ibc/left_OFC_Fo1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area Fo1 (OFC) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area Fo1 (OFC) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-12 | ses-01 | task-hcp_gambling_ffx_reward-punishment| -| sub-12 | ses-01 | reward-punishment| -| sub-12 | ses-01 | dir-ffx_reward-punishment| -| sub-12 | ses-01 | dir-ap_reward-punishment| -| sub-12 | ses-01 | task-hcp_gambling_dir-ap_reward-punishment| -| sub-07 | ses-15 | task-preference_paintings_ffx_painting_quadratic| -| sub-07 | ses-15 | dir-ffx_painting_quadratic| -| sub-07 | ses-15 | painting_quadratic| -| sub-07 | ses-12 | task-mtt_we_dir-pa_run-02_we_before-after_event| -| sub-07 | ses-12 | dir-pa_run-02_we_before-after_event| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_OFC_Fo2.md b/deploy/datasets/supplements/data/ibc/left_OFC_Fo2.md deleted file mode 100644 index fcb592274..000000000 --- a/deploy/datasets/supplements/data/ibc/left_OFC_Fo2.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area Fo2 (OFC) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area Fo2 (OFC) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-04 | ses-03 | task-rsvp_language_dir-ap_run-04_jabberwocky-pseudo| -| sub-04 | ses-03 | dir-ap_run-04_jabberwocky-pseudo| -| sub-11 | ses-11 | task-mtt_we_dir-pa_run-01_we_before-after_event| -| sub-11 | ses-11 | dir-pa_run-01_we_before-after_event| -| sub-13 | ses-15 | dir-pa_painting_linear| -| sub-13 | ses-15 | task-preference_paintings_dir-pa_painting_linear| -| sub-15 | ses-15 | sn_all_space-time_cue| -| sub-11 | ses-12 | dir-pa_run-01_southside-northside_event| -| sub-11 | ses-12 | task-mtt_sn_dir-pa_run-01_southside-northside_event| -| sub-07 | ses-03 | task-rsvp_language_dir-pa_run-02_jabberwocky-pseudo| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_OFC_Fo3.md b/deploy/datasets/supplements/data/ibc/left_OFC_Fo3.md deleted file mode 100644 index 9bb5897ee..000000000 --- a/deploy/datasets/supplements/data/ibc/left_OFC_Fo3.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area Fo3 (OFC) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area Fo3 (OFC) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-04 | ses-15 | task-preference_houses_dir-ap_house_quadratic| -| sub-04 | ses-15 | dir-ffx_house_quadratic| -| sub-04 | ses-15 | house_quadratic| -| sub-04 | ses-15 | task-preference_houses_ffx_house_quadratic| -| sub-04 | ses-15 | dir-ap_house_quadratic| -| sub-11 | ses-05 | dir-ap_face_trusty-control| -| sub-11 | ses-05 | task-archi_emotional_dir-ap_face_trusty-control| -| sub-12 | ses-00 | dir-ap_audio_left_button_press| -| sub-12 | ses-00 | task-archi_standard_dir-ap_audio_left_button_press| -| sub-07 | ses-03 | task-rsvp_language_dir-pa_run-01_sentence-jabberwocky| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Operculum_OP1.md b/deploy/datasets/supplements/data/ibc/left_Operculum_OP1.md deleted file mode 100644 index 147f29db3..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Operculum_OP1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area OP1 (POperc) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area OP1 (POperc) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-05 | ses-04 | dir-ffx_motor-cognitive| -| sub-05 | ses-04 | motor-cognitive| -| sub-05 | ses-04 | task-archi_standard_ffx_motor-cognitive| -| sub-04 | ses-03 | dir-pa_run-00_probe| -| sub-04 | ses-03 | task-rsvp_language_dir-pa_run-00_probe| -| sub-04 | ses-11 | task-mtt_we_dir-ap_run-03_we_all_space-time_cue| -| sub-04 | ses-11 | dir-ap_run-03_we_all_space-time_cue| -| sub-05 | ses-02 | dir-pa_0back_place| -| sub-05 | ses-02 | task-hcp_wm_dir-pa_0back_place| -| sub-14 | ses-04 | task-rsvp_language_dir-pa_run-00_probe| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Operculum_OP2.md b/deploy/datasets/supplements/data/ibc/left_Operculum_OP2.md deleted file mode 100644 index 782b4f567..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Operculum_OP2.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area OP2 (POperc) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area OP2 (POperc) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-11 | task-mtt_sn_dir-pa_run-01_sn_all_time-space_cue| -| sub-07 | ses-11 | dir-pa_run-01_sn_all_time-space_cue| -| sub-09 | ses-01 | task-hcp_gambling_dir-pa_punishment-reward| -| sub-09 | ses-01 | dir-pa_punishment-reward| -| sub-07 | ses-11 | task-mtt_sn_dir-pa_run-01_sn_after-before_event| -| sub-07 | ses-11 | dir-pa_run-01_sn_after-before_event| -| sub-09 | ses-04 | dir-pa_run-02_word-consonant_string| -| sub-09 | ses-04 | task-rsvp_language_dir-pa_run-02_word-consonant_string| -| sub-08 | ses-11 | task-mtt_we_dir-pa_run-02_we_after-before_event| -| sub-08 | ses-11 | dir-pa_run-02_we_after-before_event| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Operculum_OP3.md b/deploy/datasets/supplements/data/ibc/left_Operculum_OP3.md deleted file mode 100644 index 8482bca46..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Operculum_OP3.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area OP3 (POperc) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area OP3 (POperc) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-04 | ses-17 | dir-pa_run-01_vstm_linear| -| sub-04 | ses-17 | task-vstm_dir-pa_run-01_vstm_linear| -| sub-07 | ses-15 | dir-ffx_face_quadratic| -| sub-07 | ses-15 | task-preference_faces_ffx_face_quadratic| -| sub-07 | ses-15 | face_quadratic| -| sub-12 | ses-00 | dir-pa_right-left_button_press| -| sub-12 | ses-00 | task-archi_standard_dir-pa_right-left_button_press| -| sub-07 | ses-23 | task-self_dir-pa_run-01_recognition_self-other| -| sub-07 | ses-23 | dir-pa_run-01_recognition_self-other| -| sub-11 | ses-18 | task-emotional_pain_dir-pa_emotional-physical_pain| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Operculum_OP4.md b/deploy/datasets/supplements/data/ibc/left_Operculum_OP4.md deleted file mode 100644 index d59cd3ae0..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Operculum_OP4.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area OP4 (POperc) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area OP4 (POperc) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-08 | ses-01 | dir-ap_motor-cognitive| -| sub-08 | ses-01 | task-archi_standard_dir-ap_motor-cognitive| -| sub-02 | ses-04 | dir-pa_tongue| -| sub-02 | ses-04 | task-hcp_motor_dir-pa_tongue| -| sub-04 | ses-16 | task-theory_of_mind_dir-pa_belief| -| sub-04 | ses-16 | dir-pa_belief| -| sub-06 | ses-01 | task-hcp_motor_dir-pa_tongue| -| sub-06 | ses-01 | dir-pa_tongue| -| sub-02 | ses-01 | dir-pa_listening-reading| -| sub-02 | ses-01 | task-archi_standard_dir-pa_listening-reading| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_PIPS_hIP4.md b/deploy/datasets/supplements/data/ibc/left_PIPS_hIP4.md deleted file mode 100644 index 6fd97460b..000000000 --- a/deploy/datasets/supplements/data/ibc/left_PIPS_hIP4.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hIP4 (IPS) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hIP4 (IPS) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-12 | ses-02 | task-hcp_wm_dir-ap_place-avg| -| sub-12 | ses-02 | dir-ap_place-avg| -| sub-12 | ses-02 | dir-ffx_place-avg| -| sub-12 | ses-02 | place-avg| -| sub-12 | ses-02 | task-hcp_wm_ffx_place-avg| -| sub-09 | ses-16 | task-preference_paintings_dir-ap_painting_constant| -| sub-09 | ses-16 | dir-ap_painting_constant| -| sub-13 | ses-03 | dir-ap_run-05_word-pseudo| -| sub-13 | ses-03 | task-rsvp_language_dir-ap_run-05_word-pseudo| -| sub-02 | ses-01 | object_orientation| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_PIPS_hIP5.md b/deploy/datasets/supplements/data/ibc/left_PIPS_hIP5.md deleted file mode 100644 index 05003636f..000000000 --- a/deploy/datasets/supplements/data/ibc/left_PIPS_hIP5.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hIP5 (IPS) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hIP5 (IPS) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-02 | ses-00 | dir-pa_cognitive-motor| -| sub-02 | ses-00 | task-archi_standard_dir-pa_cognitive-motor| -| sub-09 | ses-05 | task-archi_emotional_dir-ap_expression_intention-gender| -| sub-09 | ses-05 | dir-ap_expression_intention-gender| -| sub-01 | ses-00 | task-archi_standard_ffx_computation-sentences| -| sub-01 | ses-00 | computation-sentences| -| sub-01 | ses-00 | dir-ffx_computation-sentences| -| sub-12 | ses-12 | dir-pa_run-01_northside-southside_event| -| sub-12 | ses-12 | task-mtt_sn_dir-pa_run-01_northside-southside_event| -| sub-09 | ses-01 | dir-pa_shape-face| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_PIPS_hIP6.md b/deploy/datasets/supplements/data/ibc/left_PIPS_hIP6.md deleted file mode 100644 index 2d10f493b..000000000 --- a/deploy/datasets/supplements/data/ibc/left_PIPS_hIP6.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hIP6 (IPS) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hIP6 (IPS) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-02 | ses-01 | computation| -| sub-02 | ses-01 | task-archi_standard_ffx_computation| -| sub-02 | ses-01 | dir-ffx_computation| -| sub-08 | ses-01 | dir-ap_cognitive-motor| -| sub-08 | ses-01 | task-archi_standard_dir-ap_cognitive-motor| -| sub-09 | ses-12 | we_all_space-time_cue| -| sub-15 | ses-02 | task-hcp_language_dir-ap_math-story| -| sub-15 | ses-02 | dir-ap_math-story| -| sub-04 | ses-00 | task-archi_standard_dir-pa_computation| -| sub-04 | ses-00 | dir-pa_computation| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_PIPS_hIP7.md b/deploy/datasets/supplements/data/ibc/left_PIPS_hIP7.md deleted file mode 100644 index ff47afbb2..000000000 --- a/deploy/datasets/supplements/data/ibc/left_PIPS_hIP7.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hIP7 (IPS) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hIP7 (IPS) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-15 | task-preference_food_ffx_food_linear| -| sub-07 | ses-15 | dir-ffx_food_linear| -| sub-07 | ses-15 | food_linear| -| sub-07 | ses-00 | task-archi_social_dir-ap_false_belief_audio| -| sub-07 | ses-00 | dir-ap_false_belief_audio| -| sub-14 | ses-16 | dir-ap_emotional_pain| -| sub-14 | ses-16 | task-emotional_pain_dir-ap_emotional_pain| -| sub-14 | ses-16 | task-emotional_pain_ffx_emotional_pain| -| sub-14 | ses-16 | dir-ffx_emotional_pain| -| sub-14 | ses-16 | emotional_pain| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_PIPS_hIP8.md b/deploy/datasets/supplements/data/ibc/left_PIPS_hIP8.md deleted file mode 100644 index 9f532743d..000000000 --- a/deploy/datasets/supplements/data/ibc/left_PIPS_hIP8.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hIP8 (IPS) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hIP8 (IPS) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-12 | ses-04 | consonant_string| -| sub-06 | ses-00 | dir-pa_grasp-orientation| -| sub-06 | ses-00 | task-archi_spatial_dir-pa_grasp-orientation| -| sub-06 | ses-00 | task-archi_spatial_ffx_grasp-orientation| -| sub-06 | ses-00 | dir-ffx_grasp-orientation| -| sub-06 | ses-00 | grasp-orientation| -| sub-01 | ses-07 | task-archi_spatial_dir-ap_hand-side| -| sub-01 | ses-07 | dir-ap_hand-side| -| sub-04 | ses-15 | task-preference_houses_ffx_house_linear| -| sub-04 | ses-15 | dir-ffx_house_linear| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_PIPS_hPO1.md b/deploy/datasets/supplements/data/ibc/left_PIPS_hPO1.md deleted file mode 100644 index 800034d62..000000000 --- a/deploy/datasets/supplements/data/ibc/left_PIPS_hPO1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hPO1 (POS) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hPO1 (POS) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-04 | ses-17 | task-vstm_dir-pa_run-02_vstm_linear| -| sub-04 | ses-17 | dir-pa_run-02_vstm_linear| -| sub-07 | ses-00 | dir-pa_cognitive-motor| -| sub-07 | ses-00 | task-archi_standard_dir-pa_cognitive-motor| -| sub-12 | ses-16 | task-preference_food_dir-ap_food_constant| -| sub-12 | ses-16 | dir-ap_food_constant| -| sub-12 | ses-16 | dir-ap_house_constant| -| sub-12 | ses-16 | task-preference_houses_dir-ap_house_constant| -| sub-15 | ses-03 | dir-ap_0back-2back| -| sub-15 | ses-03 | task-hcp_wm_dir-ap_0back-2back| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_PSC_1.md b/deploy/datasets/supplements/data/ibc/left_PSC_1.md deleted file mode 100644 index 4f8f2e4cc..000000000 --- a/deploy/datasets/supplements/data/ibc/left_PSC_1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 1 (PostCG) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 1 (PostCG) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-01 | ses-00 | dir-ffx_right-left_button_press| -| sub-01 | ses-00 | dir-ap_right-left_button_press| -| sub-01 | ses-00 | task-archi_standard_dir-ap_right-left_button_press| -| sub-01 | ses-00 | right-left_button_press| -| sub-01 | ses-00 | task-archi_standard_ffx_right-left_button_press| -| sub-05 | ses-11 | task-mtt_we_dir-ap_run-03_eastside-westside_event| -| sub-02 | ses-00 | dir-ap_right-left_button_press| -| sub-02 | ses-00 | task-archi_standard_ffx_right-left_button_press| -| sub-15 | ses-14 | we_after-before_event| -| sub-15 | ses-14 | task-mtt_we_dir-pa_run-02_we_after-before_event| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_PSC_2.md b/deploy/datasets/supplements/data/ibc/left_PSC_2.md deleted file mode 100644 index 417ee14f2..000000000 --- a/deploy/datasets/supplements/data/ibc/left_PSC_2.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 2 (PostCS) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 2 (PostCS) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-12 | ses-16 | task-preference_food_dir-ap_food_linear| -| sub-12 | ses-16 | dir-ap_food_linear| -| sub-09 | ses-13 | sn_all_time-space_cue| -| sub-05 | ses-02 | 2back-0back| -| sub-05 | ses-02 | dir-ffx_2back-0back| -| sub-05 | ses-02 | task-hcp_wm_ffx_2back-0back| -| sub-09 | ses-05 | dir-pa_grasp-orientation| -| sub-09 | ses-05 | task-archi_spatial_dir-pa_grasp-orientation| -| sub-07 | ses-00 | dir-ffx_motor-cognitive| -| sub-07 | ses-00 | motor-cognitive| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_PSC_3a.md b/deploy/datasets/supplements/data/ibc/left_PSC_3a.md deleted file mode 100644 index 63fa432d8..000000000 --- a/deploy/datasets/supplements/data/ibc/left_PSC_3a.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 3a (PostCG) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 3a (PostCG) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-09 | ses-12 | task-mtt_we_dir-pa_run-02_we_after-before_event| -| sub-09 | ses-12 | dir-pa_run-02_we_after-before_event| -| sub-14 | ses-00 | dir-ap_grasp-orientation| -| sub-14 | ses-00 | task-archi_spatial_dir-ap_grasp-orientation| -| sub-11 | ses-22 | dir-ap_run-04_correct_rejection| -| sub-11 | ses-22 | task-self_dir-ap_run-04_correct_rejection| -| sub-14 | ses-02 | dir-pa_right_foot-avg| -| sub-14 | ses-02 | task-hcp_motor_dir-pa_right_foot-avg| -| sub-05 | ses-20 | task-self_dir-ap_run-03_instructions| -| sub-05 | ses-20 | dir-ap_run-03_instructions| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_PSC_3b.md b/deploy/datasets/supplements/data/ibc/left_PSC_3b.md deleted file mode 100644 index 1f1236705..000000000 --- a/deploy/datasets/supplements/data/ibc/left_PSC_3b.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 3b (PostCG) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 3b (PostCG) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-13 | ses-01 | dir-ap_tongue| -| sub-13 | ses-01 | task-hcp_motor_dir-ap_tongue| -| sub-09 | ses-01 | task-hcp_emotion_dir-pa_shape| -| sub-09 | ses-01 | dir-pa_shape| -| sub-06 | ses-00 | task-archi_standard_dir-ap_video_left_button_press| -| sub-06 | ses-00 | dir-ap_video_left_button_press| -| sub-02 | ses-01 | dir-ffx_motor-cognitive| -| sub-02 | ses-01 | task-archi_standard_ffx_motor-cognitive| -| sub-02 | ses-01 | motor-cognitive| -| sub-13 | ses-12 | sn_space-time_event| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Premotor_6d1.md b/deploy/datasets/supplements/data/ibc/left_Premotor_6d1.md deleted file mode 100644 index ae0f157a6..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Premotor_6d1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 6d1 (PreCG) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 6d1 (PreCG) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-12 | ses-00 | dir-ap_object_grasp| -| sub-12 | ses-00 | task-archi_spatial_dir-ap_object_orientation| -| sub-12 | ses-00 | task-archi_spatial_dir-ap_object_grasp| -| sub-12 | ses-00 | dir-ap_object_orientation| -| sub-06 | ses-01 | task-hcp_motor_ffx_right_foot| -| sub-06 | ses-01 | dir-ffx_right_foot| -| sub-06 | ses-01 | right_foot| -| sub-15 | ses-00 | dir-pa_object_orientation| -| sub-15 | ses-00 | task-archi_spatial_dir-pa_object_orientation| -| sub-12 | ses-12 | dir-pa_run-02_sn_after-before_event| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Premotor_6d2.md b/deploy/datasets/supplements/data/ibc/left_Premotor_6d2.md deleted file mode 100644 index 9b758368d..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Premotor_6d2.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 6d2 (PreCG) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 6d2 (PreCG) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-12 | ses-04 | task-rsvp_language_dir-pa_run-00_probe| -| sub-12 | ses-04 | dir-pa_run-00_probe| -| sub-12 | ses-04 | task-rsvp_language_dir-ap_run-05_probe| -| sub-12 | ses-04 | dir-ap_run-05_probe| -| sub-12 | ses-04 | dir-pa_run-02_probe| -| sub-12 | ses-04 | task-rsvp_language_dir-pa_run-02_probe| -| sub-08 | ses-00 | dir-pa_hand-side| -| sub-08 | ses-00 | task-archi_spatial_dir-pa_hand-side| -| sub-12 | ses-00 | task-archi_spatial_ffx_object_orientation| -| sub-12 | ses-00 | object_orientation| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Premotor_6d3.md b/deploy/datasets/supplements/data/ibc/left_Premotor_6d3.md deleted file mode 100644 index ae629ea59..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Premotor_6d3.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 6d3 (SFS) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 6d3 (SFS) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-15 | ses-00 | task-archi_spatial_dir-pa_hand-side| -| sub-15 | ses-00 | dir-pa_hand-side| -| sub-05 | ses-04 | task-archi_spatial_dir-ap_hand-side| -| sub-05 | ses-04 | dir-ap_hand-side| -| sub-05 | ses-20 | task-self_dir-ap_run-04_encode_self-other| -| sub-05 | ses-20 | dir-ap_run-04_encode_self-other| -| sub-05 | ses-04 | computation-sentences| -| sub-05 | ses-04 | dir-ffx_computation-sentences| -| sub-05 | ses-04 | task-archi_standard_ffx_computation-sentences| -| sub-05 | ses-04 | task-archi_standard_dir-ap_computation-sentences| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_SPL_5Ci.md b/deploy/datasets/supplements/data/ibc/left_SPL_5Ci.md deleted file mode 100644 index 12c1dc2fd..000000000 --- a/deploy/datasets/supplements/data/ibc/left_SPL_5Ci.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 5Ci (SPL) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 5Ci (SPL) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-11 | ses-11 | task-mtt_we_dir-pa_run-02_westside-eastside_event| -| sub-11 | ses-11 | dir-pa_run-02_westside-eastside_event| -| sub-14 | ses-04 | dir-pa_run-02_complex-simple| -| sub-14 | ses-04 | task-rsvp_language_dir-pa_run-02_complex-simple| -| sub-01 | ses-15 | dir-pa_run-01_sn_all_time-space_cue| -| sub-01 | ses-15 | task-mtt_sn_dir-pa_run-01_sn_all_time-space_cue| -| sub-12 | ses-03 | task-archi_emotional_dir-ap_expression_gender-control| -| sub-12 | ses-03 | dir-ap_expression_gender-control| -| sub-08 | ses-02 | dir-pa_punishment-reward| -| sub-08 | ses-02 | task-hcp_gambling_dir-pa_punishment-reward| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_SPL_5L.md b/deploy/datasets/supplements/data/ibc/left_SPL_5L.md deleted file mode 100644 index a99abcbc8..000000000 --- a/deploy/datasets/supplements/data/ibc/left_SPL_5L.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 5L (SPL) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 5L (SPL) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-05 | ses-00 | task-archi_standard_ffx_motor-cognitive| -| sub-05 | ses-00 | task-archi_standard_dir-pa_motor-cognitive| -| sub-05 | ses-00 | motor-cognitive| -| sub-05 | ses-00 | dir-ffx_motor-cognitive| -| sub-05 | ses-00 | dir-pa_motor-cognitive| -| sub-12 | ses-11 | we_space-time_event| -| sub-06 | ses-17 | task-vstm_dir-pa_run-02_vstm_linear| -| sub-06 | ses-17 | dir-pa_run-02_vstm_linear| -| sub-02 | ses-06 | dir-ap_run-05_probe| -| sub-02 | ses-06 | task-rsvp_language_dir-ap_run-05_probe| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_SPL_5M.md b/deploy/datasets/supplements/data/ibc/left_SPL_5M.md deleted file mode 100644 index 0407df916..000000000 --- a/deploy/datasets/supplements/data/ibc/left_SPL_5M.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 5M (SPL) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 5M (SPL) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-14 | ses-11 | dir-ap_run-03_we_all_space_cue| -| sub-14 | ses-11 | task-mtt_we_dir-ap_run-03_we_all_space_cue| -| sub-05 | ses-20 | task-self_dir-pa_run-02_recognition_other_hit| -| sub-05 | ses-20 | dir-pa_run-02_recognition_other_hit| -| sub-07 | ses-23 | dir-ap_run-03_encode_self-other| -| sub-07 | ses-23 | task-self_dir-ap_run-03_encode_self-other| -| sub-04 | ses-01 | dir-pa_right_foot-avg| -| sub-04 | ses-01 | task-hcp_motor_dir-pa_right_foot-avg| -| sub-08 | ses-02 | dir-pa_punishment-reward| -| sub-08 | ses-02 | task-hcp_gambling_dir-pa_punishment-reward| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_SPL_7A.md b/deploy/datasets/supplements/data/ibc/left_SPL_7A.md deleted file mode 100644 index 2477b6490..000000000 --- a/deploy/datasets/supplements/data/ibc/left_SPL_7A.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 7A (SPL) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 7A (SPL) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-15 | ses-06 | task-preference_faces_dir-ap_face_linear| -| sub-15 | ses-06 | dir-ap_face_linear| -| sub-06 | ses-17 | task-vstm_dir-ap_run-01_vstm_constant| -| sub-06 | ses-17 | dir-ap_run-02_vstm_constant| -| sub-06 | ses-17 | vstm_constant| -| sub-06 | ses-17 | dir-ap_run-01_vstm_constant| -| sub-06 | ses-17 | task-vstm_dir-ap_run-02_vstm_constant| -| sub-11 | ses-12 | sn_space-time_event| -| sub-11 | ses-12 | task-mtt_sn_dir-pa_run-02_sn_space-time_event| -| sub-11 | ses-12 | dir-pa_run-02_sn_space-time_event| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_SPL_7M.md b/deploy/datasets/supplements/data/ibc/left_SPL_7M.md deleted file mode 100644 index a83a2ff29..000000000 --- a/deploy/datasets/supplements/data/ibc/left_SPL_7M.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 7M (SPL) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 7M (SPL) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-04 | ses-16 | task-emotional_pain_dir-ap_emotional-physical_pain| -| sub-04 | ses-16 | dir-ap_emotional-physical_pain| -| sub-12 | ses-16 | task-preference_faces_dir-ap_face_linear| -| sub-12 | ses-16 | dir-ap_face_linear| -| sub-04 | ses-15 | task-preference_food_ffx_food_quadratic| -| sub-04 | ses-15 | food_quadratic| -| sub-04 | ses-15 | dir-ffx_food_quadratic| -| sub-04 | ses-15 | task-preference_faces_dir-pa_face_quadratic| -| sub-04 | ses-15 | dir-pa_face_quadratic| -| sub-06 | ses-01 | punishment-reward| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_SPL_7P.md b/deploy/datasets/supplements/data/ibc/left_SPL_7P.md deleted file mode 100644 index 634eb9c46..000000000 --- a/deploy/datasets/supplements/data/ibc/left_SPL_7P.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 7P (SPL) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 7P (SPL) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-12 | ses-16 | task-preference_faces_dir-pa_face_linear| -| sub-12 | ses-16 | dir-pa_face_linear| -| sub-06 | ses-00 | task-archi_standard_dir-pa_computation-sentences| -| sub-06 | ses-00 | dir-ffx_computation-sentences| -| sub-06 | ses-00 | task-archi_standard_ffx_computation-sentences| -| sub-06 | ses-00 | computation-sentences| -| sub-06 | ses-00 | dir-pa_computation-sentences| -| sub-12 | ses-16 | face_linear| -| sub-12 | ses-16 | dir-ffx_face_linear| -| sub-12 | ses-16 | task-preference_faces_ffx_face_linear| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_SPL_7PC.md b/deploy/datasets/supplements/data/ibc/left_SPL_7PC.md deleted file mode 100644 index 57a068e88..000000000 --- a/deploy/datasets/supplements/data/ibc/left_SPL_7PC.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 7PC (SPL) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 7PC (SPL) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-04 | ses-17 | task-vstm_dir-pa_run-01_vstm_constant| -| sub-04 | ses-17 | dir-pa_run-01_vstm_constant| -| sub-04 | ses-15 | dir-pa_face_constant| -| sub-04 | ses-15 | task-preference_faces_dir-pa_face_constant| -| sub-04 | ses-17 | task-vstm_dir-ap_run-01_vstm_constant| -| sub-04 | ses-17 | dir-ap_run-01_vstm_constant| -| sub-14 | ses-12 | sn_space-time_event| -| sub-07 | ses-11 | dir-pa_run-01_sn_all_event_response| -| sub-07 | ses-11 | task-mtt_sn_dir-pa_run-01_sn_all_event_response| -| sub-07 | ses-11 | sn_all_event_response| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Supplementarymotor_presma.md b/deploy/datasets/supplements/data/ibc/left_Supplementarymotor_presma.md deleted file mode 100644 index 9b450e4f4..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Supplementarymotor_presma.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 6ma (preSMA, mesial SFG) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 6ma (preSMA, mesial SFG) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-23 | dir-pa_run-01_correct_rejection| -| sub-07 | ses-23 | task-self_dir-pa_run-01_correct_rejection| -| sub-04 | ses-15 | dir-ap_painting_quadratic| -| sub-04 | ses-15 | task-preference_paintings_dir-ap_painting_quadratic| -| sub-15 | ses-00 | dir-pa_computation| -| sub-15 | ses-00 | task-archi_standard_dir-pa_computation| -| sub-11 | ses-18 | dir-ap_emotional-physical_pain| -| sub-11 | ses-18 | task-emotional_pain_dir-ap_emotional-physical_pain| -| sub-15 | ses-10 | dir-ap_enumeration_linear| -| sub-15 | ses-10 | task-enumeration_dir-ap_enumeration_linear| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Supplementarymotor_sma.md b/deploy/datasets/supplements/data/ibc/left_Supplementarymotor_sma.md deleted file mode 100644 index 8d6a08020..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Supplementarymotor_sma.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 6mp (SMA, mesial SFG) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 6mp (SMA, mesial SFG) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-09 | ses-12 | task-mtt_we_dir-ap_run-03_eastside-westside_event| -| sub-09 | ses-12 | dir-ap_run-03_eastside-westside_event| -| sub-15 | ses-06 | painting_linear| -| sub-15 | ses-06 | task-preference_paintings_ffx_painting_linear| -| sub-15 | ses-06 | dir-ffx_painting_linear| -| sub-06 | ses-16 | task-emotional_pain_dir-pa_emotional-physical_pain| -| sub-06 | ses-16 | dir-pa_emotional-physical_pain| -| sub-11 | ses-19 | enumeration_constant| -| sub-11 | ses-19 | task-enumeration_ffx_enumeration_constant| -| sub-11 | ses-19 | dir-pa_enumeration_constant| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Visual_FG1.md b/deploy/datasets/supplements/data/ibc/left_Visual_FG1.md deleted file mode 100644 index e2b028be6..