diff --git a/deploy/app.js b/deploy/app.js index 9192aa73ba7eeee36bdd5198dbf0eb0a2834f4a8..29d6ab11ead3c319530104720e4708ec1f05986f 100644 --- a/deploy/app.js +++ b/deploy/app.js @@ -8,7 +8,6 @@ const cookieParser = require('cookie-parser') const bkwdMdl = require('./bkwdCompat')() const { router: regionalFeaturesRouter, regionalFeatureIsReady } = require('./regionalFeatures') -const { router: datasetRouter } = require('./datasets') const LOCAL_CDN_FLAG = !!process.env.PRECOMPUTED_SERVER @@ -234,9 +233,6 @@ const jsonMiddleware = (req, res, next) => { /** * resources endpoints */ -const atlasesRouter = require('./atlas') -const templateRouter = require('./templates') -const nehubaConfigRouter = require('./nehubaConfig') const pluginRouter = require('./plugins') const previewRouter = require('./preview') @@ -245,10 +241,14 @@ const setResLocalMiddleWare = routePathname => (req, res, next) => { next() } -app.use('/atlases', setResLocalMiddleWare('atlases'), atlasesRouter) -app.use('/templates', setResLocalMiddleWare('templates'), jsonMiddleware, templateRouter) -app.use('/nehubaConfig', jsonMiddleware, nehubaConfigRouter) -app.use('/datasets', jsonMiddleware, datasetRouter) +const deprecated = (req, res) => { + res.status(404).send(`Route has been removed.`) +} + +app.use('/atlases', deprecated) +app.use('/templates', deprecated) +app.use('/nehubaConfig', deprecated) +app.use('/datasets', deprecated) app.use('/regionalFeatures', jsonMiddleware, regionalFeaturesRouter) app.use('/plugins', jsonMiddleware, pluginRouter) app.use('/preview', jsonMiddleware, previewRouter) diff --git a/deploy/app.spec.js b/deploy/app.spec.js index 5427e5d80d0b450b2dba959375fc46c6c4cefe47..cf0cfd703e22e1d2b302a79b2222fe3239c5025c 100644 --- a/deploy/app.spec.js +++ b/deploy/app.spec.js @@ -25,13 +25,6 @@ describe('authentication', () => { const authConfigureAuthStub = sinon.stub(auth, 'configureAuth') const authIsReadyStub = sinon.stub(auth, 'ready') - require.cache[require.resolve('./datasets')] = { - exports: { - router: (req, res, next) => next(), - ready: async () => true - } - } - require.cache[require.resolve('./saneUrl')] = { exports: { router: (req, res, next) => next(), @@ -61,7 +54,6 @@ describe('authentication', () => { }) after(() => { - delete require.cache[require.resolve('./datasets')] delete require.cache[require.resolve('./saneUrl')] delete require.cache[require.resolve('./user')] delete require.cache[require.resolve('./constants')] diff --git a/deploy/atlas/index.js b/deploy/atlas/index.js deleted file mode 100644 index 9bf745f2e071849efba3128ebb53f329bf44f27f..0000000000000000000000000000000000000000 --- a/deploy/atlas/index.js +++ /dev/null @@ -1,142 +0,0 @@ -const router = require('express').Router() -const url = require('url') -const fs = require('fs') -const path = require('path') -const { detEncoding } = require('nomiseco') -const { getAllAtlases, getAtlasById, isReady } = require('./query') -const HOSTNAME = process.env.HOSTNAME || 'http://localhost:3000' -const HOST_PATHNAME = process.env.HOST_PATHNAME || '' -const { getTemplate } = require('../templates/query') -const { getHandleErrorFn } = require('../util/streamHandleError') - -const getPreviewFn = ({ res, lastpart }) => HOSTNAME.replace(/\/$/, '') + - HOST_PATHNAME.replace(/\/$/, '') + '/' + - (res.locals.routePathname - ? url.resolve(`${res.locals.routePathname}/`, lastpart) - : lastpart) - -router.get('/', async (req, res) => { - const allAtlases = await getAllAtlases() - const resolvedAtlases = allAtlases.map(v => { - return { - '@id': v, - url: getPreviewFn({ res, lastpart: encodeURIComponent(v) }) - } - }) - res.status(200).json(resolvedAtlases) -}) - -router.get('/ready', (req, res) => { - if (isReady()) { - return res.status(200).end() - } else { - return res.status(503).end() - } -}) - -const previewImageFIleNameMap = new Map([ - ['minds/core/referencespace/v1.0.0/a1655b99-82f1-420f-a3c2-fe80fd4c8588', 'bugbrain.png'], - ['minds/core/referencespace/v1.0.0/dafcffc5-4826-4bf1-8ff6-46b8a31ff8e2', 'icbm2009c.png'], - ['minds/core/referencespace/v1.0.0/7f39f7be-445b-47c0-9791-e971c0b6d992', 'colin27.png'], - ['minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579', 'cytoarchitectonic-maps.png'], - ['juelich/iav/atlas/v1.0.0/3', 'cortical-layers.png'], - ['juelich/iav/atlas/v1.0.0/4', 'grey-white-matter.png'], - ['juelich/iav/atlas/v1.0.0/5', 'firbe-long.png'], - ['juelich/iav/atlas/v1.0.0/6', 'firbe-short.png'], - ['minds/core/parcellationatlas/v1.0.0/d80fbab2-ce7f-4901-a3a2-3c8ef8a3b721', 'difumo-64.png'], - ['minds/core/parcellationatlas/v1.0.0/73f41e04-b7ee-4301-a828-4b298ad05ab8', 'difumo-128.png'], - ['minds/core/parcellationatlas/v1.0.0/141d510f-0342-4f94-ace7-c97d5f160235', 'difumo-256.png'], - ['minds/core/parcellationatlas/v1.0.0/63b5794f-79a4-4464-8dc1-b32e170f3d16', 'difumo-512.png'], - ['minds/core/parcellationatlas/v1.0.0/12fca5c5-b02c-46ce-ab9f-f12babf4c7e1', 'difumo-1024.png'], - ['minds/core/referencespace/v1.0.0/265d32a0-3d84-40a5-926f-bf89f68212b9', 'allen-mouse.png'], - ['minds/core/parcellationatlas/v1.0.0/05655b58-3b6f-49db-b285-64b5a0276f83', 'allen-mouse-2017.png'], - ['minds/core/parcellationatlas/v1.0.0/39a1384b-8413-4d27-af8d-22432225401f', 'allen-mouse-2015.png'], - ['minds/core/referencespace/v1.0.0/d5717c4a-0fa1-46e6-918c-b8003069ade8', 'waxholm.png'], - ['minds/core/parcellationatlas/v1.0.0/ebb923ba-b4d5-4b82-8088-fa9215c2e1fe', 'waxholm-v3.png'], - ['minds/core/parcellationatlas/v1.0.0/2449a7f0-6dd0-4b5a-8f1e-aec0db03679d', 'waxholm-v2.png'], - ['minds/core/parcellationatlas/v1.0.0/11017b35-7056-4593-baad-3934d211daba', 'waxholm-v1.png'], - ['juelich/iav/atlas/v1.0.0/79cbeaa4ee96d5d3dfe2876e9f74b3dc3d3ffb84304fb9b965b1776563a1069c', 'short-bundle-hcp.png'], - ['julich/tmp/referencespace/freesurfer', 'freesurfer.png'], - ['julich/tmp/parcellation/freesurfer-test-parc', 'freesurfer.png'], -]) - -router.get('/preview', (req, res) => { - const { id } = req.query - const filename = previewImageFIleNameMap.get(id) - if (!filename) return res.status(404).end() - - const filepath = path.join(__dirname, '../assets/images/atlas-selection', filename) - - try { - res.setHeader('Content-Type', 'image/png') - fs.createReadStream(filepath).pipe(res).on('error', getHandleErrorFn(req, res)) - } catch (e) { - res.status(500).send(e) - } -}) - -router.get('/:atlasId', async (req, res) => { - const { atlasId } = req.params - const { templateSpaces, parcellations, ...rest } = await getAtlasById(atlasId) - - const searchParam = new url.URLSearchParams() - searchParam.set('id', atlasId) - const lastPathPreview = `preview?${searchParam.toString()}` - - return res.status(200).json({ - ...rest, - previewUrl: getPreviewFn({ res, lastpart: lastPathPreview }), - parcellations: parcellations.map(p => { - const spSearchParam = new url.URLSearchParams() - spSearchParam.set('id', p['@id']) - const parcellationPreview = `preview?${spSearchParam.toString()}` - return { - previewUrl: getPreviewFn({ res, lastpart: parcellationPreview }), - ...p - } - }), - templateSpaces: templateSpaces.map(tmpl => { - const lastTemplatePath = `${encodeURIComponent(atlasId)}/template/${encodeURIComponent(tmpl['@id'])}` - - const searchParam = new url.URLSearchParams() - searchParam.set('id', tmpl['@id']) - const lastPathPreview = `preview?${searchParam.toString()}` - return { - ...tmpl, - previewUrl: getPreviewFn({ res, lastpart: lastPathPreview }) - } - }) - }) -}) - -const templateIdToStringMap = new Map([ - ['minds/core/referencespace/v1.0.0/265d32a0-3d84-40a5-926f-bf89f68212b9', 'allenMouse'], - ['minds/core/referencespace/v1.0.0/d5717c4a-0fa1-46e6-918c-b8003069ade8', 'waxholmRatV2_0'], - ['minds/core/referencespace/v1.0.0/a1655b99-82f1-420f-a3c2-fe80fd4c8588', 'bigbrain'], - ['minds/core/referencespace/v1.0.0/dafcffc5-4826-4bf1-8ff6-46b8a31ff8e2', 'MNI152'], - ['minds/core/referencespace/v1.0.0/7f39f7be-445b-47c0-9791-e971c0b6d992', 'colin'] -]) - -router.get('/:atlasId/template/:templateId', async (req, res) => { - const { atlasId, templateId } = req.params - - const mappedString = templateIdToStringMap.get(templateId) - if (!mappedString) { - return res.status(404).end() - } - - const header = req.get('Accept-Encoding') - const acceptedEncoding = detEncoding(header) - - if (acceptedEncoding) res.set('Content-Encoding', acceptedEncoding) - getTemplate({ template: mappedString, acceptedEncoding, returnAsStream: true }) - .pipe(res) - .on('error', getHandleErrorFn(req, res)) -}) - -router.get('/:atlasId/parcellation/:parcellationId', async (req, res) => { - res.status(501).end() -}) - - -module.exports = router \ No newline at end of file diff --git a/deploy/atlas/index.spec.js b/deploy/atlas/index.spec.js deleted file mode 100644 index 727ae6e55a48746943df2cfe7a59375ae5cf57da..0000000000000000000000000000000000000000 --- a/deploy/atlas/index.spec.js +++ /dev/null @@ -1,69 +0,0 @@ -const { expect, assert } = require('chai') -const express = require('express') -const { retry } = require('../../common/util') -const got = require('got') - -let server, atlases, templates = [] -const PORT = 12345 -const baseUrl = `http://localhost:${PORT}` -process.env.HOSTNAME = baseUrl -let routePathname -describe('atlas/index.js', () => { - before(async () => { - const app = express() - - app.use((req, res, next) => { - if (routePathname) { - res.locals.routePathname = routePathname - } - next() - }) - - app.use(require('./index')) - - server = app.listen(PORT) - - await retry(async () => { - console.log('retrying') - await got(`${baseUrl}/ready`) - }, { timeout: 500 }) - }) - - beforeEach(() => { - routePathname = null - }) - - after(() => { - server.close() - }) - it('> GET / works', async () => { - const { body } = await got(`${baseUrl}/`, { responseType: 'json' }) - expect(body.length).to.equal(3) - assert( - body.every(({ url }) => !/undefined/.test(url) ), - 'url pathname should not contain undefined' - ) - atlases = body - }) - - it('> route pathname works', async () => { - routePathname = 'marshmellow' - - const { body } = await got(`${baseUrl}/`, { responseType: 'json' }) - expect(body.length).to.equal(3) - assert( - body.every(({ url }) => /marshmellow/.test(url)), - 'url pathname should be as set' - ) - }) - it('> every end point works', async () => { - for (const { url } of atlases) { - expect(!!url).to.be.true - const { body } = await got( - /^http/.test(url) ? url : `${baseUrl}/${url}`, - {responseType: 'json'} - ) - expect(body.templateSpaces.length).to.be.greaterThan(0) - } - }) -}) \ No newline at end of file diff --git a/deploy/atlas/query.js b/deploy/atlas/query.js deleted file mode 100644 index 2523c1e814ceb1ff8e241646afc94bcdb890c2aa..0000000000000000000000000000000000000000 --- a/deploy/atlas/query.js +++ /dev/null @@ -1,51 +0,0 @@ -const fs = require('fs') -const path = require('path') -const { promisify } = require('util') - -const readdirAsync = promisify(fs.readdir) -const readFileAsync = promisify(fs.readFile) - -let ready = false - -const map = new Map() - -const getData = async () => { - - let filepath - if (process.env.NODE_ENV === 'production') { - filepath = path.join(__dirname, '../res') - } else { - filepath = path.join(__dirname, '../../src/res/ext') - } - - const files = await readdirAsync(path.join(filepath, 'atlas')) - - for (const file of files) { - - try { - - const data = await readFileAsync(path.join(filepath, 'atlas', file), 'utf-8') - const json = JSON.parse(data) - map.set(json['@id'], json) - } catch (e) { - - } - } - ready = true -} - -getData() - -const getAllAtlases = async () => { - return Array.from(map.keys()) -} - -const getAtlasById = async id => { - return map.get(id) -} - -module.exports = { - getAllAtlases, - getAtlasById, - isReady: () => ready -} \ No newline at end of file diff --git a/deploy/atlas/sanity.spec.js b/deploy/atlas/sanity.spec.js deleted file mode 100644 index 009a0b41e9ed7b1526ab8ef58525bca66b0eb823..0000000000000000000000000000000000000000 --- a/deploy/atlas/sanity.spec.js +++ /dev/null @@ -1,105 +0,0 @@ -const fs = require('fs') -const path = require('path') -const { promisify } = require('util') -const asyncReadfile = promisify(fs.readFile) -const { expect, assert } = require('chai') - -const templateFiles = [ - 'bigbrain.json', - 'colin.json', - 'MNI152.json', - 'waxholmRatV2_0.json', - 'allenMouse.json', - 'freesurfer.json', -] - -const atlasFiles = [ - 'atlas_multiLevelHuman.json', - 'atlas_waxholmRat.json', - 'atlas_allenMouse.json', -] - -const templateIdToParcsMap = new Map() -const templateIdToTemplateMap = new Map() -const parcIdToTemplateId = new Map() -const parcIdToParcMap = new Map() - -const rootDir = path.join(__dirname, '../../src/res/ext') - -describe('> atlas sanity check', () => { - before(async () => { - for (const templateFile of templateFiles){ - const txt = await asyncReadfile( - path.join(rootDir, templateFile), - 'utf-8' - ) - const template = JSON.parse(txt) - const { ['@id']: templateId, name: templateName, parcellations } = template - if (!templateId) throw new Error(`${templateFile} / ${templateName} / @id not defined`) - templateIdToTemplateMap.set(templateId, template) - - for (const parc of parcellations) { - const { ['@id']: parcId, name: parcName } = parc - if (!parcId) throw new Error(`${templateFile} / ${parcName} /@id not defined`) - parcIdToParcMap.set(parcId, parc) - - const arr = templateIdToParcsMap.get(templateId) || [] - templateIdToParcsMap.set(templateId, arr.concat(parcId) ) - - const arr2 = parcIdToTemplateId.get(parcId) || [] - parcIdToTemplateId.set(parcId, arr2.concat(templateId)) - } - } - }) - - for (const atlas of atlasFiles) { - describe(`> checking ${atlas}`, () => { - - beforeEach(async () => { - const txt = await asyncReadfile( - path.join(rootDir, 'atlas', atlas) - ) - const { ['@id']: atlasId, name: atlasName, templateSpaces, parcellations } = JSON.parse(txt) - - describe(`> checking ${atlasName}`, () => { - describe('> checking template spaces', () => { - for (const { name: tName, ['@id']: tId, availableIn } of templateSpaces) { - describe(`> checking ${tName} with id ${tId}`, () => { - for (const { ['@id']: pId, name: pName } of availableIn) { - describe(`> checking ${pName}, with id ${pId}`, () => { - it('> template maps to parc', () => { - const arr = templateIdToParcsMap.get(tId) - const idx = arr.findIndex(id => id === pId) - assert( - idx >= 0, - 'entry can be found' - ) - arr.splice(idx, 1) - }) - - it('> parc maps to tmpl', () => { - - const arr = parcIdToTemplateId.get(pId) - if (!arr) throw new Error(`${pName} cannot be found`) - const idx = arr.findIndex(id => id === tId) - assert( - idx >= 0, - 'entry can be found' - ) - arr.splice(idx, 1) - }) - }) - } - }) - } - }) - }) - - }) - - it('> dummy test', () => { - expect(true).to.equal(true) - }) - }) - } -}) diff --git a/deploy/datasets/importIBS.js b/deploy/datasets/importIBS.js deleted file mode 100644 index 803a3ea79c743baa32e85462de507b265868c9c8..0000000000000000000000000000000000000000 --- a/deploy/datasets/importIBS.js +++ /dev/null @@ -1,75 +0,0 @@ -const fs = require('fs') -const path = require('path') -const julichBrainNameToNexusId = require('./supplements/data/julich_brain_name_to_nexusid') - - -const IBC_DATA_DIR = path.join(__dirname, './supplements/data/ibc/') -const IBC_SCHEMA = '//ibc/ibc_schema' - -const getIbcDatasetByFileName = (file) => { - const str = fs.readFileSync(path.join(IBC_DATA_DIR, file), "utf8"); - - const name = str.substring(2, str.indexOf('The Individual Brain Charting dataset is')) - const kgUrl = str.substring(str.indexOf('Knowledge Graph: https://'), str.indexOf('Following are the')) - const kgReference = [kgUrl.substring(kgUrl.indexOf('https'), kgUrl.length)] - const description = str.substring(str.indexOf('The Individual Brain Charting')).replace(/:-:/g, '---') - - const region = julichBrainNameToNexusId.find(r => r[0] && name.includes(r[0])) - const regionFullId = (region && region[1] && region[1].kg) ? `https://nexus.humanbrainproject.org/v0/data/${region[1].kg.kgSchema}/${region[1].kg.kgId}` : null - - return { - name, - kgReference, - description, - methods: ['functional magnetic resonance imaging (fMRI)'], - species: ['Homo sapiens'], - fullId: `https://ibc/ibc_schema/${file}`, - kgId: file, - kgSchema: '//ibc/ibc_schema', - referenceSpaces: [ - { - "name": null, - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/referencespace/v1.0.0/dafcffc5-4826-4bf1-8ff6-46b8a31ff8e2" - }, - { - "name": "MNI Colin 27", - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/referencespace/v1.0.0/7f39f7be-445b-47c0-9791-e971c0b6d992" - } - ], - parcellationAtlas: [ - { - name: 'Jülich Cytoarchitechtonic Brain Atlas (human)', - fullId: - 'https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579', - }], - parcellationRegion: [ - { - species: [], - name: region[0], - alias: null, - fullId: regionFullId - } - ], - embargoStatus: [{ - '@id': 'https://nexus.humanbrainproject.org/v0/data/minds/core/embargostatus/v1.0.0/1d726b76-b176-47ed-96f0-b4f2e17d5f19' - }] - } -} - -const ibcData = [] - -const ibcDataFiles = fs.readdirSync(IBC_DATA_DIR) -ibcDataFiles.forEach((file) => { - ibcData.push(getIbcDatasetByFileName(file)) -}) - -const getIBCData = () => { - return ibcData -} - - -module.exports = { - getIBCData, - getIbcDatasetByFileName, - IBC_SCHEMA: IBC_SCHEMA -} diff --git a/deploy/datasets/importIBS.spec.js b/deploy/datasets/importIBS.spec.js deleted file mode 100644 index 01fbb48d8f1847252252a69194c6231f7fbeb4fd..0000000000000000000000000000000000000000 --- a/deploy/datasets/importIBS.spec.js +++ /dev/null @@ -1,32 +0,0 @@ -const ibc = require('./importIBS') -const { expect } = require('chai') -const expectedIBCData = require('./testData/ibcDataExpected') - -describe('datasets/data/importIBC.js', () => { - describe('Get Dataset object from markdown', () => { - it('dataset name valid', () => { - const ibcData = ibc.getIbcDatasetByFileName('left_AIPS_IP1.md') - expect(expectedIBCData.name).to.be.equal(ibcData.name) - }) - it('dataset description valid', () => { - const ibcData = ibc.getIbcDatasetByFileName('left_AIPS_IP1.md') - expect(expectedIBCData.description).to.be.equal(ibcData.description) - }) - it('dataset reference valid', () => { - const ibcData = ibc.getIbcDatasetByFileName('left_AIPS_IP1.md') - expect(expectedIBCData.kgReference[0]).to.be.equal(ibcData.kgReference[0]) - }) - it('dataset fullId valid', () => { - const ibcData = ibc.getIbcDatasetByFileName('left_AIPS_IP1.md') - expect(expectedIBCData.fullId).to.be.equal(ibcData.fullId) - }) - it('dataset region valid', () => { - const ibcData = ibc.getIbcDatasetByFileName('left_AIPS_IP1.md') - expect(expectedIBCData.parcellationRegion[0]).to.be.eql(ibcData.parcellationRegion[0]) - }) - it('dataset valid', () => { - const ibcData = ibc.getIbcDatasetByFileName('left_AIPS_IP1.md') - expect(expectedIBCData).to.be.eql(ibcData) - }) - }) -}) diff --git a/deploy/datasets/index.js b/deploy/datasets/index.js deleted file mode 100644 index 4b3780d1ad2249d0643cfbeac63f4a5b8f83b910..0000000000000000000000000000000000000000 --- a/deploy/datasets/index.js +++ /dev/null @@ -1,265 +0,0 @@ -const express = require('express') -const path = require('path') -const fs = require('fs') -const datasetsRouter = express.Router() -const { init, getDatasets, getPreview, getDatasetFromId, getExternalSchemaDatasets, getDatasetFileAsZip, getTos, hasPreview, getDatasetsByRegion } = require('./query') -const { retry } = require('./util') -const url = require('url') -const qs = require('querystring') -const archiver = require('archiver') -const { getHandleErrorFn } = require('../util/streamHandleError') -const { IBC_SCHEMA } = require('./importIBS') - -const { getIdFromFullId } = require('../../common/util') - -datasetsRouter.use(express.urlencoded({ extended: false })) -datasetsRouter.use(express.json()) - -let readyFlag = false - -retry(async () => { - await init() - console.log(`data init success`) - readyFlag = true -}, { timeout: 1000, retries: 5 }) - -const ready = async () => readyFlag - -const cacheMaxAge24Hr = (_req, res, next) => { - const oneDay = 24 * 60 * 60 - res.setHeader('Cache-Control', `max-age=${oneDay}`) - next() -} - -const noCacheMiddleWare = (_req, res, next) => { - res.setHeader('Cache-Control', 'no-cache') - next() -} - -const getVary = (headers) => (_req, res, next) => { - if (!headers instanceof Array) { - console.warn(`getVary arguments needs to be an Array of string`) - return next() - } - res.setHeader('Vary', headers.join(', ')) - next() -} - - -datasetsRouter.get('/tos', cacheMaxAge24Hr, async (req, res) => { - const tos = getTos() - if (tos) { - res.setHeader('Content-Type', 'text/markdown; charset=utf-8') - res.status(200).send(tos) - } else { - res.status(404).end() - } -}) - -datasetsRouter.use('/spatialSearch', noCacheMiddleWare, require('./spatialRouter')) - -datasetsRouter.get('/templateNameParcellationName/:templateName/:parcellationName', noCacheMiddleWare, (req, res, next) => { - const { templateName, parcellationName } = req.params - - const { user } = req - getDatasets({ templateName, parcellationName, user }) - .then(ds => { - res.status(200).json(ds) - }) - .catch(error => { - next({ - code: 500, - error, - trace: 'templateName' - }) - }) -}) - -datasetsRouter.get('/byRegion/:regionId', noCacheMiddleWare, async (req, res) => { - const { query } = req - const refSpcId = query && query.referenceSpaceId - - const { regionId } = req.params - const { user } = req - const ds = await getDatasetsByRegion({ regionId, user }) - const filteredDs = ds.filter(d => { - /** - * filter by reference space - */ - if (!d['referenceSpaces'] || d['referenceSpaces'].length === 0 || !refSpcId) { - return true - } - return d['referenceSpaces'].some(refSpc => getIdFromFullId(refSpc['fullId']) === refSpcId) - }) - res.status(200).json(filteredDs) -}) - -const deprecatedNotice = (_req, res) => { - res.status(400).send(`querying datasets with /templateName or /parcellationName separately have been deprecated. Please use /templateNameParcellationName/:templateName/:parcellationName instead`) -} - -datasetsRouter.get('/templateName/:templateName', deprecatedNotice) - -datasetsRouter.get('/parcellationName/:parcellationName', deprecatedNotice) - -/** - * It appears that query param are not - */ -datasetsRouter.get('/preview/:datasetName', getVary(['referer']), cacheMaxAge24Hr, (req, res, next) => { - const { datasetName } = req.params - const ref = url.parse(req.headers.referer) - const { templateSelected, parcellationSelected } = qs.parse(ref.query) - - getPreview({ datasetName, templateSelected }) - .then(preview => { - if (preview) { - res.status(200).json(preview) - } else { - next({ - code: 404, - trace: 'preview' - }) - } - }) - .catch(error => { - next({ - code: 500, - error, - trace: 'preview' - }) - }) -}) - -const previewFileMap = new Map() - -const PUBLIC_PATH = process.env.NODE_ENV === 'production' - ? path.join(__dirname, '..', 'public') - : path.join(__dirname, '..', '..', 'dist', 'aot') - - -const RECEPTOR_PATH = path.join(PUBLIC_PATH, 'res', 'image') -fs.readdir(RECEPTOR_PATH, (err, files) => { - if (err) { - console.warn('reading receptor error', err) - return - } - files.forEach(file => previewFileMap.set(`res/image/receptor/${file}`, path.join(RECEPTOR_PATH, file))) -}) - - -// TODO deprecated -datasetsRouter.get('/previewFile', cacheMaxAge24Hr, (req, res) => { - const { file } = req.query - const filePath = previewFileMap.get(file) - - // Set content type to give browser a hint for download - const ext = path.extname(filePath).slice(1) - const type = express.static.mime.types[ext] - - if (type) res.setHeader('Content-Type', type) - - // even though req.url is modified, req.query is not - // for now, just serve non encoded image - - res.removeHeader('Content-Encoding') - - if (filePath) { - fs.createReadStream(filePath).pipe(res).on('error', getHandleErrorFn(req, res)) - } else { - res.status(404).send() - } -}) - -const kgExternalDatasetSchemas = [ - IBC_SCHEMA, - // Add more here... -] - -const checkKgQuery = (req, res, next) => { - const { kgSchema } = req.query - if (kgSchema !== 'minds/core/dataset/v1.0.0' && !kgExternalDatasetSchemas.includes(kgSchema)) return res.status(400).send('Only kgSchema is required and the only accepted value is minds/core/dataset/v1.0.0') - else return next() -} - -// TODO deprecated -datasetsRouter.get('/hasPreview', cacheMaxAge24Hr, async (req, res) => { - const { datasetName } = req.query - if (!datasetName || datasetName === '') return res.status(400).send(`datasetName as query param is required.`) - return res.status(200).json({ - preview: hasPreview({ datasetName }) - }) -}) - -datasetsRouter.get('/kgInfo', checkKgQuery, cacheMaxAge24Hr, async (req, res) => { - return res.status(400).send('Deprecated') - const { kgId } = req.query - const { kgSchema } = req.query - const { user } = req - - const tokenInRequest = req.headers['authorization'] && req.headers['authorization'].replace(/bearer\s+/i, '') - const reqUser = tokenInRequest && ({ - tokenset: { - access_token: tokenInRequest - } - }) - try{ - if (kgSchema === 'minds/core/dataset/v1.0.0') { - const stream = await getDatasetFromId({user: reqUser || user, kgId, returnAsStream: true}) - stream.on('error', getHandleErrorFn(req, res)).pipe(res) - } else { - const data = getExternalSchemaDatasets(kgId, kgSchema) - res.status(200).send(data) - } - }catch(e){ - getHandleErrorFn(req, res)(e) - } -}) - -datasetsRouter.get('/downloadKgFiles', checkKgQuery, async (req, res) => { - const { kgId } = req.query - const { user } = req - try { - const stream = await getDatasetFileAsZip({ user, kgId }) - res.setHeader('Content-Type', 'application/zip') - res.setHeader('Content-Disposition', `attachment; filename="${kgId}.zip"`) - stream.pipe(res).on('error', getHandleErrorFn(req, res)) - } catch (e) { - console.warn('datasets/index#downloadKgFiles', e) - res.status(400).send(e.toString()) - } -}) - -datasetsRouter.post('/bulkDownloadKgFiles', express.urlencoded({ extended: false }), async (req, res) => { - try{ - const { body = {}, user } = req - const { kgIds } = body - if (!kgIds) throw new Error(`kgIds needs to be populated`) - const arrKgIds = JSON.parse(kgIds) - if (!Array.isArray(arrKgIds)) { - throw new Error(`kgIds needs to be an array`) - } - if (arrKgIds.length === 0) { - throw new Error(`There needs to be at least 1 kgId in kgIds`) - } - const zip = archiver('zip') - for (const kgId of arrKgIds) { - zip.append( - await getDatasetFileAsZip({ user, kgId }), - { - name: `${kgId}.zip` - } - ) - } - zip.finalize() - res.setHeader('Content-disposition', `attachment; filename="bulkDsDownload.zip"`) - res.setHeader('Content-Type', 'application/zip') - zip.pipe(res) - }catch(e){ - res.status(400).send(e.toString()) - } -}) - -module.exports = { - router: datasetsRouter, - ready -} diff --git a/deploy/datasets/kgtos.md b/deploy/datasets/kgtos.md deleted file mode 100644 index 44bc5966c7674b3bfbd5d40ff535d9464bd4ba4a..0000000000000000000000000000000000000000 --- a/deploy/datasets/kgtos.md +++ /dev/null @@ -1,16 +0,0 @@ -The interactive viewer queries HBP Knowledge Graph Data Platform ("KG") for published datasets. - - -Access to the data and metadata provided through KG requires that you cite and acknowledge said data and metadata according to the Terms and Conditions of the Platform. - - -Citation requirements are outlined <https://www.humanbrainproject.eu/en/explore-the-brain/search-terms-of-use#citations> . - - -Acknowledgement requirements are outlined <https://www.humanbrainproject.eu/en/explore-the-brain/search-terms-of-use#acknowledgements> - - -These outlines are based on the authoritative Terms and Conditions are found <https://www.humanbrainproject.eu/en/explore-the-brain/search-terms-of-use> - - -If you do not accept the Terms & Conditions you are not permitted to access or use the KG to search for, to submit, to post, or to download any materials found there-in. diff --git a/deploy/datasets/query.js b/deploy/datasets/query.js deleted file mode 100644 index 4911e4f805627a38e5d08959eec2304ed752b7d9..0000000000000000000000000000000000000000 --- a/deploy/datasets/query.js +++ /dev/null @@ -1,301 +0,0 @@ -const fs = require('fs') -const request = require('request') -const URL = require('url') -const path = require('path') -const archiver = require('archiver') -const { getPreviewFile, hasPreview } = require('./supplements/previewFile') -const { constants, init: kgQueryUtilInit, getUserKGRequestParam, filterDatasets, filterDatasetsByRegion } = require('./util') -const ibc = require('./importIBS') -const { returnAdditionalDatasets } = require('../regionalFeatures') -const lruStore = require('../lruStore') - -const IAV_DS_CACHE_KEY = 'IAV_DS_CACHE_KEY' -const IAV_DS_TIMESTAMP_KEY = 'IAV_DS_TIMESTAMP_KEY' -const IAV_DS_REFRESH_TIMESTAMP_KEY = 'IAV_DS_REFRESH_TIMESTAMP_KEY' - -const { KG_ROOT, KG_SEARCH_VOCAB } = constants - -const KG_DATASET_SEARCH_QUERY_NAME = process.env.KG_DATASET_SEARCH_QUERY_NAME || 'interactiveViewerKgQuery-v1_0' -const KG_DATASET_SEARCH_PATH = process.env.KG_DATASET_SEARCH_PATH || '/minds/core/dataset/v1.0.0' - -const kgDatasetSearchFullString = `${KG_DATASET_SEARCH_PATH}/${KG_DATASET_SEARCH_QUERY_NAME}` - -const KG_PARAM = { - size: process.env.KG_SEARCH_SIZE || '1000', - vocab: KG_SEARCH_VOCAB -} - -const KG_QUERY_DATASETS_URL = new URL.URL(`${KG_ROOT}${kgDatasetSearchFullString}/instances`) -for (let key in KG_PARAM) { - KG_QUERY_DATASETS_URL.searchParams.set(key, KG_PARAM[key]) -} - -const getKgQuerySingleDatasetUrl = ({ kgId }) => { - const _newUrl = new URL.URL(KG_QUERY_DATASETS_URL) - _newUrl.pathname = `${_newUrl.pathname}/${kgId}` - return _newUrl -} - -const fetchDatasetFromKg = async ({ user } = {}) => { - - const { releasedOnly, option } = await getUserKGRequestParam({ user }) - return await new Promise((resolve, reject) => { - request( - `${KG_QUERY_DATASETS_URL}${releasedOnly ? '&databaseScope=RELEASED' : ''}`, - { - timeout: 60 * 1000, - ...option - }, - (err, resp, body) => { - if (err) return reject(err) - if (resp.statusCode >= 400) return reject(resp.statusCode) - resolve(body) - }) - }) -} - -const refreshCache = async () => { - await lruStore._initPr - const { store } = lruStore - store.set(IAV_DS_REFRESH_TIMESTAMP_KEY, new Date().toString()) - const text = await fetchDatasetFromKg() - await store.set(IAV_DS_CACHE_KEY, text) - await store.set(IAV_DS_REFRESH_TIMESTAMP_KEY, null) - await store.set(IAV_DS_TIMESTAMP_KEY, new Date().toString()) -} - -const getPublicDs = async () => { - console.log(`fetching public ds ...`) - - await lruStore._initPr - const { store } = lruStore - - let cachedData = await store.get(IAV_DS_CACHE_KEY) - if (!cachedData) { - await refreshCache() - cachedData = await store.get(IAV_DS_CACHE_KEY) - } - - const timestamp = await store.get(IAV_DS_TIMESTAMP_KEY) - const refreshTimestamp = await store.get(IAV_DS_REFRESH_TIMESTAMP_KEY) - - if ( - new Date() - new Date(timestamp) > 1e3 * 60 * 30 - ) { - if ( - !refreshTimestamp || - new Date() - new Date(refreshTimestamp) > 1e3 * 60 * 5 - ) { - refreshCache() - } - } - if (cachedData) { - const { results } = JSON.parse(cachedData) - return Promise.resolve(results) - } - throw new Error(`cacheData not defined!`) -} - -/** - * force get only public ds - * getting individual ds is too slow - */ -const getDs = ({ user }) => (false && user - ? fetchDatasetFromKg({ user }) - .then(text => JSON.parse(text)) - .then(({ results }) => results) - : getPublicDs() - ).then(async datasets => { - - /** - * populate the manually inserted dataset first - * this allows inserted dataset to overwrite the KG dataset (if needed) - */ - return [ - ...(await returnAdditionalDatasets()), - ...datasets, - ] - .reduce((acc, curr) => { - /** - * remove duplicates - */ - const existingEntryIdx = acc.findIndex(v => v['fullId'] === curr['fullId']) - if (existingEntryIdx >= 0) { - const itemToReturn = { - ...acc[existingEntryIdx], - ...curr, - parcellationRegion: [ - ...(curr['parcellationRegion'] || []), - ...(acc[existingEntryIdx]['parcellationRegion'] || []) - ] - } - const returnArr = [...acc] - returnArr.splice(existingEntryIdx, 1, itemToReturn) - return returnArr - } - else return acc.concat(curr) - }, []) - }) - -const getExternalSchemaDatasets = (kgId, kgSchema) => { - if (kgSchema === ibc.IBC_SCHEMA) { - return ibc.getIbcDatasetByFileName(kgId) - } -} - -/** - * on init, populate the cached data - */ -const init = async () => { - await kgQueryUtilInit() - return await getPublicDs() -} - -const dsNamesToExclude = [ - 'DiFuMo atlas', - 'Whole-brain parcellation', - 'Probabilistic cytoarchitectonic map', - 'Automated Anatomical Labeling (AAL1) atlas', - 'Maximum probability map', - 'Interpolated 3D map', - 'Corrected 3-D reconstruction and surface parcellation', - 'Probability map', - 'Probabilistic map', - // 'Reference delineations', - 'Atlas of the short fiber bundles ', - 'Desikan-Killiany Atlas', - 'GapMap', - 'Cytoarchitectonic areas', - 'Co-activation based parcellation', - 'CEREBRUM-7T', - 'Filter Activations of Convolutional Neuronal Networks' -] - -const getDatasetsByRegion = async ({ regionId, user }) => { - /** - * potentially add other sources of datasets - */ - const kgDatasets = await getDs({ user }) - const excludedDatasets = kgDatasets.filter(({ name }) => { - if (!name) return true - return !dsNamesToExclude.some(n => name.indexOf(n) === 0) - }) - return filterDatasetsByRegion([ - ...excludedDatasets, - /** - * other datasets, such ibc - */ - ...ibc.getIBCData(), - ], regionId) -} - -const getDatasets = ({ templateName, parcellationName, user }) => { - // Get Local datasets - const localDatasets = [ - ...ibc.getIBCData(), - // ... Add more dataset sources here - ] - - // Get all datasets and merge local ones - return getDs({ user }) - .then(json => { - json = [...json, ...localDatasets] - return filterDatasets(json, { templateName, parcellationName }) - }) -} - -const getPreview = ({ datasetName, templateSelected }) => getPreviewFile({ datasetName, templateSelected }) - -const getDatasetFromId = async ({ user, kgId, returnAsStream = false }) => { - const { option, releasedOnly } = await getUserKGRequestParam({ user }) - const _url = getKgQuerySingleDatasetUrl({ kgId }) - if (releasedOnly) _url.searchParams.set('databaseScope', 'RELEASED') - if (returnAsStream) return request(_url, option) - else return new Promise((resolve, reject) => { - request(_url, option, (err, resp, body) => { - if (err) return reject(err) - if (resp.statusCode >= 400) return reject(resp.statusCode) - return resolve(JSON.parse(body)) - }) - }) -} - -const renderPublication = ({ name, cite, doi }) => `${name} - ${cite} - DOI: ${doi} -` - -const prepareDatasetMetadata = ({ name, description, kgReference, contributors, publications }) => { - - return `${name} - -${description} - -${publications.map(renderPublication).join('\n')} -` -} - -let kgtos - -fs.readFile(path.join(__dirname, 'kgtos.md') , 'utf-8', (err, data) => { - if (err) console.warn(`reading kgtos Error`, err) - kgtos = data -}) - -const getTos = () => kgtos - -const getLicense = ({ licenseInfo }) => licenseInfo.map(({ name, url }) => `${name} -<${url}> -`).join('\n') - -const getDatasetFileAsZip = async ({ user, kgId } = {}) => { - if (!kgId) { - throw new Error('kgId must be defined') - } - - const dataset = await getDatasetFromId({ user, kgId }) - const { files, name: datasetName } = dataset - const zip = archiver('zip') - - /** - * append citation information - */ - zip.append(prepareDatasetMetadata(dataset), { - name: `README.txt` - }) - - /** - * append kg citation policy - */ - - zip.append(getLicense(dataset), { - name: `LICENSE.md` - }) - - /** - * append all of the files - */ - for (let file of files) { - const { name, absolutePath } = file - zip.append(request(absolutePath), { - name: path.join(datasetName, name) - }) - } - - zip.finalize() - - return zip -} - -module.exports = { - getDatasetFromId, - getDatasetFileAsZip, - init, - getDatasets, - getPreview, - hasPreview, - getTos, - getExternalSchemaDatasets, - getDatasetsByRegion, -} - diff --git a/deploy/datasets/query.spec.js b/deploy/datasets/query.spec.js deleted file mode 100644 index e69de29bb2d1d6434b8b29ae775ad8c2e48c5391..0000000000000000000000000000000000000000 diff --git a/deploy/datasets/spatialQuery.js b/deploy/datasets/spatialQuery.js deleted file mode 100644 index 11eec98d36a90bb53439f4be2f10b0fd6be95eff..0000000000000000000000000000000000000000 --- a/deploy/datasets/spatialQuery.js +++ /dev/null @@ -1,116 +0,0 @@ -const url = require('url') -const request = require('request') -const { getUserKGRequestParam, constants } = require('./util') -const { transformWaxholmV2NmToVoxel, transformWaxholmV2VoxelToNm } = require('./spatialXform/waxholmRat') - -/** - * TODO change to URL constructor to improve readability - */ - -const { KG_ROOT, KG_SEARCH_VOCAB } = constants - -const kgParams = { - vocab: KG_SEARCH_VOCAB -} - -const KG_SPATIAL_DATASET_SEARCH_QUERY_NAME = process.env.KG_SPATIAL_DATASET_SEARCH_QUERY_NAME || 'iav-spatial-query-v2' -const KG_SPATIAL_DATASET_SEARCH_PATH = process.env.KG_SPATIAL_DATASET_SEARCH_PATH || '/neuroglancer/seeg/coordinate/v1.0.0' - -const kgSpatialDatasetSearchFullString = `${KG_SPATIAL_DATASET_SEARCH_PATH}/${KG_SPATIAL_DATASET_SEARCH_QUERY_NAME}` - -const kgQuerySpatialDatasetUrl = new url.URL(`${KG_ROOT}${kgSpatialDatasetSearchFullString}/instances`) - -const defaultXform = (coord) => coord - -const getXformFn = (templateSpace) => { - const _ = {} - switch(templateSpace){ - case 'Waxholm Space rat brain MRI/DTI': - _['nmToVoxel'] = transformWaxholmV2NmToVoxel - _['voxelToNm'] = transformWaxholmV2VoxelToNm - break; - default: { - _['nmToVoxel'] = defaultXform - _['voxelToNm'] = defaultXform - } - } - return _ -} - -const getSpatialSearcParam = ({ templateName, queryArg }) => { - let kgSpaceName - const { nmToVoxel } = getXformFn(templateName) - - const coordsString = queryArg.split('__'); - const boundingBoxCorners = coordsString.map(coordString => coordString.split('_')) - const bbInVoxelSpace = boundingBoxCorners.map(nmToVoxel) - - switch (templateName){ - case 'Waxholm Space rat brain MRI/DTI': - kgSpaceName = 'waxholmV2' - break; - default: - kgSpaceName = templateName - } - return { - boundingBox: `${kgSpaceName}:${bbInVoxelSpace.map(v => v.join(',')).join(',')}` - } -} - - -const fetchSpatialDataFromKg = async ({ templateName, queryGeometry, queryArg, user }) => { - - const { releasedOnly, option } = await getUserKGRequestParam({ user }) - - const _ = getSpatialSearcParam({ templateName, queryGeometry, queryArg }) - const _url = new url.URL(kgQuerySpatialDatasetUrl) - - for (const key in kgParams){ - _url.searchParams.append(key, kgParams[key]) - } - - for (let key in _) { - _url.searchParams.append(key, _[key]) - } - if (releasedOnly) _url.searchParams.append('databaseScope', 'RELEASED') - - return await new Promise((resolve, reject) => { - request(_url, option, (err, resp, body) => { - if (err) return reject(err) - if (resp.statusCode >= 400) { - return reject(resp.statusCode) - } - const json = JSON.parse(body) - - const { voxelToNm } = getXformFn(templateName) - const _ = json.results.map(({ coordinates, ...rest}) => { - return { - ...rest, - geometry: { - type: 'point', - space: 'real', - position: voxelToNm([ - coordinates[0].x, - coordinates[0].y, - coordinates[0].z - ]) - } - } - }) - - return resolve(_) - }) - }) -} - - -const getSpatialDatasets = async ({ templateName, queryGeometry, queryArg, user }) => { - /** - * Local data can be injected here - */ - return await fetchSpatialDataFromKg({ templateName, queryGeometry, queryArg, user }) -} - -module.exports = { - getSpatialDatasets -} \ No newline at end of file diff --git a/deploy/datasets/spatialRouter.js b/deploy/datasets/spatialRouter.js deleted file mode 100644 index 5bfb78a2c241c4d134628a11dce2914842d9b430..0000000000000000000000000000000000000000 --- a/deploy/datasets/spatialRouter.js +++ /dev/null @@ -1,49 +0,0 @@ -const router = require('express').Router() -const { getSpatialDatasets } = require('./spatialQuery') - -const badRequestString = `spatialSearch endpoint uses param as follows: - -GET /templateName/<templateName>/<queryGeometry>/<queryArg> - -for example; - -GET /templateName/Colin/bbox/0_0_0__1_1_1` - -router.get('/templateName/:templateName/:queryGeometry/:queryArg', (req, res, next) => { - const { templateName, queryGeometry, queryArg } = req.params - let errorString = `` - if (!templateName) - errorString += `templateName is required\n` - if (!queryGeometry) - errorString += `queryGeometry is required\n` - if (!queryArg) - errorString += `queryArg is required\n` - if (errorString !== ``) - return next({ - code: 400, - error: errorString, - trace: 'dataset#spatialRouter' - }) - - const { user } = req - - getSpatialDatasets({ templateName, queryGeometry, queryArg, user }) - .then(arr => res.status(200).json(arr)) - .catch(error => { - next({ - code: 500, - error, - trace: 'dataset#spatialRouter#getSpatialDatasets' - }) - }) -}) - -router.use((req, res, next) => { - next({ - code: 400, - error: badRequestString, - trace: 'dataset#spatialRouter#notFound' - }) -}) - -module.exports = router \ No newline at end of file diff --git a/deploy/datasets/spatialXform/waxholmRat.js b/deploy/datasets/spatialXform/waxholmRat.js deleted file mode 100644 index 480013b5b98310c8d77c6f117d550d4126737db0..0000000000000000000000000000000000000000 --- a/deploy/datasets/spatialXform/waxholmRat.js +++ /dev/null @@ -1,33 +0,0 @@ - -/** - * perhaps export the xform fns into a different module - * ideally, in the future, KG can handle xform of voxel to nm - */ -const transformWaxholmV2NmToVoxel = (coord) => { - /** - * as waxholm is already in RAS, does not need to swap axis - */ - - /** - * atlas viewer applies translation (below in nm) in order to center the brain - * query already translates nm to mm, so the unit of transl should be [mm, mm, mm] - */ - const transl = [-9550781, -24355468, -9707031].map(v => v / 1e6) - - /** - * mm/voxel - */ - const voxelDim = [0.0390625, 0.0390625, 0.0390625] - return coord.map((v, idx) => (v - transl[idx]) / voxelDim[idx]) -} - -const transformWaxholmV2VoxelToNm = (coord) => { - const transl = [-9550781, -24355468, -9707031].map(v => v / 1e6) - const voxelDim = [0.0390625, 0.0390625, 0.0390625] - return coord.map((v, idx) => (v * voxelDim[idx]) + transl[idx]) -} - -module.exports = { - transformWaxholmV2NmToVoxel, - transformWaxholmV2VoxelToNm -} \ No newline at end of file diff --git a/deploy/datasets/supplements/.gitignore b/deploy/datasets/supplements/.gitignore deleted file mode 100644 index 16b9d46ca2ab51e9b5f8a9e5ba31f3ef5a906ab6..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/.gitignore +++ /dev/null @@ -1 +0,0 @@ -raw diff --git a/deploy/datasets/supplements/commonSense.js b/deploy/datasets/supplements/commonSense.js deleted file mode 100644 index a7673e9357785d06b5ef3dc70277cb45d70a3dd1..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/commonSense.js +++ /dev/null @@ -1,70 +0,0 @@ - -const humanTemplateSet = new Set([ - 'Big Brain (Histology)', - 'MNI Colin 27', - 'MNI 152 ICBM 2009c Nonlinear Asymmetric' -]) - -const humanParcellationSet = new Set([ - 'Grey/White matter', - 'Cytoarchitectonic Maps', - 'BigBrain Cortical Layers Segmentation', - 'JuBrain Cytoarchitectonic Atlas', - 'Fibre Bundle Atlas - Short Bundle', - 'Fibre Bundle Atlas - Long Bundle', - 'Cytoarchitectonic Maps' -]) - -const ratTemplateSet = new Set([ - 'Waxholm Space rat brain MRI/DTI' -]) - -const ratParcellationSet = new Set([ - 'Waxholm Space rat brain atlas v1', - 'Waxholm Space rat brain atlas v2', - 'Waxholm Space rat brain atlas v3' -]) - -const mouseTemplateSet = new Set([ - 'Allen adult mouse brain reference atlas V3' -]) - -const mouseParcellationSet = new Set([ - 'Allen Mouse Common Coordinate Framework v3 2017', - 'Allen Mouse Common Coordinate Framework v3 2015' -]) - -const dsIsHuman = ({ ds }) => ds && ds.species.some(species => /homo\ sapiens/i.test(species)) -const dsIsRat = ({ ds }) => ds && ds.species.some(species => /rattus\ norvegicus/i.test(species)) -const dsIsMouse = ({ ds }) => ds && ds.species.some(species => /mus\ musculus/i.test(species)) - -const queryIsMouse = ({ templateName, parcellationName }) => - (templateName && mouseTemplateSet.has(templateName)) - || (parcellationName && mouseParcellationSet.has(parcellationName)) - -const queryIsRat = ({ templateName, parcellationName }) => - (templateName && ratTemplateSet.has(templateName)) - || (parcellationName && ratParcellationSet.has(parcellationName)) - -const queryIsHuman = ({ templateName, parcellationName }) => - (templateName && humanTemplateSet.has(templateName)) - || (parcellationName && humanParcellationSet.has(parcellationName)) - -const getCommonSenseDsFilter = ({ templateName, parcellationName }) => { - const trueFilter = queryIsHuman({ templateName, parcellationName }) - ? dsIsHuman - : queryIsMouse({ templateName, parcellationName }) - ? dsIsMouse - : queryIsRat({ templateName, parcellationName }) - ? dsIsRat - : null - - return ds => trueFilter && trueFilter({ ds }) -} - -module.exports = { - getCommonSenseDsFilter, - dsIsHuman, - dsIsRat, - dsIsMouse -} \ No newline at end of file diff --git a/deploy/datasets/supplements/commonSense.spec.js b/deploy/datasets/supplements/commonSense.spec.js deleted file mode 100644 index 8412f28c8b05f67e71caddf3942f63c9c2b72795..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/commonSense.spec.js +++ /dev/null @@ -1,66 +0,0 @@ -const { - getCommonSenseDsFilter, - dsIsHuman, - dsIsRat, - dsIsMouse -} = require('./commonSense') - -const { expect } = require('chai') - -const bigbrain = require('../testData/bigbrain') -const waxholmv2 = require('../testData/waxholmv2') -const allen2015 = require('../testData/allen2015') - -describe('commonSense.js', () => { - describe('dsIsRat', () => { - - it('filters bigbrain datasets properly', () => { - for (const ds of bigbrain){ - const isHuman = dsIsRat({ ds }) - expect(isHuman).to.be.false - } - }) - }) - - describe('dsIsMouse', () => { - - it('filters bigbrain datasets properly', () => { - for (const ds of bigbrain){ - const isHuman = dsIsMouse({ ds }) - expect(isHuman).to.be.false - } - }) - }) - - describe('dsIsHuman', () => { - it('filters bigbrain datasets properly', () => { - - for (const ds of bigbrain){ - const isHuman = dsIsHuman({ ds }) - expect(isHuman).to.be.true - } - }) - - it('filters waxholm v2 data properly', () => { - - for (const ds of waxholmv2){ - const isHuman = dsIsHuman({ ds }) - expect(isHuman).to.be.false - } - }) - - it('filters allen data properly', () => { - - for (const ds of allen2015){ - const isHuman = dsIsHuman({ ds }) - expect(isHuman).to.be.false - } - - }) - }) - - describe('getCommonSenseDsFilter', () => { - // TODO - }) - -}) \ No newline at end of file diff --git a/deploy/datasets/supplements/data/allen.json b/deploy/datasets/supplements/data/allen.json deleted file mode 100644 index 58ad544920be956ac5dc0ad5c5f880c04eca0451..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/allen.json +++ /dev/null @@ -1,453 +0,0 @@ -[ - { - "Dataset name": "3D imaging of the vascular system of the mouse brain.", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus&p=2#Dataset/632636291a6ff5cb30c55821abaa55c4", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Cerebral cortex", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2F3248-7V", - "PLA": "774", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "3D reconstruction of the vascular system of the mouse brain.", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/a3fd14501d8a5c2ffcaee445ac6f8a5e", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Cerebral cortex", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493/3248-7V", - "PLA": "745", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Action potential dependent sIPSCs - from juvenile (P21-30) C57Bl6/J male mice", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/679c1e4beb7b5f8d7097f1835480a76f", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Field CA1", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2FH57G-ZK5", - "PLA": "15", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Arc expression in resting state", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus&p=2#Dataset/6a5980f16d1b3fd1422db723f9e2c6dc", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 4", - "Semantic link(s)": "Cerebrum", - "Coordinate-based": "Landmark-Reg", - "DOI": "https://doi.org/10.25493%2FMDRW-SWQ", - "PLA": "19", - "EMBARGO": "NO", - "Comments:": "right hemisphere" - }, - { - "Dataset name": "Brain-wide distribution of glutamate type 1 transporter protein (GLT1)", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/63bbb845ac6d2f1839f919c2ef0455bc", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Cerebrum", - "Coordinate-based": "QuickNII", - "DOI": "https://doi.org/10.25493%2FY147-2CE", - "PLA": "167", - "EMBARGO": "NO", - "Comments:": "also in WHS v2" - }, - { - "Dataset name": "Brainwide distribution and variance of amyloid-beta deposits in tg-ArcSwe mice", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/7e972a9c1c1fc2bb493d09512f6550d5", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Cerebrum", - "Coordinate-based": "QuickNII", - "DOI": "https://doi.org/10.25493%2FG6CQ-D4D", - "PLA": "138", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Ca2+/calmodulin-dependent protein kinase II tetracycline-transactivator expression: coronal sections (case 317.8)", - "Dataset URL": "https://www.humanbrainproject.eu/en/explore-the-brain/search/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/e15e4048955ed04112d2652d5a8ce587", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Cerebrum", - "Coordinate-based": "QuickNII", - "DOI": "https://doi.org/10.25493%2FW97C-01R", - "PLA": "case 317.8", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Cell density and distribution in the somatosensory cortex of the mouse brain", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/4e3d82a38ec816d970dff814c9fd2689", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Primary somatosensory area, lower limb; Primary motor area", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2F4HFC-6ZX", - "PLA": "", - "EMBARGO": "YES", - "Comments:": "" - }, - { - "Dataset name": "Comparative overview of brain-wide tetracycline-transactivator expression", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus&p=2#Dataset/48cffa543d49f446f0187902734dd631", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 4", - "Semantic link(s)": "Cerebrum", - "Coordinate-based": "QuickNII", - "DOI": "https://doi.org/10.25493%2FARKS-R7H", - "PLA": "N/A", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Cortical recordings of the Fmr1KO mouse model of Fragile X syndrome during slow wave activity", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/9f11bd320876be5d037164ce696a384f", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Prelimbic area; Primary motor area; Primary somatosensory area; Anteromedial visual area", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2F5VDM-SHH", - "PLA": "", - "EMBARGO": "YES", - "Comments:": "" - }, - { - "Dataset name": "Fluorescence cortical recording of mouse activity after stroke", - "Dataset URL": "https://www.humanbrainproject.eu/en/explore-the-brain/search/?facet_type[0]=Dataset#Dataset/4730b8c4ae603587a04b4c4362869f91", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 4", - "Semantic link(s)": "Anterior area; Anterior cingulate area, dorsal part; Anterolateral visual area; Posteromedial visual area; Primary motor area; Primary somatosensory area, barrel field; Primary somatosensory area, lower limb; Primary somatosensory area, nose; Primary somatosensory area, trunk; Primary somatosensory area, unassigned; Primary somatosensory area, upper limb; Primary visual area; Retrosplenial area, dorsal part; Retrosplenial area, lateral agranular part; Retrosplenial area, ventral part; Rostrolateral area; Secondary motor area", - "Coordinate-based": "Point coordinates", - "DOI": "https://doi.org/10.25493%2FZ9J0-ZZQ", - "PLA": "552", - "EMBARGO": "YES", - "Comments:": "" - }, - { - "Dataset name": "Hippocampal image volume derived from Thy1-GFP-M transgenic mouse", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/8fb1a664ca3390bae960cc1aa11f5827", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Hippocampal region", - "Coordinate-based": "Landmark-Reg", - "DOI": "https://doi.org/10.25493%2FPMDH-FW1", - "PLA": "20", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Neuropsin tetracycline-transactivator expression: coronal sections (case 1952)", - "Dataset URL": "https://www.humanbrainproject.eu/en/explore-the-brain/search/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/e0f992755e391b1dbdaf5b9669ffb49a", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Cerebrum", - "Coordinate-based": "QuickNII", - "DOI": "https://doi.org/10.25493%2F5H13-1Q0", - "PLA": "case 1952", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Neuropsin tetracycline-transactivator expression: coronal sections (case 2849)", - "Dataset URL": "https://www.humanbrainproject.eu/en/explore-the-brain/search/?facet_type[0]=Dataset#Dataset/cf9866eac157682b8320037236f54aa4", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 4", - "Semantic link(s)": "Cerebrum", - "Coordinate-based": "QuickNII", - "DOI": "https://doi.org/10.25493%2FWB6K-V72", - "PLA": "case 2849", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Neuropsin tetracycline-transactivator expression: horizontal sections (case 2877)", - "Dataset URL": "https://www.humanbrainproject.eu/en/explore-the-brain/search/?facet_type[0]=Dataset#Dataset/d56b1fe14bb84987a3a2340e21652b2d", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 5", - "Semantic link(s)": "Cerebrum", - "Coordinate-based": "QuickNII", - "DOI": "https://doi.org/10.25493%2FAYBB-BXV", - "PLA": "case 2877", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Parvalbumin interneruron distribution in the mouse brain", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus&p=2#Dataset/f740e7bb4e7a93647e3a9da50d6d965b", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 4", - "Semantic link(s)": "Cerebellum", - "Coordinate-based": "Landmark-Reg", - "DOI": "https://doi.org/10.25493%2FQSJE-H14", - "PLA": "21", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Pituitary homeobox 3 tetracycline-transactivator expression: coronal sections (case 3435)", - "Dataset URL": "https://www.humanbrainproject.eu/en/explore-the-brain/search/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus&p=2#Dataset/a028609d74b7ab5c66aafafff6ee512a", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 4", - "Semantic link(s)": "Cerebrum", - "Coordinate-based": "QuickNII", - "DOI": "https://doi.org/10.25493%2FFMGJ-4N3", - "PLA": "case 3435", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Pituitary homeobox 3 tetracycline-transactivator expression: coronal sections (case 6517)", - "Dataset URL": "https://www.humanbrainproject.eu/en/explore-the-brain/search/?facet_type[0]=Dataset#Dataset/e9b51ea64b41dc297b0914f7207bd4fb", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 5", - "Semantic link(s)": "Cerebrum", - "Coordinate-based": "QuickNII", - "DOI": "https://doi.org/10.25493%2FDTB3-0KP", - "PLA": "case 6517", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Pituitary homeobox 3 tetracycline-transactivator expression: horizontal sections (case 5154)", - "Dataset URL": "https://www.humanbrainproject.eu/en/explore-the-brain/search/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/2fa3662939761472e8488da76fe49085", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Cerebrum", - "Coordinate-based": "QuickNII", - "DOI": "https://doi.org/10.25493%2F2382-AYM", - "PLA": "case 5154", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Pituitary homeobox 3 tetracycline-transactivator expression: horizontal sections (case 6513)", - "Dataset URL": "https://www.humanbrainproject.eu/en/explore-the-brain/search/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/818289386f50cb9a791aae661a4c2f92", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Cerebrum", - "Coordinate-based": "QuickNII", - "DOI": "https://doi.org/10.25493%2F1AH7-T1A", - "PLA": "case 6513", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Prion promoter tetracycline-transactivator expression: coronal sections (case 388.12)", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/0715fc5d4958b0b73891cae874c37b29", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Cerebrum", - "Coordinate-based": "QuickNII", - "DOI": "https://doi.org/10.25493%2FT9P1-WH4", - "PLA": "case 388.12", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Purkinje cell distribution in mouse cerebellum", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus&p=2#Dataset/0d89723452a334fd8e7fbd040ba79376", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 4", - "Semantic