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Visual_FG1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area FG1 (FusG) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area FG1 (FusG) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-06 | ses-04 | expression_intention| -| sub-06 | ses-04 | dir-ap_face_trusty| -| sub-06 | ses-04 | face_gender| -| sub-06 | ses-04 | dir-ffx_face_gender| -| sub-06 | ses-04 | task-archi_emotional_ffx_face_gender| -| sub-06 | ses-04 | task-archi_emotional_dir-ap_face_trusty| -| sub-06 | ses-04 | dir-ffx_expression_intention| -| sub-06 | ses-04 | task-archi_emotional_ffx_expression_intention| -| sub-02 | ses-00 | dir-pa_object_grasp| -| sub-11 | ses-01 | dir-pa_cue| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Visual_FG2.md b/deploy/datasets/supplements/data/ibc/left_Visual_FG2.md deleted file mode 100644 index b721d4b9f..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Visual_FG2.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area FG2 (FusG) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area FG2 (FusG) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-06 | ses-00 | task-archi_spatial_dir-ap_rotation_side| -| sub-06 | ses-00 | dir-ap_rotation_side| -| sub-06 | ses-00 | dir-ffx_video_sentence| -| sub-06 | ses-00 | video_sentence| -| sub-06 | ses-00 | task-archi_standard_ffx_video_sentence| -| sub-06 | ses-00 | dir-pa_video_sentence| -| sub-06 | ses-00 | task-archi_standard_dir-pa_video_sentence| -| sub-14 | ses-01 | task-archi_emotional_ffx_expression_intention-control| -| sub-14 | ses-01 | task-archi_emotional_ffx_trusty_and_intention-control| -| sub-14 | ses-01 | trusty_and_intention-control| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Visual_FG3.md b/deploy/datasets/supplements/data/ibc/left_Visual_FG3.md deleted file mode 100644 index c8f354696..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Visual_FG3.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area FG3 (FusG) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area FG3 (FusG) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-14 | ses-11 | task-mtt_we_dir-pa_run-02_we_space-time_event| -| sub-14 | ses-11 | dir-pa_run-02_we_space-time_event| -| sub-11 | ses-01 | dir-pa_face-shape| -| sub-11 | ses-01 | task-hcp_emotion_dir-pa_face-shape| -| sub-11 | ses-01 | dir-ffx_face-shape| -| sub-11 | ses-01 | task-hcp_emotion_ffx_face-shape| -| sub-11 | ses-01 | face-shape| -| sub-12 | ses-02 | task-hcp_wm_dir-ap_tools-avg| -| sub-12 | ses-02 | dir-ap_tools-avg| -| sub-14 | ses-01 | task-archi_emotional_dir-pa_trusty_and_intention-control| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Visual_FG4.md b/deploy/datasets/supplements/data/ibc/left_Visual_FG4.md deleted file mode 100644 index c6bb5e819..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Visual_FG4.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area FG4 (FusG) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area FG4 (FusG) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-09 | ses-05 | dir-ap_expression_intention-control| -| sub-09 | ses-05 | task-archi_emotional_dir-ap_expression_intention-control| -| sub-11 | ses-05 | task-archi_emotional_ffx_expression_intention-control| -| sub-11 | ses-05 | dir-ffx_expression_intention-control| -| sub-11 | ses-05 | expression_intention-control| -| sub-06 | ses-00 | task-archi_standard_dir-ap_reading-checkerboard| -| sub-06 | ses-00 | dir-ap_reading-checkerboard| -| sub-09 | ses-01 | dir-ffx_face| -| sub-09 | ses-01 | task-hcp_emotion_ffx_face| -| sub-09 | ses-01 | face| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Visual_hOc1.md b/deploy/datasets/supplements/data/ibc/left_Visual_hOc1.md deleted file mode 100644 index b8816a61f..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Visual_hOc1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hOc1 (V1, 17, CalcS) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hOc1 (V1, 17, CalcS) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-09 | ses-04 | task-rsvp_language_dir-pa_run-00_simple| -| sub-09 | ses-04 | dir-pa_run-00_simple| -| sub-07 | ses-04 | face_gender-control| -| sub-02 | ses-01 | dir-ap_horizontal_checkerboard| -| sub-07 | ses-04 | dir-ffx_face_gender-control| -| sub-07 | ses-04 | task-archi_emotional_ffx_face_gender-control| -| sub-02 | ses-01 | task-archi_standard_dir-ap_horizontal_checkerboard| -| sub-07 | ses-04 | dir-pa_horizontal_checkerboard| -| sub-07 | ses-04 | task-archi_standard_dir-pa_horizontal_checkerboard| -| sub-13 | ses-21 | dir-pa_run-01_recognition_hit-correct_rejection| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Visual_hOc2.md b/deploy/datasets/supplements/data/ibc/left_Visual_hOc2.md deleted file mode 100644 index 98039e2f7..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Visual_hOc2.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hOc2 (V2, 18) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hOc2 (V2, 18) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-11 | ses-22 | dir-pa_run-01_recognition_self_hit| -| sub-11 | ses-22 | task-self_dir-pa_run-01_recognition_self_hit| -| sub-05 | ses-15 | food_quadratic| -| sub-05 | ses-15 | task-preference_food_ffx_food_quadratic| -| sub-05 | ses-15 | dir-ffx_food_quadratic| -| sub-11 | ses-22 | encode_other| -| sub-11 | ses-22 | recognition_hit| -| sub-11 | ses-22 | dir-ap_run-03_encode_other| -| sub-11 | ses-22 | recognition_other_hit| -| sub-11 | ses-22 | false_alarm| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Visual_hOc3d.md b/deploy/datasets/supplements/data/ibc/left_Visual_hOc3d.md deleted file mode 100644 index 1e2ce09e5..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Visual_hOc3d.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hOc3d (Cuneus) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hOc3d (Cuneus) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-04 | ses-12 | sn_all_event_response| -| sub-05 | ses-03 | task-rsvp_language_dir-ap_run-05_sentence-jabberwocky| -| sub-05 | ses-03 | dir-ap_run-05_sentence-jabberwocky| -| sub-09 | ses-05 | task-archi_spatial_dir-ap_object_orientation| -| sub-09 | ses-05 | dir-ap_object_orientation| -| sub-05 | ses-02 | task-hcp_wm_dir-ap_0back_tools| -| sub-05 | ses-02 | dir-ap_0back_tools| -| sub-12 | ses-03 | dir-pa_vertical-horizontal| -| sub-12 | ses-03 | task-archi_standard_dir-pa_vertical-horizontal| -| sub-12 | ses-03 | task-archi_standard_dir-pa_vertical_checkerboard| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Visual_hOc3v.md b/deploy/datasets/supplements/data/ibc/left_Visual_hOc3v.md deleted file mode 100644 index d9c7449b1..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Visual_hOc3v.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hOc3v (LingG) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hOc3v (LingG) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-13 | ses-04 | dir-pa_video_left_button_press| -| sub-13 | ses-04 | task-archi_standard_dir-pa_video_left_button_press| -| sub-14 | ses-21 | task-self_dir-ap_run-03_recognition_other_hit| -| sub-14 | ses-21 | dir-ap_run-03_recognition_other_hit| -| sub-14 | ses-01 | task-archi_social_dir-pa_false_belief_video| -| sub-14 | ses-01 | dir-pa_false_belief_video| -| sub-09 | ses-05 | task-archi_emotional_ffx_expression_control| -| sub-09 | ses-05 | expression_control| -| sub-09 | ses-05 | dir-ffx_expression_control| -| sub-11 | ses-05 | dir-pa_reading-listening| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Visual_hOc4d.md b/deploy/datasets/supplements/data/ibc/left_Visual_hOc4d.md deleted file mode 100644 index 2c004fe12..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Visual_hOc4d.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hOc4d (Cuneus) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hOc4d (Cuneus) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-04 | ses-01 | task-hcp_emotion_dir-pa_shape-face| -| sub-04 | ses-01 | dir-pa_shape-face| -| sub-01 | ses-20 | vstm_quadratic| -| sub-02 | ses-06 | dir-ap_run-03_complex| -| sub-02 | ses-06 | task-rsvp_language_dir-ap_run-03_complex| -| sub-12 | ses-11 | dir-ap_run-03_we_space-time_event| -| sub-12 | ses-11 | task-mtt_we_dir-ap_run-03_we_space-time_event| -| sub-15 | ses-03 | 0back-2back| -| sub-15 | ses-03 | task-hcp_wm_ffx_0back-2back| -| sub-15 | ses-03 | dir-ffx_0back-2back| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Visual_hOc4la.md b/deploy/datasets/supplements/data/ibc/left_Visual_hOc4la.md deleted file mode 100644 index 124b32313..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Visual_hOc4la.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hOc4la (LOC) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hOc4la (LOC) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-02 | dir-ap_random| -| sub-07 | ses-02 | task-hcp_social_dir-ap_mental| -| sub-07 | ses-02 | task-hcp_social_dir-ap_random| -| sub-07 | ses-02 | dir-ap_mental| -| sub-13 | ses-02 | dir-pa_body-avg| -| sub-13 | ses-02 | task-hcp_wm_dir-pa_body-avg| -| sub-09 | ses-02 | random| -| sub-09 | ses-02 | dir-ffx_random| -| sub-09 | ses-02 | task-hcp_social_ffx_random| -| sub-14 | ses-03 | task-hcp_wm_ffx_body-avg| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Visual_hOc4lp.md b/deploy/datasets/supplements/data/ibc/left_Visual_hOc4lp.md deleted file mode 100644 index 267fc223d..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Visual_hOc4lp.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hOc4lp (LOC) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hOc4lp (LOC) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-13 | ses-15 | dir-ffx_painting_linear| -| sub-13 | ses-15 | painting_linear| -| sub-13 | ses-15 | task-preference_paintings_ffx_painting_linear| -| sub-12 | ses-01 | dir-ffx_face| -| sub-12 | ses-01 | task-hcp_emotion_ffx_face| -| sub-12 | ses-01 | face| -| sub-07 | ses-02 | dir-ffx_tools-avg| -| sub-07 | ses-02 | task-hcp_wm_dir-pa_tools-avg| -| sub-07 | ses-02 | tools-avg| -| sub-07 | ses-02 | task-hcp_wm_ffx_tools-avg| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Visual_hOc4v.md b/deploy/datasets/supplements/data/ibc/left_Visual_hOc4v.md deleted file mode 100644 index cafdfc496..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Visual_hOc4v.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hOc4v (LingG) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hOc4v (LingG) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-04 | ses-04 | task-archi_emotional_dir-ap_expression_gender| -| sub-04 | ses-04 | dir-ap_expression_gender| -| sub-07 | ses-00 | task-archi_social_dir-ap_triangle_random| -| sub-07 | ses-00 | dir-ap_triangle_random| -| sub-14 | ses-04 | task-rsvp_language_dir-pa_run-00_complex-simple| -| sub-14 | ses-04 | dir-pa_run-00_complex-simple| -| sub-05 | ses-15 | dir-pa_face_constant| -| sub-05 | ses-15 | task-preference_faces_ffx_face_constant| -| sub-05 | ses-15 | dir-ffx_face_constant| -| sub-05 | ses-15 | task-preference_faces_dir-pa_face_constant| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Visual_hOc5.md b/deploy/datasets/supplements/data/ibc/left_Visual_hOc5.md deleted file mode 100644 index 65554538d..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Visual_hOc5.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hOc5 (LOC) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hOc5 (LOC) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-08 | ses-01 | task-archi_social_dir-pa_triangle_random| -| sub-08 | ses-01 | dir-pa_triangle_random| -| sub-14 | ses-00 | task-archi_spatial_ffx_grasp-orientation| -| sub-14 | ses-00 | grasp-orientation| -| sub-14 | ses-00 | dir-ffx_grasp-orientation| -| sub-08 | ses-01 | task-archi_social_dir-ap_triangle_mental| -| sub-08 | ses-01 | dir-ap_triangle_mental| -| sub-08 | ses-01 | triangle_random| -| sub-08 | ses-01 | dir-ffx_triangle_random| -| sub-08 | ses-01 | task-archi_social_ffx_triangle_random| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Visual_hOc6.md b/deploy/datasets/supplements/data/ibc/left_Visual_hOc6.md deleted file mode 100644 index 7def02d28..000000000 --- a/deploy/datasets/supplements/data/ibc/left_Visual_hOc6.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hOc6 (POS) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hOc6 (POS) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-00 | dir-pa_false_belief_video| -| sub-07 | ses-00 | task-archi_social_dir-pa_false_belief_video| -| sub-06 | ses-21 | dir-pa_talk| -| sub-06 | ses-21 | task-bang_ffx_talk| -| sub-06 | ses-21 | task-bang_dir-pa_talk| -| sub-06 | ses-21 | talk| -| sub-06 | ses-21 | dir-ffx_talk| -| sub-06 | ses-11 | task-mtt_we_dir-ap_run-03_we_all_time-space_cue| -| sub-06 | ses-11 | dir-ap_run-03_we_all_time-space_cue| -| sub-15 | ses-06 | task-preference_food_dir-ap_food_linear| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_AIPS_IP1.md b/deploy/datasets/supplements/data/ibc/right_AIPS_IP1.md deleted file mode 100644 index 20a155b00..000000000 --- a/deploy/datasets/supplements/data/ibc/right_AIPS_IP1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hIP1 (IPS) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hIP1 (IPS) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-17 | vstm_quadratic| -| sub-01 | ses-19 | task-preference_faces_dir-pa_face_linear| -| sub-01 | ses-19 | dir-pa_face_linear| -| sub-07 | ses-00 | false_belief_video| -| sub-07 | ses-00 | dir-ffx_false_belief_video| -| sub-07 | ses-00 | task-archi_social_ffx_false_belief_video| -| sub-12 | ses-11 | task-mtt_we_dir-pa_run-02_we_all_time-space_cue| -| sub-12 | ses-11 | dir-pa_run-02_we_all_time-space_cue| -| sub-08 | ses-03 | dir-ap_2back-0back| -| sub-08 | ses-03 | task-hcp_wm_dir-ap_2back-0back| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_AIPS_IP2.md b/deploy/datasets/supplements/data/ibc/right_AIPS_IP2.md deleted file mode 100644 index d13332a90..000000000 --- a/deploy/datasets/supplements/data/ibc/right_AIPS_IP2.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hIP2 (IPS) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hIP2 (IPS) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-08 | ses-02 | dir-pa_math-story| -| sub-08 | ses-02 | task-hcp_language_dir-pa_math-story| -| sub-01 | ses-03 | dir-pa_math-story| -| sub-01 | ses-03 | math-story| -| sub-01 | ses-03 | task-hcp_language_ffx_math-story| -| sub-01 | ses-03 | task-hcp_language_dir-pa_math-story| -| sub-01 | ses-03 | dir-ffx_math-story| -| sub-04 | ses-01 | task-hcp_language_dir-ap_math-story| -| sub-04 | ses-01 | dir-ap_math-story| -| sub-08 | ses-03 | dir-ap_2back-0back| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_AIPS_IP3.md b/deploy/datasets/supplements/data/ibc/right_AIPS_IP3.md deleted file mode 100644 index 259fe7700..000000000 --- a/deploy/datasets/supplements/data/ibc/right_AIPS_IP3.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hIP3 (IPS) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hIP3 (IPS) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-04 | ses-00 | task-archi_spatial_dir-ap_saccades| -| sub-04 | ses-00 | dir-ap_saccades| -| sub-04 | ses-00 | dir-pa_saccades| -| sub-04 | ses-00 | task-archi_spatial_ffx_saccades| -| sub-04 | ses-00 | dir-ffx_saccades| -| sub-04 | ses-00 | saccades| -| sub-04 | ses-00 | task-archi_spatial_dir-pa_saccades| -| sub-01 | ses-07 | task-archi_standard_dir-pa_video_computation| -| sub-01 | ses-07 | dir-pa_video_computation| -| sub-15 | ses-03 | task-hcp_wm_dir-pa_2back-0back| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Amygdala_CM.md b/deploy/datasets/supplements/data/ibc/right_Amygdala_CM.md deleted file mode 100644 index 6fc837225..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Amygdala_CM.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in CM (Amygdala) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in CM (Amygdala) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-05 | ses-17 | dir-ap_run-01_vstm_quadratic| -| sub-05 | ses-17 | task-vstm_dir-ap_run-01_vstm_quadratic| -| sub-14 | ses-11 | task-mtt_we_dir-pa_run-02_eastside-westside_event| -| sub-14 | ses-11 | dir-pa_run-02_eastside-westside_event| -| sub-11 | ses-03 | complex-simple| -| sub-01 | ses-04 | 2back_body| -| sub-12 | ses-00 | task-archi_standard_dir-ap_computation| -| sub-13 | ses-17 | dir-pa_enumeration_linear| -| sub-07 | ses-03 | task-rsvp_language_dir-ap_run-04_jabberwocky| -| sub-13 | ses-04 | task-archi_standard_ffx_sentences| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Amygdala_IF.md b/deploy/datasets/supplements/data/ibc/right_Amygdala_IF.md deleted file mode 100644 index 27a8d0854..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Amygdala_IF.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in IF (Amygdala) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in IF (Amygdala) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-05 | ses-17 | dir-ap_run-01_vstm_quadratic| -| sub-05 | ses-17 | task-vstm_dir-ap_run-01_vstm_quadratic| -| sub-01 | ses-04 | 2back_body| -| sub-12 | ses-00 | task-archi_standard_dir-ap_computation| -| sub-13 | ses-17 | dir-pa_enumeration_linear| -| sub-07 | ses-03 | task-rsvp_language_dir-ap_run-04_jabberwocky| -| sub-13 | ses-04 | task-archi_standard_ffx_sentences| -| sub-14 | ses-01 | dir-pa_non_speech_sound| -| sub-13 | ses-00 | dir-pa_right-left_button_press| -| sub-14 | ses-04 | dir-ap_run-05_word_list| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Amygdala_LB.md b/deploy/datasets/supplements/data/ibc/right_Amygdala_LB.md deleted file mode 100644 index 3c93de71c..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Amygdala_LB.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in LB (Amygdala) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in LB (Amygdala) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-00 | dir-ap_non_speech_sound| -| sub-07 | ses-00 | task-archi_social_dir-ap_non_speech_sound| -| sub-11 | ses-11 | dir-pa_run-01_we_time-space_event| -| sub-11 | ses-11 | task-mtt_we_dir-pa_run-01_we_time-space_event| -| sub-05 | ses-17 | dir-ap_run-01_vstm_quadratic| -| sub-05 | ses-17 | task-vstm_dir-ap_run-01_vstm_quadratic| -| sub-07 | ses-12 | task-mtt_we_dir-ap_run-03_we_all_time-space_cue| -| sub-07 | ses-12 | dir-ap_run-03_we_all_time-space_cue| -| sub-07 | ses-01 | dir-pa_reward-punishment| -| sub-07 | ses-01 | task-hcp_gambling_dir-pa_reward-punishment| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Amygdala_MF.md b/deploy/datasets/supplements/data/ibc/right_Amygdala_MF.md deleted file mode 100644 index 80ef94808..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Amygdala_MF.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in MF (Amygdala) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in MF (Amygdala) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-01 | dir-pa_reward-punishment| -| sub-07 | ses-01 | task-hcp_gambling_dir-pa_reward-punishment| -| sub-01 | ses-04 | 2back_body| -| sub-12 | ses-00 | task-archi_standard_dir-ap_computation| -| sub-13 | ses-17 | dir-pa_enumeration_linear| -| sub-07 | ses-03 | task-rsvp_language_dir-ap_run-04_jabberwocky| -| sub-13 | ses-04 | task-archi_standard_ffx_sentences| -| sub-14 | ses-01 | dir-pa_non_speech_sound| -| sub-13 | ses-00 | dir-pa_right-left_button_press| -| sub-14 | ses-04 | dir-ap_run-05_word_list| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Amygdala_SF.md b/deploy/datasets/supplements/data/ibc/right_Amygdala_SF.md deleted file mode 100644 index 3ddf8f7c7..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Amygdala_SF.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in SF (Amygdala) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in SF (Amygdala) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-01 | dir-pa_reward-punishment| -| sub-07 | ses-01 | task-hcp_gambling_dir-pa_reward-punishment| -| sub-05 | ses-11 | task-mtt_we_dir-pa_run-01_we_before-after_event| -| sub-05 | ses-11 | dir-pa_run-01_we_before-after_event| -| sub-11 | ses-03 | complex-simple| -| sub-01 | ses-04 | 2back_body| -| sub-12 | ses-00 | task-archi_standard_dir-ap_computation| -| sub-13 | ses-17 | dir-pa_enumeration_linear| -| sub-07 | ses-03 | task-rsvp_language_dir-ap_run-04_jabberwocky| -| sub-13 | ses-04 | task-archi_standard_ffx_sentences| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Amygdala_VTM.md b/deploy/datasets/supplements/data/ibc/right_Amygdala_VTM.md deleted file mode 100644 index b75f0832e..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Amygdala_VTM.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in VTM (Amygdala) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in VTM (Amygdala) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-01 | dir-pa_reward-punishment| -| sub-07 | ses-01 | task-hcp_gambling_dir-pa_reward-punishment| -| sub-01 | ses-04 | 2back_body| -| sub-12 | ses-00 | task-archi_standard_dir-ap_computation| -| sub-13 | ses-17 | dir-pa_enumeration_linear| -| sub-07 | ses-03 | task-rsvp_language_dir-ap_run-04_jabberwocky| -| sub-13 | ses-04 | task-archi_standard_ffx_sentences| -| sub-14 | ses-01 | dir-pa_non_speech_sound| -| sub-13 | ses-00 | dir-pa_right-left_button_press| -| sub-14 | ses-04 | dir-ap_run-05_word_list| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Auditory_Te10.md b/deploy/datasets/supplements/data/ibc/right_Auditory_Te10.md deleted file mode 100644 index b2a2de7c5..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Auditory_Te10.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area TE 1.0 (HESCHL) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area TE 1.0 (HESCHL) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-12 | ses-03 | task-archi_social_dir-ap_non_speech_sound| -| sub-12 | ses-03 | dir-ap_non_speech_sound| -| sub-02 | ses-00 | task-archi_social_dir-pa_false_belief-mechanistic_video| -| sub-02 | ses-00 | dir-pa_false_belief-mechanistic_video| -| sub-02 | ses-00 | task-archi_social_dir-ap_mechanistic_audio| -| sub-02 | ses-00 | dir-ap_mechanistic_audio| -| sub-14 | ses-00 | dir-pa_audio_left_button_press| -| sub-14 | ses-00 | task-archi_standard_dir-pa_audio_left_button_press| -| sub-02 | ses-00 | dir-ap_speech_sound| -| sub-02 | ses-00 | task-archi_social_dir-ap_speech_sound| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Auditory_Te11.md b/deploy/datasets/supplements/data/ibc/right_Auditory_Te11.md deleted file mode 100644 index c7837bfe6..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Auditory_Te11.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area TE 1.1 (HESCHL) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area TE 1.1 (HESCHL) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-02 | ses-00 | task-archi_social_dir-pa_false_belief-mechanistic_video| -| sub-02 | ses-00 | dir-pa_false_belief-mechanistic_video| -| sub-02 | ses-00 | dir-pa_listening-reading| -| sub-02 | ses-00 | task-archi_standard_dir-pa_listening-reading| -| sub-09 | ses-04 | dir-ap_run-04_jabberwocky-pseudo| -| sub-09 | ses-04 | task-rsvp_language_dir-ap_run-04_jabberwocky-pseudo| -| sub-02 | ses-00 | task-archi_social_dir-ap_mechanistic_audio| -| sub-02 | ses-00 | dir-ap_mechanistic_audio| -| sub-02 | ses-00 | dir-ap_speech_sound| -| sub-02 | ses-00 | task-archi_social_dir-ap_speech_sound| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Auditory_Te12.md b/deploy/datasets/supplements/data/ibc/right_Auditory_Te12.md deleted file mode 100644 index eee471134..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Auditory_Te12.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area TE 1.2 (HESCHL) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area TE 1.2 (HESCHL) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-01 | ses-14 | dir-ap_run-03_we_all_space-time_cue| -| sub-01 | ses-14 | task-mtt_we_dir-ap_run-03_we_all_space-time_cue| -| sub-02 | ses-05 | task-hcp_wm_ffx_0back-2back| -| sub-02 | ses-05 | dir-ffx_0back-2back| -| sub-02 | ses-05 | 0back-2back| -| sub-02 | ses-06 | dir-ap_run-04_sentence-word| -| sub-02 | ses-06 | task-rsvp_language_dir-ap_run-04_sentence-word| -| sub-07 | ses-12 | task-mtt_we_dir-ap_run-03_we_eastside_event| -| sub-07 | ses-12 | dir-ap_run-03_we_eastside_event| -| sub-07 | ses-04 | task-archi_standard_dir-ap_sentences| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Bforebrain_123.md b/deploy/datasets/supplements/data/ibc/right_Bforebrain_123.md deleted file mode 100644 index 7187e4f6e..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Bforebrain_123.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Ch 123 (Basal Forebrain) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Ch 123 (Basal Forebrain) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-08 | ses-04 | task-rsvp_language_dir-pa_run-02_complex-simple| -| sub-08 | ses-04 | dir-pa_run-02_complex-simple| -| sub-08 | ses-04 | complex-simple| -| sub-01 | ses-04 | 2back_body| -| sub-12 | ses-00 | task-archi_standard_dir-ap_computation| -| sub-13 | ses-17 | dir-pa_enumeration_linear| -| sub-07 | ses-03 | task-rsvp_language_dir-ap_run-04_jabberwocky| -| sub-13 | ses-04 | task-archi_standard_ffx_sentences| -| sub-14 | ses-01 | dir-pa_non_speech_sound| -| sub-13 | ses-00 | dir-pa_right-left_button_press| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Bforebrain_4.md b/deploy/datasets/supplements/data/ibc/right_Bforebrain_4.md deleted file mode 100644 index 570122528..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Bforebrain_4.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Ch 4 (Basal Forebrain) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Ch 4 (Basal Forebrain) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-01 | ses-04 | 2back_body| -| sub-12 | ses-00 | task-archi_standard_dir-ap_computation| -| sub-13 | ses-17 | dir-pa_enumeration_linear| -| sub-07 | ses-03 | task-rsvp_language_dir-ap_run-04_jabberwocky| -| sub-13 | ses-04 | task-archi_standard_ffx_sentences| -| sub-14 | ses-01 | dir-pa_non_speech_sound| -| sub-13 | ses-00 | dir-pa_right-left_button_press| -| sub-14 | ses-04 | dir-ap_run-05_word_list| -| sub-08 | ses-04 | task-rsvp_language_dir-pa_run-02_word_list| -| sub-06 | ses-00 | task-archi_standard_dir-ap_reading-listening| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Broca_44.md b/deploy/datasets/supplements/data/ibc/right_Broca_44.md deleted file mode 100644 index ebc550f31..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Broca_44.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 44 (IFG) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 44 (IFG) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-12 | dir-pa_run-01_we_before-after_event| -| sub-07 | ses-12 | task-mtt_we_dir-pa_run-01_we_before-after_event| -| sub-08 | ses-00 | dir-ap_motor-cognitive| -| sub-08 | ses-00 | task-archi_standard_dir-ap_motor-cognitive| -| sub-11 | ses-12 | sn_after-before_event| -| sub-08 | ses-00 | dir-ffx_motor-cognitive| -| sub-08 | ses-00 | task-archi_standard_ffx_motor-cognitive| -| sub-08 | ses-00 | motor-cognitive| -| sub-06 | ses-17 | task-vstm_dir-ap_run-02_vstm_quadratic| -| sub-06 | ses-17 | dir-ap_run-02_vstm_quadratic| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Broca_45.md b/deploy/datasets/supplements/data/ibc/right_Broca_45.md deleted file mode 100644 index 9fecd04cc..