link(s)": "Cerebellum", - "Coordinate-based": "Landmark-Reg", - "DOI": "https://doi.org/10.25493%2F76F0-87N", - "PLA": "22", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Purkinje cell protein 2 tetracycline-transactivator expression: coronal sections (case 1261)", - "Dataset URL": "https://www.humanbrainproject.eu/en/explore-the-brain/search/?facet_type[0]=Dataset#Dataset/ca8162a22e5f43fbbe1a1bed22303fdf", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 5", - "Semantic link(s)": "Cerebrum", - "Coordinate-based": "QuickNII", - "DOI": "https://doi.org/10.25493%2FA2EG-VPR", - "PLA": "case 1261", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Purkinje cell protein 2 tetracycline-transactivator expression: coronal sections (case 4340)", - "Dataset URL": "https://www.humanbrainproject.eu/en/explore-the-brain/search/?facet_type[0]=Dataset#Dataset/03fe9f1fcabedf124d9e6a0e457dca26", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 6", - "Semantic link(s)": "Cerebrum", - "Coordinate-based": "QuickNII", - "DOI": "https://doi.org/10.25493%2FYCGE-ADC", - "PLA": "case 4340", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Purkinje cell protein 2 tetracycline-transactivator expression: horizontal sections (case 3292)", - "Dataset URL": "https://www.humanbrainproject.eu/en/explore-the-brain/search/?facet_type[0]=Dataset#Dataset/70bdda26f3c38dda1790d2a24209100e", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 7", - "Semantic link(s)": "Cerebrum", - "Coordinate-based": "QuickNII", - "DOI": "https://doi.org/10.25493%2FD1PR-55A", - "PLA": "case 3292", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Recordings of cerebellar granule cells current-voltage relations", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/40a8ed8caae4989506d69fd290b67a90", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Vermal regions", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2FMDAR-XEB", - "PLA": "810", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Recordings of cerebellar neuronal firing induced by currents steps", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/5e245cf67a42a14a56bc43913f7bf28a", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Vermal regions", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2F4AF6-WSD", - "PLA": "810", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Recordings of excitatory postsynaptic currents from cerebellar neurons", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/a1ba394b5f353a67f9cec3549891d77b", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Vermal regions", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2FF2VK-MB4", - "PLA": "810", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Recordings of excitatory postsynaptic potentials from cerebellar neurons", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/2ea6f32e8dfd644d426b93aac0ae6eec", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Vermal regions", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2FG07Q-K87", - "PLA": "810", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Recordings of passive cellular parameters of cerebellar neurons", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/077778de710a9192795869a8885525ac", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Vermal regions", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2FMVHQ-4YA", - "PLA": "810", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Recordings of spontaneous firing of cerebellar interneurons (Golgi cells)", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/4197a2f5d71432349fb37ff3ad429580", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Vermal regions", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2FJQH3-0A4", - "PLA": "810", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "sIPSCs from juvenile (P21-30) C57B16/J male mice from hippocampal CA1 pyramidal neurons receiving input from PV+ and CCK+ interneurons", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus&p=2#Dataset/fb1dab2cc153f8de099996172ea4d8b8", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 4", - "Semantic link(s)": "Field CA1", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2FPHA7-5KZ", - "PLA": "12", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "sIPSCs from juvenile (P21-30) C57Bl6/J male mice from CA1 pyramidal neurons receiving input from PV+ interneurons", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/7877f8d8dd316f5c89f8438c0a337300", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Field CA1", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2F37YC-C88", - "PLA": "13", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Spike time dependent plasticity (STDP) data from adult C57BL/6 (wild-type) mice, positive pairing", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus&p=2#Dataset/c021f1e3c97bc761711fad76abf7d468", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 4", - "Semantic link(s)": "Hippocampal region", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2FK9VK-PPM", - "PLA": "", - "EMBARGO": "YES", - "Comments:": "" - }, - { - "Dataset name": "Spike time dependent plasticity (STDP) data from adult neuroligin-3 knock-in mice, positive pairing", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/3348338582a8e3e112b4ae66485404b1", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Hippocampal region", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2FJ43Z-KH0", - "PLA": "", - "EMBARGO": "YES", - "Comments:": "" - }, - { - "Dataset name": "Spike time dependent plasticity (STDP) data from neonate C57BL/6 (wild-type) mice, negative pairing", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus&p=2#Dataset/f54488f5b45bd42cb950678572bd3b15", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Hippocampal region", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2FG3W4-X3P", - "PLA": "", - "EMBARGO": "YES", - "Comments:": "" - }, - { - "Dataset name": "Spike time dependent plasticity (STDP) data from neonate C57BL/6 (wild-type) mice, positive pairing", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus&p=2#Dataset/ce6bc6d713c2a26485b0690e1f627972", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 4", - "Semantic link(s)": "Hippocampal region", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2FNKRY-KA7", - "PLA": "", - "EMBARGO": "YES", - "Comments:": "" - }, - { - "Dataset name": "Spike time dependent plasticity (STDP) data from neonate neuroligin-3 knock-in mice, positive pairing", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/1a6cbd0b55a13e7b8775d3417281a83f", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Hippocampal region", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2FPF1P-YSE", - "PLA": "", - "EMBARGO": "YES", - "Comments:": "" - }, - { - "Dataset name": "Spike time dependent plasticity (STDP) data from neonate neuroligin-3 knock-out mice, positive pairing", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/9c81f671e115a4057bc89be975076254", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Hippocampal region", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2FBT52-9CT", - "PLA": "", - "EMBARGO": "YES", - "Comments:": "" - }, - { - "Dataset name": "Spontaneous inhibitory post-synaptic currents recorded from CA1 pyramidal neurons of adult wild type B6/SJL mice", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus&p=2#Dataset/b8007a80fc0dccd56797473b45429787", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 4", - "Semantic link(s)": "Field CA1", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2F85F8-M92", - "PLA": "14", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Spontaneous inhibitory post-synaptic currents recorded from CA1 pyramidal neurons of adult wild type Tg2576 mice", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/57f6354117bbee6d961f8e36d6360c77", - "Reference atlas": "Allen Mouse Common Coordinate Framework, version 3", - "Semantic link(s)": "Field CA1", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2FCTAV-Q45", - "PLA": "11", - "EMBARGO": "NO", - "Comments:": "" - } -] \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_AIPS_IP1.md b/deploy/datasets/supplements/data/ibc/left_AIPS_IP1.md deleted file mode 100644 index 37d1982c4e59aee58ba7ae742c953fc2a508ae3c..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_AIPS_IP1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hIP1 (IPS) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hIP1 (IPS) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-05 | ses-04 | task-archi_emotional_dir-ap_face_trusty| -| sub-05 | ses-04 | dir-ap_face_trusty| -| sub-07 | ses-11 | sn_before-after_event| -| sub-07 | ses-04 | dir-ap_reading-checkerboard| -| sub-07 | ses-04 | task-archi_standard_dir-ap_reading-checkerboard| -| sub-06 | ses-01 | task-hcp_gambling_dir-ap_punishment-reward| -| sub-06 | ses-01 | dir-ap_punishment-reward| -| sub-07 | ses-12 | task-mtt_we_dir-ap_run-03_we_before-after_event| -| sub-07 | ses-12 | dir-ap_run-03_we_before-after_event| -| sub-07 | ses-12 | we_before-after_event| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_AIPS_IP2.md b/deploy/datasets/supplements/data/ibc/left_AIPS_IP2.md deleted file mode 100644 index 45fe539ae866641384e7953313180124915511c3..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_AIPS_IP2.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hIP2 (IPS) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hIP2 (IPS) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-06 | ses-01 | task-hcp_gambling_dir-ap_punishment-reward| -| sub-06 | ses-01 | dir-ap_punishment-reward| -| sub-07 | ses-04 | grasp-orientation| -| sub-07 | ses-04 | dir-ffx_grasp-orientation| -| sub-07 | ses-04 | task-archi_spatial_ffx_grasp-orientation| -| sub-15 | ses-01 | dir-ap_object_grasp| -| sub-15 | ses-01 | task-archi_spatial_dir-ap_object_grasp| -| sub-15 | ses-01 | task-archi_spatial_dir-ap_object_orientation| -| sub-15 | ses-01 | dir-ap_object_orientation| -| sub-13 | ses-04 | task-archi_standard_dir-pa_computation-sentences| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_AIPS_IP3.md b/deploy/datasets/supplements/data/ibc/left_AIPS_IP3.md deleted file mode 100644 index f1748f7f266937cd00f391115303e0e7023fd95f..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_AIPS_IP3.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hIP3 (IPS) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hIP3 (IPS) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-01 | ses-07 | dir-pa_rotation_hand| -| sub-01 | ses-07 | task-archi_spatial_dir-pa_rotation_hand| -| sub-01 | ses-07 | task-archi_standard_ffx_video_computation| -| sub-01 | ses-07 | dir-ffx_video_computation| -| sub-01 | ses-07 | video_computation| -| sub-12 | ses-16 | dir-ffx_painting_linear| -| sub-12 | ses-16 | task-preference_paintings_ffx_painting_linear| -| sub-12 | ses-16 | painting_linear| -| sub-01 | ses-07 | task-archi_standard_dir-ap_video_computation| -| sub-01 | ses-07 | dir-ap_video_computation| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Amygdala_CM.md b/deploy/datasets/supplements/data/ibc/left_Amygdala_CM.md deleted file mode 100644 index 27c74c13b90078b57eecd2429e706ea0d852e2a2..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Amygdala_CM.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in CM (Amygdala) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in CM (Amygdala) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-05 | ses-04 | task-archi_social_dir-ap_triangle_mental| -| sub-05 | ses-04 | dir-ap_triangle_mental| -| sub-06 | ses-04 | task-archi_social_dir-ap_false_belief-mechanistic_video| -| sub-06 | ses-04 | dir-ap_false_belief-mechanistic_video| -| sub-15 | ses-14 | task-mtt_we_dir-pa_run-01_eastside-westside_event| -| sub-15 | ses-14 | dir-pa_run-01_eastside-westside_event| -| sub-07 | ses-03 | dir-pa_run-00_jabberwocky-pseudo| -| sub-07 | ses-03 | task-rsvp_language_dir-pa_run-00_jabberwocky-pseudo| -| sub-08 | ses-04 | dir-ap_run-05_probe| -| sub-08 | ses-04 | task-rsvp_language_dir-ap_run-05_probe| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Amygdala_IF.md b/deploy/datasets/supplements/data/ibc/left_Amygdala_IF.md deleted file mode 100644 index 250bd1c7afaef6416338b916afe4310093eff8c9..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Amygdala_IF.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in IF (Amygdala) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in IF (Amygdala) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-15 | ses-14 | task-mtt_we_dir-pa_run-01_eastside-westside_event| -| sub-15 | ses-14 | dir-pa_run-01_eastside-westside_event| -| sub-06 | ses-11 | dir-pa_run-02_we_before-after_event| -| sub-06 | ses-11 | task-mtt_we_dir-pa_run-02_we_before-after_event| -| sub-06 | ses-04 | task-archi_standard_dir-ap_horizontal-vertical| -| sub-06 | ses-04 | dir-ap_horizontal-vertical| -| sub-07 | ses-03 | dir-pa_run-00_jabberwocky-pseudo| -| sub-07 | ses-03 | task-rsvp_language_dir-pa_run-00_jabberwocky-pseudo| -| sub-08 | ses-11 | task-mtt_we_dir-pa_run-02_we_all_time-space_cue| -| sub-08 | ses-11 | dir-pa_run-02_we_all_time-space_cue| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Amygdala_LB.md b/deploy/datasets/supplements/data/ibc/left_Amygdala_LB.md deleted file mode 100644 index 380bca167b0fd68bfceb66d6bb9435baaef005f9..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Amygdala_LB.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in LB (Amygdala) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in LB (Amygdala) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-08 | ses-11 | task-mtt_we_dir-pa_run-02_we_all_time-space_cue| -| sub-08 | ses-11 | dir-pa_run-02_we_all_time-space_cue| -| sub-06 | ses-04 | task-archi_standard_dir-ap_horizontal-vertical| -| sub-06 | ses-04 | dir-ap_horizontal-vertical| -| sub-09 | ses-05 | task-archi_standard_dir-pa_left-right_button_press| -| sub-09 | ses-05 | dir-pa_left-right_button_press| -| sub-12 | ses-16 | task-preference_paintings_dir-pa_painting_linear| -| sub-12 | ses-16 | dir-pa_painting_linear| -| sub-06 | ses-11 | dir-pa_run-02_we_before-after_event| -| sub-06 | ses-11 | task-mtt_we_dir-pa_run-02_we_before-after_event| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Amygdala_MF.md b/deploy/datasets/supplements/data/ibc/left_Amygdala_MF.md deleted file mode 100644 index 0accbb06c8e5ff4e27f417861d1b9042cf103d03..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Amygdala_MF.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in MF (Amygdala) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in MF (Amygdala) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-03 | dir-pa_run-00_jabberwocky-pseudo| -| sub-07 | ses-03 | task-rsvp_language_dir-pa_run-00_jabberwocky-pseudo| -| sub-06 | ses-04 | task-archi_social_dir-ap_false_belief-mechanistic_video| -| sub-06 | ses-04 | dir-ap_false_belief-mechanistic_video| -| sub-05 | ses-04 | task-archi_social_dir-ap_triangle_mental| -| sub-05 | ses-04 | dir-ap_triangle_mental| -| sub-05 | ses-04 | task-archi_emotional_dir-ap_expression_intention-gender| -| sub-05 | ses-04 | dir-ap_expression_intention-gender| -| sub-05 | ses-00 | task-archi_standard_dir-pa_left-right_button_press| -| sub-05 | ses-00 | dir-pa_left-right_button_press| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Amygdala_SF.md b/deploy/datasets/supplements/data/ibc/left_Amygdala_SF.md deleted file mode 100644 index d2162a901aa2dbe4583091c54df0195e404397b3..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Amygdala_SF.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in SF (Amygdala) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in SF (Amygdala) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-11 | dir-pa_run-01_northside-southside_event| -| sub-07 | ses-11 | task-mtt_sn_dir-pa_run-01_northside-southside_event| -| sub-07 | ses-11 | dir-ap_run-03_southside-northside_event| -| sub-07 | ses-11 | task-mtt_sn_dir-ap_run-03_southside-northside_event| -| sub-05 | ses-20 | task-self_dir-pa_run-01_encode_self-other| -| sub-05 | ses-20 | dir-pa_run-01_encode_self-other| -| sub-12 | ses-16 | task-preference_paintings_dir-pa_painting_linear| -| sub-12 | ses-16 | dir-pa_painting_linear| -| sub-12 | ses-03 | dir-ap_triangle_mental-random| -| sub-12 | ses-03 | task-archi_social_dir-ap_triangle_mental-random| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Amygdala_VTM.md b/deploy/datasets/supplements/data/ibc/left_Amygdala_VTM.md deleted file mode 100644 index 36d05f9f748bbb49697d567546d7690c8e4b078e..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Amygdala_VTM.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in VTM (Amygdala) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in VTM (Amygdala) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-06 | ses-11 | dir-pa_run-02_we_before-after_event| -| sub-06 | ses-11 | task-mtt_we_dir-pa_run-02_we_before-after_event| -| sub-08 | ses-04 | dir-ap_run-05_probe| -| sub-08 | ses-04 | task-rsvp_language_dir-ap_run-05_probe| -| sub-07 | ses-11 | task-mtt_sn_dir-ap_run-03_sn_all_space-time_cue| -| sub-07 | ses-11 | dir-ap_run-03_sn_all_space-time_cue| -| sub-05 | ses-04 | task-archi_emotional_dir-ap_expression_intention-gender| -| sub-05 | ses-04 | dir-ap_expression_intention-gender| -| sub-01 | ses-04 | 2back_body| -| sub-12 | ses-00 | task-archi_standard_dir-ap_computation| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Auditory_Te10.md b/deploy/datasets/supplements/data/ibc/left_Auditory_Te10.md deleted file mode 100644 index de332fa2319f3269996b5412f8999fa5f08db206..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Auditory_Te10.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area TE 1.0 (HESCHL) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area TE 1.0 (HESCHL) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-02 | ses-01 | dir-ffx_mechanistic_audio| -| sub-02 | ses-01 | task-archi_social_ffx_mechanistic_audio| -| sub-02 | ses-01 | mechanistic_audio| -| sub-09 | ses-02 | 0back-2back| -| sub-02 | ses-01 | task-archi_social_dir-pa_mechanistic_audio| -| sub-09 | ses-02 | task-hcp_wm_ffx_0back-2back| -| sub-09 | ses-02 | dir-ffx_0back-2back| -| sub-02 | ses-01 | dir-pa_mechanistic_audio| -| sub-02 | ses-01 | dir-ap_false_belief_audio| -| sub-02 | ses-01 | task-archi_social_dir-ap_false_belief_audio| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Auditory_Te11.md b/deploy/datasets/supplements/data/ibc/left_Auditory_Te11.md deleted file mode 100644 index dafe09f4ebb6a4f3b491f45c748720cd3c391241..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Auditory_Te11.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area TE 1.1 (HESCHL) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area TE 1.1 (HESCHL) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-09 | ses-17 | task-pain_movie_dir-ap_movie_pain| -| sub-09 | ses-17 | dir-ap_movie_pain| -| sub-02 | ses-01 | listening-reading| -| sub-02 | ses-00 | task-archi_social_dir-ap_non_speech_sound| -| sub-02 | ses-00 | dir-ap_false_belief_audio| -| sub-02 | ses-01 | task-archi_standard_ffx_listening-reading| -| sub-02 | ses-01 | non_speech_sound| -| sub-02 | ses-01 | dir-ffx_non_speech_sound| -| sub-02 | ses-00 | dir-ap_non_speech_sound| -| sub-02 | ses-01 | task-archi_social_ffx_non_speech_sound| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Auditory_Te12.md b/deploy/datasets/supplements/data/ibc/left_Auditory_Te12.md deleted file mode 100644 index da96b3812855f5266a281f900ecd4a564b415474..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Auditory_Te12.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area TE 1.2 (HESCHL) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area TE 1.2 (HESCHL) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-08 | ses-00 | dir-pa_audio_right_button_press| -| sub-08 | ses-00 | task-archi_standard_dir-pa_audio_right_button_press| -| sub-02 | ses-00 | dir-pa_speech-non_speech| -| sub-02 | ses-00 | task-archi_social_dir-pa_speech-non_speech| -| sub-02 | ses-01 | speech-non_speech| -| sub-02 | ses-01 | task-archi_social_ffx_speech-non_speech| -| sub-02 | ses-01 | dir-ffx_speech-non_speech| -| sub-02 | ses-01 | dir-pa_speech-non_speech| -| sub-02 | ses-01 | task-archi_social_dir-pa_speech-non_speech| -| sub-05 | ses-00 | dir-ap_audio_left_button_press| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Bforebrain_123.md b/deploy/datasets/supplements/data/ibc/left_Bforebrain_123.md deleted file mode 100644 index c97af1bf9c8e315be4b507a2643325689f983851..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Bforebrain_123.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Ch 123 (Basal Forebrain) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Ch 123 (Basal Forebrain) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-06 | ses-12 | task-mtt_sn_dir-pa_run-01_sn_time-space_event| -| sub-06 | ses-12 | dir-pa_run-01_sn_time-space_event| -| sub-09 | ses-04 | dir-pa_run-00_word-pseudo| -| sub-09 | ses-04 | task-rsvp_language_dir-pa_run-00_word-pseudo| -| sub-06 | ses-12 | dir-pa_run-02_sn_after-before_event| -| sub-06 | ses-12 | task-mtt_sn_dir-pa_run-02_sn_after-before_event| -| sub-04 | ses-16 | task-theory_of_mind_dir-ap_belief| -| sub-04 | ses-16 | dir-ap_belief| -| sub-01 | ses-04 | 2back_body| -| sub-12 | ses-00 | task-archi_standard_dir-ap_computation| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Bforebrain_4.md b/deploy/datasets/supplements/data/ibc/left_Bforebrain_4.md deleted file mode 100644 index 5da1ca06692d057c753e3fc2588bf4e8dd2da5cc..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Bforebrain_4.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Ch 4 (Basal Forebrain) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Ch 4 (Basal Forebrain) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-05 | ses-04 | task-archi_social_dir-ap_triangle_mental| -| sub-05 | ses-04 | dir-ap_triangle_mental| -| sub-06 | ses-04 | task-archi_social_dir-ap_false_belief-mechanistic_video| -| sub-06 | ses-04 | dir-ap_false_belief-mechanistic_video| -| sub-07 | ses-03 | dir-pa_run-00_jabberwocky-pseudo| -| sub-07 | ses-03 | task-rsvp_language_dir-pa_run-00_jabberwocky-pseudo| -| sub-15 | ses-14 | task-mtt_we_dir-pa_run-01_eastside-westside_event| -| sub-15 | ses-14 | dir-pa_run-01_eastside-westside_event| -| sub-11 | ses-05 | task-archi_emotional_dir-ap_face_gender-control| -| sub-11 | ses-05 | dir-ap_face_gender-control| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Broca_44.md b/deploy/datasets/supplements/data/ibc/left_Broca_44.md deleted file mode 100644 index fa3228e5f29275a1227a50ca483a0685d5387c22..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Broca_44.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 44 (IFG) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 44 (IFG) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-02 | ses-06 | dir-pa_run-02_sentence-jabberwocky| -| sub-02 | ses-06 | task-rsvp_language_dir-pa_run-02_sentence-jabberwocky| -| sub-13 | ses-04 | dir-ffx_reading-checkerboard| -| sub-13 | ses-04 | task-archi_standard_ffx_reading-checkerboard| -| sub-13 | ses-04 | reading-checkerboard| -| sub-15 | ses-01 | task-archi_emotional_dir-pa_trusty_and_intention-gender| -| sub-15 | ses-01 | dir-pa_trusty_and_intention-gender| -| sub-13 | ses-00 | task-archi_standard_dir-pa_video_computation| -| sub-13 | ses-00 | dir-pa_video_computation| -| sub-01 | ses-07 | task-archi_emotional_dir-pa_expression_intention-gender| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Broca_45.md b/deploy/datasets/supplements/data/ibc/left_Broca_45.md deleted file mode 100644 index 1344e47bc1cdc433dc471cc650359e1d6ad9ad34..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Broca_45.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 45 (IFG) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 45 (IFG) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-09 | ses-04 | dir-pa_run-01_complex-consonant_string| -| sub-09 | ses-04 | task-rsvp_language_dir-pa_run-01_complex-consonant_string| -| sub-11 | ses-00 | task-archi_standard_ffx_cognitive-motor| -| sub-11 | ses-00 | cognitive-motor| -| sub-11 | ses-00 | task-archi_standard_dir-pa_cognitive-motor| -| sub-11 | ses-00 | dir-pa_cognitive-motor| -| sub-11 | ses-00 | dir-ffx_cognitive-motor| -| sub-05 | ses-03 | dir-pa_run-02_word-pseudo| -| sub-05 | ses-03 | task-rsvp_language_dir-pa_run-02_word-pseudo| -| sub-14 | ses-01 | dir-ap_expression_intention-gender| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Cerebellum_Ndentd.md b/deploy/datasets/supplements/data/ibc/left_Cerebellum_Ndentd.md deleted file mode 100644 index 45e5687183509dc0e92693ba6c821f92c802563b..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Cerebellum_Ndentd.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Dorsal Dentate Nucleus (Cerebellum) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Dorsal Dentate Nucleus (Cerebellum) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-06 | ses-15 | dir-ap_painting_quadratic| -| sub-06 | ses-15 | task-preference_paintings_dir-ap_painting_quadratic| -| sub-01 | ses-04 | 2back_body| -| sub-12 | ses-00 | task-archi_standard_dir-ap_computation| -| sub-13 | ses-17 | dir-pa_enumeration_linear| -| sub-07 | ses-03 | task-rsvp_language_dir-ap_run-04_jabberwocky| -| sub-13 | ses-04 | task-archi_standard_ffx_sentences| -| sub-14 | ses-01 | dir-pa_non_speech_sound| -| sub-13 | ses-00 | dir-pa_right-left_button_press| -| sub-14 | ses-04 | dir-ap_run-05_word_list| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Cerebellum_Ndentv.md b/deploy/datasets/supplements/data/ibc/left_Cerebellum_Ndentv.md deleted file mode 100644 index 08d652e8e303403decb45212e524b467e12e2f6d..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Cerebellum_Ndentv.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Ventral Dentate Nucleus (Cerebellum) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Ventral Dentate Nucleus (Cerebellum) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-01 | ses-04 | 2back_body| -| sub-12 | ses-00 | task-archi_standard_dir-ap_computation| -| sub-13 | ses-17 | dir-pa_enumeration_linear| -| sub-07 | ses-03 | task-rsvp_language_dir-ap_run-04_jabberwocky| -| sub-13 | ses-04 | task-archi_standard_ffx_sentences| -| sub-14 | ses-01 | dir-pa_non_speech_sound| -| sub-13 | ses-00 | dir-pa_right-left_button_press| -| sub-14 | ses-04 | dir-ap_run-05_word_list| -| sub-08 | ses-04 | task-rsvp_language_dir-pa_run-02_word_list| -| sub-06 | ses-00 | task-archi_standard_dir-ap_reading-listening| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Cerebellum_Nfast.md b/deploy/datasets/supplements/data/ibc/left_Cerebellum_Nfast.md deleted file mode 100644 index 10f8a840d5c67facb343060ecfcf26ab22cd80be..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Cerebellum_Nfast.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Fastigial Nucleus (Cerebellum) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Fastigial Nucleus (Cerebellum) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-01 | ses-04 | 2back_body| -| sub-12 | ses-00 | task-archi_standard_dir-ap_computation| -| sub-13 | ses-17 | dir-pa_enumeration_linear| -| sub-07 | ses-03 | task-rsvp_language_dir-ap_run-04_jabberwocky| -| sub-13 | ses-04 | task-archi_standard_ffx_sentences| -| sub-14 | ses-01 | dir-pa_non_speech_sound| -| sub-13 | ses-00 | dir-pa_right-left_button_press| -| sub-14 | ses-04 | dir-ap_run-05_word_list| -| sub-08 | ses-04 | task-rsvp_language_dir-pa_run-02_word_list| -| sub-06 | ses-00 | task-archi_standard_dir-ap_reading-listening| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Cerebellum_Ninterp.md b/deploy/datasets/supplements/data/ibc/left_Cerebellum_Ninterp.md deleted file mode 100644 index 9017572fb4bdbd50792ef27ee68d95579e31e55a..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Cerebellum_Ninterp.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Interposed Nucleus (Cerebellum) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Interposed Nucleus (Cerebellum) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-06 | ses-15 | dir-ap_painting_quadratic| -| sub-06 | ses-15 | task-preference_paintings_dir-ap_painting_quadratic| -| sub-01 | ses-04 | 2back_body| -| sub-12 | ses-00 | task-archi_standard_dir-ap_computation| -| sub-13 | ses-17 | dir-pa_enumeration_linear| -| sub-07 | ses-03 | task-rsvp_language_dir-ap_run-04_jabberwocky| -| sub-13 | ses-04 | task-archi_standard_ffx_sentences| -| sub-14 | ses-01 | dir-pa_non_speech_sound| -| sub-13 | ses-00 | dir-pa_right-left_button_press| -| sub-14 | ses-04 | dir-ap_run-05_word_list| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Cingulum_25.md b/deploy/datasets/supplements/data/ibc/left_Cingulum_25.md deleted file mode 100644 index a93578fe25e4cd25c806ff33f8c149386084f646..