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Broca_45.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 45 (IFG) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 45 (IFG) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-14 | ses-12 | task-mtt_sn_dir-ap_run-03_sn_all_time-space_cue| -| sub-14 | ses-12 | dir-ap_run-03_sn_all_time-space_cue| -| sub-08 | ses-04 | dir-ap_run-05_complex-simple| -| sub-08 | ses-04 | task-rsvp_language_dir-ap_run-05_complex-simple| -| sub-11 | ses-03 | dir-ap_run-05_word-pseudo| -| sub-11 | ses-03 | task-rsvp_language_dir-ap_run-05_word-pseudo| -| sub-14 | ses-02 | task-hcp_motor_dir-pa_right_hand| -| sub-14 | ses-02 | dir-pa_right_hand| -| sub-02 | ses-01 | task-archi_emotional_dir-pa_trusty_and_intention-gender| -| sub-02 | ses-01 | dir-pa_trusty_and_intention-gender| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Cerebellum_Ndentd.md b/deploy/datasets/supplements/data/ibc/right_Cerebellum_Ndentd.md deleted file mode 100644 index 66022b875..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Cerebellum_Ndentd.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Dorsal Dentate Nucleus (Cerebellum) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Dorsal Dentate Nucleus (Cerebellum) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-13 | ses-16 | task-pain_movie_dir-pa_movie_mental-pain| -| sub-13 | ses-16 | dir-pa_movie_mental-pain| -| sub-12 | ses-19 | vstm_quadratic| -| sub-01 | ses-04 | 2back_body| -| sub-12 | ses-00 | task-archi_standard_dir-ap_computation| -| sub-13 | ses-17 | dir-pa_enumeration_linear| -| sub-07 | ses-03 | task-rsvp_language_dir-ap_run-04_jabberwocky| -| sub-13 | ses-04 | task-archi_standard_ffx_sentences| -| sub-14 | ses-01 | dir-pa_non_speech_sound| -| sub-13 | ses-00 | dir-pa_right-left_button_press| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Cerebellum_Ndentv.md b/deploy/datasets/supplements/data/ibc/right_Cerebellum_Ndentv.md deleted file mode 100644 index e95174e4e..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Cerebellum_Ndentv.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Ventral Dentate Nucleus (Cerebellum) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Ventral Dentate Nucleus (Cerebellum) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-01 | ses-04 | 2back_body| -| sub-12 | ses-00 | task-archi_standard_dir-ap_computation| -| sub-13 | ses-17 | dir-pa_enumeration_linear| -| sub-07 | ses-03 | task-rsvp_language_dir-ap_run-04_jabberwocky| -| sub-13 | ses-04 | task-archi_standard_ffx_sentences| -| sub-14 | ses-01 | dir-pa_non_speech_sound| -| sub-13 | ses-00 | dir-pa_right-left_button_press| -| sub-14 | ses-04 | dir-ap_run-05_word_list| -| sub-08 | ses-04 | task-rsvp_language_dir-pa_run-02_word_list| -| sub-06 | ses-00 | task-archi_standard_dir-ap_reading-listening| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Cerebellum_Nfast.md b/deploy/datasets/supplements/data/ibc/right_Cerebellum_Nfast.md deleted file mode 100644 index 12276e11d..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Cerebellum_Nfast.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Fastigial Nucleus (Cerebellum) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Fastigial Nucleus (Cerebellum) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-11 | ses-11 | we_after-before_event| -| sub-01 | ses-04 | 2back_body| -| sub-12 | ses-00 | task-archi_standard_dir-ap_computation| -| sub-13 | ses-17 | dir-pa_enumeration_linear| -| sub-07 | ses-03 | task-rsvp_language_dir-ap_run-04_jabberwocky| -| sub-13 | ses-04 | task-archi_standard_ffx_sentences| -| sub-14 | ses-01 | dir-pa_non_speech_sound| -| sub-13 | ses-00 | dir-pa_right-left_button_press| -| sub-14 | ses-04 | dir-ap_run-05_word_list| -| sub-08 | ses-04 | task-rsvp_language_dir-pa_run-02_word_list| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Cerebellum_Ninterp.md b/deploy/datasets/supplements/data/ibc/right_Cerebellum_Ninterp.md deleted file mode 100644 index 2fb3b5fd9..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Cerebellum_Ninterp.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Interposed Nucleus (Cerebellum) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Interposed Nucleus (Cerebellum) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-01 | ses-04 | 2back_body| -| sub-12 | ses-00 | task-archi_standard_dir-ap_computation| -| sub-13 | ses-17 | dir-pa_enumeration_linear| -| sub-07 | ses-03 | task-rsvp_language_dir-ap_run-04_jabberwocky| -| sub-13 | ses-04 | task-archi_standard_ffx_sentences| -| sub-14 | ses-01 | dir-pa_non_speech_sound| -| sub-13 | ses-00 | dir-pa_right-left_button_press| -| sub-14 | ses-04 | dir-ap_run-05_word_list| -| sub-08 | ses-04 | task-rsvp_language_dir-pa_run-02_word_list| -| sub-06 | ses-00 | task-archi_standard_dir-ap_reading-listening| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Cingulum_25.md b/deploy/datasets/supplements/data/ibc/right_Cingulum_25.md deleted file mode 100644 index 6e818ba98..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Cingulum_25.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 25 (sACC) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 25 (sACC) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-06 | ses-00 | dir-pa_triangle_mental-random| -| sub-06 | ses-00 | task-archi_social_dir-pa_triangle_mental-random| -| sub-08 | ses-04 | task-rsvp_language_dir-pa_run-02_complex-simple| -| sub-08 | ses-04 | dir-pa_run-02_complex-simple| -| sub-05 | ses-15 | dir-pa_house_quadratic| -| sub-05 | ses-15 | task-preference_houses_dir-pa_house_quadratic| -| sub-01 | ses-07 | dir-ap_face_trusty-control| -| sub-01 | ses-07 | task-archi_emotional_dir-ap_face_trusty-control| -| sub-01 | ses-04 | 2back_body| -| sub-12 | ses-00 | task-archi_standard_dir-ap_computation| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Cingulum_33.md b/deploy/datasets/supplements/data/ibc/right_Cingulum_33.md deleted file mode 100644 index b39a2e4f9..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Cingulum_33.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 33 (ACC) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 33 (ACC) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-01 | ses-14 | task-mtt_we_dir-ap_run-03_we_all_time-space_cue| -| sub-01 | ses-14 | dir-ap_run-03_we_all_time-space_cue| -| sub-08 | ses-04 | task-rsvp_language_dir-pa_run-02_complex-simple| -| sub-08 | ses-04 | dir-pa_run-02_complex-simple| -| sub-15 | ses-15 | sn_space-time_event| -| sub-11 | ses-12 | dir-pa_run-01_sn_space-time_event| -| sub-11 | ses-12 | task-mtt_sn_dir-pa_run-01_sn_space-time_event| -| sub-06 | ses-04 | dir-pa_face_gender-control| -| sub-06 | ses-04 | task-archi_emotional_dir-pa_face_gender-control| -| sub-13 | ses-16 | dir-pa_movie_pain| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Cingulum_p24ab.md b/deploy/datasets/supplements/data/ibc/right_Cingulum_p24ab.md deleted file mode 100644 index 3e72a34db..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Cingulum_p24ab.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area p24ab (pACC) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area p24ab (pACC) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-11 | ses-12 | dir-pa_run-01_sn_space-time_event| -| sub-11 | ses-12 | task-mtt_sn_dir-pa_run-01_sn_space-time_event| -| sub-06 | ses-11 | task-mtt_we_dir-pa_run-01_we_space-time_event| -| sub-06 | ses-11 | dir-pa_run-01_we_space-time_event| -| sub-06 | ses-04 | dir-pa_face_gender-control| -| sub-06 | ses-04 | task-archi_emotional_dir-pa_face_gender-control| -| sub-07 | ses-17 | task-enumeration_ffx_enumeration_quadratic| -| sub-07 | ses-17 | task-enumeration_dir-pa_enumeration_quadratic| -| sub-07 | ses-17 | dir-pa_enumeration_quadratic| -| sub-07 | ses-17 | dir-ffx_enumeration_quadratic| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Cingulum_p24c.md b/deploy/datasets/supplements/data/ibc/right_Cingulum_p24c.md deleted file mode 100644 index 45dcdf918..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Cingulum_p24c.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area p24c (pACC) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area p24c (pACC) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-05 | ses-16 | dir-ap_movie_mental-pain| -| sub-05 | ses-16 | task-pain_movie_dir-ap_movie_mental-pain| -| sub-07 | ses-17 | task-enumeration_ffx_enumeration_quadratic| -| sub-07 | ses-17 | task-enumeration_dir-pa_enumeration_quadratic| -| sub-07 | ses-17 | dir-pa_enumeration_quadratic| -| sub-07 | ses-17 | dir-ffx_enumeration_quadratic| -| sub-07 | ses-17 | enumeration_quadratic| -| sub-09 | ses-13 | dir-pa_run-01_sn_space-time_event| -| sub-09 | ses-13 | task-mtt_sn_dir-pa_run-01_sn_space-time_event| -| sub-06 | ses-11 | task-mtt_we_dir-pa_run-01_we_space-time_event| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Cingulum_p32.md b/deploy/datasets/supplements/data/ibc/right_Cingulum_p32.md deleted file mode 100644 index 188354442..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Cingulum_p32.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area p32 (pACC) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area p32 (pACC) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-01 | ses-19 | task-preference_faces_dir-pa_face_quadratic| -| sub-01 | ses-19 | dir-pa_face_quadratic| -| sub-06 | ses-16 | dir-ffx_movie_mental-pain| -| sub-06 | ses-16 | task-pain_movie_ffx_movie_mental-pain| -| sub-06 | ses-16 | task-pain_movie_dir-pa_movie_mental-pain| -| sub-06 | ses-16 | movie_mental-pain| -| sub-06 | ses-16 | dir-pa_movie_mental-pain| -| sub-05 | ses-11 | task-mtt_we_dir-ap_run-03_we_all_time-space_cue| -| sub-05 | ses-11 | dir-ap_run-03_we_all_time-space_cue| -| sub-13 | ses-16 | dir-ap_movie_mental-pain| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Cingulum_s24.md b/deploy/datasets/supplements/data/ibc/right_Cingulum_s24.md deleted file mode 100644 index f86e95b31..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Cingulum_s24.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area s24 (sACC) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area s24 (sACC) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-01 | ses-07 | dir-ap_face_trusty-control| -| sub-01 | ses-07 | task-archi_emotional_dir-ap_face_trusty-control| -| sub-15 | ses-02 | dir-pa_punishment-reward| -| sub-15 | ses-02 | task-hcp_gambling_dir-pa_punishment-reward| -| sub-09 | ses-02 | task-hcp_wm_dir-pa_0back-2back| -| sub-09 | ses-02 | dir-pa_0back-2back| -| sub-14 | ses-01 | task-archi_social_dir-ap_triangle_mental-random| -| sub-14 | ses-01 | dir-ap_triangle_mental-random| -| sub-11 | ses-12 | dir-pa_run-01_sn_space-time_event| -| sub-11 | ses-12 | task-mtt_sn_dir-pa_run-01_sn_space-time_event| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Cingulum_s32.md b/deploy/datasets/supplements/data/ibc/right_Cingulum_s32.md deleted file mode 100644 index d334aeec0..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Cingulum_s32.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area s32 (sACC) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area s32 (sACC) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-11 | ses-05 | task-archi_standard_dir-pa_cognitive-motor| -| sub-11 | ses-05 | dir-pa_cognitive-motor| -| sub-07 | ses-15 | task-preference_houses_dir-ap_house_linear| -| sub-07 | ses-15 | dir-ap_house_linear| -| sub-14 | ses-01 | task-archi_social_dir-ap_triangle_mental-random| -| sub-14 | ses-01 | dir-ap_triangle_mental-random| -| sub-07 | ses-12 | task-mtt_we_dir-pa_run-02_we_after-before_event| -| sub-07 | ses-12 | dir-pa_run-02_we_after-before_event| -| sub-13 | ses-03 | dir-ap_run-03_complex-simple| -| sub-13 | ses-03 | task-rsvp_language_dir-ap_run-03_complex-simple| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_FrontalPole_Fp1.md b/deploy/datasets/supplements/data/ibc/right_FrontalPole_Fp1.md deleted file mode 100644 index 38b7da57b..000000000 --- a/deploy/datasets/supplements/data/ibc/right_FrontalPole_Fp1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area Fp1 (FPole) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area Fp1 (FPole) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-12 | ses-12 | dir-pa_run-02_sn_space-time_event| -| sub-12 | ses-12 | task-mtt_sn_dir-pa_run-02_sn_space-time_event| -| sub-14 | ses-21 | dir-pa_run-01_recognition_self-other| -| sub-14 | ses-21 | task-self_dir-pa_run-01_recognition_self-other| -| sub-14 | ses-21 | recognition_self-other| -| sub-11 | ses-03 | task-rsvp_language_dir-pa_run-01_word-pseudo| -| sub-11 | ses-03 | dir-pa_run-01_word-pseudo| -| sub-05 | ses-03 | task-rsvp_language_dir-pa_run-02_complex| -| sub-05 | ses-03 | task-rsvp_language_dir-pa_run-02_word_list| -| sub-05 | ses-03 | task-rsvp_language_dir-pa_run-02_simple| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_FrontalPole_Fp2.md b/deploy/datasets/supplements/data/ibc/right_FrontalPole_Fp2.md deleted file mode 100644 index 022f579df..000000000 --- a/deploy/datasets/supplements/data/ibc/right_FrontalPole_Fp2.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area Fp2 (FPole) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area Fp2 (FPole) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-12 | ses-03 | dir-pa_face_trusty-control| -| sub-12 | ses-03 | task-archi_emotional_dir-pa_face_trusty-control| -| sub-14 | ses-16 | dir-ap_movie_mental-pain| -| sub-14 | ses-16 | task-pain_movie_dir-ap_movie_mental-pain| -| sub-13 | ses-11 | dir-pa_run-02_we_before-after_event| -| sub-13 | ses-11 | task-mtt_we_dir-pa_run-02_we_before-after_event| -| sub-02 | ses-04 | dir-ap_tongue| -| sub-02 | ses-04 | task-hcp_motor_dir-ap_tongue| -| sub-05 | ses-12 | dir-pa_run-02_sn_all_time_cue| -| sub-05 | ses-12 | task-mtt_sn_dir-pa_run-02_sn_all_time_cue| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Hippocampus_DG.md b/deploy/datasets/supplements/data/ibc/right_Hippocampus_DG.md deleted file mode 100644 index e17ccbfcc..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Hippocampus_DG.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in DG (Hippocampus) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in DG (Hippocampus) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-12 | ses-04 | dir-ap_run-03_jabberwocky-pseudo| -| sub-12 | ses-04 | task-rsvp_language_dir-ap_run-03_jabberwocky-pseudo| -| sub-12 | ses-00 | task-archi_standard_ffx_computation-sentences| -| sub-12 | ses-00 | dir-ffx_computation-sentences| -| sub-12 | ses-00 | computation-sentences| -| sub-13 | ses-11 | dir-ap_run-03_we_all_time-space_cue| -| sub-13 | ses-11 | task-mtt_we_dir-ap_run-03_we_all_time-space_cue| -| sub-15 | ses-06 | dir-ffx_food_quadratic| -| sub-15 | ses-06 | food_quadratic| -| sub-15 | ses-06 | task-preference_food_ffx_food_quadratic| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Hippocampus_HATA.md b/deploy/datasets/supplements/data/ibc/right_Hippocampus_HATA.md deleted file mode 100644 index f0a9ce693..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Hippocampus_HATA.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in HATA (Hippocampus) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in HATA (Hippocampus) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-01 | dir-pa_reward-punishment| -| sub-07 | ses-01 | task-hcp_gambling_dir-pa_reward-punishment| -| sub-05 | ses-11 | task-mtt_we_dir-pa_run-01_we_before-after_event| -| sub-05 | ses-11 | dir-pa_run-01_we_before-after_event| -| sub-01 | ses-04 | 2back_body| -| sub-12 | ses-00 | task-archi_standard_dir-ap_computation| -| sub-13 | ses-17 | dir-pa_enumeration_linear| -| sub-07 | ses-03 | task-rsvp_language_dir-ap_run-04_jabberwocky| -| sub-13 | ses-04 | task-archi_standard_ffx_sentences| -| sub-14 | ses-01 | dir-pa_non_speech_sound| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Hippocampus_Subc.md b/deploy/datasets/supplements/data/ibc/right_Hippocampus_Subc.md deleted file mode 100644 index ecc4f1f45..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Hippocampus_Subc.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Subiculum (Hippocampus) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Subiculum (Hippocampus) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-12 | task-mtt_we_dir-ap_run-03_we_all_time-space_cue| -| sub-07 | ses-12 | dir-ap_run-03_we_all_time-space_cue| -| sub-05 | ses-11 | task-mtt_we_dir-pa_run-01_we_before-after_event| -| sub-05 | ses-11 | dir-pa_run-01_we_before-after_event| -| sub-15 | ses-04 | task-rsvp_language_dir-pa_run-01_sentence-word| -| sub-15 | ses-04 | dir-pa_run-01_sentence-word| -| sub-12 | ses-00 | task-archi_standard_ffx_computation-sentences| -| sub-12 | ses-00 | dir-ffx_computation-sentences| -| sub-12 | ses-00 | computation-sentences| -| sub-11 | ses-11 | dir-pa_run-02_eastside-westside_event| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_IPL_PF.md b/deploy/datasets/supplements/data/ibc/right_IPL_PF.md deleted file mode 100644 index bffaa29aa..000000000 --- a/deploy/datasets/supplements/data/ibc/right_IPL_PF.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area PF (IPL) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area PF (IPL) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-04 | ses-12 | task-mtt_sn_dir-pa_run-01_sn_all_event_response| -| sub-04 | ses-12 | dir-pa_run-01_sn_all_event_response| -| sub-12 | ses-00 | dir-pa_sentences-computation| -| sub-12 | ses-00 | task-archi_standard_dir-pa_sentences-computation| -| sub-15 | ses-01 | task-archi_social_dir-pa_speech-non_speech| -| sub-15 | ses-01 | dir-pa_speech-non_speech| -| sub-04 | ses-11 | we_all_event_response| -| sub-04 | ses-01 | task-hcp_language_ffx_math-story| -| sub-04 | ses-01 | math-story| -| sub-04 | ses-01 | dir-ffx_math-story| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_IPL_PFcm.md b/deploy/datasets/supplements/data/ibc/right_IPL_PFcm.md deleted file mode 100644 index fce15cfba..000000000 --- a/deploy/datasets/supplements/data/ibc/right_IPL_PFcm.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area PFcm (IPL) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area PFcm (IPL) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-06 | ses-01 | dir-ap_reward-punishment| -| sub-06 | ses-01 | task-hcp_gambling_dir-ap_reward-punishment| -| sub-09 | ses-04 | dir-ap_run-05_probe| -| sub-09 | ses-04 | task-rsvp_language_dir-ap_run-05_probe| -| sub-08 | ses-11 | dir-pa_run-01_we_after-before_event| -| sub-08 | ses-11 | task-mtt_we_dir-pa_run-01_we_after-before_event| -| sub-15 | ses-06 | task-preference_food_dir-pa_food_linear| -| sub-15 | ses-06 | dir-pa_food_linear| -| sub-13 | ses-03 | dir-ap_run-05_jabberwocky-pseudo| -| sub-13 | ses-03 | task-rsvp_language_dir-ap_run-05_jabberwocky-pseudo| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_IPL_PFm.md b/deploy/datasets/supplements/data/ibc/right_IPL_PFm.md deleted file mode 100644 index 3a5181ede..000000000 --- a/deploy/datasets/supplements/data/ibc/right_IPL_PFm.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area PFm (IPL) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area PFm (IPL) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-00 | dir-ffx_false_belief-mechanistic| -| sub-07 | ses-00 | false_belief-mechanistic| -| sub-07 | ses-00 | task-archi_social_ffx_false_belief-mechanistic| -| sub-07 | ses-00 | task-archi_social_dir-ap_false_belief-mechanistic| -| sub-07 | ses-00 | dir-ap_false_belief-mechanistic| -| sub-13 | ses-16 | task-emotional_pain_dir-pa_emotional-physical_pain| -| sub-13 | ses-16 | dir-pa_emotional-physical_pain| -| sub-12 | ses-11 | dir-pa_run-02_we_time-space_event| -| sub-12 | ses-11 | task-mtt_we_dir-pa_run-02_we_time-space_event| -| sub-08 | ses-01 | task-archi_spatial_dir-pa_hand-side| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_IPL_PFop.md b/deploy/datasets/supplements/data/ibc/right_IPL_PFop.md deleted file mode 100644 index 8129284f3..000000000 --- a/deploy/datasets/supplements/data/ibc/right_IPL_PFop.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area PFop (IPL) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area PFop (IPL) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-11 | ses-11 | we_all_time-space_cue| -| sub-02 | ses-06 | dir-ap_run-04_jabberwocky-pseudo| -| sub-02 | ses-06 | task-rsvp_language_dir-ap_run-04_jabberwocky-pseudo| -| sub-02 | ses-01 | task-archi_standard_dir-pa_motor-cognitive| -| sub-02 | ses-01 | dir-pa_motor-cognitive| -| sub-11 | ses-11 | task-mtt_we_dir-pa_run-01_westside-eastside_event| -| sub-11 | ses-11 | dir-pa_run-01_westside-eastside_event| -| sub-13 | ses-01 | dir-pa_tongue| -| sub-13 | ses-01 | task-hcp_motor_dir-pa_tongue| -| sub-13 | ses-01 | dir-ffx_tongue| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_IPL_PFt.md b/deploy/datasets/supplements/data/ibc/right_IPL_PFt.md deleted file mode 100644 index d6824ec79..000000000 --- a/deploy/datasets/supplements/data/ibc/right_IPL_PFt.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area PFt (IPL) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area PFt (IPL) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-04 | task-archi_spatial_dir-pa_hand-side| -| sub-07 | ses-04 | dir-pa_hand-side| -| sub-11 | ses-11 | task-mtt_we_dir-pa_run-01_westside-eastside_event| -| sub-11 | ses-11 | dir-pa_run-01_westside-eastside_event| -| sub-02 | ses-04 | dir-pa_math-story| -| sub-02 | ses-04 | task-hcp_language_dir-pa_math-story| -| sub-04 | ses-01 | task-hcp_language_ffx_math-story| -| sub-04 | ses-01 | math-story| -| sub-04 | ses-01 | dir-ffx_math-story| -| sub-02 | ses-00 | dir-pa_motor-cognitive| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_IPL_PGa.md b/deploy/datasets/supplements/data/ibc/right_IPL_PGa.md deleted file mode 100644 index 6b8d576e6..000000000 --- a/deploy/datasets/supplements/data/ibc/right_IPL_PGa.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area PGa (IPL) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area PGa (IPL) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-09 | ses-17 | task-theory_of_mind_ffx_belief-photo| -| sub-09 | ses-17 | belief-photo| -| sub-09 | ses-17 | dir-ffx_belief-photo| -| sub-01 | ses-24 | recognition_self-other| -| sub-09 | ses-17 | dir-ap_belief-photo| -| sub-09 | ses-17 | task-theory_of_mind_dir-ap_belief-photo| -| sub-05 | ses-16 | task-theory_of_mind_dir-ap_belief-photo| -| sub-05 | ses-16 | dir-ap_belief-photo| -| sub-08 | ses-01 | task-archi_social_dir-pa_speech-non_speech| -| sub-08 | ses-01 | dir-pa_speech-non_speech| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_IPL_PGp.md b/deploy/datasets/supplements/data/ibc/right_IPL_PGp.md deleted file mode 100644 index 1209c28c6..000000000 --- a/deploy/datasets/supplements/data/ibc/right_IPL_PGp.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area PGp (IPL) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area PGp (IPL) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-09 | ses-17 | dir-ffx_movie_mental-pain| -| sub-09 | ses-17 | movie_mental-pain| -| sub-09 | ses-17 | task-pain_movie_ffx_movie_mental-pain| -| sub-09 | ses-17 | task-pain_movie_dir-ap_movie_mental-pain| -| sub-09 | ses-17 | dir-ap_movie_mental-pain| -| sub-02 | ses-01 | task-archi_emotional_dir-pa_face_trusty-control| -| sub-02 | ses-01 | dir-pa_face_trusty-control| -| sub-09 | ses-00 | task-archi_standard_ffx_cognitive-motor| -| sub-09 | ses-00 | dir-pa_cognitive-motor| -| sub-09 | ses-00 | cognitive-motor| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Insula_Id1.md b/deploy/datasets/supplements/data/ibc/right_Insula_Id1.md deleted file mode 100644 index f47fe0768..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Insula_Id1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area Id1 (Insula) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area Id1 (Insula) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-05 | ses-00 | task-archi_standard_dir-pa_sentences-computation| -| sub-05 | ses-00 | dir-pa_sentences-computation| -| sub-15 | ses-06 | task-preference_houses_ffx_house_quadratic| -| sub-15 | ses-06 | house_quadratic| -| sub-15 | ses-06 | dir-ffx_house_quadratic| -| sub-15 | ses-06 | task-preference_houses_dir-pa_house_quadratic| -| sub-15 | ses-06 | dir-pa_house_quadratic| -| sub-08 | ses-04 | task-rsvp_language_dir-ap_run-04_sentence-jabberwocky| -| sub-08 | ses-04 | dir-ap_run-04_sentence-jabberwocky| -| sub-02 | ses-06 | task-rsvp_language_dir-ap_run-03_jabberwocky-pseudo| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Insula_Id7.md b/deploy/datasets/supplements/data/ibc/right_Insula_Id7.md deleted file mode 100644 index a5977e2af..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Insula_Id7.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area Id7 (Insula) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area Id7 (Insula) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-02 | ses-01 | task-archi_social_dir-ap_triangle_mental-random| -| sub-02 | ses-01 | dir-ap_triangle_mental-random| -| sub-09 | ses-13 | dir-pa_run-02_sn_all_time-space_cue| -| sub-09 | ses-13 | task-mtt_sn_dir-pa_run-02_sn_all_time-space_cue| -| sub-02 | ses-00 | false_belief-mechanistic| -| sub-02 | ses-00 | task-archi_social_ffx_false_belief-mechanistic| -| sub-02 | ses-00 | dir-ffx_false_belief-mechanistic| -| sub-15 | ses-01 | task-archi_emotional_dir-ap_face_trusty-gender| -| sub-15 | ses-01 | dir-ap_face_trusty-gender| -| sub-07 | ses-17 | task-vstm_dir-ap_run-02_vstm_quadratic| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Insula_Ig1.md b/deploy/datasets/supplements/data/ibc/right_Insula_Ig1.md deleted file mode 100644 index f49f7ffd5..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Insula_Ig1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area Ig1 (Insula) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area Ig1 (Insula) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-09 | ses-05 | speech-non_speech| -| sub-09 | ses-05 | task-archi_social_ffx_speech-non_speech| -| sub-09 | ses-05 | dir-ffx_speech-non_speech| -| sub-09 | ses-05 | dir-pa_speech-non_speech| -| sub-09 | ses-05 | task-archi_social_dir-pa_speech-non_speech| -| sub-02 | ses-00 | task-archi_social_dir-pa_false_belief-mechanistic_video| -| sub-02 | ses-00 | dir-pa_false_belief-mechanistic_video| -| sub-07 | ses-00 | dir-pa_triangle_mental-random| -| sub-07 | ses-00 | task-archi_social_dir-pa_triangle_mental-random| -| sub-01 | ses-04 | 2back_body| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Insula_Ig2.md b/deploy/datasets/supplements/data/ibc/right_Insula_Ig2.md deleted file mode 100644 index 1aae26e69..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Insula_Ig2.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area Ig2 (Insula) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area Ig2 (Insula) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-02 | ses-00 | task-archi_social_dir-pa_false_belief-mechanistic_video| -| sub-02 | ses-00 | dir-pa_false_belief-mechanistic_video| -| sub-09 | ses-05 | speech-non_speech| -| sub-09 | ses-05 | task-archi_social_ffx_speech-non_speech| -| sub-09 | ses-05 | dir-ffx_speech-non_speech| -| sub-09 | ses-05 | dir-pa_speech-non_speech| -| sub-09 | ses-05 | task-archi_social_dir-pa_speech-non_speech| -| sub-01 | ses-04 | 2back_body| -| sub-12 | ses-00 | task-archi_standard_dir-ap_computation| -| sub-13 | ses-17 | dir-pa_enumeration_linear| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Motor_4a.md b/deploy/datasets/supplements/data/ibc/right_Motor_4a.md deleted file mode 100644 index 83b350de1..