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Cingulum_25.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 25 (sACC) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 25 (sACC) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-13 | ses-21 | task-self_dir-pa_run-01_recognition_self-other| -| sub-13 | ses-21 | dir-pa_run-01_recognition_self-other| -| sub-14 | ses-03 | 2back-0back| -| sub-14 | ses-03 | dir-ffx_2back-0back| -| sub-14 | ses-03 | task-hcp_wm_ffx_2back-0back| -| sub-07 | ses-11 | dir-pa_run-01_sn_all_space-time_cue| -| sub-07 | ses-11 | task-mtt_sn_dir-pa_run-01_sn_all_space-time_cue| -| sub-05 | ses-03 | task-rsvp_language_dir-pa_run-00_complex| -| sub-05 | ses-03 | dir-pa_run-00_complex| -| sub-01 | ses-20 | dir-pa_run-02_vstm_quadratic| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Cingulum_33.md b/deploy/datasets/supplements/data/ibc/left_Cingulum_33.md deleted file mode 100644 index 31987dab8c65297b69e8817e2e6073d1be2e99b6..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Cingulum_33.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 33 (ACC) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 33 (ACC) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-16 | dir-pa_movie_pain| -| sub-07 | ses-16 | task-pain_movie_dir-pa_movie_pain| -| sub-05 | ses-11 | dir-ap_run-03_we_after-before_event| -| sub-05 | ses-11 | task-mtt_we_dir-ap_run-03_we_after-before_event| -| sub-07 | ses-03 | dir-pa_run-00_pseudo-consonant_string| -| sub-07 | ses-03 | task-rsvp_language_dir-pa_run-00_pseudo-consonant_string| -| sub-09 | ses-05 | dir-ap_triangle_mental| -| sub-09 | ses-05 | task-archi_social_dir-ap_triangle_mental| -| sub-12 | ses-03 | dir-ap_face_gender-control| -| sub-12 | ses-03 | task-archi_emotional_dir-ap_face_gender-control| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Cingulum_p24ab.md b/deploy/datasets/supplements/data/ibc/left_Cingulum_p24ab.md deleted file mode 100644 index e1b2affb5822c6073cd7b87a3eeac3eb1798175a..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Cingulum_p24ab.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area p24ab (pACC) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area p24ab (pACC) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-09 | ses-05 | dir-ap_triangle_mental| -| sub-09 | ses-05 | task-archi_social_dir-ap_triangle_mental| -| sub-06 | ses-21 | task-self_dir-ap_run-04_encode_self-other| -| sub-06 | ses-21 | dir-ap_run-04_encode_self-other| -| sub-07 | ses-03 | dir-pa_run-00_pseudo-consonant_string| -| sub-07 | ses-03 | task-rsvp_language_dir-pa_run-00_pseudo-consonant_string| -| sub-07 | ses-16 | dir-pa_movie_pain| -| sub-07 | ses-16 | task-pain_movie_dir-pa_movie_pain| -| sub-15 | ses-02 | punishment-reward| -| sub-15 | ses-02 | task-hcp_gambling_ffx_punishment-reward| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Cingulum_p24c.md b/deploy/datasets/supplements/data/ibc/left_Cingulum_p24c.md deleted file mode 100644 index 95407300a6d4237727fdf883b2f1083e42d7e374..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Cingulum_p24c.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area p24c (pACC) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area p24c (pACC) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-08 | ses-11 | task-mtt_we_dir-pa_run-02_we_time-space_event| -| sub-08 | ses-11 | dir-pa_run-02_we_time-space_event| -| sub-02 | ses-00 | task-archi_social_ffx_false_belief-mechanistic_video| -| sub-02 | ses-00 | false_belief-mechanistic_video| -| sub-02 | ses-00 | dir-ffx_false_belief-mechanistic_video| -| sub-06 | ses-21 | task-self_dir-ap_run-04_encode_self-other| -| sub-06 | ses-21 | dir-ap_run-04_encode_self-other| -| sub-06 | ses-16 | dir-pa_movie_mental| -| sub-06 | ses-16 | task-pain_movie_dir-pa_movie_mental| -| sub-07 | ses-03 | dir-pa_run-00_pseudo-consonant_string| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Cingulum_p32.md b/deploy/datasets/supplements/data/ibc/left_Cingulum_p32.md deleted file mode 100644 index 499e3acacce680854aa86e2a20b47533a89efc57..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Cingulum_p32.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area p32 (pACC) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area p32 (pACC) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-13 | ses-21 | dir-pa_run-02_encode_self-other| -| sub-13 | ses-21 | task-self_dir-pa_run-02_encode_self-other| -| sub-11 | ses-12 | dir-ap_run-03_sn_all_space-time_cue| -| sub-11 | ses-12 | task-mtt_sn_dir-ap_run-03_sn_all_space-time_cue| -| sub-07 | ses-03 | task-rsvp_language_dir-pa_run-01_pseudo-consonant_string| -| sub-07 | ses-03 | dir-pa_run-01_pseudo-consonant_string| -| sub-05 | ses-20 | encode_self-other| -| sub-07 | ses-02 | dir-ap_0back-2back| -| sub-07 | ses-02 | task-hcp_wm_dir-ap_0back-2back| -| sub-09 | ses-22 | task-self_dir-pa_run-02_recognition_self-other| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Cingulum_s24.md b/deploy/datasets/supplements/data/ibc/left_Cingulum_s24.md deleted file mode 100644 index db647528c2028dfc098d7dd529a5673d2a273fa4..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Cingulum_s24.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area s24 (sACC) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area s24 (sACC) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-05 | ses-03 | task-rsvp_language_dir-pa_run-00_complex| -| sub-05 | ses-03 | dir-pa_run-00_complex| -| sub-12 | ses-01 | dir-ap_math-story| -| sub-12 | ses-01 | task-hcp_language_dir-ap_math-story| -| sub-01 | ses-20 | dir-ap_enumeration_quadratic| -| sub-01 | ses-20 | task-enumeration_dir-ap_enumeration_quadratic| -| sub-07 | ses-11 | dir-pa_run-01_sn_all_space-time_cue| -| sub-07 | ses-11 | task-mtt_sn_dir-pa_run-01_sn_all_space-time_cue| -| sub-01 | ses-20 | dir-pa_run-02_vstm_quadratic| -| sub-01 | ses-20 | task-vstm_dir-pa_run-02_vstm_quadratic| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Cingulum_s32.md b/deploy/datasets/supplements/data/ibc/left_Cingulum_s32.md deleted file mode 100644 index ed6a37ab2c35924bcc481c5214e5dd722adfbf23..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Cingulum_s32.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area s32 (sACC) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area s32 (sACC) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-04 | task-archi_emotional_dir-ap_face_trusty-control| -| sub-07 | ses-04 | dir-ap_face_trusty-control| -| sub-09 | ses-05 | dir-ap_face_trusty-gender| -| sub-09 | ses-05 | task-archi_emotional_dir-ap_face_trusty-gender| -| sub-12 | ses-00 | task-archi_standard_dir-ap_left-right_button_press| -| sub-12 | ses-00 | dir-ap_left-right_button_press| -| sub-07 | ses-03 | task-rsvp_language_dir-pa_run-02_jabberwocky-pseudo| -| sub-07 | ses-03 | dir-pa_run-02_jabberwocky-pseudo| -| sub-04 | ses-21 | task-self_dir-pa_run-01_recognition_self-other| -| sub-04 | ses-21 | dir-pa_run-01_recognition_self-other| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_FrontalPole_Fp1.md b/deploy/datasets/supplements/data/ibc/left_FrontalPole_Fp1.md deleted file mode 100644 index 073e0739bec6a6fc6b1d01871a2adffd21edf9d1..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_FrontalPole_Fp1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area Fp1 (FPole) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area Fp1 (FPole) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-14 | ses-03 | task-hcp_relational_dir-pa_relational-match| -| sub-14 | ses-03 | dir-pa_relational-match| -| sub-05 | ses-01 | dir-ap_story| -| sub-05 | ses-01 | task-hcp_language_dir-ap_story| -| sub-12 | ses-11 | task-mtt_we_dir-pa_run-01_we_time-space_event| -| sub-12 | ses-11 | dir-pa_run-01_we_time-space_event| -| sub-15 | ses-04 | dir-ap_run-05_sentence-word| -| sub-15 | ses-04 | task-rsvp_language_dir-ap_run-05_sentence-word| -| sub-13 | ses-11 | task-mtt_we_dir-pa_run-02_westside-eastside_event| -| sub-13 | ses-11 | dir-pa_run-02_westside-eastside_event| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_FrontalPole_Fp2.md b/deploy/datasets/supplements/data/ibc/left_FrontalPole_Fp2.md deleted file mode 100644 index 7ffb4dfee33535f218b4db2628cd0f816022dd3b..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_FrontalPole_Fp2.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area Fp2 (FPole) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area Fp2 (FPole) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-12 | ses-03 | task-archi_emotional_dir-pa_face_trusty-gender| -| sub-12 | ses-03 | dir-pa_face_trusty-gender| -| sub-06 | ses-03 | dir-pa_run-01_complex| -| sub-06 | ses-03 | task-rsvp_language_dir-pa_run-01_complex| -| sub-06 | ses-03 | task-rsvp_language_dir-pa_run-01_probe| -| sub-06 | ses-03 | dir-pa_run-01_probe| -| sub-07 | ses-03 | dir-pa_run-01_complex| -| sub-07 | ses-03 | task-rsvp_language_dir-pa_run-01_complex| -| sub-05 | ses-03 | dir-pa_run-01_sentence-word| -| sub-05 | ses-03 | task-rsvp_language_dir-pa_run-01_sentence-word| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Hippocampus_DG.md b/deploy/datasets/supplements/data/ibc/left_Hippocampus_DG.md deleted file mode 100644 index 6270c9d996537e79f672fc05a1cdb523697285db..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Hippocampus_DG.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in DG (Hippocampus) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in DG (Hippocampus) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-05 | ses-00 | task-archi_spatial_dir-pa_hand-side| -| sub-05 | ses-00 | dir-pa_hand-side| -| sub-07 | ses-23 | dir-pa_run-02_encode_self-other| -| sub-07 | ses-23 | task-self_dir-pa_run-02_encode_self-other| -| sub-07 | ses-12 | dir-pa_run-02_we_space-time_event| -| sub-07 | ses-12 | task-mtt_we_dir-pa_run-02_we_space-time_event| -| sub-15 | ses-20 | task-self_dir-pa_run-01_recognition_self-other| -| sub-15 | ses-20 | dir-pa_run-01_recognition_self-other| -| sub-11 | ses-11 | dir-ap_run-03_we_eastside_event| -| sub-11 | ses-11 | task-mtt_we_dir-ap_run-03_we_eastside_event| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Hippocampus_HATA.md b/deploy/datasets/supplements/data/ibc/left_Hippocampus_HATA.md deleted file mode 100644 index e1735bb7e412969ecce9ec11c44c34f7a7557214..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Hippocampus_HATA.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in HATA (Hippocampus) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in HATA (Hippocampus) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-05 | ses-20 | task-self_dir-pa_run-01_encode_self-other| -| sub-05 | ses-20 | dir-pa_run-01_encode_self-other| -| sub-05 | ses-03 | task-rsvp_language_dir-ap_run-05_jabberwocky-pseudo| -| sub-05 | ses-03 | dir-ap_run-05_jabberwocky-pseudo| -| sub-07 | ses-11 | dir-ap_run-03_southside-northside_event| -| sub-07 | ses-11 | task-mtt_sn_dir-ap_run-03_southside-northside_event| -| sub-05 | ses-00 | task-archi_standard_dir-pa_left-right_button_press| -| sub-05 | ses-00 | dir-pa_left-right_button_press| -| sub-06 | ses-12 | dir-ap_run-03_northside-southside_event| -| sub-06 | ses-12 | task-mtt_sn_dir-ap_run-03_northside-southside_event| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Hippocampus_Subc.md b/deploy/datasets/supplements/data/ibc/left_Hippocampus_Subc.md deleted file mode 100644 index 507443a12add523487d020e1fe511b3b62f96b4e..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Hippocampus_Subc.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Subiculum (Hippocampus) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Subiculum (Hippocampus) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-13 | ses-12 | task-mtt_sn_dir-pa_run-02_sn_time-space_event| -| sub-13 | ses-12 | dir-pa_run-02_sn_time-space_event| -| sub-15 | ses-15 | sn_all_time-space_cue| -| sub-13 | ses-17 | task-enumeration_dir-ap_enumeration_quadratic| -| sub-13 | ses-17 | dir-ap_enumeration_quadratic| -| sub-04 | ses-03 | task-rsvp_language_dir-pa_run-02_jabberwocky-pseudo| -| sub-04 | ses-03 | dir-pa_run-02_jabberwocky-pseudo| -| sub-09 | ses-16 | dir-pa_face_linear| -| sub-09 | ses-16 | task-preference_faces_dir-pa_face_linear| -| sub-06 | ses-12 | dir-ap_run-03_northside-southside_event| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_IPL_PF.md b/deploy/datasets/supplements/data/ibc/left_IPL_PF.md deleted file mode 100644 index ede3391788cec63a83ab3218c3021f8590991a0e..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_IPL_PF.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area PF (IPL) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area PF (IPL) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-01 | ses-07 | task-archi_social_ffx_mechanistic_audio| -| sub-01 | ses-07 | dir-ffx_mechanistic_audio| -| sub-01 | ses-07 | mechanistic_audio| -| sub-01 | ses-07 | dir-pa_false_belief_audio| -| sub-01 | ses-07 | task-archi_social_dir-pa_false_belief_audio| -| sub-01 | ses-07 | false_belief_audio| -| sub-01 | ses-07 | dir-ffx_false_belief_audio| -| sub-01 | ses-07 | task-archi_social_dir-ap_false_belief_audio| -| sub-01 | ses-07 | dir-ap_false_belief_audio| -| sub-01 | ses-07 | task-archi_social_ffx_false_belief_audio| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_IPL_PFcm.md b/deploy/datasets/supplements/data/ibc/left_IPL_PFcm.md deleted file mode 100644 index fc5515abfe1d3f29df92147045d3a7c305201165..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_IPL_PFcm.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area PFcm (IPL) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area PFcm (IPL) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-13 | ses-03 | task-rsvp_language_dir-pa_run-01_complex| -| sub-13 | ses-03 | dir-pa_run-01_complex| -| sub-05 | ses-20 | recognition_self_hit| -| sub-05 | ses-04 | dir-ffx_computation| -| sub-05 | ses-04 | computation| -| sub-05 | ses-04 | task-archi_standard_ffx_computation| -| sub-14 | ses-02 | task-hcp_motor_dir-ap_left_hand| -| sub-14 | ses-02 | dir-ap_left_hand| -| sub-14 | ses-02 | dir-ap_cue| -| sub-14 | ses-02 | task-hcp_motor_dir-ap_cue| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_IPL_PFm.md b/deploy/datasets/supplements/data/ibc/left_IPL_PFm.md deleted file mode 100644 index 8b74ded8ecb071d7a8d817cfd504ce508ef2928a..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_IPL_PFm.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area PFm (IPL) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area PFm (IPL) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-05 | ses-03 | dir-pa_run-00_sentence-pseudo| -| sub-05 | ses-03 | task-rsvp_language_dir-pa_run-00_sentence-pseudo| -| sub-11 | ses-12 | task-mtt_sn_dir-pa_run-01_sn_all_event_response| -| sub-11 | ses-12 | dir-pa_run-01_sn_all_event_response| -| sub-12 | ses-11 | dir-pa_run-02_westside-eastside_event| -| sub-12 | ses-11 | task-mtt_we_dir-pa_run-02_westside-eastside_event| -| sub-04 | ses-03 | dir-ap_run-03_complex-simple| -| sub-04 | ses-03 | task-rsvp_language_dir-ap_run-03_complex-simple| -| sub-01 | ses-18 | dir-ffx_movie_mental-pain| -| sub-01 | ses-18 | movie_mental-pain| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_IPL_PFop.md b/deploy/datasets/supplements/data/ibc/left_IPL_PFop.md deleted file mode 100644 index 95f9a9ae0b940f982afa20a5c052a0fe84e6d21d..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_IPL_PFop.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area PFop (IPL) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area PFop (IPL) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-15 | ses-01 | dir-pa_motor-cognitive| -| sub-15 | ses-01 | task-archi_standard_dir-pa_motor-cognitive| -| sub-14 | ses-17 | dir-pa_run-02_vstm_constant| -| sub-14 | ses-17 | task-vstm_dir-pa_run-02_vstm_constant| -| sub-13 | ses-03 | dir-ap_run-05_jabberwocky-consonant_string| -| sub-13 | ses-03 | task-rsvp_language_dir-ap_run-05_jabberwocky-consonant_string| -| sub-14 | ses-01 | task-archi_standard_dir-pa_motor-cognitive| -| sub-14 | ses-01 | dir-pa_motor-cognitive| -| sub-05 | ses-04 | dir-ffx_motor-cognitive| -| sub-05 | ses-04 | motor-cognitive| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_IPL_PFt.md b/deploy/datasets/supplements/data/ibc/left_IPL_PFt.md deleted file mode 100644 index eb3040dd56935ab27c00ee0c85712694da2debc9..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_IPL_PFt.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area PFt (IPL) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area PFt (IPL) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-15 | ses-01 | dir-ffx_motor-cognitive| -| sub-15 | ses-01 | task-archi_standard_ffx_motor-cognitive| -| sub-15 | ses-01 | motor-cognitive| -| sub-09 | ses-22 | task-self_dir-ap_run-03_recognition_hit-correct_rejection| -| sub-09 | ses-22 | dir-ap_run-03_recognition_hit-correct_rejection| -| sub-14 | ses-01 | dir-pa_expression_gender-control| -| sub-14 | ses-01 | task-archi_emotional_dir-pa_expression_gender-control| -| sub-15 | ses-10 | task-vstm_dir-ap_run-01_vstm_constant| -| sub-15 | ses-10 | dir-ap_run-01_vstm_constant| -| sub-04 | ses-04 | dir-pa_grasp-orientation| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_IPL_PGa.md b/deploy/datasets/supplements/data/ibc/left_IPL_PGa.md deleted file mode 100644 index 13398a3df75cda3e6d457a35f39d98449c054b85..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_IPL_PGa.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area PGa (IPL) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area PGa (IPL) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-00 | dir-pa_false_belief-mechanistic| -| sub-07 | ses-00 | task-archi_social_dir-pa_false_belief-mechanistic| -| sub-01 | ses-07 | task-archi_emotional_dir-pa_face_trusty-gender| -| sub-01 | ses-07 | dir-pa_face_trusty-gender| -| sub-11 | ses-11 | task-mtt_we_dir-ap_run-03_we_all_event_response| -| sub-11 | ses-11 | dir-ap_run-03_we_all_event_response| -| sub-05 | ses-16 | task-pain_movie_dir-pa_movie_mental| -| sub-05 | ses-16 | task-pain_movie_ffx_movie_mental| -| sub-05 | ses-16 | dir-pa_movie_mental| -| sub-05 | ses-16 | dir-ffx_movie_mental| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_IPL_PGp.md b/deploy/datasets/supplements/data/ibc/left_IPL_PGp.md deleted file mode 100644 index 5119fc4d94fc6f8da69d42692c37294ffd1dc316..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_IPL_PGp.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area PGp (IPL) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area PGp (IPL) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-02 | ses-06 | dir-ap_run-03_sentence-word| -| sub-02 | ses-06 | task-rsvp_language_dir-ap_run-03_sentence-word| -| sub-14 | ses-16 | task-emotional_pain_dir-pa_emotional-physical_pain| -| sub-14 | ses-16 | dir-pa_emotional-physical_pain| -| sub-09 | ses-05 | dir-ap_reading-checkerboard| -| sub-09 | ses-05 | task-archi_standard_dir-ap_reading-checkerboard| -| sub-14 | ses-16 | emotional-physical_pain| -| sub-14 | ses-16 | task-emotional_pain_ffx_emotional-physical_pain| -| sub-14 | ses-16 | dir-ffx_emotional-physical_pain| -| sub-08 | ses-01 | task-archi_standard_dir-pa_reading-checkerboard| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Insula_Id1.md b/deploy/datasets/supplements/data/ibc/left_Insula_Id1.md deleted file mode 100644 index 16516c0c70a588d67b64812bb820aa1025fa4163..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Insula_Id1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area Id1 (Insula) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area Id1 (Insula) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-01 | ses-07 | task-archi_social_dir-pa_speech_sound| -| sub-01 | ses-07 | dir-pa_speech_sound| -| sub-06 | ses-03 | task-rsvp_language_dir-ap_run-03_word-pseudo| -| sub-06 | ses-03 | dir-ap_run-03_word-pseudo| -| sub-09 | ses-13 | dir-ap_run-03_sn_all_time-space_cue| -| sub-09 | ses-13 | task-mtt_sn_dir-ap_run-03_sn_all_time-space_cue| -| sub-14 | ses-11 | task-mtt_we_dir-pa_run-01_we_after-before_event| -| sub-14 | ses-11 | dir-pa_run-01_we_after-before_event| -| sub-05 | ses-04 | task-archi_emotional_dir-ap_face_trusty-gender| -| sub-05 | ses-04 | dir-ap_face_trusty-gender| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Insula_Id7.md b/deploy/datasets/supplements/data/ibc/left_Insula_Id7.md deleted file mode 100644 index 7f967dfb0c81816ba254583996dbcf4967417031..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Insula_Id7.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area Id7 (Insula) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area Id7 (Insula) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-14 | ses-13 | dir-ffx_painting_linear| -| sub-14 | ses-13 | task-preference_paintings_ffx_painting_linear| -| sub-14 | ses-13 | painting_linear| -| sub-09 | ses-18 | task-enumeration_ffx_enumeration_linear| -| sub-09 | ses-18 | enumeration_linear| -| sub-09 | ses-18 | dir-ffx_enumeration_linear| -| sub-04 | ses-03 | dir-ap_run-05_word-pseudo| -| sub-04 | ses-03 | task-rsvp_language_dir-ap_run-05_word-pseudo| -| sub-09 | ses-05 | dir-ap_mechanistic_audio| -| sub-09 | ses-05 | task-archi_social_dir-ap_mechanistic_audio| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Insula_Ig1.md b/deploy/datasets/supplements/data/ibc/left_Insula_Ig1.md deleted file mode 100644 index b31b7be89c645f9007165647bf82cefeac575e78..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Insula_Ig1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area Ig1 (Insula) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area Ig1 (Insula) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-11 | task-mtt_sn_dir-pa_run-01_sn_after-before_event| -| sub-07 | ses-11 | dir-pa_run-01_sn_after-before_event| -| sub-02 | ses-04 | task-hcp_gambling_dir-ap_punishment-reward| -| sub-02 | ses-04 | dir-ap_punishment-reward| -| sub-07 | ses-11 | task-mtt_sn_dir-pa_run-01_sn_all_time-space_cue| -| sub-07 | ses-11 | dir-pa_run-01_sn_all_time-space_cue| -| sub-01 | ses-07 | task-archi_social_dir-ap_triangle_random| -| sub-01 | ses-07 | dir-ap_triangle_random| -| sub-11 | ses-12 | dir-pa_run-02_sn_all_event_response| -| sub-11 | ses-12 | task-mtt_sn_dir-pa_run-02_sn_all_event_response| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Insula_Ig2.md b/deploy/datasets/supplements/data/ibc/left_Insula_Ig2.md deleted file mode 100644 index 40e2e14833b77ad63173208664e2aead7a3a23c5..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Insula_Ig2.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area Ig2 (Insula) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area Ig2 (Insula) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-09 | ses-04 | dir-pa_run-02_word-consonant_string| -| sub-09 | ses-04 | task-rsvp_language_dir-pa_run-02_word-consonant_string| -| sub-11 | ses-12 | dir-pa_run-02_sn_all_event_response| -| sub-11 | ses-12 | task-mtt_sn_dir-pa_run-02_sn_all_event_response| -| sub-15 | ses-15 | task-mtt_sn_dir-ap_run-03_sn_all_space-time_cue| -| sub-15 | ses-15 | dir-ap_run-03_sn_all_space-time_cue| -| sub-12 | ses-12 | dir-pa_run-01_southside-northside_event| -| sub-12 | ses-12 | task-mtt_sn_dir-pa_run-01_southside-northside_event| -| sub-01 | ses-05 | task-rsvp_language_dir-pa_run-01_jabberwocky-pseudo| -| sub-01 | ses-05 | dir-pa_run-01_jabberwocky-pseudo| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Motor_4a.md b/deploy/datasets/supplements/data/ibc/left_Motor_4a.md deleted file mode 100644 index 3bd5d7b5260b0e5968cc23a756bcdee00cce30d7..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Motor_4a.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 4a (PreCG) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 4a (PreCG) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-09 | ses-05 | task-archi_standard_dir-pa_right-left_button_press| -| sub-09 | ses-05 | dir-pa_right-left_button_press| -| sub-09 | ses-05 | task-archi_standard_ffx_right-left_button_press| -| sub-09 | ses-05 | dir-ffx_right-left_button_press| -| sub-09 | ses-05 | right-left_button_press| -| sub-12 | ses-00 | right-left_button_press| -| sub-12 | ses-00 | task-archi_standard_ffx_right-left_button_press| -| sub-12 | ses-00 | dir-ffx_right-left_button_press| -| sub-11 | ses-00 | dir-pa_object_grasp| -| sub-11 | ses-00 | task-archi_spatial_dir-pa_object_grasp| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Motor_4p.md b/deploy/datasets/supplements/data/ibc/left_Motor_4p.md deleted file mode 100644 index dfaac8beb39aa9c2dc89a98cd76862c90e3f8e2d..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Motor_4p.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 4p (PreCG) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 4p (PreCG) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-14 | ses-00 | dir-pa_right-left_button_press| -| sub-14 | ses-00 | task-archi_standard_dir-pa_right-left_button_press| -| sub-14 | ses-00 | task-archi_standard_dir-pa_video_right_button_press| -| sub-14 | ses-00 | dir-pa_video_right_button_press| -| sub-11 | ses-05 | dir-ap_right-left_button_press| -| sub-11 | ses-05 | task-archi_standard_dir-ap_right-left_button_press| -| sub-14 | ses-02 | task-hcp_motor_dir-ap_right_hand-avg| -| sub-14 | ses-02 | dir-ap_right_hand-avg| -| sub-14 | ses-02 | dir-ffx_right_hand| -| sub-14 | ses-02 | task-hcp_motor_dir-ap_right_hand| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_OFC_Fo1.md b/deploy/datasets/supplements/data/ibc/left_OFC_Fo1.md deleted file mode 100644 index 64a6cc2da826d8224e4e7e5ed4d9c9fa2bb4c078..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_OFC_Fo1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area Fo1 (OFC) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area Fo1 (OFC) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-12 | ses-01 | task-hcp_gambling_ffx_reward-punishment| -| sub-12 | ses-01 | reward-punishment| -| sub-12 | ses-01 | dir-ffx_reward-punishment| -| sub-12 | ses-01 | dir-ap_reward-punishment| -| sub-12 | ses-01 | task-hcp_gambling_dir-ap_reward-punishment| -| sub-07 | ses-15 | task-preference_paintings_ffx_painting_quadratic| -| sub-07 | ses-15 | dir-ffx_painting_quadratic| -| sub-07 | ses-15 | painting_quadratic| -| sub-07 | ses-12 | task-mtt_we_dir-pa_run-02_we_before-after_event| -| sub-07 | ses-12 | dir-pa_run-02_we_before-after_event| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_OFC_Fo2.md b/deploy/datasets/supplements/data/ibc/left_OFC_Fo2.md deleted file mode 100644 index fcb59227471d0abc5dba5ed4ade8859e076df845..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_OFC_Fo2.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area Fo2 (OFC) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area Fo2 (OFC) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-04 | ses-03 | task-rsvp_language_dir-ap_run-04_jabberwocky-pseudo| -| sub-04 | ses-03 | dir-ap_run-04_jabberwocky-pseudo| -| sub-11 | ses-11 | task-mtt_we_dir-pa_run-01_we_before-after_event| -| sub-11 | ses-11 | dir-pa_run-01_we_before-after_event| -| sub-13 | ses-15 | dir-pa_painting_linear| -| sub-13 | ses-15 | task-preference_paintings_dir-pa_painting_linear| -| sub-15 | ses-15 | sn_all_space-time_cue| -| sub-11 | ses-12 | dir-pa_run-01_southside-northside_event| -| sub-11 | ses-12 | task-mtt_sn_dir-pa_run-01_southside-northside_event| -| sub-07 | ses-03 | task-rsvp_language_dir-pa_run-02_jabberwocky-pseudo| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_OFC_Fo3.md b/deploy/datasets/supplements/data/ibc/left_OFC_Fo3.md deleted file mode 100644 index 9bb5897ee639c746408c55011f2c6de91e10b3b0..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_OFC_Fo3.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area Fo3 (OFC) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area Fo3 (OFC) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-04 | ses-15 | task-preference_houses_dir-ap_house_quadratic| -| sub-04 | ses-15 | dir-ffx_house_quadratic| -| sub-04 | ses-15 | house_quadratic| -| sub-04 | ses-15 | task-preference_houses_ffx_house_quadratic| -| sub-04 | ses-15 | dir-ap_house_quadratic| -| sub-11 | ses-05 | dir-ap_face_trusty-control| -| sub-11 | ses-05 | task-archi_emotional_dir-ap_face_trusty-control| -| sub-12 | ses-00 | dir-ap_audio_left_button_press| -| sub-12 | ses-00 | task-archi_standard_dir-ap_audio_left_button_press| -| sub-07 | ses-03 | task-rsvp_language_dir-pa_run-01_sentence-jabberwocky| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Operculum_OP1.md b/deploy/datasets/supplements/data/ibc/left_Operculum_OP1.md deleted file mode 100644 index 147f29db3ad4cd63ecdac9c5eb4cfdc4888d6b72..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Operculum_OP1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area OP1 (POperc) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area OP1 (POperc) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-05 | ses-04 | dir-ffx_motor-cognitive| -| sub-05 | ses-04 | motor-cognitive| -| sub-05 | ses-04 | task-archi_standard_ffx_motor-cognitive| -| sub-04 | ses-03 | dir-pa_run-00_probe| -| sub-04 | ses-03 | task-rsvp_language_dir-pa_run-00_probe| -| sub-04 | ses-11 | task-mtt_we_dir-ap_run-03_we_all_space-time_cue| -| sub-04 | ses-11 | dir-ap_run-03_we_all_space-time_cue| -| sub-05 | ses-02 | dir-pa_0back_place| -| sub-05 | ses-02 | task-hcp_wm_dir-pa_0back_place| -| sub-14 | ses-04 | task-rsvp_language_dir-pa_run-00_probe| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Operculum_OP2.md b/deploy/datasets/supplements/data/ibc/left_Operculum_OP2.md deleted file mode 100644 index 782b4f567a601645b886124b454e79be554070a2..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Operculum_OP2.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area OP2 (POperc) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area OP2 (POperc) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-11 | task-mtt_sn_dir-pa_run-01_sn_all_time-space_cue| -| sub-07 | ses-11 | dir-pa_run-01_sn_all_time-space_cue| -| sub-09 | ses-01 | task-hcp_gambling_dir-pa_punishment-reward| -| sub-09 | ses-01 | dir-pa_punishment-reward| -| sub-07 | ses-11 | task-mtt_sn_dir-pa_run-01_sn_after-before_event| -| sub-07 | ses-11 | dir-pa_run-01_sn_after-before_event| -| sub-09 | ses-04 | dir-pa_run-02_word-consonant_string| -| sub-09 | ses-04 | task-rsvp_language_dir-pa_run-02_word-consonant_string| -| sub-08 | ses-11 | task-mtt_we_dir-pa_run-02_we_after-before_event| -| sub-08 | ses-11 | dir-pa_run-02_we_after-before_event| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Operculum_OP3.md b/deploy/datasets/supplements/data/ibc/left_Operculum_OP3.md deleted file mode 100644 index 8482bca463a3b3c6ece71fc970d230fe20f11d71..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Operculum_OP3.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area OP3 (POperc) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area OP3 (POperc) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-04 | ses-17 | dir-pa_run-01_vstm_linear| -| sub-04 | ses-17 | task-vstm_dir-pa_run-01_vstm_linear| -| sub-07 | ses-15 | dir-ffx_face_quadratic| -| sub-07 | ses-15 | task-preference_faces_ffx_face_quadratic| -| sub-07 | ses-15 | face_quadratic| -| sub-12 | ses-00 | dir-pa_right-left_button_press| -| sub-12 | ses-00 | task-archi_standard_dir-pa_right-left_button_press| -| sub-07 | ses-23 | task-self_dir-pa_run-01_recognition_self-other| -| sub-07 | ses-23 | dir-pa_run-01_recognition_self-other| -| sub-11 | ses-18 | task-emotional_pain_dir-pa_emotional-physical_pain| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Operculum_OP4.md b/deploy/datasets/supplements/data/ibc/left_Operculum_OP4.md deleted file mode 100644 index d59cd3ae0ff0a291780dc919f06549e81175ca8d..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Operculum_OP4.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area OP4 (POperc) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area OP4 (POperc) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-08 | ses-01 | dir-ap_motor-cognitive| -| sub-08 | ses-01 | task-archi_standard_dir-ap_motor-cognitive| -| sub-02 | ses-04 | dir-pa_tongue| -| sub-02 | ses-04 | task-hcp_motor_dir-pa_tongue| -| sub-04 | ses-16 | task-theory_of_mind_dir-pa_belief| -| sub-04 | ses-16 | dir-pa_belief| -| sub-06 | ses-01 | task-hcp_motor_dir-pa_tongue| -| sub-06 | ses-01 | dir-pa_tongue| -| sub-02 | ses-01 | dir-pa_listening-reading| -| sub-02 | ses-01 | task-archi_standard_dir-pa_listening-reading| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_PIPS_hIP4.md b/deploy/datasets/supplements/data/ibc/left_PIPS_hIP4.md deleted file mode 100644 index 6fd97460be378deddd208bcdbfbee21d93b13d23..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_PIPS_hIP4.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hIP4 (IPS) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hIP4 (IPS) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-12 | ses-02 | task-hcp_wm_dir-ap_place-avg| -| sub-12 | ses-02 | dir-ap_place-avg| -| sub-12 | ses-02 | dir-ffx_place-avg| -| sub-12 | ses-02 | place-avg| -| sub-12 | ses-02 | task-hcp_wm_ffx_place-avg| -| sub-09 | ses-16 | task-preference_paintings_dir-ap_painting_constant| -| sub-09 | ses-16 | dir-ap_painting_constant| -| sub-13 | ses-03 | dir-ap_run-05_word-pseudo| -| sub-13 | ses-03 | task-rsvp_language_dir-ap_run-05_word-pseudo| -| sub-02 | ses-01 | object_orientation| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_PIPS_hIP5.md b/deploy/datasets/supplements/data/ibc/left_PIPS_hIP5.md deleted file mode 100644 index 05003636feb30d879ad5cee10f9ab5457802a726..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_PIPS_hIP5.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hIP5 (IPS) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hIP5 (IPS) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-02 | ses-00 | dir-pa_cognitive-motor| -| sub-02 | ses-00 | task-archi_standard_dir-pa_cognitive-motor| -| sub-09 | ses-05 | task-archi_emotional_dir-ap_expression_intention-gender| -| sub-09 | ses-05 | dir-ap_expression_intention-gender| -| sub-01 | ses-00 | task-archi_standard_ffx_computation-sentences| -| sub-01 | ses-00 | computation-sentences| -| sub-01 | ses-00 | dir-ffx_computation-sentences| -| sub-12 | ses-12 | dir-pa_run-01_northside-southside_event| -| sub-12 | ses-12 | task-mtt_sn_dir-pa_run-01_northside-southside_event| -| sub-09 | ses-01 | dir-pa_shape-face| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_PIPS_hIP6.md b/deploy/datasets/supplements/data/ibc/left_PIPS_hIP6.md deleted file mode 100644 index 2d10f493b0dab0e785b6b85dd42da97b476ec18c..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_PIPS_hIP6.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hIP6 (IPS) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hIP6 (IPS) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-02 | ses-01 | computation| -| sub-02 | ses-01 | task-archi_standard_ffx_computation| -| sub-02 | ses-01 | dir-ffx_computation| -| sub-08 | ses-01 | dir-ap_cognitive-motor| -| sub-08 | ses-01 | task-archi_standard_dir-ap_cognitive-motor| -| sub-09 | ses-12 | we_all_space-time_cue| -| sub-15 | ses-02 | task-hcp_language_dir-ap_math-story| -| sub-15 | ses-02 | dir-ap_math-story| -| sub-04 | ses-00 | task-archi_standard_dir-pa_computation| -| sub-04 | ses-00 | dir-pa_computation| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_PIPS_hIP7.md b/deploy/datasets/supplements/data/ibc/left_PIPS_hIP7.md deleted file mode 100644 index ff47afbb23e6a46d9d957f30aa76649668edf9f7..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_PIPS_hIP7.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hIP7 (IPS) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hIP7 (IPS) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-15 | task-preference_food_ffx_food_linear| -| sub-07 | ses-15 | dir-ffx_food_linear| -| sub-07 | ses-15 | food_linear| -| sub-07 | ses-00 | task-archi_social_dir-ap_false_belief_audio| -| sub-07 | ses-00 | dir-ap_false_belief_audio| -| sub-14 | ses-16 | dir-ap_emotional_pain| -| sub-14 | ses-16 | task-emotional_pain_dir-ap_emotional_pain| -| sub-14 | ses-16 | task-emotional_pain_ffx_emotional_pain| -| sub-14 | ses-16 | dir-ffx_emotional_pain| -| sub-14 | ses-16 | emotional_pain| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_PIPS_hIP8.md b/deploy/datasets/supplements/data/ibc/left_PIPS_hIP8.md deleted file mode 100644 index 9f532743df439bbba7f595a0c88e8b2b28881357..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_PIPS_hIP8.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hIP8 (IPS) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hIP8 (IPS) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-12 | ses-04 | consonant_string| -| sub-06 | ses-00 | dir-pa_grasp-orientation| -| sub-06 | ses-00 | task-archi_spatial_dir-pa_grasp-orientation| -| sub-06 | ses-00 | task-archi_spatial_ffx_grasp-orientation| -| sub-06 | ses-00 | dir-ffx_grasp-orientation| -| sub-06 | ses-00 | grasp-orientation| -| sub-01 | ses-07 | task-archi_spatial_dir-ap_hand-side| -| sub-01 | ses-07 | dir-ap_hand-side| -| sub-04 | ses-15 | task-preference_houses_ffx_house_linear| -| sub-04 | ses-15 | dir-ffx_house_linear| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_PIPS_hPO1.md b/deploy/datasets/supplements/data/ibc/left_PIPS_hPO1.md deleted file mode 100644 index 800034d62671414bb8138df90ca983fa4b6f8691..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_PIPS_hPO1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hPO1 (POS) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hPO1 (POS) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-04 | ses-17 | task-vstm_dir-pa_run-02_vstm_linear| -| sub-04 | ses-17 | dir-pa_run-02_vstm_linear| -| sub-07 | ses-00 | dir-pa_cognitive-motor| -| sub-07 | ses-00 | task-archi_standard_dir-pa_cognitive-motor| -| sub-12 | ses-16 | task-preference_food_dir-ap_food_constant| -| sub-12 | ses-16 | dir-ap_food_constant| -| sub-12 | ses-16 | dir-ap_house_constant| -| sub-12 | ses-16 | task-preference_houses_dir-ap_house_constant| -| sub-15 | ses-03 | dir-ap_0back-2back| -| sub-15 | ses-03 | task-hcp_wm_dir-ap_0back-2back| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_PSC_1.md b/deploy/datasets/supplements/data/ibc/left_PSC_1.md deleted file mode 100644 index 4f8f2e4cccc6c6f9761d1ac3ed795b00552eedc6..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_PSC_1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 1 (PostCG) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 1 (PostCG) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-01 | ses-00 | dir-ffx_right-left_button_press| -| sub-01 | ses-00 | dir-ap_right-left_button_press| -| sub-01 | ses-00 | task-archi_standard_dir-ap_right-left_button_press| -| sub-01 | ses-00 | right-left_button_press| -| sub-01 | ses-00 | task-archi_standard_ffx_right-left_button_press| -| sub-05 | ses-11 | task-mtt_we_dir-ap_run-03_eastside-westside_event| -| sub-02 | ses-00 | dir-ap_right-left_button_press| -| sub-02 | ses-00 | task-archi_standard_ffx_right-left_button_press| -| sub-15 | ses-14 | we_after-before_event| -| sub-15 | ses-14 | task-mtt_we_dir-pa_run-02_we_after-before_event| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_PSC_2.md b/deploy/datasets/supplements/data/ibc/left_PSC_2.md deleted file mode 100644 index 417ee14f2f79215acaf579d990eda28daaf06116..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_PSC_2.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 2 (PostCS) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 2 (PostCS) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-12 | ses-16 | task-preference_food_dir-ap_food_linear| -| sub-12 | ses-16 | dir-ap_food_linear| -| sub-09 | ses-13 | sn_all_time-space_cue| -| sub-05 | ses-02 | 2back-0back| -| sub-05 | ses-02 | dir-ffx_2back-0back| -| sub-05 | ses-02 | task-hcp_wm_ffx_2back-0back| -| sub-09 | ses-05 | dir-pa_grasp-orientation| -| sub-09 | ses-05 | task-archi_spatial_dir-pa_grasp-orientation| -| sub-07 | ses-00 | dir-ffx_motor-cognitive| -| sub-07 | ses-00 | motor-cognitive| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_PSC_3a.md b/deploy/datasets/supplements/data/ibc/left_PSC_3a.md deleted file mode 100644 index 63fa432d846f461a534bc923a06acfaf396512e4..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_PSC_3a.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 3a (PostCG) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 3a (PostCG) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-09 | ses-12 | task-mtt_we_dir-pa_run-02_we_after-before_event| -| sub-09 | ses-12 | dir-pa_run-02_we_after-before_event| -| sub-14 | ses-00 | dir-ap_grasp-orientation| -| sub-14 | ses-00 | task-archi_spatial_dir-ap_grasp-orientation| -| sub-11 | ses-22 | dir-ap_run-04_correct_rejection| -| sub-11 | ses-22 | task-self_dir-ap_run-04_correct_rejection| -| sub-14 | ses-02 | dir-pa_right_foot-avg| -| sub-14 | ses-02 | task-hcp_motor_dir-pa_right_foot-avg| -| sub-05 | ses-20 | task-self_dir-ap_run-03_instructions| -| sub-05 | ses-20 | dir-ap_run-03_instructions| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_PSC_3b.md b/deploy/datasets/supplements/data/ibc/left_PSC_3b.md deleted file mode 100644 index 1f12367055cad9e5e8c737c928b7c8e659095662..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_PSC_3b.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 3b (PostCG) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 3b (PostCG) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-13 | ses-01 | dir-ap_tongue| -| sub-13 | ses-01 | task-hcp_motor_dir-ap_tongue| -| sub-09 | ses-01 | task-hcp_emotion_dir-pa_shape| -| sub-09 | ses-01 | dir-pa_shape| -| sub-06 | ses-00 | task-archi_standard_dir-ap_video_left_button_press| -| sub-06 | ses-00 | dir-ap_video_left_button_press| -| sub-02 | ses-01 | dir-ffx_motor-cognitive| -| sub-02 | ses-01 | task-archi_standard_ffx_motor-cognitive| -| sub-02 | ses-01 | motor-cognitive| -| sub-13 | ses-12 | sn_space-time_event| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Premotor_6d1.md b/deploy/datasets/supplements/data/ibc/left_Premotor_6d1.md deleted file mode 100644 index ae0f157a6ad8cda594a2a00db2de287baa863110..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Premotor_6d1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 6d1 (PreCG) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 6d1 (PreCG) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-12 | ses-00 | dir-ap_object_grasp| -| sub-12 | ses-00 | task-archi_spatial_dir-ap_object_orientation| -| sub-12 | ses-00 | task-archi_spatial_dir-ap_object_grasp| -| sub-12 | ses-00 | dir-ap_object_orientation| -| sub-06 | ses-01 | task-hcp_motor_ffx_right_foot| -| sub-06 | ses-01 | dir-ffx_right_foot| -| sub-06 | ses-01 | right_foot| -| sub-15 | ses-00 | dir-pa_object_orientation| -| sub-15 | ses-00 | task-archi_spatial_dir-pa_object_orientation| -| sub-12 | ses-12 | dir-pa_run-02_sn_after-before_event| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Premotor_6d2.md b/deploy/datasets/supplements/data/ibc/left_Premotor_6d2.md deleted file mode 100644 index 9b758368dd19831cf3ae92f3564df22031ee4e11..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Premotor_6d2.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 6d2 (PreCG) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 6d2 (PreCG) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-12 | ses-04 | task-rsvp_language_dir-pa_run-00_probe| -| sub-12 | ses-04 | dir-pa_run-00_probe| -| sub-12 | ses-04 | task-rsvp_language_dir-ap_run-05_probe| -| sub-12 | ses-04 | dir-ap_run-05_probe| -| sub-12 | ses-04 | dir-pa_run-02_probe| -| sub-12 | ses-04 | task-rsvp_language_dir-pa_run-02_probe| -| sub-08 | ses-00 | dir-pa_hand-side| -| sub-08 | ses-00 | task-archi_spatial_dir-pa_hand-side| -| sub-12 | ses-00 | task-archi_spatial_ffx_object_orientation| -| sub-12 | ses-00 | object_orientation| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Premotor_6d3.md b/deploy/datasets/supplements/data/ibc/left_Premotor_6d3.md deleted file mode 100644 index ae629ea599f1064df3986439798c84aa03bb0a4e..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Premotor_6d3.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 6d3 (SFS) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 6d3 (SFS) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-15 | ses-00 | task-archi_spatial_dir-pa_hand-side| -| sub-15 | ses-00 | dir-pa_hand-side| -| sub-05 | ses-04 | task-archi_spatial_dir-ap_hand-side| -| sub-05 | ses-04 | dir-ap_hand-side| -| sub-05 | ses-20 | task-self_dir-ap_run-04_encode_self-other| -| sub-05 | ses-20 | dir-ap_run-04_encode_self-other| -| sub-05 | ses-04 | computation-sentences| -| sub-05 | ses-04 | dir-ffx_computation-sentences| -| sub-05 | ses-04 | task-archi_standard_ffx_computation-sentences| -| sub-05 | ses-04 | task-archi_standard_dir-ap_computation-sentences| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_SPL_5Ci.md b/deploy/datasets/supplements/data/ibc/left_SPL_5Ci.md deleted file mode 100644 index 12c1dc2fd3c6ecac7cb81b8b9f6dd789a26fce18..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_SPL_5Ci.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 5Ci (SPL) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 5Ci (SPL) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-11 | ses-11 | task-mtt_we_dir-pa_run-02_westside-eastside_event| -| sub-11 | ses-11 | dir-pa_run-02_westside-eastside_event| -| sub-14 | ses-04 | dir-pa_run-02_complex-simple| -| sub-14 | ses-04 | task-rsvp_language_dir-pa_run-02_complex-simple| -| sub-01 | ses-15 | dir-pa_run-01_sn_all_time-space_cue| -| sub-01 | ses-15 | task-mtt_sn_dir-pa_run-01_sn_all_time-space_cue| -| sub-12 | ses-03 | task-archi_emotional_dir-ap_expression_gender-control| -| sub-12 | ses-03 | dir-ap_expression_gender-control| -| sub-08 | ses-02 | dir-pa_punishment-reward| -| sub-08 | ses-02 | task-hcp_gambling_dir-pa_punishment-reward| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_SPL_5L.md b/deploy/datasets/supplements/data/ibc/left_SPL_5L.md deleted file mode 100644 index a99abcbc86b3a2976f0f13caf7c22e3972abc71b..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_SPL_5L.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 5L (SPL) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 5L (SPL) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-05 | ses-00 | task-archi_standard_ffx_motor-cognitive| -| sub-05 | ses-00 | task-archi_standard_dir-pa_motor-cognitive| -| sub-05 | ses-00 | motor-cognitive| -| sub-05 | ses-00 | dir-ffx_motor-cognitive| -| sub-05 | ses-00 | dir-pa_motor-cognitive| -| sub-12 | ses-11 | we_space-time_event| -| sub-06 | ses-17 | task-vstm_dir-pa_run-02_vstm_linear| -| sub-06 | ses-17 | dir-pa_run-02_vstm_linear| -| sub-02 | ses-06 | dir-ap_run-05_probe| -| sub-02 | ses-06 | task-rsvp_language_dir-ap_run-05_probe| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_SPL_5M.md b/deploy/datasets/supplements/data/ibc/left_SPL_5M.md deleted file mode 100644 index 0407df916abade80b85aeb154cb7c518ecc59395..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_SPL_5M.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 5M (SPL) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 5M (SPL) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-14 | ses-11 | dir-ap_run-03_we_all_space_cue| -| sub-14 | ses-11 | task-mtt_we_dir-ap_run-03_we_all_space_cue| -| sub-05 | ses-20 | task-self_dir-pa_run-02_recognition_other_hit| -| sub-05 | ses-20 | dir-pa_run-02_recognition_other_hit| -| sub-07 | ses-23 | dir-ap_run-03_encode_self-other| -| sub-07 | ses-23 | task-self_dir-ap_run-03_encode_self-other| -| sub-04 | ses-01 | dir-pa_right_foot-avg| -| sub-04 | ses-01 | task-hcp_motor_dir-pa_right_foot-avg| -| sub-08 | ses-02 | dir-pa_punishment-reward| -| sub-08 | ses-02 | task-hcp_gambling_dir-pa_punishment-reward| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_SPL_7A.md b/deploy/datasets/supplements/data/ibc/left_SPL_7A.md deleted file mode 100644 index 2477b6490da9b45d47083cf3db0a0973b707a94a..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_SPL_7A.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 7A (SPL) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 7A (SPL) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-15 | ses-06 | task-preference_faces_dir-ap_face_linear| -| sub-15 | ses-06 | dir-ap_face_linear| -| sub-06 | ses-17 | task-vstm_dir-ap_run-01_vstm_constant| -| sub-06 | ses-17 | dir-ap_run-02_vstm_constant| -| sub-06 | ses-17 | vstm_constant| -| sub-06 | ses-17 | dir-ap_run-01_vstm_constant| -| sub-06 | ses-17 | task-vstm_dir-ap_run-02_vstm_constant| -| sub-11 | ses-12 | sn_space-time_event| -| sub-11 | ses-12 | task-mtt_sn_dir-pa_run-02_sn_space-time_event| -| sub-11 | ses-12 | dir-pa_run-02_sn_space-time_event| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_SPL_7M.md b/deploy/datasets/supplements/data/ibc/left_SPL_7M.md deleted file mode 100644 index a83a2ff29e9c472640efbb548834002673bd434f..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_SPL_7M.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 7M (SPL) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 7M (SPL) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-04 | ses-16 | task-emotional_pain_dir-ap_emotional-physical_pain| -| sub-04 | ses-16 | dir-ap_emotional-physical_pain| -| sub-12 | ses-16 | task-preference_faces_dir-ap_face_linear| -| sub-12 | ses-16 | dir-ap_face_linear| -| sub-04 | ses-15 | task-preference_food_ffx_food_quadratic| -| sub-04 | ses-15 | food_quadratic| -| sub-04 | ses-15 | dir-ffx_food_quadratic| -| sub-04 | ses-15 | task-preference_faces_dir-pa_face_quadratic| -| sub-04 | ses-15 | dir-pa_face_quadratic| -| sub-06 | ses-01 | punishment-reward| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_SPL_7P.md b/deploy/datasets/supplements/data/ibc/left_SPL_7P.md deleted file mode 100644 index 634eb9c46deef1523cbb292ead77dee75bf236c2..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_SPL_7P.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 7P (SPL) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 7P (SPL) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-12 | ses-16 | task-preference_faces_dir-pa_face_linear| -| sub-12 | ses-16 | dir-pa_face_linear| -| sub-06 | ses-00 | task-archi_standard_dir-pa_computation-sentences| -| sub-06 | ses-00 | dir-ffx_computation-sentences| -| sub-06 | ses-00 | task-archi_standard_ffx_computation-sentences| -| sub-06 | ses-00 | computation-sentences| -| sub-06 | ses-00 | dir-pa_computation-sentences| -| sub-12 | ses-16 | face_linear| -| sub-12 | ses-16 | dir-ffx_face_linear| -| sub-12 | ses-16 | task-preference_faces_ffx_face_linear| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_SPL_7PC.md b/deploy/datasets/supplements/data/ibc/left_SPL_7PC.md deleted file mode 100644 index 57a068e88f2ce94a0795edc596415857f1043c00..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_SPL_7PC.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 7PC (SPL) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 7PC (SPL) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-04 | ses-17 | task-vstm_dir-pa_run-01_vstm_constant| -| sub-04 | ses-17 | dir-pa_run-01_vstm_constant| -| sub-04 | ses-15 | dir-pa_face_constant| -| sub-04 | ses-15 | task-preference_faces_dir-pa_face_constant| -| sub-04 | ses-17 | task-vstm_dir-ap_run-01_vstm_constant| -| sub-04 | ses-17 | dir-ap_run-01_vstm_constant| -| sub-14 | ses-12 | sn_space-time_event| -| sub-07 | ses-11 | dir-pa_run-01_sn_all_event_response| -| sub-07 | ses-11 | task-mtt_sn_dir-pa_run-01_sn_all_event_response| -| sub-07 | ses-11 | sn_all_event_response| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Supplementarymotor_presma.md b/deploy/datasets/supplements/data/ibc/left_Supplementarymotor_presma.md deleted file mode 100644 index 9b450e4f4e2e21e2cae19018876ed85210a16668..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Supplementarymotor_presma.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 6ma (preSMA, mesial SFG) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 6ma (preSMA, mesial SFG) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-23 | dir-pa_run-01_correct_rejection| -| sub-07 | ses-23 | task-self_dir-pa_run-01_correct_rejection| -| sub-04 | ses-15 | dir-ap_painting_quadratic| -| sub-04 | ses-15 | task-preference_paintings_dir-ap_painting_quadratic| -| sub-15 | ses-00 | dir-pa_computation| -| sub-15 | ses-00 | task-archi_standard_dir-pa_computation| -| sub-11 | ses-18 | dir-ap_emotional-physical_pain| -| sub-11 | ses-18 | task-emotional_pain_dir-ap_emotional-physical_pain| -| sub-15 | ses-10 | dir-ap_enumeration_linear| -| sub-15 | ses-10 | task-enumeration_dir-ap_enumeration_linear| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Supplementarymotor_sma.md b/deploy/datasets/supplements/data/ibc/left_Supplementarymotor_sma.md deleted file mode 100644 index 8d6a080200b3eae2efb4d4f81e6db901d0b1960c..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Supplementarymotor_sma.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 6mp (SMA, mesial SFG) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 6mp (SMA, mesial SFG) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-09 | ses-12 | task-mtt_we_dir-ap_run-03_eastside-westside_event| -| sub-09 | ses-12 | dir-ap_run-03_eastside-westside_event| -| sub-15 | ses-06 | painting_linear| -| sub-15 | ses-06 | task-preference_paintings_ffx_painting_linear| -| sub-15 | ses-06 | dir-ffx_painting_linear| -| sub-06 | ses-16 | task-emotional_pain_dir-pa_emotional-physical_pain| -| sub-06 | ses-16 | dir-pa_emotional-physical_pain| -| sub-11 | ses-19 | enumeration_constant| -| sub-11 | ses-19 | task-enumeration_ffx_enumeration_constant| -| sub-11 | ses-19 | dir-pa_enumeration_constant| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Visual_FG1.md b/deploy/datasets/supplements/data/ibc/left_Visual_FG1.md deleted file mode 100644 index e2b028be6718e428927876ef4fe76856e511843c..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Visual_FG1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area FG1 (FusG) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area FG1 (FusG) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-06 | ses-04 | expression_intention| -| sub-06 | ses-04 | dir-ap_face_trusty| -| sub-06 | ses-04 | face_gender| -| sub-06 | ses-04 | dir-ffx_face_gender| -| sub-06 | ses-04 | task-archi_emotional_ffx_face_gender| -| sub-06 | ses-04 | task-archi_emotional_dir-ap_face_trusty| -| sub-06 | ses-04 | dir-ffx_expression_intention| -| sub-06 | ses-04 | task-archi_emotional_ffx_expression_intention| -| sub-02 | ses-00 | dir-pa_object_grasp| -| sub-11 | ses-01 | dir-pa_cue| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Visual_FG2.md b/deploy/datasets/supplements/data/ibc/left_Visual_FG2.md deleted file mode 100644 index b721d4b9f98b674b28299949e9c1be64ac4e001f..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Visual_FG2.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area FG2 (FusG) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area FG2 (FusG) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-06 | ses-00 | task-archi_spatial_dir-ap_rotation_side| -| sub-06 | ses-00 | dir-ap_rotation_side| -| sub-06 | ses-00 | dir-ffx_video_sentence| -| sub-06 | ses-00 | video_sentence| -| sub-06 | ses-00 | task-archi_standard_ffx_video_sentence| -| sub-06 | ses-00 | dir-pa_video_sentence| -| sub-06 | ses-00 | task-archi_standard_dir-pa_video_sentence| -| sub-14 | ses-01 | task-archi_emotional_ffx_expression_intention-control| -| sub-14 | ses-01 | task-archi_emotional_ffx_trusty_and_intention-control| -| sub-14 | ses-01 | trusty_and_intention-control| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Visual_FG3.md b/deploy/datasets/supplements/data/ibc/left_Visual_FG3.md deleted file mode 100644 index c8f35469606dd12c5b7b08ac868d33521b90a3eb..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Visual_FG3.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area FG3 (FusG) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area FG3 (FusG) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-14 | ses-11 | task-mtt_we_dir-pa_run-02_we_space-time_event| -| sub-14 | ses-11 | dir-pa_run-02_we_space-time_event| -| sub-11 | ses-01 | dir-pa_face-shape| -| sub-11 | ses-01 | task-hcp_emotion_dir-pa_face-shape| -| sub-11 | ses-01 | dir-ffx_face-shape| -| sub-11 | ses-01 | task-hcp_emotion_ffx_face-shape| -| sub-11 | ses-01 | face-shape| -| sub-12 | ses-02 | task-hcp_wm_dir-ap_tools-avg| -| sub-12 | ses-02 | dir-ap_tools-avg| -| sub-14 | ses-01 | task-archi_emotional_dir-pa_trusty_and_intention-control| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Visual_FG4.md b/deploy/datasets/supplements/data/ibc/left_Visual_FG4.md deleted file mode 100644 index c6bb5e819befa5fcfe8c452f7d2d6ba1551a889f..