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Motor_4a.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 4a (PreCG) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 4a (PreCG) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-14 | ses-04 | task-rsvp_language_dir-ap_run-03_jabberwocky-consonant_string| -| sub-14 | ses-04 | dir-ap_run-03_jabberwocky-consonant_string| -| sub-13 | ses-01 | task-hcp_motor_dir-pa_left_foot-avg| -| sub-13 | ses-01 | dir-pa_left_foot-avg| -| sub-13 | ses-01 | task-hcp_motor_ffx_left_foot-avg| -| sub-13 | ses-01 | left_foot-avg| -| sub-13 | ses-01 | dir-ffx_left_foot-avg| -| sub-08 | ses-02 | dir-ap_left_foot| -| sub-08 | ses-02 | task-hcp_motor_dir-ap_left_foot| -| sub-04 | ses-01 | dir-ap_left_foot-avg| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Motor_4p.md b/deploy/datasets/supplements/data/ibc/right_Motor_4p.md deleted file mode 100644 index 26d26b1f0..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Motor_4p.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 4p (PreCG) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 4p (PreCG) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-02 | ses-01 | task-archi_standard_dir-ap_left-right_button_press| -| sub-02 | ses-01 | dir-ap_left-right_button_press| -| sub-02 | ses-01 | task-archi_standard_ffx_video_left_button_press| -| sub-02 | ses-01 | video_left_button_press| -| sub-02 | ses-01 | dir-ffx_video_left_button_press| -| sub-14 | ses-02 | task-hcp_motor_dir-ap_left_hand-avg| -| sub-14 | ses-02 | dir-ap_left_hand-avg| -| sub-13 | ses-03 | dir-ap_run-04_sentence-word| -| sub-13 | ses-03 | task-rsvp_language_dir-ap_run-04_sentence-word| -| sub-13 | ses-00 | dir-pa_left-right_button_press| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_OFC_Fo1.md b/deploy/datasets/supplements/data/ibc/right_OFC_Fo1.md deleted file mode 100644 index 212904f61..000000000 --- a/deploy/datasets/supplements/data/ibc/right_OFC_Fo1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area Fo1 (OFC) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area Fo1 (OFC) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-04 | ses-03 | task-rsvp_language_dir-pa_run-01_complex-simple| -| sub-04 | ses-03 | dir-pa_run-01_complex-simple| -| sub-08 | ses-00 | task-archi_social_ffx_false_belief-mechanistic_audio| -| sub-08 | ses-00 | false_belief-mechanistic_audio| -| sub-08 | ses-00 | dir-ffx_false_belief-mechanistic_audio| -| sub-12 | ses-02 | dir-ap_match| -| sub-12 | ses-02 | task-hcp_relational_dir-ap_match| -| sub-12 | ses-03 | dir-ffx_false_belief-mechanistic_video| -| sub-12 | ses-03 | task-archi_social_ffx_false_belief-mechanistic_video| -| sub-12 | ses-03 | false_belief-mechanistic_video| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_OFC_Fo2.md b/deploy/datasets/supplements/data/ibc/right_OFC_Fo2.md deleted file mode 100644 index 8880c99f4..000000000 --- a/deploy/datasets/supplements/data/ibc/right_OFC_Fo2.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area Fo2 (OFC) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area Fo2 (OFC) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-09 | ses-18 | enumeration_quadratic| -| sub-09 | ses-18 | task-enumeration_dir-ap_enumeration_quadratic| -| sub-09 | ses-18 | dir-ffx_enumeration_quadratic| -| sub-09 | ses-18 | dir-ap_enumeration_quadratic| -| sub-09 | ses-18 | task-enumeration_ffx_enumeration_quadratic| -| sub-07 | ses-11 | task-mtt_sn_dir-ap_run-03_sn_all_event_response| -| sub-07 | ses-11 | dir-ap_run-03_sn_all_event_response| -| sub-01 | ses-05 | task-rsvp_language_dir-pa_run-02_complex-simple| -| sub-01 | ses-05 | dir-pa_run-02_complex-simple| -| sub-06 | ses-00 | dir-pa_triangle_mental-random| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_OFC_Fo3.md b/deploy/datasets/supplements/data/ibc/right_OFC_Fo3.md deleted file mode 100644 index 60df74031..000000000 --- a/deploy/datasets/supplements/data/ibc/right_OFC_Fo3.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area Fo3 (OFC) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area Fo3 (OFC) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-14 | ses-02 | dir-ap_shape-face| -| sub-14 | ses-02 | task-hcp_emotion_dir-ap_shape-face| -| sub-06 | ses-04 | dir-ap_computation-sentences| -| sub-06 | ses-04 | task-archi_standard_dir-ap_computation-sentences| -| sub-06 | ses-02 | task-hcp_wm_dir-pa_2back_tools| -| sub-06 | ses-02 | dir-pa_2back_tools| -| sub-07 | ses-11 | dir-ap_run-03_sn_all_time-space_cue| -| sub-07 | ses-11 | task-mtt_sn_dir-ap_run-03_sn_all_time-space_cue| -| sub-04 | ses-12 | dir-pa_run-01_sn_time-space_event| -| sub-04 | ses-12 | task-mtt_sn_dir-pa_run-01_sn_time-space_event| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Operculum_OP1.md b/deploy/datasets/supplements/data/ibc/right_Operculum_OP1.md deleted file mode 100644 index 228472401..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Operculum_OP1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area OP1 (POperc) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area OP1 (POperc) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-06 | ses-04 | dir-ap_horizontal_checkerboard| -| sub-06 | ses-04 | task-archi_standard_dir-ap_horizontal_checkerboard| -| sub-01 | ses-15 | task-mtt_sn_dir-pa_run-01_southside-northside_event| -| sub-01 | ses-15 | dir-pa_run-01_southside-northside_event| -| sub-14 | ses-03 | dir-ap_mental-random| -| sub-14 | ses-03 | task-hcp_social_dir-ap_mental-random| -| sub-14 | ses-04 | dir-pa_run-02_probe| -| sub-14 | ses-04 | task-rsvp_language_dir-pa_run-02_probe| -| sub-01 | ses-07 | task-archi_standard_dir-pa_audio_left_button_press| -| sub-01 | ses-07 | dir-ffx_audio_left_button_press| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Operculum_OP2.md b/deploy/datasets/supplements/data/ibc/right_Operculum_OP2.md deleted file mode 100644 index c13bc2c22..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Operculum_OP2.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area OP2 (POperc) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area OP2 (POperc) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-00 | dir-pa_triangle_mental-random| -| sub-07 | ses-00 | task-archi_social_dir-pa_triangle_mental-random| -| sub-09 | ses-05 | speech-non_speech| -| sub-09 | ses-05 | task-archi_social_ffx_speech-non_speech| -| sub-09 | ses-05 | dir-ffx_speech-non_speech| -| sub-09 | ses-05 | dir-pa_speech-non_speech| -| sub-09 | ses-05 | task-archi_social_dir-pa_speech-non_speech| -| sub-11 | ses-16 | dir-ap_face_linear| -| sub-11 | ses-16 | task-preference_faces_dir-ap_face_linear| -| sub-01 | ses-05 | task-rsvp_language_dir-ap_run-04_jabberwocky-pseudo| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Operculum_OP3.md b/deploy/datasets/supplements/data/ibc/right_Operculum_OP3.md deleted file mode 100644 index cd0facda7..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Operculum_OP3.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area OP3 (POperc) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area OP3 (POperc) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-01 | ses-05 | task-rsvp_language_dir-ap_run-04_jabberwocky-pseudo| -| sub-01 | ses-05 | dir-ap_run-04_jabberwocky-pseudo| -| sub-11 | ses-16 | dir-ap_face_linear| -| sub-11 | ses-16 | task-preference_faces_dir-ap_face_linear| -| sub-06 | ses-00 | dir-ap_speech-non_speech| -| sub-06 | ses-00 | task-archi_social_dir-ap_speech-non_speech| -| sub-09 | ses-13 | dir-pa_run-02_sn_before-after_event| -| sub-09 | ses-13 | task-mtt_sn_dir-pa_run-02_sn_before-after_event| -| sub-06 | ses-11 | task-mtt_we_dir-ap_run-03_westside-eastside_event| -| sub-06 | ses-11 | dir-ap_run-03_westside-eastside_event| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Operculum_OP4.md b/deploy/datasets/supplements/data/ibc/right_Operculum_OP4.md deleted file mode 100644 index 982242396..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Operculum_OP4.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area OP4 (POperc) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area OP4 (POperc) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-11 | ses-11 | task-mtt_we_dir-ap_run-03_we_space_event| -| sub-11 | ses-11 | dir-ap_run-03_we_space_event| -| sub-06 | ses-00 | dir-pa_false_belief-mechanistic_audio| -| sub-11 | ses-11 | dir-pa_run-02_we_average_reference| -| sub-06 | ses-00 | task-archi_social_dir-pa_false_belief-mechanistic_audio| -| sub-11 | ses-11 | task-mtt_we_dir-pa_run-02_we_average_reference| -| sub-11 | ses-05 | task-archi_social_dir-ap_false_belief_audio| -| sub-11 | ses-05 | dir-ap_false_belief_audio| -| sub-06 | ses-02 | dir-pa_0back_place| -| sub-06 | ses-02 | task-hcp_wm_dir-pa_0back_place| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_PIPS_hIP4.md b/deploy/datasets/supplements/data/ibc/right_PIPS_hIP4.md deleted file mode 100644 index 9e547f62c..000000000 --- a/deploy/datasets/supplements/data/ibc/right_PIPS_hIP4.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hIP4 (IPS) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hIP4 (IPS) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-08 | ses-03 | task-hcp_wm_ffx_place-avg| -| sub-08 | ses-03 | place-avg| -| sub-08 | ses-03 | task-hcp_wm_dir-ap_place-avg| -| sub-08 | ses-03 | dir-ffx_place-avg| -| sub-08 | ses-03 | dir-ap_place-avg| -| sub-05 | ses-02 | task-hcp_wm_dir-ap_0back-2back| -| sub-05 | ses-02 | dir-ap_0back-2back| -| sub-06 | ses-04 | task-archi_social_dir-ap_triangle_mental| -| sub-06 | ses-04 | dir-ap_triangle_mental| -| sub-12 | ses-02 | dir-pa_place-avg| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_PIPS_hIP5.md b/deploy/datasets/supplements/data/ibc/right_PIPS_hIP5.md deleted file mode 100644 index 3f2564f61..000000000 --- a/deploy/datasets/supplements/data/ibc/right_PIPS_hIP5.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hIP5 (IPS) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hIP5 (IPS) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-05 | ses-12 | task-mtt_sn_dir-pa_run-02_sn_time-space_event| -| sub-05 | ses-12 | dir-pa_run-02_sn_time-space_event| -| sub-09 | ses-05 | task-archi_standard_ffx_video_computation| -| sub-09 | ses-05 | dir-ffx_video_computation| -| sub-09 | ses-05 | video_computation| -| sub-14 | ses-12 | dir-pa_run-01_sn_after-before_event| -| sub-14 | ses-12 | task-mtt_sn_dir-pa_run-01_sn_after-before_event| -| sub-05 | ses-12 | sn_time-space_event| -| sub-09 | ses-05 | task-archi_standard_dir-ap_video_computation| -| sub-09 | ses-05 | dir-ap_video_computation| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_PIPS_hIP6.md b/deploy/datasets/supplements/data/ibc/right_PIPS_hIP6.md deleted file mode 100644 index b2242cabc..000000000 --- a/deploy/datasets/supplements/data/ibc/right_PIPS_hIP6.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hIP6 (IPS) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hIP6 (IPS) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-01 | ses-00 | task-archi_social_ffx_false_belief-mechanistic_video| -| sub-01 | ses-00 | dir-ffx_false_belief-mechanistic_video| -| sub-01 | ses-00 | false_belief-mechanistic_video| -| sub-09 | ses-01 | math-story| -| sub-09 | ses-01 | task-hcp_language_ffx_math-story| -| sub-09 | ses-01 | dir-ffx_math-story| -| sub-08 | ses-00 | task-archi_standard_dir-ap_computation| -| sub-08 | ses-00 | dir-ap_computation| -| sub-08 | ses-11 | dir-pa_run-02_we_all_event_response| -| sub-08 | ses-11 | task-mtt_we_dir-pa_run-02_we_all_event_response| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_PIPS_hIP7.md b/deploy/datasets/supplements/data/ibc/right_PIPS_hIP7.md deleted file mode 100644 index 3f4d37aa4..000000000 --- a/deploy/datasets/supplements/data/ibc/right_PIPS_hIP7.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hIP7 (IPS) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hIP7 (IPS) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-02 | ses-01 | dir-pa_triangle_random| -| sub-02 | ses-01 | task-archi_social_dir-pa_triangle_random| -| sub-02 | ses-01 | dir-ap_hand-side| -| sub-02 | ses-01 | task-archi_spatial_dir-ap_hand-side| -| sub-01 | ses-07 | dir-pa_cognitive-motor| -| sub-01 | ses-07 | task-archi_standard_dir-pa_cognitive-motor| -| sub-01 | ses-07 | dir-ffx_cognitive-motor| -| sub-01 | ses-07 | task-archi_standard_ffx_cognitive-motor| -| sub-01 | ses-07 | cognitive-motor| -| sub-12 | ses-16 | dir-ap_house_linear| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_PIPS_hIP8.md b/deploy/datasets/supplements/data/ibc/right_PIPS_hIP8.md deleted file mode 100644 index 5bd0d8ae6..000000000 --- a/deploy/datasets/supplements/data/ibc/right_PIPS_hIP8.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hIP8 (IPS) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hIP8 (IPS) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-08 | ses-04 | task-rsvp_language_dir-ap_run-03_consonant_string| -| sub-08 | ses-04 | dir-ap_run-03_consonant_string| -| sub-06 | ses-04 | task-archi_standard_dir-pa_video_computation| -| sub-06 | ses-04 | video_computation| -| sub-06 | ses-04 | dir-pa_video_computation| -| sub-06 | ses-04 | task-archi_standard_ffx_video_computation| -| sub-06 | ses-04 | dir-ffx_video_computation| -| sub-04 | ses-04 | task-archi_standard_ffx_cognitive-motor| -| sub-04 | ses-04 | cognitive-motor| -| sub-04 | ses-04 | dir-ffx_cognitive-motor| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_PIPS_hPO1.md b/deploy/datasets/supplements/data/ibc/right_PIPS_hPO1.md deleted file mode 100644 index bc15fdb3f..000000000 --- a/deploy/datasets/supplements/data/ibc/right_PIPS_hPO1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hPO1 (POS) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hPO1 (POS) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-04 | ses-04 | task-archi_social_dir-ap_triangle_random| -| sub-04 | ses-04 | dir-ap_triangle_random| -| sub-05 | ses-02 | task-hcp_wm_ffx_0back-2back| -| sub-05 | ses-02 | dir-ffx_0back-2back| -| sub-05 | ses-02 | 0back-2back| -| sub-04 | ses-02 | random| -| sub-04 | ses-02 | dir-ffx_random| -| sub-04 | ses-02 | task-hcp_social_ffx_random| -| sub-09 | ses-01 | task-hcp_emotion_dir-ap_shape| -| sub-09 | ses-01 | dir-ap_shape| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_PSC_1.md b/deploy/datasets/supplements/data/ibc/right_PSC_1.md deleted file mode 100644 index 697ec7fcc..000000000 --- a/deploy/datasets/supplements/data/ibc/right_PSC_1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 1 (PostCG) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 1 (PostCG) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-12 | ses-00 | dir-pa_video_left_button_press| -| sub-12 | ses-00 | task-archi_standard_dir-pa_video_left_button_press| -| sub-12 | ses-00 | task-archi_standard_dir-pa_left-right_button_press| -| sub-12 | ses-00 | dir-pa_left-right_button_press| -| sub-12 | ses-00 | dir-ffx_left-right_button_press| -| sub-12 | ses-00 | task-archi_standard_ffx_left-right_button_press| -| sub-12 | ses-00 | left-right_button_press| -| sub-14 | ses-12 | task-mtt_sn_dir-ap_run-03_sn_all_time_cue| -| sub-14 | ses-12 | dir-ap_run-03_sn_all_time_cue| -| sub-04 | ses-04 | dir-ffx_left-right_button_press| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_PSC_2.md b/deploy/datasets/supplements/data/ibc/right_PSC_2.md deleted file mode 100644 index df45d82c4..000000000 --- a/deploy/datasets/supplements/data/ibc/right_PSC_2.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 2 (PostCS) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 2 (PostCS) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-12 | ses-00 | task-archi_spatial_dir-pa_hand-side| -| sub-12 | ses-00 | dir-pa_hand-side| -| sub-09 | ses-05 | dir-ap_video_left_button_press| -| sub-09 | ses-05 | task-archi_standard_dir-ap_video_left_button_press| -| sub-14 | ses-11 | dir-ap_run-03_westside-eastside_event| -| sub-14 | ses-11 | task-mtt_we_dir-ap_run-03_westside-eastside_event| -| sub-02 | ses-01 | dir-ap_motor-cognitive| -| sub-02 | ses-01 | task-archi_standard_dir-ap_motor-cognitive| -| sub-12 | ses-03 | task-archi_standard_ffx_computation-sentences| -| sub-12 | ses-03 | dir-pa_computation-sentences| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_PSC_3a.md b/deploy/datasets/supplements/data/ibc/right_PSC_3a.md deleted file mode 100644 index a8e3ffe7b..000000000 --- a/deploy/datasets/supplements/data/ibc/right_PSC_3a.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 3a (PostCG) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 3a (PostCG) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-08 | ses-02 | task-hcp_motor_dir-ap_tongue-avg| -| sub-08 | ses-02 | task-hcp_motor_dir-ap_tongue| -| sub-08 | ses-02 | dir-ap_tongue| -| sub-08 | ses-02 | dir-ap_tongue-avg| -| sub-01 | ses-00 | task-archi_standard_dir-ap_left-right_button_press| -| sub-01 | ses-00 | dir-ap_left-right_button_press| -| sub-07 | ses-12 | we_time-space_event| -| sub-08 | ses-02 | tongue| -| sub-08 | ses-02 | dir-ffx_tongue| -| sub-08 | ses-02 | dir-ffx_tongue-avg| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_PSC_3b.md b/deploy/datasets/supplements/data/ibc/right_PSC_3b.md deleted file mode 100644 index 347c29dea..000000000 --- a/deploy/datasets/supplements/data/ibc/right_PSC_3b.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 3b (PostCG) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 3b (PostCG) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-08 | ses-11 | dir-pa_run-01_westside-eastside_event| -| sub-08 | ses-11 | task-mtt_we_dir-pa_run-01_westside-eastside_event| -| sub-01 | ses-15 | task-mtt_sn_dir-ap_run-03_sn_before-after_event| -| sub-01 | ses-15 | dir-ap_run-03_sn_before-after_event| -| sub-11 | ses-03 | task-rsvp_language_dir-pa_run-02_jabberwocky-pseudo| -| sub-11 | ses-03 | dir-pa_run-02_jabberwocky-pseudo| -| sub-04 | ses-04 | dir-pa_left-right_button_press| -| sub-04 | ses-04 | task-archi_standard_dir-pa_left-right_button_press| -| sub-01 | ses-24 | dir-pa_run-01_recognition_self-other| -| sub-01 | ses-24 | task-self_dir-pa_run-01_recognition_self-other| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Premotor_6d1.md b/deploy/datasets/supplements/data/ibc/right_Premotor_6d1.md deleted file mode 100644 index cc9f9654a..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Premotor_6d1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 6d1 (PreCG) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 6d1 (PreCG) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-05 | ses-15 | dir-pa_face_quadratic| -| sub-05 | ses-15 | task-preference_faces_dir-pa_face_quadratic| -| sub-04 | ses-12 | task-mtt_sn_dir-pa_run-02_sn_all_space-time_cue| -| sub-04 | ses-12 | dir-pa_run-02_sn_all_space-time_cue| -| sub-15 | ses-14 | dir-pa_run-02_westside-eastside_event| -| sub-15 | ses-14 | task-mtt_we_dir-pa_run-02_westside-eastside_event| -| sub-11 | ses-05 | task-archi_standard_dir-pa_left-right_button_press| -| sub-11 | ses-05 | dir-pa_video_left_button_press| -| sub-11 | ses-05 | dir-pa_left-right_button_press| -| sub-11 | ses-05 | task-archi_standard_dir-pa_video_left_button_press| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Premotor_6d2.md b/deploy/datasets/supplements/data/ibc/right_Premotor_6d2.md deleted file mode 100644 index 804e5a8b2..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Premotor_6d2.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 6d2 (PreCG) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 6d2 (PreCG) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-01 | ses-04 | task-hcp_relational_ffx_relational-match| -| sub-01 | ses-04 | dir-ffx_relational-match| -| sub-01 | ses-04 | relational-match| -| sub-15 | ses-05 | task-pain_movie_dir-ap_movie_pain| -| sub-15 | ses-05 | dir-ap_movie_pain| -| sub-04 | ses-01 | task-hcp_motor_ffx_right_foot| -| sub-04 | ses-01 | right_foot| -| sub-04 | ses-01 | dir-ffx_right_foot| -| sub-04 | ses-01 | task-hcp_motor_dir-pa_right_foot| -| sub-04 | ses-01 | dir-pa_right_foot| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Premotor_6d3.md b/deploy/datasets/supplements/data/ibc/right_Premotor_6d3.md deleted file mode 100644 index 7ab993e9d..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Premotor_6d3.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 6d3 (SFS) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 6d3 (SFS) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-14 | ses-11 | we_before-after_event| -| sub-11 | ses-03 | dir-ap_run-04_complex-simple| -| sub-11 | ses-03 | task-rsvp_language_dir-ap_run-04_complex-simple| -| sub-07 | ses-02 | task-hcp_wm_dir-pa_2back-0back| -| sub-07 | ses-02 | dir-pa_2back-0back| -| sub-13 | ses-04 | dir-pa_hand-side| -| sub-13 | ses-04 | task-archi_spatial_dir-pa_hand-side| -| sub-13 | ses-00 | dir-pa_reading-listening| -| sub-13 | ses-00 | task-archi_standard_dir-pa_reading-listening| -| sub-07 | ses-03 | dir-ap_run-05_word-pseudo| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_SPL_5Ci.md b/deploy/datasets/supplements/data/ibc/right_SPL_5Ci.md deleted file mode 100644 index 923a95452..000000000 --- a/deploy/datasets/supplements/data/ibc/right_SPL_5Ci.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 5Ci (SPL) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 5Ci (SPL) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-12 | ses-00 | task-archi_standard_dir-ap_computation-sentences| -| sub-12 | ses-00 | dir-ap_computation-sentences| -| sub-05 | ses-12 | task-mtt_sn_dir-pa_run-02_sn_before-after_event| -| sub-05 | ses-12 | dir-pa_run-02_sn_before-after_event| -| sub-11 | ses-05 | task-archi_emotional_dir-ap_face_trusty-gender| -| sub-11 | ses-05 | dir-ap_face_trusty-gender| -| sub-13 | ses-12 | dir-pa_run-01_southside-northside_event| -| sub-13 | ses-12 | task-mtt_sn_dir-pa_run-01_southside-northside_event| -| sub-14 | ses-21 | dir-pa_run-02_recognition_self-other| -| sub-14 | ses-21 | task-self_dir-pa_run-02_recognition_self-other| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_SPL_5L.md b/deploy/datasets/supplements/data/ibc/right_SPL_5L.md deleted file mode 100644 index 2cd6310db..000000000 --- a/deploy/datasets/supplements/data/ibc/right_SPL_5L.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 5L (SPL) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 5L (SPL) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-11 | ses-01 | task-hcp_motor_ffx_left_foot-avg| -| sub-11 | ses-01 | task-hcp_motor_dir-ap_left_foot-avg| -| sub-11 | ses-01 | dir-ffx_left_foot-avg| -| sub-11 | ses-01 | left_foot-avg| -| sub-11 | ses-01 | dir-ap_left_foot-avg| -| sub-11 | ses-01 | dir-pa_left_foot-avg| -| sub-11 | ses-01 | task-hcp_motor_dir-pa_left_foot-avg| -| sub-11 | ses-01 | dir-ffx_left_foot| -| sub-11 | ses-01 | dir-pa_left_foot| -| sub-11 | ses-01 | task-hcp_motor_ffx_left_foot| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_SPL_5M.md b/deploy/datasets/supplements/data/ibc/right_SPL_5M.md deleted file mode 100644 index 55889cdb5..000000000 --- a/deploy/datasets/supplements/data/ibc/right_SPL_5M.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 5M (SPL) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 5M (SPL) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-12 | we_time-space_event| -| sub-09 | ses-12 | task-mtt_we_dir-pa_run-01_eastside-westside_event| -| sub-09 | ses-12 | dir-pa_run-01_eastside-westside_event| -| sub-12 | ses-12 | dir-ap_run-03_sn_time-space_event| -| sub-12 | ses-12 | task-mtt_sn_dir-ap_run-03_sn_time-space_event| -| sub-02 | ses-04 | dir-ap_left_foot-avg| -| sub-02 | ses-04 | task-hcp_motor_dir-ap_left_foot-avg| -| sub-05 | ses-12 | task-mtt_sn_dir-pa_run-02_sn_before-after_event| -| sub-05 | ses-12 | dir-pa_run-02_sn_before-after_event| -| sub-15 | ses-02 | task-hcp_motor_dir-ap_left_foot-avg| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_SPL_7A.md b/deploy/datasets/supplements/data/ibc/right_SPL_7A.md deleted file mode 100644 index 66c7dfebe..000000000 --- a/deploy/datasets/supplements/data/ibc/right_SPL_7A.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 7A (SPL) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 7A (SPL) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-06 | ses-04 | dir-ap_triangle_random| -| sub-12 | ses-04 | dir-ap_run-05_complex-simple| -| sub-12 | ses-04 | task-rsvp_language_dir-ap_run-05_complex-simple| -| sub-06 | ses-04 | task-archi_social_dir-ap_triangle_random| -| sub-13 | ses-04 | task-archi_social_dir-pa_false_belief-mechanistic| -| sub-13 | ses-04 | dir-pa_false_belief-mechanistic| -| sub-01 | ses-07 | dir-pa_hand-side| -| sub-01 | ses-07 | task-archi_spatial_dir-pa_hand-side| -| sub-07 | ses-00 | task-archi_spatial_dir-ap_saccades| -| sub-07 | ses-00 | dir-ap_saccades| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_SPL_7M.md b/deploy/datasets/supplements/data/ibc/right_SPL_7M.md deleted file mode 100644 index d31282a57..000000000 --- a/deploy/datasets/supplements/data/ibc/right_SPL_7M.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 7M (SPL) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 7M (SPL) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-05 | ses-03 | dir-ap_run-04_probe| -| sub-05 | ses-03 | task-rsvp_language_dir-ap_run-04_probe| -| sub-13 | ses-17 | enumeration_quadratic| -| sub-13 | ses-17 | task-enumeration_ffx_enumeration_quadratic| -| sub-13 | ses-17 | dir-ffx_enumeration_quadratic| -| sub-05 | ses-02 | task-hcp_wm_ffx_2back_face| -| sub-05 | ses-02 | 2back_face| -| sub-05 | ses-02 | dir-ffx_2back_face| -| sub-05 | ses-02 | dir-ap_2back_face| -| sub-05 | ses-02 | task-hcp_wm_dir-ap_2back_face| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_SPL_7P.md b/deploy/datasets/supplements/data/ibc/right_SPL_7P.md deleted file mode 100644 index 2f359a453..000000000 --- a/deploy/datasets/supplements/data/ibc/right_SPL_7P.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 7P (SPL) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 7P (SPL) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-15 | ses-10 | dir-pa_run-02_vstm_linear| -| sub-15 | ses-10 | task-vstm_dir-pa_run-02_vstm_linear| -| sub-15 | ses-20 | dir-ap_run-04_recognition_self-other| -| sub-15 | ses-20 | task-self_dir-ap_run-04_recognition_self-other| -| sub-09 | ses-17 | dir-pa_movie_mental-pain| -| sub-09 | ses-17 | task-pain_movie_dir-pa_movie_mental-pain| -| sub-05 | ses-00 | task-archi_spatial_ffx_hand-side| -| sub-05 | ses-00 | dir-ffx_hand-side| -| sub-05 | ses-00 | hand-side| -| sub-14 | ses-16 | task-pain_movie_ffx_movie_mental-pain| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_SPL_7PC.md b/deploy/datasets/supplements/data/ibc/right_SPL_7PC.md deleted file mode 100644 index 4a98b491b..000000000 --- a/deploy/datasets/supplements/data/ibc/right_SPL_7PC.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 7PC (SPL) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 7PC (SPL) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-01 | ses-07 | dir-ffx_grasp-orientation| -| sub-01 | ses-07 | grasp-orientation| -| sub-01 | ses-07 | task-archi_spatial_ffx_grasp-orientation| -| sub-01 | ses-07 | task-archi_spatial_dir-ap_grasp-orientation| -| sub-01 | ses-07 | dir-ap_grasp-orientation| -| sub-07 | ses-17 | dir-ap_run-01_vstm_linear| -| sub-07 | ses-17 | task-vstm_dir-ap_run-01_vstm_linear| -| sub-09 | ses-05 | dir-pa_hand-side| -| sub-01 | ses-05 | task-rsvp_language_dir-ap_run-05_probe| -| sub-09 | ses-05 | task-archi_spatial_dir-pa_hand-side| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Supplementarymotor_presma.md b/deploy/datasets/supplements/data/ibc/right_Supplementarymotor_presma.md deleted file mode 100644 index e7dd2f47b..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Supplementarymotor_presma.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 6ma (preSMA, mesial SFG) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 6ma (preSMA, mesial SFG) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-06 | ses-03 | task-rsvp_language_dir-ap_run-04_complex-simple| -| sub-06 | ses-03 | dir-ap_run-04_complex-simple| -| sub-09 | ses-13 | task-mtt_sn_dir-pa_run-02_sn_all_space-time_cue| -| sub-09 | ses-13 | dir-pa_run-02_sn_all_space-time_cue| -| sub-12 | ses-18 | task-emotional_pain_ffx_emotional_pain| -| sub-12 | ses-18 | task-emotional_pain_dir-ap_emotional_pain| -| sub-12 | ses-18 | emotional_pain| -| sub-12 | ses-18 | dir-ffx_emotional_pain| -| sub-12 | ses-18 | dir-ap_emotional_pain| -| sub-11 | ses-12 | dir-ap_run-03_sn_before_event| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Supplementarymotor_sma.md b/deploy/datasets/supplements/data/ibc/right_Supplementarymotor_sma.md deleted file mode 100644 index 193eefc1a..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Supplementarymotor_sma.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 6mp (SMA, mesial SFG) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 6mp (SMA, mesial SFG) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-01 | task-hcp_motor_ffx_cue| -| sub-07 | ses-01 | cue| -| sub-07 | ses-01 | dir-ffx_cue| -| sub-06 | ses-11 | dir-pa_run-01_westside-eastside_event| -| sub-06 | ses-11 | task-mtt_we_dir-pa_run-01_westside-eastside_event| -| sub-05 | ses-20 | recognition_other_hit| -| sub-06 | ses-04 | task-archi_standard_dir-pa_motor-cognitive| -| sub-06 | ses-04 | dir-pa_motor-cognitive| -| sub-14 | ses-00 | dir-pa_motor-cognitive| -| sub-14 | ses-00 | task-archi_standard_dir-pa_motor-cognitive| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Visual_FG1.md b/deploy/datasets/supplements/data/ibc/right_Visual_FG1.md deleted file mode 100644 index 4f9a055be..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Visual_FG1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area FG1 (FusG) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area FG1 (FusG) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-05 | ses-04 | task-archi_spatial_dir-ap_rotation_side| -| sub-05 | ses-04 | dir-ap_rotation_side| -| sub-05 | ses-04 | task-archi_spatial_ffx_rotation_side| -| sub-05 | ses-04 | dir-ffx_rotation_side| -| sub-05 | ses-04 | rotation_side| -| sub-05 | ses-15 | task-preference_faces_dir-ap_face_constant| -| sub-05 | ses-15 | dir-ap_face_constant| -| sub-04 | ses-03 | task-rsvp_language_dir-pa_run-01_probe| -| sub-04 | ses-03 | dir-pa_run-01_probe| -| sub-05 | ses-15 | dir-pa_painting_constant| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Visual_FG2.md b/deploy/datasets/supplements/data/ibc/right_Visual_FG2.md deleted file mode 100644 index ad5a3c196..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Visual_FG2.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area FG2 (FusG) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area FG2 (FusG) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-05 | ses-02 | task-hcp_wm_dir-pa_face-avg| -| sub-05 | ses-02 | dir-pa_face-avg| -| sub-05 | ses-02 | task-hcp_wm_ffx_face-avg| -| sub-05 | ses-02 | dir-ffx_face-avg| -| sub-05 | ses-02 | face-avg| -| sub-11 | ses-19 | dir-pa_run-01_vstm_constant| -| sub-11 | ses-19 | task-vstm_dir-pa_run-01_vstm_constant| -| sub-14 | ses-01 | dir-ap_expression_gender-control| -| sub-14 | ses-01 | task-archi_emotional_dir-ap_expression_gender-control| -| sub-11 | ses-19 | vstm_constant| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Visual_FG3.md b/deploy/datasets/supplements/data/ibc/right_Visual_FG3.md deleted file mode 100644 index 5f2e208b6..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Visual_FG3.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area FG3 (FusG) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area FG3 (FusG) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-11 | ses-16 | task-preference_food_dir-ap_food_constant| -| sub-11 | ses-16 | dir-ap_food_constant| -| sub-06 | ses-12 | task-mtt_sn_dir-ap_run-03_sn_after-before_event| -| sub-06 | ses-12 | dir-ap_run-03_sn_after-before_event| -| sub-11 | ses-16 | task-preference_food_dir-ap_food_linear| -| sub-11 | ses-16 | dir-ap_food_linear| -| sub-14 | ses-01 | task-archi_emotional_ffx_face_gender-control| -| sub-14 | ses-01 | face_gender-control| -| sub-14 | ses-01 | dir-ffx_face_gender-control| -| sub-05 | ses-01 | dir-ap_face-shape| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Visual_FG4.md b/deploy/datasets/supplements/data/ibc/right_Visual_FG4.md deleted file mode 100644 index 09a24221e..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Visual_FG4.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area FG4 (FusG) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area FG4 (FusG) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-11 | ses-05 | task-archi_emotional_ffx_face_gender-control| -| sub-11 | ses-05 | face_gender-control| -| sub-11 | ses-05 | dir-ffx_face_gender-control| -| sub-11 | ses-05 | dir-ap_expression_intention-control| -| sub-11 | ses-05 | task-archi_emotional_dir-ap_expression_intention-control| -| sub-12 | ses-03 | dir-ap_expression_intention-control| -| sub-12 | ses-03 | task-archi_emotional_dir-ap_expression_intention-control| -| sub-14 | ses-02 | dir-ap_face-shape| -| sub-14 | ses-02 | face-shape| -| sub-14 | ses-02 | task-hcp_emotion_dir-ap_face-shape| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Visual_hOc1.md b/deploy/datasets/supplements/data/ibc/right_Visual_hOc1.md deleted file mode 100644 index fe4d0f283..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Visual_hOc1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hOc1 (V1, 17, CalcS) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hOc1 (V1, 17, CalcS) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-12 | ses-22 | dir-ap_run-03_encode_other| -| sub-12 | ses-22 | task-self_dir-ap_run-03_encode_other| -| sub-04 | ses-15 | dir-pa_house_constant| -| sub-04 | ses-15 | task-preference_houses_dir-pa_house_constant| -| sub-11 | ses-00 | task-archi_standard_dir-ap_horizontal-vertical| -| sub-11 | ses-00 | dir-ap_horizontal-vertical| -| sub-12 | ses-22 | dir-ap_run-03_false_alarm| -| sub-12 | ses-22 | dir-ap_run-03_recognition_hit| -| sub-12 | ses-22 | dir-ap_run-03_recognition_other_hit| -| sub-12 | ses-22 | task-self_dir-ap_run-03_recognition_other_hit| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Visual_hOc2.md b/deploy/datasets/supplements/data/ibc/right_Visual_hOc2.md deleted file mode 100644 index c710ca13a..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Visual_hOc2.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hOc2 (V2, 18) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hOc2 (V2, 18) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-06 | ses-04 | dir-pa_vertical-horizontal| -| sub-06 | ses-04 | task-archi_standard_dir-pa_vertical-horizontal| -| sub-14 | ses-02 | task-hcp_emotion_dir-pa_face| -| sub-14 | ses-02 | dir-pa_face| -| sub-02 | ses-06 | task-rsvp_language_dir-pa_run-01_complex| -| sub-02 | ses-06 | dir-pa_run-01_complex| -| sub-09 | ses-01 | dir-pa_reward| -| sub-09 | ses-01 | dir-ffx_reward| -| sub-09 | ses-01 | reward| -| sub-09 | ses-01 | task-hcp_gambling_ffx_reward| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Visual_hOc3d.md b/deploy/datasets/supplements/data/ibc/right_Visual_hOc3d.md deleted file mode 100644 index 95239ae1f..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Visual_hOc3d.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hOc3d (Cuneus) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hOc3d (Cuneus) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-12 | ses-04 | task-rsvp_language_dir-ap_run-03_word-pseudo| -| sub-06 | ses-02 | dir-ap_relational| -| sub-12 | ses-04 | dir-ap_run-03_word-pseudo| -| sub-06 | ses-02 | task-hcp_relational_dir-ap_relational| -| sub-09 | ses-01 | task-hcp_gambling_ffx_reward-punishment| -| sub-09 | ses-01 | reward-punishment| -| sub-09 | ses-01 | dir-ffx_reward-punishment| -| sub-09 | ses-00 | dir-pa_vertical_checkerboard| -| sub-09 | ses-00 | task-archi_standard_dir-pa_vertical_checkerboard| -| sub-06 | ses-03 | dir-pa_run-02_jabberwocky-pseudo| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Visual_hOc3v.md b/deploy/datasets/supplements/data/ibc/right_Visual_hOc3v.md deleted file mode 100644 index d38603342..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Visual_hOc3v.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hOc3v (LingG) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hOc3v (LingG) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-01 | ses-24 | recognition_hit-correct_rejection| -| sub-01 | ses-24 | dir-ap_run-03_correct_rejection| -| sub-01 | ses-24 | task-self_dir-ap_run-03_recognition_self_hit| -| sub-01 | ses-24 | task-self_dir-ap_run-03_recognition_hit-correct_rejection| -| sub-01 | ses-24 | task-self_dir-ap_run-03_instructions| -| sub-01 | ses-24 | task-self_dir-ap_run-03_recognition_hit| -| sub-01 | ses-24 | dir-ap_run-03_recognition_hit| -| sub-01 | ses-24 | task-self_dir-ap_run-03_recognition_other_hit| -| sub-01 | ses-24 | dir-ap_run-03_recognition_self_hit| -| sub-01 | ses-24 | dir-ap_run-03_recognition_hit-correct_rejection| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Visual_hOc4d.md b/deploy/datasets/supplements/data/ibc/right_Visual_hOc4d.md deleted file mode 100644 index 3703a38e6..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Visual_hOc4d.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hOc4d (Cuneus) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hOc4d (Cuneus) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-04 | ses-01 | dir-ap_reward| -| sub-04 | ses-01 | task-hcp_gambling_dir-ap_reward| -| sub-04 | ses-01 | dir-pa_reward-punishment| -| sub-04 | ses-01 | task-hcp_gambling_dir-pa_reward-punishment| -| sub-04 | ses-01 | task-hcp_gambling_ffx_reward-punishment| -| sub-04 | ses-01 | reward-punishment| -| sub-04 | ses-01 | dir-ffx_reward-punishment| -| sub-12 | ses-02 | task-hcp_wm_dir-pa_0back_tools| -| sub-12 | ses-02 | dir-pa_0back_tools| -| sub-12 | ses-02 | dir-ffx_0back_tools| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Visual_hOc4la.md b/deploy/datasets/supplements/data/ibc/right_Visual_hOc4la.md deleted file mode 100644 index 83f541ec6..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Visual_hOc4la.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hOc4la (LOC) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hOc4la (LOC) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-12 | ses-00 | dir-ffx_rotation_side| -| sub-12 | ses-00 | rotation_side| -| sub-12 | ses-00 | task-archi_spatial_ffx_rotation_side| -| sub-01 | ses-00 | task-archi_spatial_dir-pa_rotation_side| -| sub-01 | ses-00 | dir-pa_rotation_side| -| sub-02 | ses-06 | dir-pa_run-01_word_list| -| sub-02 | ses-06 | task-rsvp_language_dir-pa_run-01_word_list| -| sub-05 | ses-02 | mental| -| sub-05 | ses-02 | task-hcp_social_ffx_mental| -| sub-05 | ses-02 | dir-ffx_mental| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Visual_hOc4lp.md b/deploy/datasets/supplements/data/ibc/right_Visual_hOc4lp.md deleted file mode 100644 index 0a028d2fb..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Visual_hOc4lp.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hOc4lp (LOC) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hOc4lp (LOC) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-06 | ses-02 | task-hcp_wm_dir-pa_0back-2back| -| sub-06 | ses-02 | dir-pa_0back-2back| -| sub-15 | ses-10 | vstm_linear| -| sub-08 | ses-03 | task-hcp_wm_dir-pa_tools-avg| -| sub-08 | ses-03 | dir-pa_tools-avg| -| sub-15 | ses-06 | dir-pa_food_constant| -| sub-15 | ses-06 | task-preference_food_dir-pa_food_constant| -| sub-09 | ses-18 | dir-ap_run-01_vstm_linear| -| sub-09 | ses-18 | task-vstm_dir-ap_run-01_vstm_linear| -| sub-09 | ses-13 | task-mtt_sn_dir-pa_run-02_sn_all_event_response| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Visual_hOc4v.md b/deploy/datasets/supplements/data/ibc/right_Visual_hOc4v.md deleted file mode 100644 index 1baa47395..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Visual_hOc4v.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hOc4v (LingG) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hOc4v (LingG) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-15 | ses-00 | task-archi_standard_dir-pa_reading-listening| -| sub-15 | ses-00 | dir-pa_reading-listening| -| sub-13 | ses-04 | dir-pa_expression_gender-control| -| sub-15 | ses-00 | dir-pa_video_computation| -| sub-13 | ses-04 | task-archi_emotional_dir-pa_expression_gender-control| -| sub-15 | ses-00 | task-archi_standard_dir-pa_video_computation| -| sub-13 | ses-02 | task-hcp_wm_dir-pa_2back_face| -| sub-13 | ses-02 | dir-pa_2back_face| -| sub-09 | ses-00 | task-archi_standard_dir-ap_reading-listening| -| sub-09 | ses-00 | dir-ffx_reading-listening| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Visual_hOc5.md b/deploy/datasets/supplements/data/ibc/right_Visual_hOc5.md deleted file mode 100644 index af7d1f26c..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Visual_hOc5.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hOc5 (LOC) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hOc5 (LOC) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-06 | ses-02 | task-hcp_social_ffx_random| -| sub-06 | ses-02 | dir-ffx_random| -| sub-06 | ses-02 | random| -| sub-05 | ses-02 | task-hcp_wm_dir-pa_0back_body| -| sub-05 | ses-02 | dir-pa_0back_body| -| sub-15 | ses-00 | dir-ap_saccades| -| sub-15 | ses-00 | task-archi_spatial_dir-ap_saccades| -| sub-01 | ses-00 | dir-ap_saccades| -| sub-01 | ses-00 | task-archi_spatial_ffx_saccades| -| sub-01 | ses-00 | task-archi_spatial_dir-ap_saccades| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Visual_hOc6.md b/deploy/datasets/supplements/data/ibc/right_Visual_hOc6.md deleted file mode 100644 index 591163a07..000000000 --- a/deploy/datasets/supplements/data/ibc/right_Visual_hOc6.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hOc6 (POS) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hOc6 (POS) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-15 | dir-ffx_house_quadratic| -| sub-07 | ses-15 | task-preference_houses_ffx_house_quadratic| -| sub-07 | ses-15 | house_quadratic| -| sub-07 | ses-00 | dir-ap_triangle_mental| -| sub-07 | ses-00 | task-archi_social_dir-ap_triangle_mental| -| sub-05 | ses-03 | task-rsvp_language_dir-ap_run-03_jabberwocky-pseudo| -| sub-05 | ses-03 | dir-ap_run-03_jabberwocky-pseudo| -| sub-05 | ses-11 | dir-pa_run-02_we_all_time-space_cue| -| sub-05 | ses-11 | task-mtt_we_dir-pa_run-02_we_all_time-space_cue| -| sub-14 | ses-04 | task-rsvp_language_dir-ap_run-04_jabberwocky-pseudo| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/julich_brain_name_to_nexusid.json b/deploy/datasets/supplements/data/julich_brain_name_to_nexusid.json deleted file mode 100644 index bf9480225..000000000 --- a/deploy/datasets/supplements/data/julich_brain_name_to_nexusid.json +++ /dev/null @@ -1,1019 +0,0 @@ -[ - [ - "Ch 123 (Basal Forebrain)", - { - "kg": { - "kgSchema": "minds/core/parcellationregion/v1.0.0", - "kgId": "bb111a95-e04c-4987-8254-4af4ed8b0022" - } - } - ], - [ - "Ch 4 (Basal Forebrain)", - { - "kg": { - "kgSchema": "minds/core/parcellationregion/v1.0.0", - "kgId": "a5c9d95f-8e7c-4454-91b6-a790387370fc" - } - } - ], - [ - "Ch 123 (Basal Forebrain)", - { - "kg": { - "kgSchema": "minds/core/parcellationregion/v1.0.0", - "kgId": "bb111a95-e04c-4987-8254-4af4ed8b0022" - } - } - ], - [ - "LB (Amygdala)", - { - "kg": { - "kgSchema": "minds/core/parcellationregion/v1.0.0", - 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Automatic fiber bundle segmentation in massive tractography datasets using a multi-subject bundle atlas. 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(Glu)","GABAá´€(GABA)","GABAá´ƒ(GABA)","GABAá´€(BZ)","Mâ‚(ACh)","Mâ‚‚(ACh)","M₃(ACh)","α₄β₂(ACh)","αâ‚(NA)","α₂(NA)","5-HTâ‚á´€(5-HT)","5-HTâ‚‚(5-HT)","Dâ‚(DA)"],"datasets":[{"label":"mean","data":["463","635","1259","3957","1998","2742","2442","479","172","827","70","361","698","303","441","136"]},{"label":"mean_sd","data":["187","405","278","1655","577","291","876","192","77","348","34","169","mg/mol","123","238","55"]}],"chartOptions":{"scale":{"ticks":{"showLabelBackdrop":false}},"legend":{"display":true},"title":{"text":"Receptor density fingerprint of Area PGa (fmol/mg protein)","display":true},"elements":{"point":{"radius":0,"hoverRadius":8,"hitRadius":4}}},"colors":[{"borderColor":"rgba(255,255,255,1)","backgroundColor":"rgba(5,198,198,0.2)"},{"borderColor":"rgba(255,255,255,1)"}]}}]]] diff --git a/deploy/datasets/supplements/data/waxholm.json b/deploy/datasets/supplements/data/waxholm.json deleted file mode 100644 index db52cc934..000000000 --- a/deploy/datasets/supplements/data/waxholm.json +++ /dev/null @@ -1,112 +0,0 @@ -[ - { - "Dataset name": "3D high resolution SRXTM image data of cortical vasculature of rat brain.", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Rattus%20norvegicus#Dataset/943484f6f124311f2a60861e29f49b3e", - "Reference atlas": "Waxholm Space atlas of the Sprague Dawley rat brain, version 2", - "Semantic link(s)": "Neocortex", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2FHCPQ-MY8", - "PLA": "18", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Atlas of normal rat brain cyto- and myeloarchitecture", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Rattus%20norvegicus#Dataset/6ce1f96ae210b2335b75a793367e3865", - "Reference atlas": "Waxholm Space atlas of the Sprague Dawley rat brain, version 2", - "Semantic link(s)": "Whole Brain (v2.0)", - "Coordinate-based": "QuickNII", - "DOI": "https://doi.org/10.25493%2FC63A-FEY", - "PLA": "165", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Brain-wide distribution of glutamate type 1 transporter protein (GLT1)", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/63bbb845ac6d2f1839f919c2ef0455bc", - "Reference atlas": "Waxholm Space atlas of the Sprague Dawley rat brain, version 2", - "Semantic link(s)": "Whole Brain (v2.0)", - "Coordinate-based": "QuickNII", - "DOI": "https://doi.org/10.25493%2FY147-2CE", - "PLA": "167", - "EMBARGO": "NO", - "Comments:": "Also in CCF v3" - }, - { - "Dataset name": "Brain-wide distribution of vesicular glutamate transporter type 3 (VGLUT3)", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Rattus%20norvegicus#Dataset/ca2de49ed9e6660242b937c8e9f2e4eb", - "Reference atlas": "Waxholm Space atlas of the Sprague Dawley rat brain, version 2", - "Semantic link(s)": "Whole Brain (v2.0)", - "Coordinate-based": "QuickNII", - "DOI": "https://doi.org/10.25493%2FGP15-1MS", - "PLA": "168", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Graphical representation of rat cortical vasculature reconstructed from high resolution 3D SRXTM data.", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Rattus%20norvegicus#Dataset/fc6865e8670b65aebec05b73f9e795c7", - "Reference atlas": "Waxholm Space atlas of the Sprague Dawley rat brain, version 2", - "Semantic link(s)": "Neocortex", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2FK243-13K", - "PLA": "17", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Large scale multi-channel EEG in rats", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Rattus%20norvegicus#Dataset/c5aab03945700ffb1a2fd2fd83819340", - "Reference atlas": "Waxholm Space atlas of the Sprague Dawley rat brain, version 2", - "Semantic link(s)": "Neocortex", - "Coordinate-based": "Point coordinates", - "DOI": "https://doi.org/10.25493%2F4SPM-V00", - "PLA": "", - "EMBARGO": "YES", - "Comments:": "" - }, - { - "Dataset name": "Loose-cell attached patch-clamp recordings from cerebellar granule cells", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Rattus%20norvegicus#Dataset/430c8508746cbd9f8f5c91b66ae97316", - "Reference atlas": "Waxholm Space atlas of the Sprague Dawley rat brain, version 2", - "Semantic link(s)": "Cerebellum", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2F6R48-E3V", - "PLA": "810", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Recordings of cerebellar neuronal firing induced by currents steps", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Rattus%20norvegicus#Dataset/5e245cf67a42a14a56bc43913f7bf28a", - "Reference atlas": "Waxholm Space atlas of the Sprague Dawley rat brain, version 2", - "Semantic link(s)": "Cerebellum", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2F4AF6-WSD", - "PLA": "810", - "EMBARGO": "NO", - "Comments:": "Also in CCF v3" - }, - { - "Dataset name": "Recordings of excitatory postsynaptic currents from cerebellar neurons", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Rattus%20norvegicus#Dataset/a1ba394b5f353a67f9cec3549891d77b", - "Reference atlas": "Waxholm Space atlas of the Sprague Dawley rat brain, version 2", - "Semantic link(s)": "Cerebellum", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2FF2VK-MB4", - "PLA": "810", - "EMBARGO": "NO", - "Comments:": "Also in CCF v3" - }, - { - "Dataset name": "Recordings of excitatory postsynaptic potentials from cerebellar neurons", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Rattus%20norvegicus#Dataset/2ea6f32e8dfd644d426b93aac0ae6eec", - "Reference atlas": "Waxholm Space atlas of the Sprague Dawley rat brain, version 2", - "Semantic link(s)": "Cerebellum", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2FG07Q-K87", - "PLA": "810", - "EMBARGO": "NO", - "Comments:": "Also in CCF v3" - } -] \ No newline at end of file diff --git a/deploy/datasets/supplements/previewFile.js b/deploy/datasets/supplements/previewFile.js deleted file mode 100644 index 8a48ef017..000000000 --- a/deploy/datasets/supplements/previewFile.js +++ /dev/null @@ -1,72 +0,0 @@ -/** - * TODO deprecate? - */ - -const fs = require('fs') -const path = require('path') -const { reconfigureFlag, reconfigureUrl } = require('../../util/reconfigPrecomputedServer') - -const DISABLE_RECEPTOR_PREVIEW = process.env.DISABLE_RECEPTOR_PREVIEW -const DISABLE_JUBRAIN_PMAP = process.env.DISABLE_JUBRAIN_PMAP -const DISABLE_JUBRAIN_PMAP_V17 = process.env.DISABLE_JUBRAIN_PMAP_V17 -const DISABLE_JUBRAIN_PMAP_EXTRA = process.env.DISABLE_JUBRAIN_PMAP_EXTRA -const DISABLE_DWM_PMAP = process.env.DISABLE_DWM_PMAP -const HOSTNAME = process.env.HOSTNAME || 'http://localhost:3000' -const HOST_PATHNAME = process.env.HOST_PATHNAME || '' - -let previewMap = new Map(), - previewMapKeySet = new Set() - -const readFile = (filename) => new Promise((resolve) => { - fs.readFile(path.join(__dirname, 'data', filename), 'utf-8', (err, data) => { - if (err){ - console.warn('read file error', err) - return resolve([]) - } - resolve(JSON.parse(data)) - }) -}) - -Promise.all([ - DISABLE_RECEPTOR_PREVIEW ? Promise.resolve([]) : readFile('receptorPreview.json'), - DISABLE_JUBRAIN_PMAP ? Promise.resolve([]) : readFile('pmapJubrainPreview.json'), - DISABLE_DWM_PMAP ? Promise.resolve([]) : readFile('pmapDWMPreview.json'), - DISABLE_JUBRAIN_PMAP_V17 ? Promise.resolve([]) : readFile('pmapJuBrainV17Preview.json'), - DISABLE_JUBRAIN_PMAP_EXTRA ? Promise.resolve([]) : readFile('pmapJuBrainExtraPreview.json') -]) - .then(arrOfA => arrOfA.reduce((acc, item) => acc.concat(item), [])) - .then(iterable => { - previewMap = new Map(iterable) - previewMapKeySet = new Set(previewMap.keys()) - }) - .catch(e => { - console.error('preview file error', e) - }) - -const processFile = ({ url, ...rest }) => { - if (!url) return { ...rest } - const processedUrl = !/^http/.test(url) - ? `${HOSTNAME}/${url}` - : reconfigureFlag - ? reconfigureUrl(url) - : url - return { - ...rest, - url: processedUrl - } -} - -exports.getPreviewFile = ({ datasetName, templateSelected }) => previewMap.get(datasetName) - ? Promise.resolve( - previewMap.get(datasetName) - .filter(({ templateSpace }) => { - if (!templateSpace) return true - if (!templateSelected) return true - return templateSpace === templateSelected - }) - .map(processFile) - ) - : Promise.reject(`Preview file cannot be found!