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Visual_FG4.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area FG4 (FusG) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area FG4 (FusG) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-09 | ses-05 | dir-ap_expression_intention-control| -| sub-09 | ses-05 | task-archi_emotional_dir-ap_expression_intention-control| -| sub-11 | ses-05 | task-archi_emotional_ffx_expression_intention-control| -| sub-11 | ses-05 | dir-ffx_expression_intention-control| -| sub-11 | ses-05 | expression_intention-control| -| sub-06 | ses-00 | task-archi_standard_dir-ap_reading-checkerboard| -| sub-06 | ses-00 | dir-ap_reading-checkerboard| -| sub-09 | ses-01 | dir-ffx_face| -| sub-09 | ses-01 | task-hcp_emotion_ffx_face| -| sub-09 | ses-01 | face| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Visual_hOc1.md b/deploy/datasets/supplements/data/ibc/left_Visual_hOc1.md deleted file mode 100644 index b8816a61f8e023782b73aa6b8bf3e8954c5c81fd..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Visual_hOc1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hOc1 (V1, 17, CalcS) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hOc1 (V1, 17, CalcS) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-09 | ses-04 | task-rsvp_language_dir-pa_run-00_simple| -| sub-09 | ses-04 | dir-pa_run-00_simple| -| sub-07 | ses-04 | face_gender-control| -| sub-02 | ses-01 | dir-ap_horizontal_checkerboard| -| sub-07 | ses-04 | dir-ffx_face_gender-control| -| sub-07 | ses-04 | task-archi_emotional_ffx_face_gender-control| -| sub-02 | ses-01 | task-archi_standard_dir-ap_horizontal_checkerboard| -| sub-07 | ses-04 | dir-pa_horizontal_checkerboard| -| sub-07 | ses-04 | task-archi_standard_dir-pa_horizontal_checkerboard| -| sub-13 | ses-21 | dir-pa_run-01_recognition_hit-correct_rejection| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Visual_hOc2.md b/deploy/datasets/supplements/data/ibc/left_Visual_hOc2.md deleted file mode 100644 index 98039e2f79ac6fd077a04c2f0dbf73b9d8269e6b..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Visual_hOc2.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hOc2 (V2, 18) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hOc2 (V2, 18) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-11 | ses-22 | dir-pa_run-01_recognition_self_hit| -| sub-11 | ses-22 | task-self_dir-pa_run-01_recognition_self_hit| -| sub-05 | ses-15 | food_quadratic| -| sub-05 | ses-15 | task-preference_food_ffx_food_quadratic| -| sub-05 | ses-15 | dir-ffx_food_quadratic| -| sub-11 | ses-22 | encode_other| -| sub-11 | ses-22 | recognition_hit| -| sub-11 | ses-22 | dir-ap_run-03_encode_other| -| sub-11 | ses-22 | recognition_other_hit| -| sub-11 | ses-22 | false_alarm| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Visual_hOc3d.md b/deploy/datasets/supplements/data/ibc/left_Visual_hOc3d.md deleted file mode 100644 index 1e2ce09e50ded299f794c93f49e6b76511c31fc5..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Visual_hOc3d.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hOc3d (Cuneus) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hOc3d (Cuneus) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-04 | ses-12 | sn_all_event_response| -| sub-05 | ses-03 | task-rsvp_language_dir-ap_run-05_sentence-jabberwocky| -| sub-05 | ses-03 | dir-ap_run-05_sentence-jabberwocky| -| sub-09 | ses-05 | task-archi_spatial_dir-ap_object_orientation| -| sub-09 | ses-05 | dir-ap_object_orientation| -| sub-05 | ses-02 | task-hcp_wm_dir-ap_0back_tools| -| sub-05 | ses-02 | dir-ap_0back_tools| -| sub-12 | ses-03 | dir-pa_vertical-horizontal| -| sub-12 | ses-03 | task-archi_standard_dir-pa_vertical-horizontal| -| sub-12 | ses-03 | task-archi_standard_dir-pa_vertical_checkerboard| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Visual_hOc3v.md b/deploy/datasets/supplements/data/ibc/left_Visual_hOc3v.md deleted file mode 100644 index d9c7449b1d51d6a775c18b9bd97cc2c69400b509..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Visual_hOc3v.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hOc3v (LingG) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hOc3v (LingG) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-13 | ses-04 | dir-pa_video_left_button_press| -| sub-13 | ses-04 | task-archi_standard_dir-pa_video_left_button_press| -| sub-14 | ses-21 | task-self_dir-ap_run-03_recognition_other_hit| -| sub-14 | ses-21 | dir-ap_run-03_recognition_other_hit| -| sub-14 | ses-01 | task-archi_social_dir-pa_false_belief_video| -| sub-14 | ses-01 | dir-pa_false_belief_video| -| sub-09 | ses-05 | task-archi_emotional_ffx_expression_control| -| sub-09 | ses-05 | expression_control| -| sub-09 | ses-05 | dir-ffx_expression_control| -| sub-11 | ses-05 | dir-pa_reading-listening| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Visual_hOc4d.md b/deploy/datasets/supplements/data/ibc/left_Visual_hOc4d.md deleted file mode 100644 index 2c004fe12718c7cfa39683344a1d0852d5ab5db2..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Visual_hOc4d.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hOc4d (Cuneus) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hOc4d (Cuneus) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-04 | ses-01 | task-hcp_emotion_dir-pa_shape-face| -| sub-04 | ses-01 | dir-pa_shape-face| -| sub-01 | ses-20 | vstm_quadratic| -| sub-02 | ses-06 | dir-ap_run-03_complex| -| sub-02 | ses-06 | task-rsvp_language_dir-ap_run-03_complex| -| sub-12 | ses-11 | dir-ap_run-03_we_space-time_event| -| sub-12 | ses-11 | task-mtt_we_dir-ap_run-03_we_space-time_event| -| sub-15 | ses-03 | 0back-2back| -| sub-15 | ses-03 | task-hcp_wm_ffx_0back-2back| -| sub-15 | ses-03 | dir-ffx_0back-2back| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Visual_hOc4la.md b/deploy/datasets/supplements/data/ibc/left_Visual_hOc4la.md deleted file mode 100644 index 124b323137828ba8952ef7680c65696847ee76a7..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Visual_hOc4la.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hOc4la (LOC) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hOc4la (LOC) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-02 | dir-ap_random| -| sub-07 | ses-02 | task-hcp_social_dir-ap_mental| -| sub-07 | ses-02 | task-hcp_social_dir-ap_random| -| sub-07 | ses-02 | dir-ap_mental| -| sub-13 | ses-02 | dir-pa_body-avg| -| sub-13 | ses-02 | task-hcp_wm_dir-pa_body-avg| -| sub-09 | ses-02 | random| -| sub-09 | ses-02 | dir-ffx_random| -| sub-09 | ses-02 | task-hcp_social_ffx_random| -| sub-14 | ses-03 | task-hcp_wm_ffx_body-avg| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Visual_hOc4lp.md b/deploy/datasets/supplements/data/ibc/left_Visual_hOc4lp.md deleted file mode 100644 index 267fc223df94e54e08acadf1dc3e843ca71ac877..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Visual_hOc4lp.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hOc4lp (LOC) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hOc4lp (LOC) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-13 | ses-15 | dir-ffx_painting_linear| -| sub-13 | ses-15 | painting_linear| -| sub-13 | ses-15 | task-preference_paintings_ffx_painting_linear| -| sub-12 | ses-01 | dir-ffx_face| -| sub-12 | ses-01 | task-hcp_emotion_ffx_face| -| sub-12 | ses-01 | face| -| sub-07 | ses-02 | dir-ffx_tools-avg| -| sub-07 | ses-02 | task-hcp_wm_dir-pa_tools-avg| -| sub-07 | ses-02 | tools-avg| -| sub-07 | ses-02 | task-hcp_wm_ffx_tools-avg| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Visual_hOc4v.md b/deploy/datasets/supplements/data/ibc/left_Visual_hOc4v.md deleted file mode 100644 index cafdfc49668414692e3e0fba0da46fe405d3410e..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Visual_hOc4v.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hOc4v (LingG) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hOc4v (LingG) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-04 | ses-04 | task-archi_emotional_dir-ap_expression_gender| -| sub-04 | ses-04 | dir-ap_expression_gender| -| sub-07 | ses-00 | task-archi_social_dir-ap_triangle_random| -| sub-07 | ses-00 | dir-ap_triangle_random| -| sub-14 | ses-04 | task-rsvp_language_dir-pa_run-00_complex-simple| -| sub-14 | ses-04 | dir-pa_run-00_complex-simple| -| sub-05 | ses-15 | dir-pa_face_constant| -| sub-05 | ses-15 | task-preference_faces_ffx_face_constant| -| sub-05 | ses-15 | dir-ffx_face_constant| -| sub-05 | ses-15 | task-preference_faces_dir-pa_face_constant| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Visual_hOc5.md b/deploy/datasets/supplements/data/ibc/left_Visual_hOc5.md deleted file mode 100644 index 65554538dddcf6b6649c9f3967c619b381a11cdf..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Visual_hOc5.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hOc5 (LOC) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hOc5 (LOC) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-08 | ses-01 | task-archi_social_dir-pa_triangle_random| -| sub-08 | ses-01 | dir-pa_triangle_random| -| sub-14 | ses-00 | task-archi_spatial_ffx_grasp-orientation| -| sub-14 | ses-00 | grasp-orientation| -| sub-14 | ses-00 | dir-ffx_grasp-orientation| -| sub-08 | ses-01 | task-archi_social_dir-ap_triangle_mental| -| sub-08 | ses-01 | dir-ap_triangle_mental| -| sub-08 | ses-01 | triangle_random| -| sub-08 | ses-01 | dir-ffx_triangle_random| -| sub-08 | ses-01 | task-archi_social_ffx_triangle_random| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/left_Visual_hOc6.md b/deploy/datasets/supplements/data/ibc/left_Visual_hOc6.md deleted file mode 100644 index 7def02d282eaeb82d59b5160375048b1264562bc..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/left_Visual_hOc6.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hOc6 (POS) of the left hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hOc6 (POS) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-00 | dir-pa_false_belief_video| -| sub-07 | ses-00 | task-archi_social_dir-pa_false_belief_video| -| sub-06 | ses-21 | dir-pa_talk| -| sub-06 | ses-21 | task-bang_ffx_talk| -| sub-06 | ses-21 | task-bang_dir-pa_talk| -| sub-06 | ses-21 | talk| -| sub-06 | ses-21 | dir-ffx_talk| -| sub-06 | ses-11 | task-mtt_we_dir-ap_run-03_we_all_time-space_cue| -| sub-06 | ses-11 | dir-ap_run-03_we_all_time-space_cue| -| sub-15 | ses-06 | task-preference_food_dir-ap_food_linear| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_AIPS_IP1.md b/deploy/datasets/supplements/data/ibc/right_AIPS_IP1.md deleted file mode 100644 index 20a155b00192407f816c7ce707ee3ea842f96347..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_AIPS_IP1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hIP1 (IPS) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hIP1 (IPS) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-17 | vstm_quadratic| -| sub-01 | ses-19 | task-preference_faces_dir-pa_face_linear| -| sub-01 | ses-19 | dir-pa_face_linear| -| sub-07 | ses-00 | false_belief_video| -| sub-07 | ses-00 | dir-ffx_false_belief_video| -| sub-07 | ses-00 | task-archi_social_ffx_false_belief_video| -| sub-12 | ses-11 | task-mtt_we_dir-pa_run-02_we_all_time-space_cue| -| sub-12 | ses-11 | dir-pa_run-02_we_all_time-space_cue| -| sub-08 | ses-03 | dir-ap_2back-0back| -| sub-08 | ses-03 | task-hcp_wm_dir-ap_2back-0back| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_AIPS_IP2.md b/deploy/datasets/supplements/data/ibc/right_AIPS_IP2.md deleted file mode 100644 index d13332a90ece21c186abe6eaf743a2b53867b947..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_AIPS_IP2.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hIP2 (IPS) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hIP2 (IPS) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-08 | ses-02 | dir-pa_math-story| -| sub-08 | ses-02 | task-hcp_language_dir-pa_math-story| -| sub-01 | ses-03 | dir-pa_math-story| -| sub-01 | ses-03 | math-story| -| sub-01 | ses-03 | task-hcp_language_ffx_math-story| -| sub-01 | ses-03 | task-hcp_language_dir-pa_math-story| -| sub-01 | ses-03 | dir-ffx_math-story| -| sub-04 | ses-01 | task-hcp_language_dir-ap_math-story| -| sub-04 | ses-01 | dir-ap_math-story| -| sub-08 | ses-03 | dir-ap_2back-0back| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_AIPS_IP3.md b/deploy/datasets/supplements/data/ibc/right_AIPS_IP3.md deleted file mode 100644 index 259fe770036c026e293c7f6f32dbb08f9d60a892..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_AIPS_IP3.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hIP3 (IPS) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hIP3 (IPS) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-04 | ses-00 | task-archi_spatial_dir-ap_saccades| -| sub-04 | ses-00 | dir-ap_saccades| -| sub-04 | ses-00 | dir-pa_saccades| -| sub-04 | ses-00 | task-archi_spatial_ffx_saccades| -| sub-04 | ses-00 | dir-ffx_saccades| -| sub-04 | ses-00 | saccades| -| sub-04 | ses-00 | task-archi_spatial_dir-pa_saccades| -| sub-01 | ses-07 | task-archi_standard_dir-pa_video_computation| -| sub-01 | ses-07 | dir-pa_video_computation| -| sub-15 | ses-03 | task-hcp_wm_dir-pa_2back-0back| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Amygdala_CM.md b/deploy/datasets/supplements/data/ibc/right_Amygdala_CM.md deleted file mode 100644 index 6fc83722564845585eb3336e447613ef3280b4b8..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Amygdala_CM.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in CM (Amygdala) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in CM (Amygdala) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-05 | ses-17 | dir-ap_run-01_vstm_quadratic| -| sub-05 | ses-17 | task-vstm_dir-ap_run-01_vstm_quadratic| -| sub-14 | ses-11 | task-mtt_we_dir-pa_run-02_eastside-westside_event| -| sub-14 | ses-11 | dir-pa_run-02_eastside-westside_event| -| sub-11 | ses-03 | complex-simple| -| sub-01 | ses-04 | 2back_body| -| sub-12 | ses-00 | task-archi_standard_dir-ap_computation| -| sub-13 | ses-17 | dir-pa_enumeration_linear| -| sub-07 | ses-03 | task-rsvp_language_dir-ap_run-04_jabberwocky| -| sub-13 | ses-04 | task-archi_standard_ffx_sentences| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Amygdala_IF.md b/deploy/datasets/supplements/data/ibc/right_Amygdala_IF.md deleted file mode 100644 index 27a8d0854c0c22f35ea066120f286d74b7f0db8c..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Amygdala_IF.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in IF (Amygdala) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in IF (Amygdala) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-05 | ses-17 | dir-ap_run-01_vstm_quadratic| -| sub-05 | ses-17 | task-vstm_dir-ap_run-01_vstm_quadratic| -| sub-01 | ses-04 | 2back_body| -| sub-12 | ses-00 | task-archi_standard_dir-ap_computation| -| sub-13 | ses-17 | dir-pa_enumeration_linear| -| sub-07 | ses-03 | task-rsvp_language_dir-ap_run-04_jabberwocky| -| sub-13 | ses-04 | task-archi_standard_ffx_sentences| -| sub-14 | ses-01 | dir-pa_non_speech_sound| -| sub-13 | ses-00 | dir-pa_right-left_button_press| -| sub-14 | ses-04 | dir-ap_run-05_word_list| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Amygdala_LB.md b/deploy/datasets/supplements/data/ibc/right_Amygdala_LB.md deleted file mode 100644 index 3c93de71c0ad287509e39c2f0045e257803520ec..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Amygdala_LB.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in LB (Amygdala) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in LB (Amygdala) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-00 | dir-ap_non_speech_sound| -| sub-07 | ses-00 | task-archi_social_dir-ap_non_speech_sound| -| sub-11 | ses-11 | dir-pa_run-01_we_time-space_event| -| sub-11 | ses-11 | task-mtt_we_dir-pa_run-01_we_time-space_event| -| sub-05 | ses-17 | dir-ap_run-01_vstm_quadratic| -| sub-05 | ses-17 | task-vstm_dir-ap_run-01_vstm_quadratic| -| sub-07 | ses-12 | task-mtt_we_dir-ap_run-03_we_all_time-space_cue| -| sub-07 | ses-12 | dir-ap_run-03_we_all_time-space_cue| -| sub-07 | ses-01 | dir-pa_reward-punishment| -| sub-07 | ses-01 | task-hcp_gambling_dir-pa_reward-punishment| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Amygdala_MF.md b/deploy/datasets/supplements/data/ibc/right_Amygdala_MF.md deleted file mode 100644 index 80ef9480804ff805332ac8207b6956a7e10d4787..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Amygdala_MF.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in MF (Amygdala) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in MF (Amygdala) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-01 | dir-pa_reward-punishment| -| sub-07 | ses-01 | task-hcp_gambling_dir-pa_reward-punishment| -| sub-01 | ses-04 | 2back_body| -| sub-12 | ses-00 | task-archi_standard_dir-ap_computation| -| sub-13 | ses-17 | dir-pa_enumeration_linear| -| sub-07 | ses-03 | task-rsvp_language_dir-ap_run-04_jabberwocky| -| sub-13 | ses-04 | task-archi_standard_ffx_sentences| -| sub-14 | ses-01 | dir-pa_non_speech_sound| -| sub-13 | ses-00 | dir-pa_right-left_button_press| -| sub-14 | ses-04 | dir-ap_run-05_word_list| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Amygdala_SF.md b/deploy/datasets/supplements/data/ibc/right_Amygdala_SF.md deleted file mode 100644 index 3ddf8f7c7b375c3724e75e06be8ca2e8997e6047..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Amygdala_SF.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in SF (Amygdala) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in SF (Amygdala) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-01 | dir-pa_reward-punishment| -| sub-07 | ses-01 | task-hcp_gambling_dir-pa_reward-punishment| -| sub-05 | ses-11 | task-mtt_we_dir-pa_run-01_we_before-after_event| -| sub-05 | ses-11 | dir-pa_run-01_we_before-after_event| -| sub-11 | ses-03 | complex-simple| -| sub-01 | ses-04 | 2back_body| -| sub-12 | ses-00 | task-archi_standard_dir-ap_computation| -| sub-13 | ses-17 | dir-pa_enumeration_linear| -| sub-07 | ses-03 | task-rsvp_language_dir-ap_run-04_jabberwocky| -| sub-13 | ses-04 | task-archi_standard_ffx_sentences| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Amygdala_VTM.md b/deploy/datasets/supplements/data/ibc/right_Amygdala_VTM.md deleted file mode 100644 index b75f0832ef330c5e903131b5ab4efd64b3849828..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Amygdala_VTM.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in VTM (Amygdala) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in VTM (Amygdala) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-01 | dir-pa_reward-punishment| -| sub-07 | ses-01 | task-hcp_gambling_dir-pa_reward-punishment| -| sub-01 | ses-04 | 2back_body| -| sub-12 | ses-00 | task-archi_standard_dir-ap_computation| -| sub-13 | ses-17 | dir-pa_enumeration_linear| -| sub-07 | ses-03 | task-rsvp_language_dir-ap_run-04_jabberwocky| -| sub-13 | ses-04 | task-archi_standard_ffx_sentences| -| sub-14 | ses-01 | dir-pa_non_speech_sound| -| sub-13 | ses-00 | dir-pa_right-left_button_press| -| sub-14 | ses-04 | dir-ap_run-05_word_list| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Auditory_Te10.md b/deploy/datasets/supplements/data/ibc/right_Auditory_Te10.md deleted file mode 100644 index b2a2de7c5a2a3342c864da6b267e5ad1f257e6b1..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Auditory_Te10.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area TE 1.0 (HESCHL) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area TE 1.0 (HESCHL) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-12 | ses-03 | task-archi_social_dir-ap_non_speech_sound| -| sub-12 | ses-03 | dir-ap_non_speech_sound| -| sub-02 | ses-00 | task-archi_social_dir-pa_false_belief-mechanistic_video| -| sub-02 | ses-00 | dir-pa_false_belief-mechanistic_video| -| sub-02 | ses-00 | task-archi_social_dir-ap_mechanistic_audio| -| sub-02 | ses-00 | dir-ap_mechanistic_audio| -| sub-14 | ses-00 | dir-pa_audio_left_button_press| -| sub-14 | ses-00 | task-archi_standard_dir-pa_audio_left_button_press| -| sub-02 | ses-00 | dir-ap_speech_sound| -| sub-02 | ses-00 | task-archi_social_dir-ap_speech_sound| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Auditory_Te11.md b/deploy/datasets/supplements/data/ibc/right_Auditory_Te11.md deleted file mode 100644 index c7837bfe64bee83d61de6da5d92378aabcc9e3bd..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Auditory_Te11.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area TE 1.1 (HESCHL) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area TE 1.1 (HESCHL) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-02 | ses-00 | task-archi_social_dir-pa_false_belief-mechanistic_video| -| sub-02 | ses-00 | dir-pa_false_belief-mechanistic_video| -| sub-02 | ses-00 | dir-pa_listening-reading| -| sub-02 | ses-00 | task-archi_standard_dir-pa_listening-reading| -| sub-09 | ses-04 | dir-ap_run-04_jabberwocky-pseudo| -| sub-09 | ses-04 | task-rsvp_language_dir-ap_run-04_jabberwocky-pseudo| -| sub-02 | ses-00 | task-archi_social_dir-ap_mechanistic_audio| -| sub-02 | ses-00 | dir-ap_mechanistic_audio| -| sub-02 | ses-00 | dir-ap_speech_sound| -| sub-02 | ses-00 | task-archi_social_dir-ap_speech_sound| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Auditory_Te12.md b/deploy/datasets/supplements/data/ibc/right_Auditory_Te12.md deleted file mode 100644 index eee47113483a160837c9c442a399822589ccd083..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Auditory_Te12.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area TE 1.2 (HESCHL) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area TE 1.2 (HESCHL) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-01 | ses-14 | dir-ap_run-03_we_all_space-time_cue| -| sub-01 | ses-14 | task-mtt_we_dir-ap_run-03_we_all_space-time_cue| -| sub-02 | ses-05 | task-hcp_wm_ffx_0back-2back| -| sub-02 | ses-05 | dir-ffx_0back-2back| -| sub-02 | ses-05 | 0back-2back| -| sub-02 | ses-06 | dir-ap_run-04_sentence-word| -| sub-02 | ses-06 | task-rsvp_language_dir-ap_run-04_sentence-word| -| sub-07 | ses-12 | task-mtt_we_dir-ap_run-03_we_eastside_event| -| sub-07 | ses-12 | dir-ap_run-03_we_eastside_event| -| sub-07 | ses-04 | task-archi_standard_dir-ap_sentences| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Bforebrain_123.md b/deploy/datasets/supplements/data/ibc/right_Bforebrain_123.md deleted file mode 100644 index 7187e4f6e05d2e6e5d1cdf38f7577765d188223b..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Bforebrain_123.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Ch 123 (Basal Forebrain) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Ch 123 (Basal Forebrain) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-08 | ses-04 | task-rsvp_language_dir-pa_run-02_complex-simple| -| sub-08 | ses-04 | dir-pa_run-02_complex-simple| -| sub-08 | ses-04 | complex-simple| -| sub-01 | ses-04 | 2back_body| -| sub-12 | ses-00 | task-archi_standard_dir-ap_computation| -| sub-13 | ses-17 | dir-pa_enumeration_linear| -| sub-07 | ses-03 | task-rsvp_language_dir-ap_run-04_jabberwocky| -| sub-13 | ses-04 | task-archi_standard_ffx_sentences| -| sub-14 | ses-01 | dir-pa_non_speech_sound| -| sub-13 | ses-00 | dir-pa_right-left_button_press| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Bforebrain_4.md b/deploy/datasets/supplements/data/ibc/right_Bforebrain_4.md deleted file mode 100644 index 5701225287097196ec463db7b697438aca40f979..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Bforebrain_4.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Ch 4 (Basal Forebrain) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Ch 4 (Basal Forebrain) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-01 | ses-04 | 2back_body| -| sub-12 | ses-00 | task-archi_standard_dir-ap_computation| -| sub-13 | ses-17 | dir-pa_enumeration_linear| -| sub-07 | ses-03 | task-rsvp_language_dir-ap_run-04_jabberwocky| -| sub-13 | ses-04 | task-archi_standard_ffx_sentences| -| sub-14 | ses-01 | dir-pa_non_speech_sound| -| sub-13 | ses-00 | dir-pa_right-left_button_press| -| sub-14 | ses-04 | dir-ap_run-05_word_list| -| sub-08 | ses-04 | task-rsvp_language_dir-pa_run-02_word_list| -| sub-06 | ses-00 | task-archi_standard_dir-ap_reading-listening| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Broca_44.md b/deploy/datasets/supplements/data/ibc/right_Broca_44.md deleted file mode 100644 index ebc550f315da194ea16c709cc536e99d30bc7c7f..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Broca_44.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 44 (IFG) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 44 (IFG) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-12 | dir-pa_run-01_we_before-after_event| -| sub-07 | ses-12 | task-mtt_we_dir-pa_run-01_we_before-after_event| -| sub-08 | ses-00 | dir-ap_motor-cognitive| -| sub-08 | ses-00 | task-archi_standard_dir-ap_motor-cognitive| -| sub-11 | ses-12 | sn_after-before_event| -| sub-08 | ses-00 | dir-ffx_motor-cognitive| -| sub-08 | ses-00 | task-archi_standard_ffx_motor-cognitive| -| sub-08 | ses-00 | motor-cognitive| -| sub-06 | ses-17 | task-vstm_dir-ap_run-02_vstm_quadratic| -| sub-06 | ses-17 | dir-ap_run-02_vstm_quadratic| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Broca_45.md b/deploy/datasets/supplements/data/ibc/right_Broca_45.md deleted file mode 100644 index 9fecd04cc64d43ef76f8837ebf4cb4ed2be4fa79..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Broca_45.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 45 (IFG) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 45 (IFG) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-14 | ses-12 | task-mtt_sn_dir-ap_run-03_sn_all_time-space_cue| -| sub-14 | ses-12 | dir-ap_run-03_sn_all_time-space_cue| -| sub-08 | ses-04 | dir-ap_run-05_complex-simple| -| sub-08 | ses-04 | task-rsvp_language_dir-ap_run-05_complex-simple| -| sub-11 | ses-03 | dir-ap_run-05_word-pseudo| -| sub-11 | ses-03 | task-rsvp_language_dir-ap_run-05_word-pseudo| -| sub-14 | ses-02 | task-hcp_motor_dir-pa_right_hand| -| sub-14 | ses-02 | dir-pa_right_hand| -| sub-02 | ses-01 | task-archi_emotional_dir-pa_trusty_and_intention-gender| -| sub-02 | ses-01 | dir-pa_trusty_and_intention-gender| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Cerebellum_Ndentd.md b/deploy/datasets/supplements/data/ibc/right_Cerebellum_Ndentd.md deleted file mode 100644 index 66022b875b958f8269bd6df495a9f7b065ddf4aa..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Cerebellum_Ndentd.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Dorsal Dentate Nucleus (Cerebellum) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Dorsal Dentate Nucleus (Cerebellum) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-13 | ses-16 | task-pain_movie_dir-pa_movie_mental-pain| -| sub-13 | ses-16 | dir-pa_movie_mental-pain| -| sub-12 | ses-19 | vstm_quadratic| -| sub-01 | ses-04 | 2back_body| -| sub-12 | ses-00 | task-archi_standard_dir-ap_computation| -| sub-13 | ses-17 | dir-pa_enumeration_linear| -| sub-07 | ses-03 | task-rsvp_language_dir-ap_run-04_jabberwocky| -| sub-13 | ses-04 | task-archi_standard_ffx_sentences| -| sub-14 | ses-01 | dir-pa_non_speech_sound| -| sub-13 | ses-00 | dir-pa_right-left_button_press| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Cerebellum_Ndentv.md b/deploy/datasets/supplements/data/ibc/right_Cerebellum_Ndentv.md deleted file mode 100644 index e95174e4e233dbd445f8f75247fc8d93e01509f1..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Cerebellum_Ndentv.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Ventral Dentate Nucleus (Cerebellum) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Ventral Dentate Nucleus (Cerebellum) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-01 | ses-04 | 2back_body| -| sub-12 | ses-00 | task-archi_standard_dir-ap_computation| -| sub-13 | ses-17 | dir-pa_enumeration_linear| -| sub-07 | ses-03 | task-rsvp_language_dir-ap_run-04_jabberwocky| -| sub-13 | ses-04 | task-archi_standard_ffx_sentences| -| sub-14 | ses-01 | dir-pa_non_speech_sound| -| sub-13 | ses-00 | dir-pa_right-left_button_press| -| sub-14 | ses-04 | dir-ap_run-05_word_list| -| sub-08 | ses-04 | task-rsvp_language_dir-pa_run-02_word_list| -| sub-06 | ses-00 | task-archi_standard_dir-ap_reading-listening| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Cerebellum_Nfast.md b/deploy/datasets/supplements/data/ibc/right_Cerebellum_Nfast.md deleted file mode 100644 index 12276e11d027ac7042f2c3c3d115a5040cf297f3..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Cerebellum_Nfast.