`) - -exports.getAllPreviewDSNames = () => Array.from(previewMap.keys()) -exports.hasPreview = ({ datasetName }) => previewMapKeySet.has(datasetName) \ No newline at end of file diff --git a/deploy/datasets/testData/allen2015.js b/deploy/datasets/testData/allen2015.js deleted file mode 100644 index 0220ae2a3..000000000 --- a/deploy/datasets/testData/allen2015.js +++ /dev/null @@ -1,193 +0,0 @@ -module.exports = [ - { - "formats" : [], - "name" : "Neuropsin tetracycline-transactivator expression: horizontal sections (case 2877)", - "publications" : [ - { - "cite" : "Lillehaug, S., Yetman, M.J., Puchades,M.A., Checinska, M.M., Kleven, H., Jankowsky, J.L., Bjaalie, J.G., Leergaard, T.B. (2019). Brain-wide distribution of reporter expression in five transgenic tetracycline-transactivator mouse lines. Scientific Data, 6, 190028.", - "name" : "Brain-wide distribution of reporter expression in five transgenic tetracycline-transactivator mouse lines", - "doi" : "10.1038/sdata.2019.28" - }, - { - "doi" : "10.1007/s00429-015-1040-9", - "name" : "Transgene expression in the Nop-tTA driver line is not inherently restricted to the entorhinal cortex", - "cite" : "Yetman, M. J., Lillehaug, S., Bjaalie, J. G., Leergaard, T. B., & Jankowsky, J. L. (2015). Transgene expression in the Nop-tTA driver line is not inherently restricted to the entorhinal cortex. Brain Structure and Function, 221(4), 2231–2249. " - } - ], - "contributors" : [ - "Jankowsky, Joanna L.", - "Leergaard, Trygve B.", - "Bjaalie, Jan G.", - "Lillehaug, Sveinung", - "Yetman, Michael J." - ], - "project" : [ - "Transgene expression in tetracycline-transactivator driver lines" - ], - "methods" : [ - "Immunohistochemistry", - "Reporter genes", - "Brightfield microscopy", - "Reporter proteins" - ], - "activity" : [ - { - "preparation" : [ - "Ex vivo" - ], - "protocols" : [ - "Prss19", - "Kallikrein related-peptidase 8", - "Klk8-tTA", - "EC-tTA", - "tTA-EC", - "B6.Cg-Tg(Klk8-tTA)QMmay/MullMmmh", - "Neuropsin promoter", - "Atlas", - "Brain-wide", - "Tet-lacZ reporter", - "Double-transgenic", - "X-gal", - "histology", - "Reporter gene", - "Conditional model", - "Tet-off", - "Tetracycline transactivator protein", - "tTA", - "Nop-tTA", - "Nop" - ] - } - ], - "kgReference" : [ - "10.25493/AYBB-BXV" - ], - "id" : "d56b1fe14bb84987a3a2340e21652b2d", - "custodians" : [ - "Jankowsky, Joanna L." - ], - "parcellationRegion" : [ - { - "species" : [], - "name" : "Mouse Whole brain (v3 2015)", - "alias" : "Whole brain", - "fullId" : "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationregion/v1.0.0/2bdfac7a-b38c-4c55-9843-0b56cb90bb67" - } - ], - "license" : [], - "embargoStatus" : [ - "Free" - ], - "species" : [ - "Mus musculus" - ], - "licenseInfo" : [ - { - "url" : "https://creativecommons.org/licenses/by/4.0/", - "name" : "Creative Commons Attribution 4.0 International" - } - ], - "datasetDOI" : [ - { - "doi" : "10.1038/sdata.2019.28", - "cite" : "Lillehaug, S., Yetman, M.J., Puchades,M.A., Checinska, M.M., Kleven, H., Jankowsky, J.L., Bjaalie, J.G., Leergaard, T.B. (2019). Brain-wide distribution of reporter expression in five transgenic tetracycline-transactivator mouse lines. Scientific Data, 6, 190028." - }, - { - "cite" : "Yetman, M. J., Lillehaug, S., Bjaalie, J. G., Leergaard, T. B., & Jankowsky, J. L. (2015). Transgene expression in the Nop-tTA driver line is not inherently restricted to the entorhinal cortex. Brain Structure and Function, 221(4), 2231–2249. ", - "doi" : "10.1007/s00429-015-1040-9" - } - ], - "description" : "Bright-field microscopy images of serial horizontal brain sections showing neuropsin (Nop) promoter expression in a bigenic Nop-tetracycline-transactivator (tTA) mouse brain (case 2877, adult male), using a driver-reporter construct in which the Nop-tTA promoter regulates the expression of the E. coli derived LacZ reporter gene encoding β-galactosidase, which is visualized histologically using X-gal (5-Bromo-4-chloro-3-indolyl β-d-galactopyranoside) as a substrate. Methodological details are provided in Yetman et al., Brain Struct Funct 221:2231-49, 2016. Our data show that the Nop-tTA promoter mainly is expressed in the entorhinal cortex, but also in several other cortical regions.", - "referenceSpaces" : [], - "parcellationAtlas" : [ - { - "id" : "39a1384b-8413-4d27-af8d-22432225401f", - "name" : "Allen Mouse Common Coordinate Framework v3 2015", - "fullId" : "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationatlas/v1.0.0/39a1384b-8413-4d27-af8d-22432225401f" - } - ], - "fullId" : "https://nexus.humanbrainproject.org/v0/data/minds/core/dataset/v1.0.0/82a9c981-0ba0-4a5a-9bbc-a3b74c568f5b", - "files" : [] - }, - { - "formats": [], - "datasetDOI": [], - "activity": [ - { - "protocols": [], - "preparation": [ - "Ex vivo" - ] - } - ], - "referenceSpaces": [], - "methods": [ - "Patch clamp techniques", - "Voltage clamp recording", - "Single electrode recording", - "Knockin" - ], - "custodians": [ - "Cherubini, Enrico" - ], - "project": [ - "STDP" - ], - "description": "Spike-time dependent plasticity (STDP is a particular form of Hebbian type of learning which consists in bidirectional modifications of synaptic strength according to the temporal order of pre- and postsynaptic spiking (*Dan Y1, Poo MM (2006) Spike timing-dependent plasticity: from synapse to perception. Physiol Rev 86:1033-1048*). Thus, positively correlated pre- and postsynaptic spiking (pre before post) within a critical window leads to long term potentiation (LTP), whereas a negative correlation (post before pre) leads to long term depression (LTD). \nAt the neonatal stage, the hippocampal mossy fiber (MF)-CA3 is GABAergic and exhibits STDP. Our data demonstrate that, at the same age, positive pairing fails to induce STD-LTP at MF-CA3 synapses in hippocampal slices obtained from neuroligin-3 (NL3) knock-in (NL3<sup>R451C</sup> KI) and NL3 knock-out (KO) mice. Similarly, in NLR<sup>451C</sup> KI mice, negative pairing failed to cause STD-LTD. In contrast, STD-LTP and STD-LTD can be readily produced in control age-matched WT littermates. In NLR<sup>451C</sup> KI mice, the impairment in STD-LTP is maintained in adulthood when MF are glutamatergic. This set of data refers to the neonate, NLR<sup>451C</sup> KI, positive pairing condition.", - "parcellationAtlas": [ - { - "name": "Allen Mouse Common Coordinate Framework v3 2015", - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationatlas/v1.0.0/39a1384b-8413-4d27-af8d-22432225401f", - "id": "39a1384b-8413-4d27-af8d-22432225401f" - } - ], - "licenseInfo": [ - { - "name": "Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International", - "url": "https://creativecommons.org/licenses/by-nc-sa/4.0/" - } - ], - "embargoStatus": [ - "Embargoed" - ], - "license": [ - { - "name": "Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International", - "relativeUrl": "minds/core/licensetype/v1.0.0/88e71f2d-4fcc-4cb1-bc9f-cbab9ab2058b" - } - ], - "parcellationRegion": [ - { - "species": [ - { - "identifier": [ - "899694120d41aab8054900b51d369ef8", - "e07b81dd7bbdf2727f6df2f4013ed025" - ], - "name": "Mus musculus", - "@id": "https://nexus.humanbrainproject.org/v0/data/minds/core/species/v1.0.0/cfc1656c-67d1-4d2c-a17e-efd7ce0df88c" - } - ], - "name": "Mouse Hippocampal region (v3 2015)", - "alias": "Hippocampal region", - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationregion/v1.0.0/fc429031-1632-49a4-b9c6-00ab72100c85" - } - ], - "species": [ - "Mus musculus" - ], - "name": "Spike time dependent plasticity (STDP) data from neonate neuroligin-3 knock-in mice, positive pairing", - "files": [], - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/dataset/v1.0.0/88e4e64e-b053-48b3-828b-306e386621e0", - "contributors": [ - "Cherubini, Enrico", - "Sgritta, Martina", - "Marchetti, Cristina" - ], - "id": "1a6cbd0b55a13e7b8775d3417281a83f", - "kgReference": [ - "10.25493/PF1P-YSE" - ], - "publications": [] - } -] \ No newline at end of file diff --git a/deploy/datasets/testData/bigbrain.js b/deploy/datasets/testData/bigbrain.js deleted file mode 100644 index 6e5c5ad6f..000000000 --- a/deploy/datasets/testData/bigbrain.js +++ /dev/null @@ -1,141 +0,0 @@ -module.exports = [ - { - "formats": [], - "datasetDOI": [ - { - "cite": "Schleicher, A., Amunts, K., Geyer, S., Morosan, P., & Zilles, K. (1999). Observer-Independent Method for Microstructural Parcellation of Cerebral Cortex: A Quantitative Approach to Cytoarchitectonics. NeuroImage, 9(1), 165–177. ", - "doi": "10.1006/nimg.1998.0385" - }, - { - "cite": "Spitzer, H., Kiwitz, K., Amunts, K., Harmeling, S., Dickscheid, T. (2018). Improving Cytoarchitectonic Segmentation of Human Brain Areas with Self-supervised Siamese Networks. In: Frangi A., Schnabel J., Davatzikos C., Alberola-López C., Fichtinger G. (eds) Medical Image Computing and Computer Assisted Intervention – MICCAI 2018. MICCAI 2018. Lecture Notes in Computer Science, vol 11072. Springer, Cham.", - "doi": "10.1007/978-3-030-00931-1_76" - }, - { - "cite": "Spitzer, H., Amunts, K., Harmeling, S., and Dickscheid, T. (2017). Parcellation of visual cortex on high-resolution histological brain sections using convolutional neural networks, in 2017 IEEE 14th International Symposium on Biomedical Imaging (ISBI 2017), pp. 920–923.", - "doi": "10.1109/ISBI.2017.7950666" - }, - { - "cite": "Amunts, K., Lepage, C., Borgeat, L., Mohlberg, H., Dickscheid, T., Rousseau, M. -E., Bludau, S., Bazin, P. -L., Lewis, L. B., Oros-Peusquens, A.-M., Shah, N. J., Lippert, T., Zilles, K., Evans, A. C. (2013). BigBrain: An Ultrahigh-Resolution 3D Human Brain Model. Science, 340(6139),1472-5.", - "doi": "10.1126/science.1235381" - } - ], - "activity": [ - { - "protocols": [ - "imaging" - ], - "preparation": [ - "Ex vivo" - ] - }, - { - "protocols": [ - "histology" - ], - "preparation": [ - "Ex vivo" - ] - }, - { - "protocols": [ - "brain mapping" - ], - "preparation": [ - "Ex vivo" - ] - }, - { - "protocols": [ - "analysis technique" - ], - "preparation": [ - "Ex vivo" - ] - } - ], - "referenceSpaces": [ - { - "name": "BigBrain", - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/referencespace/v1.0.0/a1655b99-82f1-420f-a3c2-fe80fd4c8588" - } - ], - "methods": [ - "magnetic resonance imaging (MRI)", - "silver staining", - "cytoarchitectonic mapping", - "Deep-Learning based cytoarchitectonic mapping" - ], - "custodians": [ - "Amunts, Katrin" - ], - "project": [ - "Ultrahigh resolution 3D maps of cytoarchitectonic areas in the Big Brain model" - ], - "description": "This dataset contains automatically created cytoarchitectonic maps of Area hOc1 (V1, 17, CalcS) in the BigBrain dataset [Amunts et al. 2013]. The mappings were created using Deep Convolutional Neural networks based on the idea presented in Spitzer et al. 2017 and Spitzer et al. 2018, which were trained on delineations on every 120th section created using the semi-automatic method presented in Schleicher et al. 1999. Mappings are available on every section. Their quality was observed by a trained neuroscientist to exclude sections with low quality results from further processing. Automatic mappings were then transformed to the 3D reconstructed BigBrain space using transformations used in Amunts et al. 2013, which were provided by Claude Lepage (McGill). Individual sections were used to assemble a 3D volume of the area, low quality results were replaced by interpolations between nearest neighboring sections. The volume was then smoothed using an 11³ median filter and largest connected components were identified to remove false positive results of the classification algorithm.\nThe dataset consists of a single HDF5 file containing the volume in RAS dimension ordering and 20 micron isotropic resolution in the dataset “volume†and affine transformation matrix in the dataset “affineâ€. An additional dataset “interpolation_info†contains a vector with an integer value for each section which indicates if a section was interpolated due to low quality results (value 2) or not (value 1).\nDue to the large size of the volume, it’s recommended to view the data online using the provided viewer link.\n", - "parcellationAtlas": [ - { - "name": "Jülich Cytoarchitechtonic Brain Atlas (human)", - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579-26", - "id": [ - "deec923ec31a82f89a9c7c76a6fefd6b", - "e2d45e028b6da0f6d9fdb9491a4de80a" - ] - } - ], - "licenseInfo": [ - { - "name": "Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International", - "url": "https://creativecommons.org/licenses/by-nc-sa/4.0/" - } - ], - "embargoStatus": [ - "Free" - ], - "license": [], - "parcellationRegion": [ - { - "species": [], - "name": "Area hOc1 (V1, 17, CalcS)", - "alias": null - } - ], - "species": [ - "Homo sapiens" - ], - "name": "Ultrahigh resolution 3D cytoarchitectonic map of Area hOc1 (V1, 17, CalcS) created by a Deep-Learning assisted workflow", - "files": [], - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/dataset/v1.0.0/696d6062-3b86-498f-9ca6-e4d67b433396", - "contributors": [ - "Dickscheid, Timo", - "Amunts, Katrin", - "Kiwitz, Kai", - "Schiffer, Christian " - ], - "id": "696d6062-3b86-498f-9ca6-e4d67b433396", - "kgReference": [ - "10.25493/DGEZ-Q93" - ], - "publications": [ - { - "name": "Observer-Independent Method for Microstructural Parcellation of Cerebral Cortex: A Quantitative Approach to Cytoarchitectonics", - "cite": "Schleicher, A., Amunts, K., Geyer, S., Morosan, P., & Zilles, K. (1999). Observer-Independent Method for Microstructural Parcellation of Cerebral Cortex: A Quantitative Approach to Cytoarchitectonics. NeuroImage, 9(1), 165–177. ", - "doi": "10.1006/nimg.1998.0385" - }, - { - "name": "Improving Cytoarchitectonic Segmentation of Human Brain Areas with Self-supervised Siamese Networks", - "cite": "Spitzer, H., Kiwitz, K., Amunts, K., Harmeling, S., Dickscheid, T. (2018). Improving Cytoarchitectonic Segmentation of Human Brain Areas with Self-supervised Siamese Networks. In: Frangi A., Schnabel J., Davatzikos C., Alberola-López C., Fichtinger G. (eds) Medical Image Computing and Computer Assisted Intervention – MICCAI 2018. MICCAI 2018. Lecture Notes in Computer Science, vol 11072. Springer, Cham.", - "doi": "10.1007/978-3-030-00931-1_76" - }, - { - "name": "Parcellation of visual cortex on high-resolution histological brain sections using convolutional neural networks", - "cite": "Spitzer, H., Amunts, K., Harmeling, S., and Dickscheid, T. (2017). Parcellation of visual cortex on high-resolution histological brain sections using convolutional neural networks, in 2017 IEEE 14th International Symposium on Biomedical Imaging (ISBI 2017), pp. 920–923.", - "doi": "10.1109/ISBI.2017.7950666" - }, - { - "name": "BigBrain: An Ultrahigh-Resolution 3D Human Brain Model", - "cite": "Amunts, K., Lepage, C., Borgeat, L., Mohlberg, H., Dickscheid, T., Rousseau, M. -E., Bludau, S., Bazin, P. -L., Lewis, L. B., Oros-Peusquens, A.-M., Shah, N. J., Lippert, T., Zilles, K., Evans, A. C. (2013). BigBrain: An Ultrahigh-Resolution 3D Human Brain Model. Science, 340(6139),1472-5.", - "doi": "10.1126/science.1235381" - } - ] - } -] \ No newline at end of file diff --git a/deploy/datasets/testData/colin27.js b/deploy/datasets/testData/colin27.js deleted file mode 100644 index 43389fe15..000000000 --- a/deploy/datasets/testData/colin27.js +++ /dev/null @@ -1,113 +0,0 @@ -module.exports = [ - { - "formats": [ - "NIFTI" - ], - "datasetDOI": [ - { - "cite": "Amunts, K., Malikovic, A., Mohlberg, H., Schormann, T., & Zilles, K. (2000). Brodmann’s Areas 17 and 18 Brought into Stereotaxic Space—Where and How Variable? NeuroImage, 11(1), 66–84. ", - "doi": "10.1006/nimg.1999.0516" - } - ], - "activity": [ - { - "protocols": [ - "histology" - ], - "preparation": [ - "Ex vivo" - ] - }, - { - "protocols": [ - "imaging" - ], - "preparation": [ - "Ex vivo" - ] - }, - { - "protocols": [ - "brain mapping" - ], - "preparation": [ - "Ex vivo" - ] - } - ], - "referenceSpaces": [ - { - "name": null, - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/referencespace/v1.0.0/dafcffc5-4826-4bf1-8ff6-46b8a31ff8e2" - }, - { - "name": "MNI Colin 27", - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/referencespace/v1.0.0/7f39f7be-445b-47c0-9791-e971c0b6d992" - } - ], - "methods": [ - "silver staining", - "magnetic resonance imaging (MRI)", - "probability mapping", - "cytoarchitectonic mapping" - ], - "custodians": [ - "Amunts, Katrin" - ], - "project": [ - "JuBrain: cytoarchitectonic probabilistic maps of the human brain" - ], - "description": "This dataset contains the distinct architectonic Area hOc1 (V1, 17, CalcS) in the individual, single subject template of the MNI Colin 27 as well as the MNI ICBM 152 2009c nonlinear asymmetric reference space. As part of the JuBrain cytoarchitectonic atlas, the area was identified using cytoarchitectonic analysis on cell-body-stained histological sections of 10 human postmortem brains obtained from the body donor program of the University of Düsseldorf. The results of the cytoarchitectonic analysis were then mapped to both reference spaces, where each voxel was assigned the probability to belong to Area hOc1 (V1, 17, CalcS). The probability map of Area hOc1 (V1, 17, CalcS) are provided in the NifTi format for each brain reference space and hemisphere. The JuBrain atlas relies on a modular, flexible and adaptive framework containing workflows to create the probabilistic brain maps for these structures. Note that methodological improvements and integration of new brain structures may lead to small deviations in earlier released datasets.", - "parcellationAtlas": [ - { - "name": "Jülich Cytoarchitechtonic Brain Atlas (human)", - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579-26", - "id": [ - "deec923ec31a82f89a9c7c76a6fefd6b", - "e2d45e028b6da0f6d9fdb9491a4de80a" - ] - } - ], - "licenseInfo": [ - { - "name": "Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International", - "url": "https://creativecommons.org/licenses/by-nc-sa/4.0/" - } - ], - "embargoStatus": [ - "Free" - ], - "license": [], - "parcellationRegion": [ - { - "species": [], - "name": "Area hOc1 (V1, 17, CalcS)", - "alias": null - } - ], - "species": [ - "Homo sapiens" - ], - "name": "Probabilistic cytoarchitectonic map of Area hOc1 (V1, 17, CalcS) (v2.4)", - "files": [], - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/dataset/v1.0.0/5c669b77-c981-424a-858d-fe9f527dbc07", - "contributors": [ - "Zilles, Karl", - "Schormann, Thorsten", - "Mohlberg, Hartmut", - "Malikovic, Aleksandar", - "Amunts, Katrin" - ], - "id": "5c669b77-c981-424a-858d-fe9f527dbc07", - "kgReference": [ - "10.25493/MXJ6-6DH" - ], - "publications": [ - { - "name": "Brodmann's Areas 17 and 18 Brought into Stereotaxic Space—Where and How Variable?", - "cite": "Amunts, K., Malikovic, A., Mohlberg, H., Schormann, T., & Zilles, K. (2000). Brodmann’s Areas 17 and 18 Brought into Stereotaxic Space—Where and How Variable? NeuroImage, 11(1), 66–84. ", - "doi": "10.1006/nimg.1999.0516" - } - ] - } -] \ No newline at end of file diff --git a/deploy/datasets/testData/hoc1pmap.js b/deploy/datasets/testData/hoc1pmap.js deleted file mode 100644 index 3cd032968..000000000 --- a/deploy/datasets/testData/hoc1pmap.js +++ /dev/null @@ -1,146 +0,0 @@ -module.exports = [ - { - "formats": [ - "NIFTI" - ], - "datasetDOI": [ - { - "cite": "Amunts, K., Malikovic, A., Mohlberg, H., Schormann, T., & Zilles, K. (2000). Brodmann’s Areas 17 and 18 Brought into Stereotaxic Space—Where and How Variable? NeuroImage, 11(1), 66–84. ", - "doi": "10.1006/nimg.1999.0516" - } - ], - "activity": [ - { - "protocols": [ - "histology" - ], - "preparation": [ - "Ex vivo" - ] - }, - { - "protocols": [ - "imaging" - ], - "preparation": [ - "Ex vivo" - ] - }, - { - "protocols": [ - "brain mapping" - ], - "preparation": [ - "Ex vivo" - ] - } - ], - "referenceSpaces": [ - { - "name": null, - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/referencespace/v1.0.0/dafcffc5-4826-4bf1-8ff6-46b8a31ff8e2" - }, - { - "name": "MNI Colin 27", - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/referencespace/v1.0.0/7f39f7be-445b-47c0-9791-e971c0b6d992" - } - ], - "methods": [ - "silver staining", - "magnetic resonance imaging (MRI)", - "probability mapping", - "cytoarchitectonic mapping" - ], - "custodians": [ - "Amunts, Katrin" - ], - "project": [ - "JuBrain: cytoarchitectonic probabilistic maps of the human brain" - ], - "description": "This dataset contains the distinct architectonic Area hOc1 (V1, 17, CalcS) in the individual, single subject template of the MNI Colin 27 as well as the MNI ICBM 152 2009c nonlinear asymmetric reference space. As part of the JuBrain cytoarchitectonic atlas, the area was identified using cytoarchitectonic analysis on cell-body-stained histological sections of 10 human postmortem brains obtained from the body donor program of the University of Düsseldorf. The results of the cytoarchitectonic analysis were then mapped to both reference spaces, where each voxel was assigned the probability to belong to Area hOc1 (V1, 17, CalcS). The probability map of Area hOc1 (V1, 17, CalcS) are provided in the NifTi format for each brain reference space and hemisphere. The JuBrain atlas relies on a modular, flexible and adaptive framework containing workflows to create the probabilistic brain maps for these structures. Note that methodological improvements and integration of new brain structures may lead to small deviations in earlier released datasets.", - "parcellationAtlas": [ - { - "name": "Jülich Cytoarchitechtonic Brain Atlas (human)", - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579", - "id": [ - "deec923ec31a82f89a9c7c76a6fefd6b", - "e2d45e028b6da0f6d9fdb9491a4de80a" - ] - } - ], - "licenseInfo": [ - { - "name": "Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International", - "url": "https://creativecommons.org/licenses/by-nc-sa/4.0/" - } - ], - "embargoStatus": [ - "Free" - ], - "license": [], - "parcellationRegion": [ - { - "species": [], - "name": "Area hOc1 (V1, 17, CalcS)", - "alias": null, - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationregion/v1.0.0/5151ab8f-d8cb-4e67-a449-afe2a41fb007" - } - ], - "species": [ - "Homo sapiens" - ], - "name": "Probabilistic cytoarchitectonic map of Area hOc1 (V1, 17, CalcS) (v2.4)", - "files": [ - { - "byteSize": 199561, - "name": "Area-hOc1_r_N10_nlin2Stdcolin27_2.4_publicP_b3b742528b1d1a933c89b2604d23028d.nii.gz", - "absolutePath": "https://object.cscs.ch/v1/AUTH_227176556f3c4bb38df9feea4b91200c/hbp-d000001_jubrain-cytoatlas-Area-hOc1_pub/2.4/Area-hOc1_r_N10_nlin2Stdcolin27_2.4_publicP_b3b742528b1d1a933c89b2604d23028d.nii.gz", - "contentType": "application/octet-stream" - }, - { - "byteSize": 217968, - "name": "Area-hOc1_l_N10_nlin2Stdcolin27_2.4_publicP_788fe1ea663b1fa4e7e9a8b5cf26c5d6.nii.gz", - "absolutePath": "https://object.cscs.ch/v1/AUTH_227176556f3c4bb38df9feea4b91200c/hbp-d000001_jubrain-cytoatlas-Area-hOc1_pub/2.4/Area-hOc1_l_N10_nlin2Stdcolin27_2.4_publicP_788fe1ea663b1fa4e7e9a8b5cf26c5d6.nii.gz", - "contentType": "application/octet-stream" - }, - { - "byteSize": 188966, - "name": "Area-hOc1_l_N10_nlin2MNI152ASYM2009C_2.4_publicP_d3045ee3c0c4de9820eb1516d2cc72bb.nii.gz", - "absolutePath": "https://object.cscs.ch/v1/AUTH_227176556f3c4bb38df9feea4b91200c/hbp-d000001_jubrain-cytoatlas-Area-hOc1_pub/2.4/Area-hOc1_l_N10_nlin2MNI152ASYM2009C_2.4_publicP_d3045ee3c0c4de9820eb1516d2cc72bb.nii.gz", - "contentType": "application/octet-stream" - }, - { - "byteSize": 181550, - "name": "Area-hOc1_r_N10_nlin2MNI152ASYM2009C_2.4_publicP_a48ca5d938781ebaf1eaa25f59df74d0.nii.gz", - "absolutePath": "https://object.cscs.ch/v1/AUTH_227176556f3c4bb38df9feea4b91200c/hbp-d000001_jubrain-cytoatlas-Area-hOc1_pub/2.4/Area-hOc1_r_N10_nlin2MNI152ASYM2009C_2.4_publicP_a48ca5d938781ebaf1eaa25f59df74d0.nii.gz", - "contentType": "application/octet-stream" - }, - { - "byteSize": 20, - "name": "subjects_Area-hOc1.csv", - "absolutePath": "https://object.cscs.ch/v1/AUTH_227176556f3c4bb38df9feea4b91200c/hbp-d000001_jubrain-cytoatlas-Area-hOc1_pub/subjects_Area-hOc1.csv", - "contentType": "text/csv" - } - ], - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/dataset/v1.0.0/5c669b77-c981-424a-858d-fe9f527dbc07", - "contributors": [ - "Zilles, Karl", - "Schormann, Thorsten", - "Mohlberg, Hartmut", - "Malikovic, Aleksandar", - "Amunts, Katrin" - ], - "id": "5c669b77-c981-424a-858d-fe9f527dbc07", - "kgReference": [ - "10.25493/MXJ6-6DH" - ], - "publications": [ - { - "name": "Brodmann's Areas 17 and 18 Brought into Stereotaxic Space—Where and How Variable?", - "cite": "Amunts, K., Malikovic, A., Mohlberg, H., Schormann, T., & Zilles, K. (2000). Brodmann’s Areas 17 and 18 Brought into Stereotaxic Space—Where and How Variable? NeuroImage, 11(1), 66–84. ", - "doi": "10.1006/nimg.1999.0516" - } - ], - "preview": true - } -] \ No newline at end of file diff --git a/deploy/datasets/testData/humanReceptor.js b/deploy/datasets/testData/humanReceptor.js deleted file mode 100644 index 6a0c2c2f5..000000000 --- a/deploy/datasets/testData/humanReceptor.js +++ /dev/null @@ -1,115 +0,0 @@ -module.exports = [ - { - "formats": [ - "xlsx, tif, txt" - ], - "datasetDOI": [ - { - "cite": "Eickhoff, S. B., Schleicher, A., Scheperjans, F., Palomero-Gallagher, N., & Zilles, K. (2007). Analysis of neurotransmitter receptor distribution patterns in the cerebral cortex. NeuroImage, 34(4), 1317–1330. ", - "doi": "10.1016/j.neuroimage.2006.11.016" - }, - { - "cite": "Zilles, K., Bacha-Trams, M., Palomero-Gallagher, N., Amunts, K., & Friederici, A. D. (2015). Common molecular basis of the sentence comprehension network revealed by neurotransmitter receptor fingerprints. Cortex, 63, 79–89. ", - "doi": "10.1016/j.cortex.2014.07.007" - } - ], - "activity": [ - { - "protocols": [ - "brain mapping" - ], - "preparation": [ - "Ex vivo" - ] - }, - { - "protocols": [ - "histology" - ], - "preparation": [ - "Ex vivo" - ] - } - ], - "referenceSpaces": [], - "methods": [ - "receptor autoradiography plot", - "receptor density fingerprint analysis", - "receptor density profile analysis", - "autoradiography with [³H] SCH23390", - "autoradiography with [³H] ketanserin", - "autoradiography with [³H] 8-OH-DPAT", - "autoradiography with [³H] UK-14,304", - "autoradiography with [³H] epibatidine", - "autoradiography with [³H] 4-DAMP", - "autoradiography with [³H] oxotremorine-M", - "autoradiography with [³H] flumazenil", - "autoradiography with [³H] CGP 54626", - "autoradiography with [³H] prazosin", - "autoradiography with [³H] muscimol", - "autoradiography with [³H]LY 341 495", - "autoradiography with [³H] pirenzepine", - "autoradiography with [³H] MK-801", - "autoradiography with [³H] kainate", - "autoradiography with [³H] AMPA" - ], - "custodians": [ - "Palomero-Gallagher, Nicola", - "Zilles, Karl" - ], - "project": [ - "Quantitative Receptor data" - ], - "description": "This dataset contains the densities (in fmol/mg protein) of 16 receptors for classical neurotransmitters in Area hOc1 using quantitative in vitro autoradiography. The receptor density measurements can be provided in three ways: (fp) as density fingerprints (average across samples; mean density and standard deviation for each of the 16 receptors), (pr) as laminar density profiles (exemplary data from one sample; average course of the density from the pial surface to the border between layer VI and the white matter for each receptor), and (ar) as color-coded autoradiographs (exemplary data from one sample; laminar density distribution patterns for each receptor labeling). \nThis dataset contains the following receptor density measurements based on the labeling of these receptor binding sites: \n\nAMPA (glutamate; labelled with [³H]AMPA): fp, pr, ar\n\nkainate (glutamate; [³H]kainate): fp, pr, ar\n\nNMDA (glutamate; [³H]MK-801): fp, pr, ar\n\nmGluR2/3 (glutamate; [³H] LY 341 495): pr, ar\n\nGABA<sub>A</sub> (GABA; [³H]muscimol): fp, pr, ar\n\nGABA<sub>B</sub> (GABA; [³H] CGP54626): fp, pr, ar\n\nGABA<sub>A</sub> associated benzodiazepine binding sites (BZ; [³H]flumazenil): fp, pr, ar\n\nmuscarinic Mâ‚ (acetylcholine; [³H]pirenzepine): fp, pr, ar\n\nmuscarinic Mâ‚‚ (acetylcholine; [³H]oxotremorine-M): fp, pr, ar\n\nmuscarinic M₃ (acetylcholine; [³H]4-DAMP): fp, pr, ar\n\nnicotinic α₄β₂ (acetylcholine; [³H]epibatidine): fp, pr, ar\n\nα₠(noradrenalin; [³H]prazosin): fp, pr, ar\n\nα₂ (noradrenalin; [³H]UK-14,304): fp, pr, ar\n\n5-HTâ‚<sub>A</sub> (serotonin; [³H]8-OH-DPAT): fp, pr, ar\n\n5-HTâ‚‚ (serotonin; [³H]ketanserin): fp, pr, ar\n\nDâ‚ (dopamine; [³H]SCH23390): fp, pr, ar\n\nWhich sample was used for which receptor density measurement is stated in metadata files accompanying the main data repository. For methodological details, see Zilles et al. (2002), and in Palomero-Gallagher and Zilles (2018).\n\nZilles, K. et al. (2002). Quantitative analysis of cyto- and receptorarchitecture of the human brain, pp. 573-602. In: Brain Mapping: The Methods, 2nd edition (A.W. Toga and J.C. Mazziotta, eds.). San Diego, Academic Press.\n\nPalomero-Gallagher N, Zilles K. (2018) Cyto- and receptorarchitectonic mapping of the human brain. In: Handbook of Clinical Neurology 150: 355-387", - "parcellationAtlas": [], - "licenseInfo": [ - { - "name": "Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International", - "url": "https://creativecommons.org/licenses/by-nc-sa/4.0/" - } - ], - "embargoStatus": [ - "Free" - ], - "license": [], - "parcellationRegion": [ - { - "species": [], - "name": "Area hOc1", - "alias": null - } - ], - "species": [ - "Homo sapiens" - ], - "name": "Density measurements of different receptors for Area hOc1", - "files": [], - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/dataset/v1.0.0/e715e1f7-2079-45c4-a67f-f76b102acfce", - "contributors": [ - "Scheperjans, Filip", - "Schleicher, Axel", - "Eickhoff, Simon B.", - "Friederici, Angela D.", - "Amunts, Katrin", - "Palomero-Gallagher, Nicola", - "Bacha-Trams, Maraike", - "Zilles, Karl" - ], - "id": "0616d1e97b8be75de526bc265d9af540", - "kgReference": [ - "10.25493/P8SD-JMH" - ], - "publications": [ - { - "name": "Analysis of neurotransmitter receptor distribution patterns in the cerebral cortex", - "cite": "Eickhoff, S. B., Schleicher, A., Scheperjans, F., Palomero-Gallagher, N., & Zilles, K. (2007). Analysis of neurotransmitter receptor distribution patterns in the cerebral cortex. NeuroImage, 34(4), 1317–1330. ", - "doi": "10.1016/j.neuroimage.2006.11.016" - }, - { - "name": "Common molecular basis of the sentence comprehension network revealed by neurotransmitter receptor fingerprints", - "cite": "Zilles, K., Bacha-Trams, M., Palomero-Gallagher, N., Amunts, K., & Friederici, A. D. (2015). Common molecular basis of the sentence comprehension network revealed by neurotransmitter receptor fingerprints. Cortex, 63, 79–89. ", - "doi": "10.1016/j.cortex.2014.07.007" - } - ] - } -] \ No newline at end of file diff --git a/deploy/datasets/testData/ibcData.md b/deploy/datasets/testData/ibcData.md deleted file mode 100644 index 877fcd0a2..000000000 --- a/deploy/datasets/testData/ibcData.md +++ /dev/null @@ -1,24 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hIP1 (IPS) of the left hemisphere - -Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -The following measurements show a particularly strong activation in Area hIP1 (IPS) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-05 | ses-04 | task-archi_emotional_dir-ap_face_trusty| -| sub-05 | ses-04 | dir-ap_face_trusty| -| sub-07 | ses-11 | sn_before-after_event| -| sub-07 | ses-04 | dir-ap_reading-checkerboard| -| sub-07 | ses-04 | task-archi_standard_dir-ap_reading-checkerboard| -| sub-06 | ses-01 | task-hcp_gambling_dir-ap_punishment-reward| -| sub-06 | ses-01 | dir-ap_punishment-reward| -| sub-07 | ses-12 | task-mtt_we_dir-ap_run-03_we_before-after_event| -| sub-07 | ses-12 | dir-ap_run-03_we_before-after_event| -| sub-07 | ses-12 | we_before-after_event| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. diff --git a/deploy/datasets/testData/ibcDataExpected.js b/deploy/datasets/testData/ibcDataExpected.js deleted file mode 100644 index 1837c2c47..000000000 --- a/deploy/datasets/testData/ibcDataExpected.js +++ /dev/null @@ -1,58 +0,0 @@ -module.exports = { - name: 'Individual Brain Charting fMRI datasets with strong activation in Area hIP1 (IPS) of the left hemisphere\n\n', - kgReference: ['https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f\n\n'], - description: 'The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain.\n' + - 'Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f\n' + - '\n' + - 'Following are the 10 measurements with the strongest activation in Area hIP1 (IPS) of the left hemisphere:\n' + - '\n' + - '| Subject ID | Session ID | Task |\n' + - '| --- | --- | --- |\n' + - '| sub-05 | ses-04 | task-archi_emotional_dir-ap_face_trusty|\n' + - '| sub-05 | ses-04 | dir-ap_face_trusty|\n' + - '| sub-07 | ses-11 | sn_before-after_event|\n' + - '| sub-07 | ses-04 | dir-ap_reading-checkerboard|\n' + - '| sub-07 | ses-04 | task-archi_standard_dir-ap_reading-checkerboard|\n' + - '| sub-06 | ses-01 | task-hcp_gambling_dir-ap_punishment-reward|\n' + - '| sub-06 | ses-01 | dir-ap_punishment-reward|\n' + - '| sub-07 | ses-12 | task-mtt_we_dir-ap_run-03_we_before-after_event|\n' + - '| sub-07 | ses-12 | dir-ap_run-03_we_before-after_event|\n' + - '| sub-07 | ses-12 | we_before-after_event|\n' + - '\n' + - '\n' + - 'The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here.', - methods: ['functional magnetic resonance imaging (fMRI)'], - species: ['Homo sapiens'], - fullId: `https://ibc/ibc_schema/left_AIPS_IP1.md`, - kgId: 'left_AIPS_IP1.md', - kgSchema: '//ibc/ibc_schema', - referenceSpaces: [ - { - "name": null, - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/referencespace/v1.0.0/dafcffc5-4826-4bf1-8ff6-46b8a31ff8e2" - }, - { - "name": "MNI Colin 27", - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/referencespace/v1.0.0/7f39f7be-445b-47c0-9791-e971c0b6d992" - } - ], - parcellationAtlas: [ - { - name: 'Jülich Cytoarchitechtonic Brain Atlas (human)', - fullId: - 'https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579' - }], - parcellationRegion: [ - { - species: [], - name: 'Area hIP1 (IPS)', - alias: null, - fullId: 'https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationregion/v1.0.0/7722c71f-fe84-4deb-8f6b-98e2aecf2e31' - } - ], - embargoStatus: [{ - '@id': 'https://nexus.humanbrainproject.org/v0/data/minds/core/embargostatus/v1.0.0/1d726b76-b176-47ed-96f0-b4f2e17d5f19' - }] -} - - diff --git a/deploy/datasets/testData/mni152JuBrain.js b/deploy/datasets/testData/mni152JuBrain.js deleted file mode 100644 index 4cfe826de..000000000 --- a/deploy/datasets/testData/mni152JuBrain.js +++ /dev/null @@ -1,337 +0,0 @@ -module.exports = [ - { - "formats": [ - "NIFTI" - ], - "datasetDOI": [ - { - "cite": "Amunts, K., Malikovic, A., Mohlberg, H., Schormann, T., & Zilles, K. (2000). Brodmann’s Areas 17 and 18 Brought into Stereotaxic Space—Where and How Variable? NeuroImage, 11(1), 66–84. ", - "doi": "10.1006/nimg.1999.0516" - } - ], - "activity": [ - { - "protocols": [ - "histology" - ], - "preparation": [ - "Ex vivo" - ] - }, - { - "protocols": [ - "imaging" - ], - "preparation": [ - "Ex vivo" - ] - }, - { - "protocols": [ - "brain mapping" - ], - "preparation": [ - "Ex vivo" - ] - } - ], - "referenceSpaces": [ - { - "name": null, - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/referencespace/v1.0.0/dafcffc5-4826-4bf1-8ff6-46b8a31ff8e2" - }, - { - "name": "MNI Colin 27", - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/referencespace/v1.0.0/7f39f7be-445b-47c0-9791-e971c0b6d992" - } - ], - "methods": [ - "silver staining", - "magnetic resonance imaging (MRI)", - "probability mapping", - "cytoarchitectonic mapping" - ], - "custodians": [ - "Amunts, Katrin" - ], - "project": [ - "JuBrain: cytoarchitectonic probabilistic maps of the human brain" - ], - "description": "This dataset contains the distinct architectonic Area hOc1 (V1, 17, CalcS) in the individual, single subject template of the MNI Colin 27 as well as the MNI ICBM 152 2009c nonlinear asymmetric reference space. As part of the JuBrain cytoarchitectonic atlas, the area was identified using cytoarchitectonic analysis on cell-body-stained histological sections of 10 human postmortem brains obtained from the body donor program of the University of Düsseldorf. The results of the cytoarchitectonic analysis were then mapped to both reference spaces, where each voxel was assigned the probability to belong to Area hOc1 (V1, 17, CalcS). The probability map of Area hOc1 (V1, 17, CalcS) are provided in the NifTi format for each brain reference space and hemisphere. The JuBrain atlas relies on a modular, flexible and adaptive framework containing workflows to create the probabilistic brain maps for these structures. Note that methodological improvements and integration of new brain structures may lead to small deviations in earlier released datasets.", - "parcellationAtlas": [ - { - "name": "Jülich Cytoarchitechtonic Brain Atlas (human)", - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579", - "id": [ - "deec923ec31a82f89a9c7c76a6fefd6b", - "e2d45e028b6da0f6d9fdb9491a4de80a" - ] - } - ], - "licenseInfo": [ - { - "name": "Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International", - "url": "https://creativecommons.org/licenses/by-nc-sa/4.0/" - } - ], - "embargoStatus": [ - "Free" - ], - "license": [], - "parcellationRegion": [ - { - "species": [], - "name": "Area hOc1 (V1, 17, CalcS)", - "alias": null, - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationregion/v1.0.0/5151ab8f-d8cb-4e67-a449-afe2a41fb007" - } - ], - "species": [ - "Homo sapiens" - ], - "name": "Probabilistic cytoarchitectonic map of Area hOc1 (V1, 17, CalcS) (v2.4)", - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/dataset/v1.0.0/5c669b77-c981-424a-858d-fe9f527dbc07", - "contributors": [ - "Zilles, Karl", - "Schormann, Thorsten", - "Mohlberg, Hartmut", - "Malikovic, Aleksandar", - "Amunts, Katrin" - ], - "id": "5c669b77-c981-424a-858d-fe9f527dbc07", - "kgReference": [ - "10.25493/MXJ6-6DH" - ], - "publications": [ - { - "name": "Brodmann's Areas 17 and 18 Brought into Stereotaxic Space—Where and How Variable?", - "cite": "Amunts, K., Malikovic, A., Mohlberg, H., Schormann, T., & Zilles, K. (2000). Brodmann’s Areas 17 and 18 Brought into Stereotaxic Space—Where and How Variable? NeuroImage, 11(1), 66–84. ", - "doi": "10.1006/nimg.1999.0516" - } - ] - },{ - "formats": [ - "xlsx, tif, txt" - ], - "datasetDOI": [ - { - "cite": "Eickhoff, S. B., Schleicher, A., Scheperjans, F., Palomero-Gallagher, N., & Zilles, K. (2007). Analysis of neurotransmitter receptor distribution patterns in the cerebral cortex. NeuroImage, 34(4), 1317–1330. ", - "doi": "10.1016/j.neuroimage.2006.11.016" - }, - { - "cite": "Zilles, K., Bacha-Trams, M., Palomero-Gallagher, N., Amunts, K., & Friederici, A. D. (2015). Common molecular basis of the sentence comprehension network revealed by neurotransmitter receptor fingerprints. Cortex, 63, 79–89. ", - "doi": "10.1016/j.cortex.2014.07.007" - } - ], - "activity": [ - { - "protocols": [ - "brain mapping" - ], - "preparation": [ - "Ex vivo" - ] - }, - { - "protocols": [ - "histology" - ], - "preparation": [ - "Ex vivo" - ] - } - ], - "referenceSpaces": [], - "methods": [ - "receptor autoradiography plot", - "receptor density fingerprint analysis", - "receptor density profile analysis", - "autoradiography with [³H] SCH23390", - "autoradiography with [³H] ketanserin", - "autoradiography with [³H] 8-OH-DPAT", - "autoradiography with [³H] UK-14,304", - "autoradiography with [³H] epibatidine", - "autoradiography with [³H] 4-DAMP", - "autoradiography with [³H] oxotremorine-M", - "autoradiography with [³H] flumazenil", - "autoradiography with [³H] CGP 54626", - "autoradiography with [³H] prazosin", - "autoradiography with [³H] muscimol", - "autoradiography with [³H]LY 341 495", - "autoradiography with [³H] pirenzepine", - "autoradiography with [³H] MK-801", - "autoradiography with [³H] kainate", - "autoradiography with [³H] AMPA" - ], - "custodians": [ - "Palomero-Gallagher, Nicola", - "Zilles, Karl" - ], - "project": [ - "Quantitative Receptor data" - ], - "description": "This dataset contains the densities (in fmol/mg protein) of 16 receptors for classical neurotransmitters in Area hOc1 using quantitative in vitro autoradiography. The receptor density measurements can be provided in three ways: (fp) as density fingerprints (average across samples; mean density and standard deviation for each of the 16 receptors), (pr) as laminar density profiles (exemplary data from one sample; average course of the density from the pial surface to the border between layer VI and the white matter for each receptor), and (ar) as color-coded autoradiographs (exemplary data from one sample; laminar density distribution patterns for each receptor labeling). \nThis dataset contains the following receptor density measurements based on the labeling of these receptor binding sites: \n\nAMPA (glutamate; labelled with [³H]AMPA): fp, pr, ar\n\nkainate (glutamate; [³H]kainate): fp, pr, ar\n\nNMDA (glutamate; [³H]MK-801): fp, pr, ar\n\nmGluR2/3 (glutamate; [³H] LY 341 495): pr, ar\n\nGABA<sub>A</sub> (GABA; [³H]muscimol): fp, pr, ar\n\nGABA<sub>B</sub> (GABA; [³H] CGP54626): fp, pr, ar\n\nGABA<sub>A</sub> associated benzodiazepine binding sites (BZ; [³H]flumazenil): fp, pr, ar\n\nmuscarinic Mâ‚ (acetylcholine; [³H]pirenzepine): fp, pr, ar\n\nmuscarinic Mâ‚‚ (acetylcholine; [³H]oxotremorine-M): fp, pr, ar\n\nmuscarinic M₃ (acetylcholine; [³H]4-DAMP): fp, pr, ar\n\nnicotinic α₄β₂ (acetylcholine; [³H]epibatidine): fp, pr, ar\n\nα₠(noradrenalin; [³H]prazosin): fp, pr, ar\n\nα₂ (noradrenalin; [³H]UK-14,304): fp, pr, ar\n\n5-HTâ‚<sub>A</sub> (serotonin; [³H]8-OH-DPAT): fp, pr, ar\n\n5-HTâ‚‚ (serotonin; [³H]ketanserin): fp, pr, ar\n\nDâ‚ (dopamine; [³H]SCH23390): fp, pr, ar\n\nWhich sample was used for which receptor density measurement is stated in metadata files accompanying the main data repository. For methodological details, see Zilles et al. (2002), and in Palomero-Gallagher and Zilles (2018).\n\nZilles, K. et al. (2002). Quantitative analysis of cyto- and receptorarchitecture of the human brain, pp. 573-602. In: Brain Mapping: The Methods, 2nd edition (A.W. Toga and J.C. Mazziotta, eds.). San Diego, Academic Press.\n\nPalomero-Gallagher N, Zilles K. (2018) Cyto- and receptorarchitectonic mapping of the human brain. In: Handbook of Clinical Neurology 150: 355-387", - "parcellationAtlas": [], - "licenseInfo": [ - { - "name": "Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International", - "url": "https://creativecommons.org/licenses/by-nc-sa/4.0/" - } - ], - "embargoStatus": [ - "Free" - ], - "license": [], - "parcellationRegion": [ - { - "species": [], - "name": "Area hOc1 (V1, 17, CalcS)", - "alias": null, - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationregion/v1.0.0/5151ab8f-d8cb-4e67-a449-afe2a41fb007" - } - ], - "species": [ - "Homo sapiens" - ], - "name": "Density measurements of different receptors for Area hOc1", - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/dataset/v1.0.0/e715e1f7-2079-45c4-a67f-f76b102acfce", - "contributors": [ - "Scheperjans, Filip", - "Schleicher, Axel", - "Eickhoff, Simon B.", - "Friederici, Angela D.", - "Amunts, Katrin", - "Palomero-Gallagher, Nicola", - "Bacha-Trams, Maraike", - "Zilles, Karl" - ], - "id": "0616d1e97b8be75de526bc265d9af540", - "kgReference": [ - "10.25493/P8SD-JMH" - ], - "publications": [ - { - "name": "Analysis of neurotransmitter receptor distribution patterns in the cerebral cortex", - "cite": "Eickhoff, S. B., Schleicher, A., Scheperjans, F., Palomero-Gallagher, N., & Zilles, K. (2007). Analysis of neurotransmitter receptor distribution patterns in the cerebral cortex. NeuroImage, 34(4), 1317–1330. ", - "doi": "10.1016/j.neuroimage.2006.11.016" - }, - { - "name": "Common molecular basis of the sentence comprehension network revealed by neurotransmitter receptor fingerprints", - "cite": "Zilles, K., Bacha-Trams, M., Palomero-Gallagher, N., Amunts, K., & Friederici, A. D. (2015). Common molecular basis of the sentence comprehension network revealed by neurotransmitter receptor fingerprints. Cortex, 63, 79–89. ", - "doi": "10.1016/j.cortex.2014.07.007" - } - ] - },{ - "formats": [ - "xlsx, tif, txt" - ], - "datasetDOI": [ - { - "cite": "Amunts, K., Lenzen, M., Friederici, A. D., Schleicher, A., Morosan, P., Palomero-Gallagher, N., & Zilles, K. (2010). Broca’s Region: Novel Organizational Principles and Multiple Receptor Mapping. PLoS Biology, 8(9), e1000489. ", - "doi": "10.1371/journal.pbio.1000489" - }, - { - "cite": "Zilles, K., Bacha-Trams, M., Palomero-Gallagher, N., Amunts, K., & Friederici, A. D. (2015). Common molecular basis of the sentence comprehension network revealed by neurotransmitter receptor fingerprints. Cortex, 63, 79–89. ", - "doi": "10.1016/j.cortex.2014.07.007" - } - ], - "activity": [ - { - "protocols": [ - "brain mapping" - ], - "preparation": [ - "Ex vivo" - ] - }, - { - "protocols": [ - "histology" - ], - "preparation": [ - "Ex vivo" - ] - } - ], - "referenceSpaces": [], - "methods": [ - "receptor autoradiography plot", - "receptor density fingerprint analysis", - "receptor density profile analysis", - "autoradiography with [³H] SCH23390", - "autoradiography with [³H] ketanserin", - "autoradiography with [³H] 8-OH-DPAT", - "autoradiography with [³H] UK-14,304", - "autoradiography with [³H] epibatidine", - "autoradiography with [³H] 4-DAMP", - "autoradiography with [³H] oxotremorine-M", - "autoradiography with [³H] flumazenil", - "autoradiography with [³H] CGP 54626", - "autoradiography with [³H] prazosin", - "autoradiography with [³H] muscimol", - "autoradiography with [³H]LY 341 495", - "autoradiography with [³H] pirenzepine", - "autoradiography with [³H] MK-801", - "autoradiography with [³H] kainate", - "autoradiography with [³H] AMPA" - ], - "custodians": [ - "Palomero-Gallagher, Nicola", - "Zilles, Karl" - ], - "project": [ - "Quantitative Receptor data" - ], - "description": "This dataset contains the densities (in fmol/mg protein) of 16 receptors for classical neurotransmitters in Area 44d using quantitative in vitro autoradiography. The receptor density measurements can be provided in three ways: (fp) as density fingerprints (average across samples; mean density and standard deviation for each of the 16 receptors), (pr) as laminar density profiles (exemplary data from one sample; average course of the density from the pial surface to the border between layer VI and the white matter for each receptor), and (ar) as color-coded autoradiographs (exemplary data from one sample; laminar density distribution patterns for each receptor labeling). \nThis dataset contains the following receptor density measurements based on the labeling of these receptor binding sites: \n\nAMPA (glutamate; labelled with [³H]AMPA): fp, pr, ar\n\nkainate (glutamate; [³H]kainate): fp, pr, ar\n\nNMDA (glutamate; [³H]MK-801): fp, pr, ar\n\nmGluR2/3 (glutamate; [³H] LY 341 495): pr, ar\n\nGABA<sub>A</sub> (GABA; [³H]muscimol): fp, pr, ar\n\nGABA<sub>B</sub> (GABA; [³H] CGP54626): fp, pr, ar\n\nGABA<sub>A</sub> associated benzodiazepine binding sites (BZ; [³H]flumazenil): fp, pr, ar\n\nmuscarinic Mâ‚ (acetylcholine; [³H]pirenzepine): fp, pr, ar\n\nmuscarinic Mâ‚‚ (acetylcholine; [³H]oxotremorine-M): fp, pr, ar\n\nmuscarinic M₃ (acetylcholine; [³H]4-DAMP): fp, pr, ar\n\nnicotinic α₄β₂ (acetylcholine; [³H]epibatidine): fp, pr, ar\n\nα₠(noradrenalin; [³H]prazosin): fp, pr, ar\n\nα₂ (noradrenalin; [³H]UK-14,304): fp, pr, ar\n\n5-HTâ‚<sub>A</sub> (serotonin; [³H]8-OH-DPAT): fp, pr, ar\n\n5-HTâ‚‚ (serotonin; [³H]ketanserin): fp, pr, ar\n\nDâ‚ (dopamine; [³H]SCH23390): fp, pr, ar\n\nWhich sample was used for which receptor density measurement is stated in metadata files accompanying the main data repository. For methodological details, see Zilles et al. (2002), and in Palomero-Gallagher and Zilles (2018).\n\nZilles, K. et al. (2002). Quantitative analysis of cyto- and receptorarchitecture of the human brain, pp. 573-602. In: Brain Mapping: The Methods, 2nd edition (A.W. Toga and J.C. Mazziotta, eds.). San Diego, Academic Press.\n\nPalomero-Gallagher N, Zilles K. (2018) Cyto- and receptorarchitectonic mapping of the human brain. In: Handbook of Clinical Neurology 150: 355-387", - "parcellationAtlas": [], - "licenseInfo": [ - { - "name": "Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International", - "url": "https://creativecommons.org/licenses/by-nc-sa/4.0/" - } - ], - "embargoStatus": [ - "Free" - ], - "license": [], - "parcellationRegion": [ - { - "species": [], - "name": "Area 44 (IFG)", - "alias": null, - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationregion/v1.0.0/8a6be82c-5947-4fff-8348-cf9bf73e4f40" - } - ], - "species": [ - "Homo sapiens" - ], - "name": "Density measurements of different receptors for Area 44d", - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/dataset/v1.0.0/cb875c0d-97f4-4dbc-a9ce-472d8ba58c99", - "contributors": [ - "Morosan, Patricia", - "Schleicher, Axel", - "Lenzen, Marianne", - "Friederici, Angela D.", - "Amunts, Katrin", - "Palomero-Gallagher, Nicola", - "Bacha-Trams, Maraike", - "Zilles, Karl" - ], - "id": "31397abd7aebcf13bf3b1d5eb2e2d400", - "kgReference": [ - "10.25493/YQCR-1DQ" - ], - "publications": [ - { - "name": "Broca's Region: Novel Organizational Principles and Multiple Receptor Mapping", - "cite": "Amunts, K., Lenzen, M., Friederici, A. D., Schleicher, A., Morosan, P., Palomero-Gallagher, N., & Zilles, K. (2010). Broca’s Region: Novel Organizational Principles and Multiple Receptor Mapping. PLoS Biology, 8(9), e1000489. ", - "doi": "10.1371/journal.pbio.1000489" - }, - { - "name": "Common molecular basis of the sentence comprehension network revealed by neurotransmitter receptor fingerprints", - "cite": "Zilles, K., Bacha-Trams, M., Palomero-Gallagher, N., Amunts, K., & Friederici, A. D. (2015). Common molecular basis of the sentence comprehension network revealed by neurotransmitter receptor fingerprints. Cortex, 63, 79–89. ", - "doi": "10.1016/j.cortex.2014.07.007" - } - ] - } -] \ No newline at end of file diff --git a/deploy/datasets/testData/waxholmv2.js b/deploy/datasets/testData/waxholmv2.js deleted file mode 100644 index 91c198d28..000000000 --- a/deploy/datasets/testData/waxholmv2.js +++ /dev/null @@ -1,114 +0,0 @@ -module.exports = [ - { - "formats": [], - "datasetDOI": [ - { - "cite": "Holmseth, S., Scott, H. A., Real, K., Lehre, K. P., Leergaard, T. B., Bjaalie, J. G., & Danbolt, N. C. (2009). The concentrations and distributions of three C-terminal variants of the GLT1 (EAAT2; slc1a2) glutamate transporter protein in rat brain tissue suggest differential regulation. Neuroscience, 162(4), 1055–1071. ", - "doi": "10.1016/j.neuroscience.2009.03.048" - } - ], - "activity": [ - { - "protocols": [ - "Immunohistochemistry", - "Atlas", - "Brain-wide", - "Synaptic transmission", - "Neurtransmitter transport", - "Glutamate uptake", - "GLT1" - ], - "preparation": [ - "Ex vivo" - ] - } - ], - "referenceSpaces": [], - "methods": [ - "Immunohistochemistry" - ], - "custodians": [ - "Danbolt, Niels C." - ], - "project": [ - "Rodent brain neurotransporter atlas: GLT1" - ], - "description": "Glutamate is the major excitatory transmitter in the central nervous system (Danbolt, Prog. Neurobiol. 65:1-105, 2001). It is inactivated by cellular uptake, mostly catalyzed by the glutamate transporters GLT1 (slc1a2, excitatory amino acid transporter [EAAT2]) subtype expressed at high levels in brain astrocytes and at lower levels in neurons. Three C-terminal variants of EAAT2 exist: GLT1a (Pines et al., Nature 360:464-467, 1992), GLT1b (Utsunomiya-Tate et al., FEBS Lett 416:312-326,1997), and GLT1c (Rauen et al., Neurochem. Int. 45:1095-1106, 2004). This dataset is brain-wide collection of microscopic images showing the brain-wide distribution of GLT1 in the mouse and rat brain, visualized by immunohistochemistry using antibodies against GLT1a and GLT1b. To facilitate identification of anatomical location adjacent section were stained to reveal cyto- and myeloarchitecture.", - "parcellationAtlas": [ - { - "name": "Allen Mouse Common Coordinate Framework v3 2015", - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationatlas/v1.0.0/39a1384b-8413-4d27-af8d-22432225401f", - "id": "39a1384b-8413-4d27-af8d-22432225401f" - }, - { - "name": "Waxholm Space rat brain atlas v2", - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationatlas/v1.0.0/2449a7f0-6dd0-4b5a-8f1e-aec0db03679d", - "id": "2449a7f0-6dd0-4b5a-8f1e-aec0db03679d" - } - ], - "licenseInfo": [ - { - "name": "Creative Commons Attribution-ShareAlike 4.0 International", - "url": "https://creativecommons.org/licenses/by-sa/4.0" - } - ], - "embargoStatus": [ - "Free" - ], - "license": [ - { - "name": "Creative Commons Attribution-ShareAlike 4.0 International", - "relativeUrl": "minds/core/licensetype/v1.0.0/78a3bfb2-f4b9-40f0-869c-34b5e48a45bd" - } - ], - "parcellationRegion": [ - { - "species": [], - "name": "Mouse Whole brain (v3 2015)", - "alias": "Whole brain", - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationregion/v1.0.0/2bdfac7a-b38c-4c55-9843-0b56cb90bb67" - }, - { - "species": [ - { - "identifier": [ - "e9a384ea8a4edf817710b6edef5f2940", - "5401fdb1d638c2bc5b68241560cddac0" - ], - "name": "Rattus norvegicus", - "@id": "https://nexus.humanbrainproject.org/v0/data/minds/core/species/v1.0.0/f3490d7f-8f7f-4b40-b238-963dcac84412" - } - ], - "name": "Rat Whole brain (v2)", - "alias": "Whole brain", - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationregion/v1.0.0/b2b56201-472c-4f70-842f-cf2133eacaba" - } - ], - "species": [ - "Rattus norvegicus", - "Mus musculus" - ], - "name": "Brain-wide distribution of glutamate type 1 transporter protein (GLT1)", - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/dataset/v1.0.0/f7a7d460-8724-4cd1-a06e-457eb8954fbd", - "contributors": [ - "Danbolt, Nils C.", - "Bjaalie, Jan G.", - "Leergaard, Trygve B.", - "Lehre, K.P.", - "Real, Katia", - "Scott, Heather A.", - "Holmseth, Silvia" - ], - "id": "63bbb845ac6d2f1839f919c2ef0455bc", - "kgReference": [ - "10.25493/Y147-2CE" - ], - "publications": [ - { - "name": "The concentrations and distributions of three C-terminal variants of the GLT1 (EAAT2; slc1a2) glutamate transporter protein in rat brain tissue suggest differential regulation", - "cite": "Holmseth, S., Scott, H. A., Real, K., Lehre, K. P., Leergaard, T. B., Bjaalie, J. G., & Danbolt, N. C. (2009). The concentrations and distributions of three C-terminal variants of the GLT1 (EAAT2; slc1a2) glutamate transporter protein in rat brain tissue suggest differential regulation. Neuroscience, 162(4), 1055–1071. ", - "doi": "10.1016/j.neuroscience.2009.03.048" - } - ] - } -] \ No newline at end of file diff --git a/deploy/datasets/util.js b/deploy/datasets/util.js deleted file mode 100644 index 48620a093..000000000 --- a/deploy/datasets/util.js +++ /dev/null @@ -1,417 +0,0 @@ -const { getPublicAccessToken: getPublic } = require('./../auth/util') -const { getCommonSenseDsFilter } = require('./supplements/commonSense') -const { hasPreview } = require('./supplements/previewFile') -const path = require('path') -const fs = require('fs') -const { getIdFromFullId, retry, flattenRegions, getUniqueRegionId, getStringIdsFromRegion, flattenReducer } = require('../../common/util') - -let getPublicAccessToken - -const KG_IDS = { - PARCELLATIONS: { - LONG_BUNDLE: 'juelich/iav/atlas/v1.0.0/5', - SHORT_BUNDLE: 'juelich/iav/atlas/v1.0.0/6', - JULICH_BRAIN: 'minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579', - JULICH_BRAIN_V25: 'minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579-26', - JULICH_BRAIN_V24_BIGBRAIN: 'juelich/iav/atlas/v1.0.0/7' - } -} - -const getUserKGRequestParam = async ({ user }) => { - let publicAccessToken - /** - * n.b. ACCESS_TOKEN env var is usually only set during dev - * user.type any other than 'hbp-oidc' (v1 of oidc) will result in timeout/error - */ - const accessToken = (user && user.type === 'hbp-oidc' && user.tokenset && user.tokenset.access_token) || process.env.ACCESS_TOKEN - const releasedOnly = !accessToken - if (!accessToken && getPublicAccessToken) { - publicAccessToken = await getPublicAccessToken() - } - const option = accessToken || publicAccessToken - ? { - auth: { bearer: accessToken || publicAccessToken } - } - : {} - - return { - option, - releasedOnly, - token: accessToken || publicAccessToken - } -} - -/** - * Needed by filter by parcellation - */ - -const readConfigFile = (filename) => new Promise((resolve, reject) => { - let filepath - if (process.env.NODE_ENV === 'production') { - filepath = path.join(__dirname, '..', 'res', filename) - } else { - filepath = path.join(__dirname, '..', '..', 'src', 'res', 'ext', filename) - } - fs.readFile(filepath, 'utf-8', (err, data) => { - if (err) reject(err) - resolve(data) - }) -}) - -const populateSet = (flattenedRegions, set = new Set()) => { - if (!