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Fastigial Nucleus (Cerebellum) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Fastigial Nucleus (Cerebellum) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-11 | ses-11 | we_after-before_event| -| sub-01 | ses-04 | 2back_body| -| sub-12 | ses-00 | task-archi_standard_dir-ap_computation| -| sub-13 | ses-17 | dir-pa_enumeration_linear| -| sub-07 | ses-03 | task-rsvp_language_dir-ap_run-04_jabberwocky| -| sub-13 | ses-04 | task-archi_standard_ffx_sentences| -| sub-14 | ses-01 | dir-pa_non_speech_sound| -| sub-13 | ses-00 | dir-pa_right-left_button_press| -| sub-14 | ses-04 | dir-ap_run-05_word_list| -| sub-08 | ses-04 | task-rsvp_language_dir-pa_run-02_word_list| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Cerebellum_Ninterp.md b/deploy/datasets/supplements/data/ibc/right_Cerebellum_Ninterp.md deleted file mode 100644 index 2fb3b5fd90c7d1db89d77d14ab2d9a1c2608538a..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Cerebellum_Ninterp.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Interposed Nucleus (Cerebellum) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Interposed Nucleus (Cerebellum) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-01 | ses-04 | 2back_body| -| sub-12 | ses-00 | task-archi_standard_dir-ap_computation| -| sub-13 | ses-17 | dir-pa_enumeration_linear| -| sub-07 | ses-03 | task-rsvp_language_dir-ap_run-04_jabberwocky| -| sub-13 | ses-04 | task-archi_standard_ffx_sentences| -| sub-14 | ses-01 | dir-pa_non_speech_sound| -| sub-13 | ses-00 | dir-pa_right-left_button_press| -| sub-14 | ses-04 | dir-ap_run-05_word_list| -| sub-08 | ses-04 | task-rsvp_language_dir-pa_run-02_word_list| -| sub-06 | ses-00 | task-archi_standard_dir-ap_reading-listening| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Cingulum_25.md b/deploy/datasets/supplements/data/ibc/right_Cingulum_25.md deleted file mode 100644 index 6e818ba9821f34ee63aee086b312f6044a0e1934..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Cingulum_25.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 25 (sACC) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 25 (sACC) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-06 | ses-00 | dir-pa_triangle_mental-random| -| sub-06 | ses-00 | task-archi_social_dir-pa_triangle_mental-random| -| sub-08 | ses-04 | task-rsvp_language_dir-pa_run-02_complex-simple| -| sub-08 | ses-04 | dir-pa_run-02_complex-simple| -| sub-05 | ses-15 | dir-pa_house_quadratic| -| sub-05 | ses-15 | task-preference_houses_dir-pa_house_quadratic| -| sub-01 | ses-07 | dir-ap_face_trusty-control| -| sub-01 | ses-07 | task-archi_emotional_dir-ap_face_trusty-control| -| sub-01 | ses-04 | 2back_body| -| sub-12 | ses-00 | task-archi_standard_dir-ap_computation| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Cingulum_33.md b/deploy/datasets/supplements/data/ibc/right_Cingulum_33.md deleted file mode 100644 index b39a2e4f99d3c0e8c68cf39b6312de231cdc64c9..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Cingulum_33.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 33 (ACC) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 33 (ACC) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-01 | ses-14 | task-mtt_we_dir-ap_run-03_we_all_time-space_cue| -| sub-01 | ses-14 | dir-ap_run-03_we_all_time-space_cue| -| sub-08 | ses-04 | task-rsvp_language_dir-pa_run-02_complex-simple| -| sub-08 | ses-04 | dir-pa_run-02_complex-simple| -| sub-15 | ses-15 | sn_space-time_event| -| sub-11 | ses-12 | dir-pa_run-01_sn_space-time_event| -| sub-11 | ses-12 | task-mtt_sn_dir-pa_run-01_sn_space-time_event| -| sub-06 | ses-04 | dir-pa_face_gender-control| -| sub-06 | ses-04 | task-archi_emotional_dir-pa_face_gender-control| -| sub-13 | ses-16 | dir-pa_movie_pain| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Cingulum_p24ab.md b/deploy/datasets/supplements/data/ibc/right_Cingulum_p24ab.md deleted file mode 100644 index 3e72a34dbb4a6df33c3d53420c164eed4c9dcb53..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Cingulum_p24ab.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area p24ab (pACC) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area p24ab (pACC) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-11 | ses-12 | dir-pa_run-01_sn_space-time_event| -| sub-11 | ses-12 | task-mtt_sn_dir-pa_run-01_sn_space-time_event| -| sub-06 | ses-11 | task-mtt_we_dir-pa_run-01_we_space-time_event| -| sub-06 | ses-11 | dir-pa_run-01_we_space-time_event| -| sub-06 | ses-04 | dir-pa_face_gender-control| -| sub-06 | ses-04 | task-archi_emotional_dir-pa_face_gender-control| -| sub-07 | ses-17 | task-enumeration_ffx_enumeration_quadratic| -| sub-07 | ses-17 | task-enumeration_dir-pa_enumeration_quadratic| -| sub-07 | ses-17 | dir-pa_enumeration_quadratic| -| sub-07 | ses-17 | dir-ffx_enumeration_quadratic| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Cingulum_p24c.md b/deploy/datasets/supplements/data/ibc/right_Cingulum_p24c.md deleted file mode 100644 index 45dcdf9188a42049cb3a2958b6ea8b1a1ead87b4..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Cingulum_p24c.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area p24c (pACC) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area p24c (pACC) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-05 | ses-16 | dir-ap_movie_mental-pain| -| sub-05 | ses-16 | task-pain_movie_dir-ap_movie_mental-pain| -| sub-07 | ses-17 | task-enumeration_ffx_enumeration_quadratic| -| sub-07 | ses-17 | task-enumeration_dir-pa_enumeration_quadratic| -| sub-07 | ses-17 | dir-pa_enumeration_quadratic| -| sub-07 | ses-17 | dir-ffx_enumeration_quadratic| -| sub-07 | ses-17 | enumeration_quadratic| -| sub-09 | ses-13 | dir-pa_run-01_sn_space-time_event| -| sub-09 | ses-13 | task-mtt_sn_dir-pa_run-01_sn_space-time_event| -| sub-06 | ses-11 | task-mtt_we_dir-pa_run-01_we_space-time_event| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Cingulum_p32.md b/deploy/datasets/supplements/data/ibc/right_Cingulum_p32.md deleted file mode 100644 index 18835444258b4ba4ceee6f749eb4cf80724c8a7f..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Cingulum_p32.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area p32 (pACC) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area p32 (pACC) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-01 | ses-19 | task-preference_faces_dir-pa_face_quadratic| -| sub-01 | ses-19 | dir-pa_face_quadratic| -| sub-06 | ses-16 | dir-ffx_movie_mental-pain| -| sub-06 | ses-16 | task-pain_movie_ffx_movie_mental-pain| -| sub-06 | ses-16 | task-pain_movie_dir-pa_movie_mental-pain| -| sub-06 | ses-16 | movie_mental-pain| -| sub-06 | ses-16 | dir-pa_movie_mental-pain| -| sub-05 | ses-11 | task-mtt_we_dir-ap_run-03_we_all_time-space_cue| -| sub-05 | ses-11 | dir-ap_run-03_we_all_time-space_cue| -| sub-13 | ses-16 | dir-ap_movie_mental-pain| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Cingulum_s24.md b/deploy/datasets/supplements/data/ibc/right_Cingulum_s24.md deleted file mode 100644 index f86e95b3170cdc6c82ca3fc01b16eaeeaeb9bbde..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Cingulum_s24.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area s24 (sACC) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area s24 (sACC) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-01 | ses-07 | dir-ap_face_trusty-control| -| sub-01 | ses-07 | task-archi_emotional_dir-ap_face_trusty-control| -| sub-15 | ses-02 | dir-pa_punishment-reward| -| sub-15 | ses-02 | task-hcp_gambling_dir-pa_punishment-reward| -| sub-09 | ses-02 | task-hcp_wm_dir-pa_0back-2back| -| sub-09 | ses-02 | dir-pa_0back-2back| -| sub-14 | ses-01 | task-archi_social_dir-ap_triangle_mental-random| -| sub-14 | ses-01 | dir-ap_triangle_mental-random| -| sub-11 | ses-12 | dir-pa_run-01_sn_space-time_event| -| sub-11 | ses-12 | task-mtt_sn_dir-pa_run-01_sn_space-time_event| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Cingulum_s32.md b/deploy/datasets/supplements/data/ibc/right_Cingulum_s32.md deleted file mode 100644 index d334aeec0a9726c7dfbac2201574520e4060ee65..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Cingulum_s32.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area s32 (sACC) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area s32 (sACC) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-11 | ses-05 | task-archi_standard_dir-pa_cognitive-motor| -| sub-11 | ses-05 | dir-pa_cognitive-motor| -| sub-07 | ses-15 | task-preference_houses_dir-ap_house_linear| -| sub-07 | ses-15 | dir-ap_house_linear| -| sub-14 | ses-01 | task-archi_social_dir-ap_triangle_mental-random| -| sub-14 | ses-01 | dir-ap_triangle_mental-random| -| sub-07 | ses-12 | task-mtt_we_dir-pa_run-02_we_after-before_event| -| sub-07 | ses-12 | dir-pa_run-02_we_after-before_event| -| sub-13 | ses-03 | dir-ap_run-03_complex-simple| -| sub-13 | ses-03 | task-rsvp_language_dir-ap_run-03_complex-simple| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_FrontalPole_Fp1.md b/deploy/datasets/supplements/data/ibc/right_FrontalPole_Fp1.md deleted file mode 100644 index 38b7da57b25955cf544a0bc694f2ee270b15b13f..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_FrontalPole_Fp1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area Fp1 (FPole) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area Fp1 (FPole) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-12 | ses-12 | dir-pa_run-02_sn_space-time_event| -| sub-12 | ses-12 | task-mtt_sn_dir-pa_run-02_sn_space-time_event| -| sub-14 | ses-21 | dir-pa_run-01_recognition_self-other| -| sub-14 | ses-21 | task-self_dir-pa_run-01_recognition_self-other| -| sub-14 | ses-21 | recognition_self-other| -| sub-11 | ses-03 | task-rsvp_language_dir-pa_run-01_word-pseudo| -| sub-11 | ses-03 | dir-pa_run-01_word-pseudo| -| sub-05 | ses-03 | task-rsvp_language_dir-pa_run-02_complex| -| sub-05 | ses-03 | task-rsvp_language_dir-pa_run-02_word_list| -| sub-05 | ses-03 | task-rsvp_language_dir-pa_run-02_simple| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_FrontalPole_Fp2.md b/deploy/datasets/supplements/data/ibc/right_FrontalPole_Fp2.md deleted file mode 100644 index 022f579dfd39262615dc83b86436c0e589051167..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_FrontalPole_Fp2.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area Fp2 (FPole) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area Fp2 (FPole) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-12 | ses-03 | dir-pa_face_trusty-control| -| sub-12 | ses-03 | task-archi_emotional_dir-pa_face_trusty-control| -| sub-14 | ses-16 | dir-ap_movie_mental-pain| -| sub-14 | ses-16 | task-pain_movie_dir-ap_movie_mental-pain| -| sub-13 | ses-11 | dir-pa_run-02_we_before-after_event| -| sub-13 | ses-11 | task-mtt_we_dir-pa_run-02_we_before-after_event| -| sub-02 | ses-04 | dir-ap_tongue| -| sub-02 | ses-04 | task-hcp_motor_dir-ap_tongue| -| sub-05 | ses-12 | dir-pa_run-02_sn_all_time_cue| -| sub-05 | ses-12 | task-mtt_sn_dir-pa_run-02_sn_all_time_cue| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Hippocampus_DG.md b/deploy/datasets/supplements/data/ibc/right_Hippocampus_DG.md deleted file mode 100644 index e17ccbfcc93454c2152a3944d203394ae3ea9f99..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Hippocampus_DG.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in DG (Hippocampus) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in DG (Hippocampus) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-12 | ses-04 | dir-ap_run-03_jabberwocky-pseudo| -| sub-12 | ses-04 | task-rsvp_language_dir-ap_run-03_jabberwocky-pseudo| -| sub-12 | ses-00 | task-archi_standard_ffx_computation-sentences| -| sub-12 | ses-00 | dir-ffx_computation-sentences| -| sub-12 | ses-00 | computation-sentences| -| sub-13 | ses-11 | dir-ap_run-03_we_all_time-space_cue| -| sub-13 | ses-11 | task-mtt_we_dir-ap_run-03_we_all_time-space_cue| -| sub-15 | ses-06 | dir-ffx_food_quadratic| -| sub-15 | ses-06 | food_quadratic| -| sub-15 | ses-06 | task-preference_food_ffx_food_quadratic| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Hippocampus_HATA.md b/deploy/datasets/supplements/data/ibc/right_Hippocampus_HATA.md deleted file mode 100644 index f0a9ce6931a87b3dc02c03bac1903af19e93b172..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Hippocampus_HATA.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in HATA (Hippocampus) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in HATA (Hippocampus) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-01 | dir-pa_reward-punishment| -| sub-07 | ses-01 | task-hcp_gambling_dir-pa_reward-punishment| -| sub-05 | ses-11 | task-mtt_we_dir-pa_run-01_we_before-after_event| -| sub-05 | ses-11 | dir-pa_run-01_we_before-after_event| -| sub-01 | ses-04 | 2back_body| -| sub-12 | ses-00 | task-archi_standard_dir-ap_computation| -| sub-13 | ses-17 | dir-pa_enumeration_linear| -| sub-07 | ses-03 | task-rsvp_language_dir-ap_run-04_jabberwocky| -| sub-13 | ses-04 | task-archi_standard_ffx_sentences| -| sub-14 | ses-01 | dir-pa_non_speech_sound| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Hippocampus_Subc.md b/deploy/datasets/supplements/data/ibc/right_Hippocampus_Subc.md deleted file mode 100644 index ecc4f1f45f2aaa323bbdfbbfdb299d017d48804c..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Hippocampus_Subc.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Subiculum (Hippocampus) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Subiculum (Hippocampus) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-12 | task-mtt_we_dir-ap_run-03_we_all_time-space_cue| -| sub-07 | ses-12 | dir-ap_run-03_we_all_time-space_cue| -| sub-05 | ses-11 | task-mtt_we_dir-pa_run-01_we_before-after_event| -| sub-05 | ses-11 | dir-pa_run-01_we_before-after_event| -| sub-15 | ses-04 | task-rsvp_language_dir-pa_run-01_sentence-word| -| sub-15 | ses-04 | dir-pa_run-01_sentence-word| -| sub-12 | ses-00 | task-archi_standard_ffx_computation-sentences| -| sub-12 | ses-00 | dir-ffx_computation-sentences| -| sub-12 | ses-00 | computation-sentences| -| sub-11 | ses-11 | dir-pa_run-02_eastside-westside_event| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_IPL_PF.md b/deploy/datasets/supplements/data/ibc/right_IPL_PF.md deleted file mode 100644 index bffaa29aa333ada992e62c66a18ad5ffee3cbd5d..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_IPL_PF.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area PF (IPL) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area PF (IPL) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-04 | ses-12 | task-mtt_sn_dir-pa_run-01_sn_all_event_response| -| sub-04 | ses-12 | dir-pa_run-01_sn_all_event_response| -| sub-12 | ses-00 | dir-pa_sentences-computation| -| sub-12 | ses-00 | task-archi_standard_dir-pa_sentences-computation| -| sub-15 | ses-01 | task-archi_social_dir-pa_speech-non_speech| -| sub-15 | ses-01 | dir-pa_speech-non_speech| -| sub-04 | ses-11 | we_all_event_response| -| sub-04 | ses-01 | task-hcp_language_ffx_math-story| -| sub-04 | ses-01 | math-story| -| sub-04 | ses-01 | dir-ffx_math-story| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_IPL_PFcm.md b/deploy/datasets/supplements/data/ibc/right_IPL_PFcm.md deleted file mode 100644 index fce15cfba95c3f62412cdd5dbfde46c640e34ef0..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_IPL_PFcm.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area PFcm (IPL) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area PFcm (IPL) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-06 | ses-01 | dir-ap_reward-punishment| -| sub-06 | ses-01 | task-hcp_gambling_dir-ap_reward-punishment| -| sub-09 | ses-04 | dir-ap_run-05_probe| -| sub-09 | ses-04 | task-rsvp_language_dir-ap_run-05_probe| -| sub-08 | ses-11 | dir-pa_run-01_we_after-before_event| -| sub-08 | ses-11 | task-mtt_we_dir-pa_run-01_we_after-before_event| -| sub-15 | ses-06 | task-preference_food_dir-pa_food_linear| -| sub-15 | ses-06 | dir-pa_food_linear| -| sub-13 | ses-03 | dir-ap_run-05_jabberwocky-pseudo| -| sub-13 | ses-03 | task-rsvp_language_dir-ap_run-05_jabberwocky-pseudo| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_IPL_PFm.md b/deploy/datasets/supplements/data/ibc/right_IPL_PFm.md deleted file mode 100644 index 3a5181ede9d541bd432cdc1bb0d4a0c5229b8b9e..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_IPL_PFm.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area PFm (IPL) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area PFm (IPL) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-00 | dir-ffx_false_belief-mechanistic| -| sub-07 | ses-00 | false_belief-mechanistic| -| sub-07 | ses-00 | task-archi_social_ffx_false_belief-mechanistic| -| sub-07 | ses-00 | task-archi_social_dir-ap_false_belief-mechanistic| -| sub-07 | ses-00 | dir-ap_false_belief-mechanistic| -| sub-13 | ses-16 | task-emotional_pain_dir-pa_emotional-physical_pain| -| sub-13 | ses-16 | dir-pa_emotional-physical_pain| -| sub-12 | ses-11 | dir-pa_run-02_we_time-space_event| -| sub-12 | ses-11 | task-mtt_we_dir-pa_run-02_we_time-space_event| -| sub-08 | ses-01 | task-archi_spatial_dir-pa_hand-side| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_IPL_PFop.md b/deploy/datasets/supplements/data/ibc/right_IPL_PFop.md deleted file mode 100644 index 8129284f3c20658768b095604f62b8cd6d26b960..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_IPL_PFop.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area PFop (IPL) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area PFop (IPL) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-11 | ses-11 | we_all_time-space_cue| -| sub-02 | ses-06 | dir-ap_run-04_jabberwocky-pseudo| -| sub-02 | ses-06 | task-rsvp_language_dir-ap_run-04_jabberwocky-pseudo| -| sub-02 | ses-01 | task-archi_standard_dir-pa_motor-cognitive| -| sub-02 | ses-01 | dir-pa_motor-cognitive| -| sub-11 | ses-11 | task-mtt_we_dir-pa_run-01_westside-eastside_event| -| sub-11 | ses-11 | dir-pa_run-01_westside-eastside_event| -| sub-13 | ses-01 | dir-pa_tongue| -| sub-13 | ses-01 | task-hcp_motor_dir-pa_tongue| -| sub-13 | ses-01 | dir-ffx_tongue| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_IPL_PFt.md b/deploy/datasets/supplements/data/ibc/right_IPL_PFt.md deleted file mode 100644 index d6824ec79321741fe7d1a6266101613b89980ae1..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_IPL_PFt.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area PFt (IPL) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area PFt (IPL) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-04 | task-archi_spatial_dir-pa_hand-side| -| sub-07 | ses-04 | dir-pa_hand-side| -| sub-11 | ses-11 | task-mtt_we_dir-pa_run-01_westside-eastside_event| -| sub-11 | ses-11 | dir-pa_run-01_westside-eastside_event| -| sub-02 | ses-04 | dir-pa_math-story| -| sub-02 | ses-04 | task-hcp_language_dir-pa_math-story| -| sub-04 | ses-01 | task-hcp_language_ffx_math-story| -| sub-04 | ses-01 | math-story| -| sub-04 | ses-01 | dir-ffx_math-story| -| sub-02 | ses-00 | dir-pa_motor-cognitive| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_IPL_PGa.md b/deploy/datasets/supplements/data/ibc/right_IPL_PGa.md deleted file mode 100644 index 6b8d576e663945c9c306da91abdbf238e0a9ce84..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_IPL_PGa.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area PGa (IPL) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area PGa (IPL) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-09 | ses-17 | task-theory_of_mind_ffx_belief-photo| -| sub-09 | ses-17 | belief-photo| -| sub-09 | ses-17 | dir-ffx_belief-photo| -| sub-01 | ses-24 | recognition_self-other| -| sub-09 | ses-17 | dir-ap_belief-photo| -| sub-09 | ses-17 | task-theory_of_mind_dir-ap_belief-photo| -| sub-05 | ses-16 | task-theory_of_mind_dir-ap_belief-photo| -| sub-05 | ses-16 | dir-ap_belief-photo| -| sub-08 | ses-01 | task-archi_social_dir-pa_speech-non_speech| -| sub-08 | ses-01 | dir-pa_speech-non_speech| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_IPL_PGp.md b/deploy/datasets/supplements/data/ibc/right_IPL_PGp.md deleted file mode 100644 index 1209c28c6b34470acc9fe99db96882ce2d7ceeaa..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_IPL_PGp.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area PGp (IPL) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area PGp (IPL) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-09 | ses-17 | dir-ffx_movie_mental-pain| -| sub-09 | ses-17 | movie_mental-pain| -| sub-09 | ses-17 | task-pain_movie_ffx_movie_mental-pain| -| sub-09 | ses-17 | task-pain_movie_dir-ap_movie_mental-pain| -| sub-09 | ses-17 | dir-ap_movie_mental-pain| -| sub-02 | ses-01 | task-archi_emotional_dir-pa_face_trusty-control| -| sub-02 | ses-01 | dir-pa_face_trusty-control| -| sub-09 | ses-00 | task-archi_standard_ffx_cognitive-motor| -| sub-09 | ses-00 | dir-pa_cognitive-motor| -| sub-09 | ses-00 | cognitive-motor| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Insula_Id1.md b/deploy/datasets/supplements/data/ibc/right_Insula_Id1.md deleted file mode 100644 index f47fe07682449e7750f8472dfb7a08c2d7361426..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Insula_Id1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area Id1 (Insula) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area Id1 (Insula) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-05 | ses-00 | task-archi_standard_dir-pa_sentences-computation| -| sub-05 | ses-00 | dir-pa_sentences-computation| -| sub-15 | ses-06 | task-preference_houses_ffx_house_quadratic| -| sub-15 | ses-06 | house_quadratic| -| sub-15 | ses-06 | dir-ffx_house_quadratic| -| sub-15 | ses-06 | task-preference_houses_dir-pa_house_quadratic| -| sub-15 | ses-06 | dir-pa_house_quadratic| -| sub-08 | ses-04 | task-rsvp_language_dir-ap_run-04_sentence-jabberwocky| -| sub-08 | ses-04 | dir-ap_run-04_sentence-jabberwocky| -| sub-02 | ses-06 | task-rsvp_language_dir-ap_run-03_jabberwocky-pseudo| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Insula_Id7.md b/deploy/datasets/supplements/data/ibc/right_Insula_Id7.md deleted file mode 100644 index a5977e2af9d6fcb968baff85bb70048eb5cd874f..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Insula_Id7.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area Id7 (Insula) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area Id7 (Insula) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-02 | ses-01 | task-archi_social_dir-ap_triangle_mental-random| -| sub-02 | ses-01 | dir-ap_triangle_mental-random| -| sub-09 | ses-13 | dir-pa_run-02_sn_all_time-space_cue| -| sub-09 | ses-13 | task-mtt_sn_dir-pa_run-02_sn_all_time-space_cue| -| sub-02 | ses-00 | false_belief-mechanistic| -| sub-02 | ses-00 | task-archi_social_ffx_false_belief-mechanistic| -| sub-02 | ses-00 | dir-ffx_false_belief-mechanistic| -| sub-15 | ses-01 | task-archi_emotional_dir-ap_face_trusty-gender| -| sub-15 | ses-01 | dir-ap_face_trusty-gender| -| sub-07 | ses-17 | task-vstm_dir-ap_run-02_vstm_quadratic| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Insula_Ig1.md b/deploy/datasets/supplements/data/ibc/right_Insula_Ig1.md deleted file mode 100644 index f49f7ffd5ff34660f4c8f577dfe7d4799a53e1e7..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Insula_Ig1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area Ig1 (Insula) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area Ig1 (Insula) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-09 | ses-05 | speech-non_speech| -| sub-09 | ses-05 | task-archi_social_ffx_speech-non_speech| -| sub-09 | ses-05 | dir-ffx_speech-non_speech| -| sub-09 | ses-05 | dir-pa_speech-non_speech| -| sub-09 | ses-05 | task-archi_social_dir-pa_speech-non_speech| -| sub-02 | ses-00 | task-archi_social_dir-pa_false_belief-mechanistic_video| -| sub-02 | ses-00 | dir-pa_false_belief-mechanistic_video| -| sub-07 | ses-00 | dir-pa_triangle_mental-random| -| sub-07 | ses-00 | task-archi_social_dir-pa_triangle_mental-random| -| sub-01 | ses-04 | 2back_body| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Insula_Ig2.md b/deploy/datasets/supplements/data/ibc/right_Insula_Ig2.md deleted file mode 100644 index 1aae26e69e8512bdf2f3f02bf371bd15e7c696c0..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Insula_Ig2.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area Ig2 (Insula) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area Ig2 (Insula) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-02 | ses-00 | task-archi_social_dir-pa_false_belief-mechanistic_video| -| sub-02 | ses-00 | dir-pa_false_belief-mechanistic_video| -| sub-09 | ses-05 | speech-non_speech| -| sub-09 | ses-05 | task-archi_social_ffx_speech-non_speech| -| sub-09 | ses-05 | dir-ffx_speech-non_speech| -| sub-09 | ses-05 | dir-pa_speech-non_speech| -| sub-09 | ses-05 | task-archi_social_dir-pa_speech-non_speech| -| sub-01 | ses-04 | 2back_body| -| sub-12 | ses-00 | task-archi_standard_dir-ap_computation| -| sub-13 | ses-17 | dir-pa_enumeration_linear| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Motor_4a.md b/deploy/datasets/supplements/data/ibc/right_Motor_4a.md deleted file mode 100644 index 83b350de12d7e504a0e75a07a648a50766ce4344..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Motor_4a.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 4a (PreCG) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 4a (PreCG) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-14 | ses-04 | task-rsvp_language_dir-ap_run-03_jabberwocky-consonant_string| -| sub-14 | ses-04 | dir-ap_run-03_jabberwocky-consonant_string| -| sub-13 | ses-01 | task-hcp_motor_dir-pa_left_foot-avg| -| sub-13 | ses-01 | dir-pa_left_foot-avg| -| sub-13 | ses-01 | task-hcp_motor_ffx_left_foot-avg| -| sub-13 | ses-01 | left_foot-avg| -| sub-13 | ses-01 | dir-ffx_left_foot-avg| -| sub-08 | ses-02 | dir-ap_left_foot| -| sub-08 | ses-02 | task-hcp_motor_dir-ap_left_foot| -| sub-04 | ses-01 | dir-ap_left_foot-avg| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Motor_4p.md b/deploy/datasets/supplements/data/ibc/right_Motor_4p.md deleted file mode 100644 index 26d26b1f07f01705bc784a81eb7abcb43c75b611..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Motor_4p.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 4p (PreCG) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 4p (PreCG) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-02 | ses-01 | task-archi_standard_dir-ap_left-right_button_press| -| sub-02 | ses-01 | dir-ap_left-right_button_press| -| sub-02 | ses-01 | task-archi_standard_ffx_video_left_button_press| -| sub-02 | ses-01 | video_left_button_press| -| sub-02 | ses-01 | dir-ffx_video_left_button_press| -| sub-14 | ses-02 | task-hcp_motor_dir-ap_left_hand-avg| -| sub-14 | ses-02 | dir-ap_left_hand-avg| -| sub-13 | ses-03 | dir-ap_run-04_sentence-word| -| sub-13 | ses-03 | task-rsvp_language_dir-ap_run-04_sentence-word| -| sub-13 | ses-00 | dir-pa_left-right_button_press| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_OFC_Fo1.md b/deploy/datasets/supplements/data/ibc/right_OFC_Fo1.md deleted file mode 100644 index 212904f618d37880f4205b0f38a43b249802be08..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_OFC_Fo1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area Fo1 (OFC) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area Fo1 (OFC) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-04 | ses-03 | task-rsvp_language_dir-pa_run-01_complex-simple| -| sub-04 | ses-03 | dir-pa_run-01_complex-simple| -| sub-08 | ses-00 | task-archi_social_ffx_false_belief-mechanistic_audio| -| sub-08 | ses-00 | false_belief-mechanistic_audio| -| sub-08 | ses-00 | dir-ffx_false_belief-mechanistic_audio| -| sub-12 | ses-02 | dir-ap_match| -| sub-12 | ses-02 | task-hcp_relational_dir-ap_match| -| sub-12 | ses-03 | dir-ffx_false_belief-mechanistic_video| -| sub-12 | ses-03 | task-archi_social_ffx_false_belief-mechanistic_video| -| sub-12 | ses-03 | false_belief-mechanistic_video| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_OFC_Fo2.md b/deploy/datasets/supplements/data/ibc/right_OFC_Fo2.md deleted file mode 100644 index 8880c99f4afa3da144239166919852df81a07c1f..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_OFC_Fo2.