(set instanceof Set)) throw `set needs to be an instance of Set` - if (!(flattenedRegions instanceof Array)) throw `flattenedRegions needs to be an instance of Array` - for (const region of flattenedRegions) { - const { name, relatedAreas, fullId } = region - if (fullId) { - set.add( - getIdFromFullId(fullId) - ) - } - if (relatedAreas && Array.isArray(relatedAreas)) { - for (const relatedArea of relatedAreas) { - const { fullId } = relatedArea - set.add( - getIdFromFullId(fullId) - ) - } - } - } - return set -} - -const initPrArray = [] - -/** - * regionMap maps schema/id to { parent, children } - */ -const regionMap = new Map() - -const getParseRegion = (template, parcellation) => { - - const getRegionIdsFromRegion = region => { - return [ - ...getStringIdsFromRegion(region), - getUniqueRegionId(template, parcellation, region) - ] - } - - const parseRegion = (region, parent) => { - const regionIds = getRegionIdsFromRegion(region) - const regionId = regionIds[0] - const { children, relatedAreas } = region - const childrenIds = (children || []).map(getRegionIdsFromRegion).reduce(flattenReducer, []) - const alternateIds = (relatedAreas || []).map(getRegionIdsFromRegion).reduce(flattenReducer, []) - - const regionObj = { - parent, - self: [ ...regionIds, ...alternateIds ], - children: childrenIds - } - regionMap.set(regionId, regionObj) - for (const altId of alternateIds) { - regionMap.set(altId, regionObj) - } - for (const c of (children || [])) { - parseRegion(c, regionId) - } - } - return parseRegion -} - -const processParc = (t, p) => { - const parseRegion = getParseRegion(t, p) - const { regions } = p - for (const r of regions) { - parseRegion(r) - } -} - -let juBrainSet = new Set(), - bigbrainCytoSet = new Set() - shortBundleSet = new Set(), - longBundleSet = new Set(), - waxholm1Set = new Set(), - waxholm2Set = new Set(), - waxholm3Set = new Set(), - allen2015Set = new Set(), - allen2017Set = new Set() - -initPrArray.push( - readConfigFile('bigbrain.json') - .then(data => JSON.parse(data)) - .then(json => { - for (const p of json.parcellations) { - processParc(json, p) - } - const bigbrainCyto = flattenRegions(json.parcellations.find(({ ['@id']: id }) => id === KG_IDS.PARCELLATIONS.JULICH_BRAIN_V24_BIGBRAIN).regions) - bigbrainCytoSet = populateSet(bigbrainCyto) - }) - .catch(console.error) -) - -initPrArray.push( - readConfigFile('MNI152.json') - .then(data => JSON.parse(data)) - .then(json => { - for (const p of json.parcellations) { - processParc(json, p) - } - const longBundle = flattenRegions(json.parcellations.find(({ ['@id']: id }) => id === KG_IDS.PARCELLATIONS.LONG_BUNDLE).regions) - const shortBundle = flattenRegions(json.parcellations.find(({ ['@id']: id }) => id === KG_IDS.PARCELLATIONS.SHORT_BUNDLE).regions) - const jubrain = flattenRegions(json.parcellations.find(({ ['@id']: id }) => id === KG_IDS.PARCELLATIONS.JULICH_BRAIN_V25).regions) - longBundleSet = populateSet(longBundle) - shortBundleSet = populateSet(shortBundle) - juBrainSet = populateSet(jubrain) - }) - .catch(console.error) -) - -initPrArray.push( - readConfigFile('waxholmRatV2_0.json') - .then(data => JSON.parse(data)) - .then(json => { - for (const p of json.parcellations) { - processParc(json, p) - } - const waxholm3 = flattenRegions(json.parcellations[0].regions) - const waxholm2 = flattenRegions(json.parcellations[1].regions) - const waxholm1 = flattenRegions(json.parcellations[2].regions) - - waxholm1Set = populateSet(waxholm1) - waxholm2Set = populateSet(waxholm2) - waxholm3Set = populateSet(waxholm3) - }) - .catch(console.error) -) - -initPrArray.push( - readConfigFile('allenMouse.json') - .then(data => JSON.parse(data)) - .then(json => { - for (const p of json.parcellations) { - processParc(json, p) - } - const flattenedAllen2017 = flattenRegions(json.parcellations[0].regions) - allen2017Set = populateSet(flattenedAllen2017) - - const flattenedAllen2015 = flattenRegions(json.parcellations[1].regions) - allen2015Set = populateSet(flattenedAllen2015) - }) - .catch(console.error) -) - -const datasetRegionExistsInParcellationRegion = async (prs, atlasPrSet = new Set()) => { - if (!(atlasPrSet instanceof Set)) throw `atlasPrSet needs to be a set!` - await Promise.all(initPrArray) - return prs.some(({ fullId }) => atlasPrSet.has( - getIdFromFullId(fullId) - )) -} - -const templateNameToIdMap = new Map([ - ['Big Brain (Histology)', { - kg: { - kgId: 'a1655b99-82f1-420f-a3c2-fe80fd4c8588', - kgSchema: 'minds/core/referencespace/v1.0.0' - } - }], - ['MNI 152 ICBM 2009c Nonlinear Asymmetric', { - kg: { - kgId: 'dafcffc5-4826-4bf1-8ff6-46b8a31ff8e2', - kgSchema: 'minds/core/referencespace/v1.0.0' - } - }], - ['MNI Colin 27', { - kg: { - kgId: '7f39f7be-445b-47c0-9791-e971c0b6d992', - kgSchema: 'minds/core/referencespace/v1.0.0' - } - }] -]) - -const getKgId = ({ templateName }) => { - const out = templateNameToIdMap.get(templateName) - if (!out) return null - const { kg } = out - const { kgSchema, kgId } = kg - return `${kgSchema}/${kgId}` -} - - -/** - * NB: if changed, also change ~/docs/advanced/datasets.md - * @param { templateName } template to be queried - */ -const datasetBelongsInTemplate = ({ templateName }) => ({ referenceSpaces }) => { - return referenceSpaces.some(({ name, fullId }) => - name === templateName - || fullId && fullId.includes(getKgId({ templateName }))) -} - -/** - * NB: if changed, also change ~/docs/advanced/dataset.md - * @param {parcellationName, dataset} param0 - */ -const datasetBelongToParcellation = ({ parcellationName = null, dataset = {parcellationAtlas: []} } = {}) => parcellationName === null || dataset.parcellationAtlas.length === 0 - ? true - : (dataset.parcellationAtlas || []).some(({ name }) => name === parcellationName) - -const relatedRegionsCache = new Map() -const traverseRegionMap = regionSchemaId => { - if (relatedRegionsCache.has(regionSchemaId)) return relatedRegionsCache.get(regionSchemaId) - const out = regionMap.get(regionSchemaId) - if (!out) { - return [] - } - const { parent, self, children } = out - - /** - * how to determine how to traverse the tree to determine related regions? - * for now, will traverse towards the parents - * ie, when selecting a leaf node, all nodes up to the root will be considered important - */ - - const relatedSchemaIds = self.concat( - parent ? traverseRegionMap(parent) : [] - ) - relatedRegionsCache.set(regionSchemaId, relatedSchemaIds) - return relatedSchemaIds -} - -const filterDatasetsByRegion = async (datasets = [], regionSchemaId) => { - await Promise.all(initPrArray) - const allRelevantSchemaSet = new Set(traverseRegionMap(regionSchemaId)) - return datasets.filter(ds => ds['parcellationRegion'].some(pr => allRelevantSchemaSet.has(getIdFromFullId(pr.fullId)))) -} - -/** - * NB: if changed, also change ~/docs/advanced/dataset.md - * @param {*} dataset - * @param {*} param1 - */ -const filterDataset = async (dataset = null, { templateName, parcellationName }) => { - - if (/infant/.test(dataset.name)) return false - - // check if dataset belongs to template selected - const flagDatasetBelongToTemplate = datasetBelongsInTemplate({ templateName })(dataset) - - // check that dataset belongs to template selected - - // if (dataset.parcellationRegion.length === 0) return false - - let useSet - - // temporary measure - // TODO ask curaion team re name of jubrain atlas - let overwriteParcellationName - switch (parcellationName) { - case 'Cytoarchitectonic Maps': - useSet = bigbrainCytoSet - overwriteParcellationName = 'Julich-Brain Atlas' - break; - case 'JuBrain Cytoarchitectonic Atlas': - useSet = juBrainSet - overwriteParcellationName = 'Julich-Brain Atlas' - break; - case 'Fibre Bundle Atlas - Short Bundle': - useSet = shortBundleSet - break; - case 'Fibre Bundle Atlas - Long Bundle': - useSet = longBundleSet - break; - case 'Waxholm Space rat brain atlas v1': - useSet = waxholm1Set - break; - case 'Waxholm Space rat brain atlas v2': - useSet = waxholm2Set - break; - case 'Waxholm Space rat brain atlas v3': - useSet = waxholm3Set - break; - case 'Allen Mouse Common Coordinate Framework v3 2015': - useSet = allen2015Set - break; - case 'Allen Mouse Common Coordinate Framework v3 2017': - useSet = allen2017Set - break; - default: - useSet = new Set() - } - const flagDatasetBelongToParcellation = datasetBelongToParcellation({ dataset, parcellationName: overwriteParcellationName || parcellationName }) - && await datasetRegionExistsInParcellationRegion(dataset.parcellationRegion, useSet) - - return flagDatasetBelongToTemplate || flagDatasetBelongToParcellation -} - -/** - * NB: if changed, also change ~/docs/advanced/dataset.md - * @param {*} datasets - * @param {*} param1 - */ -const filterDatasets = async (datasets = [], { templateName, parcellationName }) => { - - // filter by commonsense first (species) - const commonSenseFilteredDatasets = datasets.filter(getCommonSenseDsFilter({ templateName, parcellationName })) - - // filter by parcellation name and if region is in parcellation - const filteredDatasets = [] - for (const dataset of commonSenseFilteredDatasets) { - if (await filterDataset(dataset, { templateName, parcellationName })) { - filteredDatasets.push(dataset) - } - } - - // append if preview is available - const filteredDatasetsAppendingPreview = filteredDatasets.map(ds => { - return { - ...ds, - preview: hasPreview({ datasetName: ds.name }) - } - }) - - return filteredDatasetsAppendingPreview -} - -const init = async () => { - if (process.env.ACCESS_TOKEN) { - if (process.env.NODE_ENV === 'production') console.error(`ACCESS_TOKEN set in production!`) - else console.warn(`ACCESS_TOKEN environmental variable is set! All queries will be made made with ACCESS_TOKEN!`) - } - if (getPublicAccessToken) return - getPublicAccessToken = getPublic -} - -const KG_ROOT = process.env.KG_ROOT || `https://kg.humanbrainproject.eu/query` -const KG_SEARCH_VOCAB = process.env.KG_SEARCH_VOCAB || 'https://schema.hbp.eu/myQuery/' - -module.exports = { - getIdFromFullId, - populateSet, - init, - getUserKGRequestParam, - retry, - filterDatasets, - datasetBelongToParcellation, - datasetRegionExistsInParcellationRegion, - datasetBelongsInTemplate, - filterDatasetsByRegion, - _getParcellations: async () => { - await Promise.all(initPrArray) - return { - juBrainSet, - shortBundleSet, - longBundleSet, - waxholm1Set, - waxholm2Set, - waxholm3Set, - allen2015Set, - allen2017Set - } - }, - constants: { - KG_ROOT, - KG_SEARCH_VOCAB - } -} \ No newline at end of file diff --git a/deploy/datasets/util.spec.js b/deploy/datasets/util.spec.js deleted file mode 100644 index ca591c448..000000000 --- a/deploy/datasets/util.spec.js +++ /dev/null @@ -1,369 +0,0 @@ -const { populateSet, datasetBelongToParcellation, retry, datasetBelongsInTemplate, filterDatasets, datasetRegionExistsInParcellationRegion, _getParcellations, filterDatasetsByRegion } = require('./util') -const { fake } = require('sinon') -const { assert, expect } = require('chai') -const waxholmv2 = require('./testData/waxholmv2') -const allen2015 = require('./testData/allen2015') -const bigbrain = require('./testData/bigbrain') -const humanReceptor = require('./testData/humanReceptor') -const mni152JuBrain = require('./testData/mni152JuBrain') -const colin27 = require('./testData/colin27') -const hoc1Pmap = require('./testData/hoc1pmap') - -const SKIP_RETRY_TEST = process.env.SKIP_RETRY_TEST - -describe('datasets/util.js', () => { - - describe('retry', () => { - - if(SKIP_RETRY_TEST) return - - let val = 0 - - const failCall = fake() - const succeedCall = fake() - - const prFn = () => { - val++ - return val >=3 - ? (succeedCall(), Promise.resolve()) - : (failCall(), Promise.reject()) - } - - beforeEach(() => { - val = 0 - succeedCall.resetHistory() - failCall.resetHistory() - }) - - it('retry until succeed', async () => { - await retry(prFn) - assert(succeedCall.called) - assert(failCall.calledTwice) - }) - - it('retry with shorter timeouts', async () => { - await retry(prFn, { timeout: 100 }) - assert(succeedCall.called) - assert(failCall.calledTwice) - }) - - it('when retries excceeded, retry fn throws', async () => { - try { - await retry(prFn, { timeout: 100, retries: 2 }) - assert(false, 'retry fn should throw if retries exceed') - } catch (e) { - assert(true) - } - }) - }) - - describe('datasetBelongsInTemplate', () => { - it('should filter datasets with template defined', () => { - for (const ds of bigbrain) { - - const belong = datasetBelongsInTemplate({ templateName: 'Big Brain (Histology)' })(ds) - expect(belong).to.be.true - - } - for (const ds of colin27) { - - const belong = datasetBelongsInTemplate({ templateName: 'MNI Colin 27' })(ds) - expect(belong).to.be.true - } - }) - - it('should NOT include datasets without any reference space defined', () => { - for (const ds of humanReceptor) { - - const belong = datasetBelongsInTemplate({ templateName: 'Big Brain (Histology)' })(ds) - expect(belong).to.be.false - } - }) - - it('should filter out referenceSpaces not in list', () => { - for (const ds of bigbrain) { - - const belong = datasetBelongsInTemplate({ templateName: 'MNI 152 ICBM 2009c Nonlinear Asymmetric' })(ds) - expect(belong).to.be.false - } - for (const ds of mni152JuBrain) { - - const belong = datasetBelongsInTemplate({ templateName: 'Big Brain (Histology)' })(ds) - expect(belong).to.be.false - } - }) - }) - - describe('datasetRegionExistsInParcellationRegion', () => { - it('should filter waxholm v2 properly', async () => { - - const waxholmv2Pr = waxholmv2.map(dataset => { - return dataset.parcellationRegion - }) - - const { waxholm2Set } = await _getParcellations() - for (const pr of waxholmv2Pr){ - - const flag = await datasetRegionExistsInParcellationRegion(pr, waxholm2Set) - expect(flag).to.be.true - } - }) - - it('should filter mni152JuBrain jubrain properly', async () => { - const { juBrainSet } = await _getParcellations() - for (const ds of mni152JuBrain){ - - const { parcellationRegion: prs } = ds - const flag = await datasetRegionExistsInParcellationRegion(prs, juBrainSet) - expect(flag).to.be.true - } - }) - - it('should filter allen2015 properly', async () => { - const { allen2015Set } = await _getParcellations() - for (const ds of allen2015){ - - const flag2015 = await datasetRegionExistsInParcellationRegion(ds.parcellationRegion, allen2015Set) - expect( - flag2015 - ).to.be.true - - } - }) - - it('should filterout allen2015 datasets in allen2017', async () => { - - const { allen2017Set } = await _getParcellations() - for (const ds of allen2015){ - - const flag2017 = await datasetRegionExistsInParcellationRegion(ds.parcellationRegion, allen2017Set) - expect( - flag2017 - ).to.be.false - } - }) - - }) - - describe('filterDatasets', () => { - it('should filter waxholm v1 properly', async () => { - const filteredResult = await filterDatasets(waxholmv2, { parcellationName: 'Waxholm Space rat brain atlas v1' }) - expect(filteredResult).to.have.length(0) - }) - - it('should filter waxholm v2 properly', async () => { - const filteredResult = await filterDatasets(waxholmv2, { parcellationName: 'Waxholm Space rat brain atlas v2' }) - expect(filteredResult).to.have.length(1) - }) - - it('should filter allen 2015 properly', async () => { - - const filteredResult = await filterDatasets(allen2015, { parcellationName: 'Allen Mouse Common Coordinate Framework v3 2015' }) - expect(filteredResult).to.have.length(allen2015.length) - }) - }) - - describe('datasetBelongToParcellation', () => { - const dataset = { - parcellationAtlas:[{ - name: 'jubrain v17' - }] - } - const parcellationName = 'jubrain v17' - const dataset2 = { - parcellationAtlas:[{ - name: 'jubrain v18' - }] - } - const parcellationName2 = 'jubrain v18' - it('if parcellation name is undefined, will always return true', () => { - expect( - datasetBelongToParcellation({ - parcellationName: null, - dataset - }) - ).to.be.true - }) - it('if parcellationAtlas of dataset is empty array, will always return true', () => { - expect( - datasetBelongToParcellation({ - dataset: { parcellationAtlas: [] }, - parcellationName - })).to.be.true - }) - it('if parcellationAtlas of dataset is non empty array, and parcellationName is defined, should return false if they do not match', () => { - expect( - datasetBelongToParcellation({ - dataset, - parcellationName: parcellationName2 - }) - ).to.be.false - }) - - it('if parcellationAtlas of dataset is non empty array, and parcellationName is defined, should return true if they do match', () => { - expect( - datasetBelongToParcellation({ - dataset, - parcellationName - }) - ).to.be.true - }) - - it('allen2015 belong to parcellation', () => { - for (const ds of allen2015){ - - expect( - datasetBelongToParcellation({ - dataset: ds, - parcellationName: 'Allen Mouse Common Coordinate Framework v3 2015' - }) - ).to.be.true - } - }) - - it('hoc1pmap should not belong to bundle parcellation', () => { - for (const ds of hoc1Pmap){ - expect( - datasetBelongToParcellation({ - dataset: ds, - parcellationName: 'Fibre Bundle Atlas - Long Bundle' - }) - ).to.be.false - expect( - datasetBelongToParcellation({ - dataset: ds, - parcellationName: 'Fibre Bundle Atlas - Short Bundle' - }) - ).to.be.false - } - }) - }) - - describe('populateSet', () => { - it('should populate relatedAreas', () => { - const area44 = { - "name": "Area 44 (IFG)", - "arealabel": "Area-44", - "status": "publicP", - "labelIndex": null, - "synonyms": [], - "relatedAreas": [ - { - "name": "Area 44v", - "fullId": { - "kg": { - "kgSchema": "minds/core/parcellationregion/v1.0.0", - "kgId": "7e5e7aa8-28b8-445b-8980-2a6f3fa645b3" - } - } - }, - { - "name": "Area 44d", - "fullId": { - "kg": { - "kgSchema": "minds/core/parcellationregion/v1.0.0", - "kgId": "8aeae833-81c8-4e27-a8d6-deee339d6052" - } - } - } - ], - "rgb": [ - 54, - 74, - 75 - ], - "children": [ - ], - "fullId": { - "kg": { - "kgSchema": "minds/core/parcellationregion/v1.0.0", - "kgId": "8a6be82c-5947-4fff-8348-cf9bf73e4f40" - } - } - } - const set = populateSet([area44]) - expect(Array.from(set)).to.contain.members([ - 'minds/core/parcellationregion/v1.0.0/7e5e7aa8-28b8-445b-8980-2a6f3fa645b3', - 'minds/core/parcellationregion/v1.0.0/8aeae833-81c8-4e27-a8d6-deee339d6052', - 'minds/core/parcellationregion/v1.0.0/8a6be82c-5947-4fff-8348-cf9bf73e4f40', - ]) - }) - }) - - describe('filterDatasetsByRegion', () => { - - const idHumanTe1 = `minds/core/parcellationregion/v1.0.0/13e21153-2ba8-4212-b172-8894f1012225` - const idHumanTe1Alt = `minds/core/parcellationregion/v1.0.0/f424643e-9baf-4c50-9417-db1ac33dcd3e` - const idHumanArea7ASPL = 'minds/core/parcellationregion/v1.0.0/e26e999f-77ad-4934-9569-8290ed05ebda' - const idHumanArea7A = `minds/core/parcellationregion/v1.0.0/811f4adb-4a7c-45c1-8034-4afa9edf586a` - const idMouseWholeBrain = `minds/core/parcellationregion/v1.0.0/be45bc91-8db5-419f-9471-73a320f44e06` - const idMousePrimaryMotor = `minds/core/parcellationregion/v1.0.0/a07b4390-62db-451b-b211-a45f67c6b18e` - const idMousePrimarySomatosensory = `minds/core/parcellationregion/v1.0.0/f99995b6-a3d0-42be-88c3-eff8a83e60ea` - - const dataHumanArea7ASPL = { - name: 'dataHumanArea7ASPL', - parcellationRegion: [{ - fullId: idHumanArea7ASPL - }] - } - const dataHumanTe1 = { - name: 'dataHumanTe1', - parcellationRegion: [{ - fullId: idHumanTe1 - }] - } - const dataMouseWholeBrain = { - name: 'dataMouseWholeBrain', - parcellationRegion: [{ - fullId: idMouseWholeBrain - }] - } - - const dataMousePrimaryMotor = { - name: 'dataMousePrimaryMotor', - parcellationRegion: [{ - // Mouse Primary motor area (2017) - fullId: idMousePrimaryMotor - }] - } - - describe('human parc regions', () => { - it('should leave in data with matching reference space', async () => { - const result = await filterDatasetsByRegion([dataHumanArea7ASPL], idHumanArea7ASPL) - expect(result).to.deep.equal([dataHumanArea7ASPL]) - }) - it('should filter out data with no matching reference space', async () => { - const result = await filterDatasetsByRegion([dataMouseWholeBrain], idHumanArea7ASPL) - expect(result).to.deep.equal([]) - }) - it('if query region is relatedAreas, should also leave in dataset', async () => { - const result = await filterDatasetsByRegion([dataHumanTe1], idHumanTe1Alt) - expect(result).to.deep.equal([dataHumanTe1]) - }) - }) - - describe('mouse parc regions', () => { - - it('should leave in data with matchin reference space', async () => { - const result = await filterDatasetsByRegion([dataMouseWholeBrain], idMouseWholeBrain) - expect(result).to.deep.equal([dataMouseWholeBrain]) - - const result2 = await filterDatasetsByRegion([dataMousePrimaryMotor], idMousePrimaryMotor) - expect(result2).to.deep.equal([dataMousePrimaryMotor]) - }) - it('should filter out data with no matching referene space', async () => { - const result = await filterDatasetsByRegion([dataHumanArea7ASPL], idMouseWholeBrain) - expect(result).to.deep.equal([]) - }) - it('should filter out data if sup region is selected', async () => { - // example: whole brain is selected, but dataset in primary motor area will be FILTERED OUT - const result = await filterDatasetsByRegion([dataMousePrimaryMotor], idMouseWholeBrain) - expect(result).to.deep.equal([]) - }) - it('should leave in data when sub region is selected', async () => { - const result = await filterDatasetsByRegion([dataMouseWholeBrain], idMousePrimaryMotor) - expect(result).to.deep.equal([dataMouseWholeBrain]) - }) - }) - }) -}) diff --git a/deploy/nehubaConfig/index.js b/deploy/nehubaConfig/index.js deleted file mode 100644 index d6f9a44b3..000000000 --- a/deploy/nehubaConfig/index.js +++ /dev/null @@ -1,19 +0,0 @@ -const express = require('express') -const { getTemplateNehubaConfig } = require('./query') -const { detEncoding } = require('nomiseco') -const { getHandleErrorFn } = require('../util/streamHandleError') - -const nehubaConfigRouter = express.Router() - -nehubaConfigRouter.get('/:configId', (req, res, next) => { - - const header = req.get('Accept-Encoding') - const acceptedEncoding = detEncoding(header) - - const { configId } = req.params - if (acceptedEncoding) res.set('Content-Encoding', acceptedEncoding) - - getTemplateNehubaConfig({ configId, acceptedEncoding, returnAsStream:true}).pipe(res).on('error', getHandleErrorFn(req, res)) -}) - -module.exports = nehubaConfigRouter \ No newline at end of file diff --git a/deploy/nehubaConfig/query.js b/deploy/nehubaConfig/query.js deleted file mode 100644 index 5bbcd012a..000000000 --- a/deploy/nehubaConfig/query.js +++ /dev/null @@ -1,43 +0,0 @@ -const fs = require('fs') -const path = require('path') -const { BROTLI, GZIP } = require('nomiseco') -const { reconfigureUrl, PRECOMPUTED_SERVER } = require('../util/reconfigPrecomputedServer') -const through2 = require('through2') - -const getFileAsPromise = filepath => new Promise((resolve, reject) => { - fs.readFile(filepath, 'utf-8', (err, data) => { - if (err) return reject(err) - - resolve( - PRECOMPUTED_SERVER - ? reconfigureUrl(data) - : data - ) - }) -}) - -exports.getTemplateNehubaConfig = ({configId, acceptedEncoding, returnAsStream}) => { - if (process.env.NODE_ENV === 'production') { - filepath = path.join(__dirname, '..', 'res', `${configId}.json`) - } else { - filepath = path.join(__dirname, '..', '..', 'src', 'res', 'ext', `${configId}.json`) - } - - if (acceptedEncoding === BROTLI) { - if (returnAsStream) return fs.createReadStream(`${filepath}.br`) - else return getFileAsPromise(`${filepath}.br`) - } - - if (acceptedEncoding === GZIP) { - if (returnAsStream) return fs.createReadStream(`${filepath}.gz`) - else return getFileAsPromise(`${filepath}.gz`) - } - - // no need to handle error. handled downstream - if (returnAsStream) return fs.createReadStream(filepath).pipe( - through2.obj(function(file, enc, cb){ - cb(null, reconfigureUrl(file.toString())) - }) - ) - else return getFileAsPromise(filepath) -} diff --git a/deploy/templates/index.js b/deploy/templates/index.js deleted file mode 100644 index 3378428b1..000000000 --- a/deploy/templates/index.js +++ /dev/null @@ -1,51 +0,0 @@ -const router = require('express').Router() -const query = require('./query') -const path = require('path') -const { detEncoding } = require('nomiseco') -const url = require('url') -const { getHandleErrorFn } = require('../util/streamHandleError') - -/** - * root path fetches all templates - */ -router.get('/', (req, res, next) => { - query.getAllTemplates() - .then(templates => { - - const templatesRes = templates.map(v => { - return url.resolve(`${res.locals.routePathname}/`, v) - }) - res.status(200).json(templatesRes) - }) - .catch(error => next({ - code: 500, - error, - trace: 'getTemplate' - })) -}) - -router.get('/:template', (req, res, next) => { - const { template } = req.params - - const header = req.get('Accept-Encoding') - const acceptedEncoding = detEncoding(header) - - query.getAllTemplates() - .then(templates => { - if (templates.indexOf(template) < 0) - return next({ - code : 404, - error: 'template not in the list supported' - }) - - if (acceptedEncoding) res.set('Content-Encoding', acceptedEncoding) - query.getTemplate({ template, acceptedEncoding, returnAsStream:true }).pipe(res).on('error', getHandleErrorFn(req, res)) - }) - .catch(error => next({ - code: 500, - error, - trace: 'getTemplate/template' - })) -}) - -module.exports = router \ No newline at end of file diff --git a/deploy/templates/query.js b/deploy/templates/query.js deleted file mode 100644 index 9dbbafb4b..000000000 --- a/deploy/templates/query.js +++ /dev/null @@ -1,50 +0,0 @@ -const fs = require('fs') -const path = require('path') -const { BROTLI, GZIP } = require('nomiseco') - -exports.getAllTemplates = () => new Promise((resolve, reject) => { - - /** - * TODO temporary. Need to query KG or something else for this data in the future - */ - const templates = [ - // 'infant', - 'bigbrain', - 'colin', - 'MNI152', - 'waxholmRatV2_0', - 'allenMouse', - 'freesurfer' - ] - resolve(templates) -}) - -const getFileAsPromise = filepath => new Promise((resolve, reject) => { - fs.readFile(filepath, 'utf-8', (err, data) => { - if (err) return reject(err) - resolve(data) - }) -}) - -exports.getTemplate = ({ template, acceptedEncoding, returnAsStream }) => { - - let filepath - if (process.env.NODE_ENV === 'production') { - filepath = path.join(__dirname, '..', 'res', `${template}.json`) - } else { - filepath = path.join(__dirname, '..', '..', 'src', 'res', 'ext', `${template}.json`) - } - - if (acceptedEncoding === BROTLI) { - if (returnAsStream) return fs.createReadStream(`${filepath}.br`) - else return getFileAsPromise(`${filepath}.br`) - } - - if (acceptedEncoding === GZIP) { - if (returnAsStream) return fs.createReadStream(`${filepath}.gz`) - else return getFileAsPromise(`${filepath}.gz`) - } - - if (returnAsStream) return fs.createReadStream(filepath) - else return getFileAsPromise(filepath) -} \ No newline at end of file diff --git a/src/glue.ts b/src/glue.ts index 185a89bec..3b60dbc26 100644 --- a/src/glue.ts +++ b/src/glue.ts @@ -389,9 +389,6 @@ export class DatasetPreviewGlue implements IDatasetPreviewGlue, OnDestroy{ private openDatasetPreviewWidget(data: IDatasetPreviewData) { const { datasetId: kgId, filename } = data - - if (!!this.actionOnWidget) { - } } public datasetPreviewDisplayed(file: DatasetPreview, dataset?: IKgDataEntry){ -- GitLab