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area Fo2 (OFC) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area Fo2 (OFC) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-09 | ses-18 | enumeration_quadratic| -| sub-09 | ses-18 | task-enumeration_dir-ap_enumeration_quadratic| -| sub-09 | ses-18 | dir-ffx_enumeration_quadratic| -| sub-09 | ses-18 | dir-ap_enumeration_quadratic| -| sub-09 | ses-18 | task-enumeration_ffx_enumeration_quadratic| -| sub-07 | ses-11 | task-mtt_sn_dir-ap_run-03_sn_all_event_response| -| sub-07 | ses-11 | dir-ap_run-03_sn_all_event_response| -| sub-01 | ses-05 | task-rsvp_language_dir-pa_run-02_complex-simple| -| sub-01 | ses-05 | dir-pa_run-02_complex-simple| -| sub-06 | ses-00 | dir-pa_triangle_mental-random| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_OFC_Fo3.md b/deploy/datasets/supplements/data/ibc/right_OFC_Fo3.md deleted file mode 100644 index 60df7403183eaff41d69c1d8ee4ea3a2983573b9..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_OFC_Fo3.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area Fo3 (OFC) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area Fo3 (OFC) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-14 | ses-02 | dir-ap_shape-face| -| sub-14 | ses-02 | task-hcp_emotion_dir-ap_shape-face| -| sub-06 | ses-04 | dir-ap_computation-sentences| -| sub-06 | ses-04 | task-archi_standard_dir-ap_computation-sentences| -| sub-06 | ses-02 | task-hcp_wm_dir-pa_2back_tools| -| sub-06 | ses-02 | dir-pa_2back_tools| -| sub-07 | ses-11 | dir-ap_run-03_sn_all_time-space_cue| -| sub-07 | ses-11 | task-mtt_sn_dir-ap_run-03_sn_all_time-space_cue| -| sub-04 | ses-12 | dir-pa_run-01_sn_time-space_event| -| sub-04 | ses-12 | task-mtt_sn_dir-pa_run-01_sn_time-space_event| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Operculum_OP1.md b/deploy/datasets/supplements/data/ibc/right_Operculum_OP1.md deleted file mode 100644 index 228472401647b8653b0172a66a1fa080fb089575..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Operculum_OP1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area OP1 (POperc) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area OP1 (POperc) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-06 | ses-04 | dir-ap_horizontal_checkerboard| -| sub-06 | ses-04 | task-archi_standard_dir-ap_horizontal_checkerboard| -| sub-01 | ses-15 | task-mtt_sn_dir-pa_run-01_southside-northside_event| -| sub-01 | ses-15 | dir-pa_run-01_southside-northside_event| -| sub-14 | ses-03 | dir-ap_mental-random| -| sub-14 | ses-03 | task-hcp_social_dir-ap_mental-random| -| sub-14 | ses-04 | dir-pa_run-02_probe| -| sub-14 | ses-04 | task-rsvp_language_dir-pa_run-02_probe| -| sub-01 | ses-07 | task-archi_standard_dir-pa_audio_left_button_press| -| sub-01 | ses-07 | dir-ffx_audio_left_button_press| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Operculum_OP2.md b/deploy/datasets/supplements/data/ibc/right_Operculum_OP2.md deleted file mode 100644 index c13bc2c226a859f69157700d18c609c33922e698..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Operculum_OP2.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area OP2 (POperc) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area OP2 (POperc) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-00 | dir-pa_triangle_mental-random| -| sub-07 | ses-00 | task-archi_social_dir-pa_triangle_mental-random| -| sub-09 | ses-05 | speech-non_speech| -| sub-09 | ses-05 | task-archi_social_ffx_speech-non_speech| -| sub-09 | ses-05 | dir-ffx_speech-non_speech| -| sub-09 | ses-05 | dir-pa_speech-non_speech| -| sub-09 | ses-05 | task-archi_social_dir-pa_speech-non_speech| -| sub-11 | ses-16 | dir-ap_face_linear| -| sub-11 | ses-16 | task-preference_faces_dir-ap_face_linear| -| sub-01 | ses-05 | task-rsvp_language_dir-ap_run-04_jabberwocky-pseudo| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Operculum_OP3.md b/deploy/datasets/supplements/data/ibc/right_Operculum_OP3.md deleted file mode 100644 index cd0facda70571ee87cc6a9243ba837bc0d5aee19..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Operculum_OP3.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area OP3 (POperc) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area OP3 (POperc) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-01 | ses-05 | task-rsvp_language_dir-ap_run-04_jabberwocky-pseudo| -| sub-01 | ses-05 | dir-ap_run-04_jabberwocky-pseudo| -| sub-11 | ses-16 | dir-ap_face_linear| -| sub-11 | ses-16 | task-preference_faces_dir-ap_face_linear| -| sub-06 | ses-00 | dir-ap_speech-non_speech| -| sub-06 | ses-00 | task-archi_social_dir-ap_speech-non_speech| -| sub-09 | ses-13 | dir-pa_run-02_sn_before-after_event| -| sub-09 | ses-13 | task-mtt_sn_dir-pa_run-02_sn_before-after_event| -| sub-06 | ses-11 | task-mtt_we_dir-ap_run-03_westside-eastside_event| -| sub-06 | ses-11 | dir-ap_run-03_westside-eastside_event| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Operculum_OP4.md b/deploy/datasets/supplements/data/ibc/right_Operculum_OP4.md deleted file mode 100644 index 982242396eeb67dabe6886cd5099cf5787a726c1..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Operculum_OP4.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area OP4 (POperc) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area OP4 (POperc) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-11 | ses-11 | task-mtt_we_dir-ap_run-03_we_space_event| -| sub-11 | ses-11 | dir-ap_run-03_we_space_event| -| sub-06 | ses-00 | dir-pa_false_belief-mechanistic_audio| -| sub-11 | ses-11 | dir-pa_run-02_we_average_reference| -| sub-06 | ses-00 | task-archi_social_dir-pa_false_belief-mechanistic_audio| -| sub-11 | ses-11 | task-mtt_we_dir-pa_run-02_we_average_reference| -| sub-11 | ses-05 | task-archi_social_dir-ap_false_belief_audio| -| sub-11 | ses-05 | dir-ap_false_belief_audio| -| sub-06 | ses-02 | dir-pa_0back_place| -| sub-06 | ses-02 | task-hcp_wm_dir-pa_0back_place| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_PIPS_hIP4.md b/deploy/datasets/supplements/data/ibc/right_PIPS_hIP4.md deleted file mode 100644 index 9e547f62c5ec48a117243794a4f5b4d6612d7dea..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_PIPS_hIP4.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hIP4 (IPS) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hIP4 (IPS) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-08 | ses-03 | task-hcp_wm_ffx_place-avg| -| sub-08 | ses-03 | place-avg| -| sub-08 | ses-03 | task-hcp_wm_dir-ap_place-avg| -| sub-08 | ses-03 | dir-ffx_place-avg| -| sub-08 | ses-03 | dir-ap_place-avg| -| sub-05 | ses-02 | task-hcp_wm_dir-ap_0back-2back| -| sub-05 | ses-02 | dir-ap_0back-2back| -| sub-06 | ses-04 | task-archi_social_dir-ap_triangle_mental| -| sub-06 | ses-04 | dir-ap_triangle_mental| -| sub-12 | ses-02 | dir-pa_place-avg| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_PIPS_hIP5.md b/deploy/datasets/supplements/data/ibc/right_PIPS_hIP5.md deleted file mode 100644 index 3f2564f615724ae3831587a248857ca031f2a3d2..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_PIPS_hIP5.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hIP5 (IPS) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hIP5 (IPS) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-05 | ses-12 | task-mtt_sn_dir-pa_run-02_sn_time-space_event| -| sub-05 | ses-12 | dir-pa_run-02_sn_time-space_event| -| sub-09 | ses-05 | task-archi_standard_ffx_video_computation| -| sub-09 | ses-05 | dir-ffx_video_computation| -| sub-09 | ses-05 | video_computation| -| sub-14 | ses-12 | dir-pa_run-01_sn_after-before_event| -| sub-14 | ses-12 | task-mtt_sn_dir-pa_run-01_sn_after-before_event| -| sub-05 | ses-12 | sn_time-space_event| -| sub-09 | ses-05 | task-archi_standard_dir-ap_video_computation| -| sub-09 | ses-05 | dir-ap_video_computation| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_PIPS_hIP6.md b/deploy/datasets/supplements/data/ibc/right_PIPS_hIP6.md deleted file mode 100644 index b2242cabc3dfff9e98f982e2e037feb0631ce044..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_PIPS_hIP6.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hIP6 (IPS) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hIP6 (IPS) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-01 | ses-00 | task-archi_social_ffx_false_belief-mechanistic_video| -| sub-01 | ses-00 | dir-ffx_false_belief-mechanistic_video| -| sub-01 | ses-00 | false_belief-mechanistic_video| -| sub-09 | ses-01 | math-story| -| sub-09 | ses-01 | task-hcp_language_ffx_math-story| -| sub-09 | ses-01 | dir-ffx_math-story| -| sub-08 | ses-00 | task-archi_standard_dir-ap_computation| -| sub-08 | ses-00 | dir-ap_computation| -| sub-08 | ses-11 | dir-pa_run-02_we_all_event_response| -| sub-08 | ses-11 | task-mtt_we_dir-pa_run-02_we_all_event_response| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_PIPS_hIP7.md b/deploy/datasets/supplements/data/ibc/right_PIPS_hIP7.md deleted file mode 100644 index 3f4d37aa4a22886e40c2bf7754ec81a6c17ad4d9..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_PIPS_hIP7.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hIP7 (IPS) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hIP7 (IPS) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-02 | ses-01 | dir-pa_triangle_random| -| sub-02 | ses-01 | task-archi_social_dir-pa_triangle_random| -| sub-02 | ses-01 | dir-ap_hand-side| -| sub-02 | ses-01 | task-archi_spatial_dir-ap_hand-side| -| sub-01 | ses-07 | dir-pa_cognitive-motor| -| sub-01 | ses-07 | task-archi_standard_dir-pa_cognitive-motor| -| sub-01 | ses-07 | dir-ffx_cognitive-motor| -| sub-01 | ses-07 | task-archi_standard_ffx_cognitive-motor| -| sub-01 | ses-07 | cognitive-motor| -| sub-12 | ses-16 | dir-ap_house_linear| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_PIPS_hIP8.md b/deploy/datasets/supplements/data/ibc/right_PIPS_hIP8.md deleted file mode 100644 index 5bd0d8ae6d198ee135fa1f2d8fdf258863b7a83f..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_PIPS_hIP8.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hIP8 (IPS) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hIP8 (IPS) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-08 | ses-04 | task-rsvp_language_dir-ap_run-03_consonant_string| -| sub-08 | ses-04 | dir-ap_run-03_consonant_string| -| sub-06 | ses-04 | task-archi_standard_dir-pa_video_computation| -| sub-06 | ses-04 | video_computation| -| sub-06 | ses-04 | dir-pa_video_computation| -| sub-06 | ses-04 | task-archi_standard_ffx_video_computation| -| sub-06 | ses-04 | dir-ffx_video_computation| -| sub-04 | ses-04 | task-archi_standard_ffx_cognitive-motor| -| sub-04 | ses-04 | cognitive-motor| -| sub-04 | ses-04 | dir-ffx_cognitive-motor| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_PIPS_hPO1.md b/deploy/datasets/supplements/data/ibc/right_PIPS_hPO1.md deleted file mode 100644 index bc15fdb3fd61c090068325fc4e5b386e1b887a70..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_PIPS_hPO1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hPO1 (POS) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hPO1 (POS) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-04 | ses-04 | task-archi_social_dir-ap_triangle_random| -| sub-04 | ses-04 | dir-ap_triangle_random| -| sub-05 | ses-02 | task-hcp_wm_ffx_0back-2back| -| sub-05 | ses-02 | dir-ffx_0back-2back| -| sub-05 | ses-02 | 0back-2back| -| sub-04 | ses-02 | random| -| sub-04 | ses-02 | dir-ffx_random| -| sub-04 | ses-02 | task-hcp_social_ffx_random| -| sub-09 | ses-01 | task-hcp_emotion_dir-ap_shape| -| sub-09 | ses-01 | dir-ap_shape| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_PSC_1.md b/deploy/datasets/supplements/data/ibc/right_PSC_1.md deleted file mode 100644 index 697ec7fcc80f67f0ff36df618771cbe68a7cb5fb..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_PSC_1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 1 (PostCG) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 1 (PostCG) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-12 | ses-00 | dir-pa_video_left_button_press| -| sub-12 | ses-00 | task-archi_standard_dir-pa_video_left_button_press| -| sub-12 | ses-00 | task-archi_standard_dir-pa_left-right_button_press| -| sub-12 | ses-00 | dir-pa_left-right_button_press| -| sub-12 | ses-00 | dir-ffx_left-right_button_press| -| sub-12 | ses-00 | task-archi_standard_ffx_left-right_button_press| -| sub-12 | ses-00 | left-right_button_press| -| sub-14 | ses-12 | task-mtt_sn_dir-ap_run-03_sn_all_time_cue| -| sub-14 | ses-12 | dir-ap_run-03_sn_all_time_cue| -| sub-04 | ses-04 | dir-ffx_left-right_button_press| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_PSC_2.md b/deploy/datasets/supplements/data/ibc/right_PSC_2.md deleted file mode 100644 index df45d82c440635d6331116b6084fc9b4b62a6f05..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_PSC_2.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 2 (PostCS) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 2 (PostCS) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-12 | ses-00 | task-archi_spatial_dir-pa_hand-side| -| sub-12 | ses-00 | dir-pa_hand-side| -| sub-09 | ses-05 | dir-ap_video_left_button_press| -| sub-09 | ses-05 | task-archi_standard_dir-ap_video_left_button_press| -| sub-14 | ses-11 | dir-ap_run-03_westside-eastside_event| -| sub-14 | ses-11 | task-mtt_we_dir-ap_run-03_westside-eastside_event| -| sub-02 | ses-01 | dir-ap_motor-cognitive| -| sub-02 | ses-01 | task-archi_standard_dir-ap_motor-cognitive| -| sub-12 | ses-03 | task-archi_standard_ffx_computation-sentences| -| sub-12 | ses-03 | dir-pa_computation-sentences| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_PSC_3a.md b/deploy/datasets/supplements/data/ibc/right_PSC_3a.md deleted file mode 100644 index a8e3ffe7b6b6604e3b9f41248561745bcd85d9dd..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_PSC_3a.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 3a (PostCG) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 3a (PostCG) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-08 | ses-02 | task-hcp_motor_dir-ap_tongue-avg| -| sub-08 | ses-02 | task-hcp_motor_dir-ap_tongue| -| sub-08 | ses-02 | dir-ap_tongue| -| sub-08 | ses-02 | dir-ap_tongue-avg| -| sub-01 | ses-00 | task-archi_standard_dir-ap_left-right_button_press| -| sub-01 | ses-00 | dir-ap_left-right_button_press| -| sub-07 | ses-12 | we_time-space_event| -| sub-08 | ses-02 | tongue| -| sub-08 | ses-02 | dir-ffx_tongue| -| sub-08 | ses-02 | dir-ffx_tongue-avg| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_PSC_3b.md b/deploy/datasets/supplements/data/ibc/right_PSC_3b.md deleted file mode 100644 index 347c29dea169ee7614c15a88f488bf45f7be7f56..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_PSC_3b.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 3b (PostCG) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 3b (PostCG) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-08 | ses-11 | dir-pa_run-01_westside-eastside_event| -| sub-08 | ses-11 | task-mtt_we_dir-pa_run-01_westside-eastside_event| -| sub-01 | ses-15 | task-mtt_sn_dir-ap_run-03_sn_before-after_event| -| sub-01 | ses-15 | dir-ap_run-03_sn_before-after_event| -| sub-11 | ses-03 | task-rsvp_language_dir-pa_run-02_jabberwocky-pseudo| -| sub-11 | ses-03 | dir-pa_run-02_jabberwocky-pseudo| -| sub-04 | ses-04 | dir-pa_left-right_button_press| -| sub-04 | ses-04 | task-archi_standard_dir-pa_left-right_button_press| -| sub-01 | ses-24 | dir-pa_run-01_recognition_self-other| -| sub-01 | ses-24 | task-self_dir-pa_run-01_recognition_self-other| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Premotor_6d1.md b/deploy/datasets/supplements/data/ibc/right_Premotor_6d1.md deleted file mode 100644 index cc9f9654af80780095e674160ef22b29a04b72c1..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Premotor_6d1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 6d1 (PreCG) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 6d1 (PreCG) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-05 | ses-15 | dir-pa_face_quadratic| -| sub-05 | ses-15 | task-preference_faces_dir-pa_face_quadratic| -| sub-04 | ses-12 | task-mtt_sn_dir-pa_run-02_sn_all_space-time_cue| -| sub-04 | ses-12 | dir-pa_run-02_sn_all_space-time_cue| -| sub-15 | ses-14 | dir-pa_run-02_westside-eastside_event| -| sub-15 | ses-14 | task-mtt_we_dir-pa_run-02_westside-eastside_event| -| sub-11 | ses-05 | task-archi_standard_dir-pa_left-right_button_press| -| sub-11 | ses-05 | dir-pa_video_left_button_press| -| sub-11 | ses-05 | dir-pa_left-right_button_press| -| sub-11 | ses-05 | task-archi_standard_dir-pa_video_left_button_press| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Premotor_6d2.md b/deploy/datasets/supplements/data/ibc/right_Premotor_6d2.md deleted file mode 100644 index 804e5a8b22f2fd06e9fefd7e253154313c712ec5..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Premotor_6d2.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 6d2 (PreCG) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 6d2 (PreCG) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-01 | ses-04 | task-hcp_relational_ffx_relational-match| -| sub-01 | ses-04 | dir-ffx_relational-match| -| sub-01 | ses-04 | relational-match| -| sub-15 | ses-05 | task-pain_movie_dir-ap_movie_pain| -| sub-15 | ses-05 | dir-ap_movie_pain| -| sub-04 | ses-01 | task-hcp_motor_ffx_right_foot| -| sub-04 | ses-01 | right_foot| -| sub-04 | ses-01 | dir-ffx_right_foot| -| sub-04 | ses-01 | task-hcp_motor_dir-pa_right_foot| -| sub-04 | ses-01 | dir-pa_right_foot| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Premotor_6d3.md b/deploy/datasets/supplements/data/ibc/right_Premotor_6d3.md deleted file mode 100644 index 7ab993e9da9f9d2d70d1e344a30f5bced4b6075b..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Premotor_6d3.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 6d3 (SFS) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 6d3 (SFS) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-14 | ses-11 | we_before-after_event| -| sub-11 | ses-03 | dir-ap_run-04_complex-simple| -| sub-11 | ses-03 | task-rsvp_language_dir-ap_run-04_complex-simple| -| sub-07 | ses-02 | task-hcp_wm_dir-pa_2back-0back| -| sub-07 | ses-02 | dir-pa_2back-0back| -| sub-13 | ses-04 | dir-pa_hand-side| -| sub-13 | ses-04 | task-archi_spatial_dir-pa_hand-side| -| sub-13 | ses-00 | dir-pa_reading-listening| -| sub-13 | ses-00 | task-archi_standard_dir-pa_reading-listening| -| sub-07 | ses-03 | dir-ap_run-05_word-pseudo| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_SPL_5Ci.md b/deploy/datasets/supplements/data/ibc/right_SPL_5Ci.md deleted file mode 100644 index 923a954521e30dee161cd038567ebaa131a8f62f..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_SPL_5Ci.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 5Ci (SPL) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 5Ci (SPL) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-12 | ses-00 | task-archi_standard_dir-ap_computation-sentences| -| sub-12 | ses-00 | dir-ap_computation-sentences| -| sub-05 | ses-12 | task-mtt_sn_dir-pa_run-02_sn_before-after_event| -| sub-05 | ses-12 | dir-pa_run-02_sn_before-after_event| -| sub-11 | ses-05 | task-archi_emotional_dir-ap_face_trusty-gender| -| sub-11 | ses-05 | dir-ap_face_trusty-gender| -| sub-13 | ses-12 | dir-pa_run-01_southside-northside_event| -| sub-13 | ses-12 | task-mtt_sn_dir-pa_run-01_southside-northside_event| -| sub-14 | ses-21 | dir-pa_run-02_recognition_self-other| -| sub-14 | ses-21 | task-self_dir-pa_run-02_recognition_self-other| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_SPL_5L.md b/deploy/datasets/supplements/data/ibc/right_SPL_5L.md deleted file mode 100644 index 2cd6310db7d35fd0201765251388ce64146f0439..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_SPL_5L.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 5L (SPL) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 5L (SPL) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-11 | ses-01 | task-hcp_motor_ffx_left_foot-avg| -| sub-11 | ses-01 | task-hcp_motor_dir-ap_left_foot-avg| -| sub-11 | ses-01 | dir-ffx_left_foot-avg| -| sub-11 | ses-01 | left_foot-avg| -| sub-11 | ses-01 | dir-ap_left_foot-avg| -| sub-11 | ses-01 | dir-pa_left_foot-avg| -| sub-11 | ses-01 | task-hcp_motor_dir-pa_left_foot-avg| -| sub-11 | ses-01 | dir-ffx_left_foot| -| sub-11 | ses-01 | dir-pa_left_foot| -| sub-11 | ses-01 | task-hcp_motor_ffx_left_foot| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_SPL_5M.md b/deploy/datasets/supplements/data/ibc/right_SPL_5M.md deleted file mode 100644 index 55889cdb51a9248d4c0781f229fc16314d20a622..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_SPL_5M.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 5M (SPL) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 5M (SPL) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-12 | we_time-space_event| -| sub-09 | ses-12 | task-mtt_we_dir-pa_run-01_eastside-westside_event| -| sub-09 | ses-12 | dir-pa_run-01_eastside-westside_event| -| sub-12 | ses-12 | dir-ap_run-03_sn_time-space_event| -| sub-12 | ses-12 | task-mtt_sn_dir-ap_run-03_sn_time-space_event| -| sub-02 | ses-04 | dir-ap_left_foot-avg| -| sub-02 | ses-04 | task-hcp_motor_dir-ap_left_foot-avg| -| sub-05 | ses-12 | task-mtt_sn_dir-pa_run-02_sn_before-after_event| -| sub-05 | ses-12 | dir-pa_run-02_sn_before-after_event| -| sub-15 | ses-02 | task-hcp_motor_dir-ap_left_foot-avg| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_SPL_7A.md b/deploy/datasets/supplements/data/ibc/right_SPL_7A.md deleted file mode 100644 index 66c7dfebe0686d27ab27891096750631f86a84bd..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_SPL_7A.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 7A (SPL) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 7A (SPL) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-06 | ses-04 | dir-ap_triangle_random| -| sub-12 | ses-04 | dir-ap_run-05_complex-simple| -| sub-12 | ses-04 | task-rsvp_language_dir-ap_run-05_complex-simple| -| sub-06 | ses-04 | task-archi_social_dir-ap_triangle_random| -| sub-13 | ses-04 | task-archi_social_dir-pa_false_belief-mechanistic| -| sub-13 | ses-04 | dir-pa_false_belief-mechanistic| -| sub-01 | ses-07 | dir-pa_hand-side| -| sub-01 | ses-07 | task-archi_spatial_dir-pa_hand-side| -| sub-07 | ses-00 | task-archi_spatial_dir-ap_saccades| -| sub-07 | ses-00 | dir-ap_saccades| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_SPL_7M.md b/deploy/datasets/supplements/data/ibc/right_SPL_7M.md deleted file mode 100644 index d31282a572d1caaa560c45025562ce4fbb78163d..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_SPL_7M.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 7M (SPL) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 7M (SPL) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-05 | ses-03 | dir-ap_run-04_probe| -| sub-05 | ses-03 | task-rsvp_language_dir-ap_run-04_probe| -| sub-13 | ses-17 | enumeration_quadratic| -| sub-13 | ses-17 | task-enumeration_ffx_enumeration_quadratic| -| sub-13 | ses-17 | dir-ffx_enumeration_quadratic| -| sub-05 | ses-02 | task-hcp_wm_ffx_2back_face| -| sub-05 | ses-02 | 2back_face| -| sub-05 | ses-02 | dir-ffx_2back_face| -| sub-05 | ses-02 | dir-ap_2back_face| -| sub-05 | ses-02 | task-hcp_wm_dir-ap_2back_face| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_SPL_7P.md b/deploy/datasets/supplements/data/ibc/right_SPL_7P.md deleted file mode 100644 index 2f359a45328c9c2cc901e518c6090cba1cf5efb2..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_SPL_7P.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 7P (SPL) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 7P (SPL) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-15 | ses-10 | dir-pa_run-02_vstm_linear| -| sub-15 | ses-10 | task-vstm_dir-pa_run-02_vstm_linear| -| sub-15 | ses-20 | dir-ap_run-04_recognition_self-other| -| sub-15 | ses-20 | task-self_dir-ap_run-04_recognition_self-other| -| sub-09 | ses-17 | dir-pa_movie_mental-pain| -| sub-09 | ses-17 | task-pain_movie_dir-pa_movie_mental-pain| -| sub-05 | ses-00 | task-archi_spatial_ffx_hand-side| -| sub-05 | ses-00 | dir-ffx_hand-side| -| sub-05 | ses-00 | hand-side| -| sub-14 | ses-16 | task-pain_movie_ffx_movie_mental-pain| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_SPL_7PC.md b/deploy/datasets/supplements/data/ibc/right_SPL_7PC.md deleted file mode 100644 index 4a98b491b9e07ff284e8b2cf3cb85c74bebbaa82..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_SPL_7PC.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 7PC (SPL) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 7PC (SPL) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-01 | ses-07 | dir-ffx_grasp-orientation| -| sub-01 | ses-07 | grasp-orientation| -| sub-01 | ses-07 | task-archi_spatial_ffx_grasp-orientation| -| sub-01 | ses-07 | task-archi_spatial_dir-ap_grasp-orientation| -| sub-01 | ses-07 | dir-ap_grasp-orientation| -| sub-07 | ses-17 | dir-ap_run-01_vstm_linear| -| sub-07 | ses-17 | task-vstm_dir-ap_run-01_vstm_linear| -| sub-09 | ses-05 | dir-pa_hand-side| -| sub-01 | ses-05 | task-rsvp_language_dir-ap_run-05_probe| -| sub-09 | ses-05 | task-archi_spatial_dir-pa_hand-side| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Supplementarymotor_presma.md b/deploy/datasets/supplements/data/ibc/right_Supplementarymotor_presma.md deleted file mode 100644 index e7dd2f47bb8c54ee9d9830192b374d21080bbc35..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Supplementarymotor_presma.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 6ma (preSMA, mesial SFG) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 6ma (preSMA, mesial SFG) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-06 | ses-03 | task-rsvp_language_dir-ap_run-04_complex-simple| -| sub-06 | ses-03 | dir-ap_run-04_complex-simple| -| sub-09 | ses-13 | task-mtt_sn_dir-pa_run-02_sn_all_space-time_cue| -| sub-09 | ses-13 | dir-pa_run-02_sn_all_space-time_cue| -| sub-12 | ses-18 | task-emotional_pain_ffx_emotional_pain| -| sub-12 | ses-18 | task-emotional_pain_dir-ap_emotional_pain| -| sub-12 | ses-18 | emotional_pain| -| sub-12 | ses-18 | dir-ffx_emotional_pain| -| sub-12 | ses-18 | dir-ap_emotional_pain| -| sub-11 | ses-12 | dir-ap_run-03_sn_before_event| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Supplementarymotor_sma.md b/deploy/datasets/supplements/data/ibc/right_Supplementarymotor_sma.md deleted file mode 100644 index 193eefc1a802fa5da92c7c6735ee9ede43ed2814..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Supplementarymotor_sma.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area 6mp (SMA, mesial SFG) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area 6mp (SMA, mesial SFG) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-01 | task-hcp_motor_ffx_cue| -| sub-07 | ses-01 | cue| -| sub-07 | ses-01 | dir-ffx_cue| -| sub-06 | ses-11 | dir-pa_run-01_westside-eastside_event| -| sub-06 | ses-11 | task-mtt_we_dir-pa_run-01_westside-eastside_event| -| sub-05 | ses-20 | recognition_other_hit| -| sub-06 | ses-04 | task-archi_standard_dir-pa_motor-cognitive| -| sub-06 | ses-04 | dir-pa_motor-cognitive| -| sub-14 | ses-00 | dir-pa_motor-cognitive| -| sub-14 | ses-00 | task-archi_standard_dir-pa_motor-cognitive| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Visual_FG1.md b/deploy/datasets/supplements/data/ibc/right_Visual_FG1.md deleted file mode 100644 index 4f9a055bed60df747ee35a3721bf085089eb029f..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Visual_FG1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area FG1 (FusG) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area FG1 (FusG) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-05 | ses-04 | task-archi_spatial_dir-ap_rotation_side| -| sub-05 | ses-04 | dir-ap_rotation_side| -| sub-05 | ses-04 | task-archi_spatial_ffx_rotation_side| -| sub-05 | ses-04 | dir-ffx_rotation_side| -| sub-05 | ses-04 | rotation_side| -| sub-05 | ses-15 | task-preference_faces_dir-ap_face_constant| -| sub-05 | ses-15 | dir-ap_face_constant| -| sub-04 | ses-03 | task-rsvp_language_dir-pa_run-01_probe| -| sub-04 | ses-03 | dir-pa_run-01_probe| -| sub-05 | ses-15 | dir-pa_painting_constant| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Visual_FG2.md b/deploy/datasets/supplements/data/ibc/right_Visual_FG2.md deleted file mode 100644 index ad5a3c196dc05ae72ebdd239c800baded564c4a4..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Visual_FG2.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area FG2 (FusG) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area FG2 (FusG) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-05 | ses-02 | task-hcp_wm_dir-pa_face-avg| -| sub-05 | ses-02 | dir-pa_face-avg| -| sub-05 | ses-02 | task-hcp_wm_ffx_face-avg| -| sub-05 | ses-02 | dir-ffx_face-avg| -| sub-05 | ses-02 | face-avg| -| sub-11 | ses-19 | dir-pa_run-01_vstm_constant| -| sub-11 | ses-19 | task-vstm_dir-pa_run-01_vstm_constant| -| sub-14 | ses-01 | dir-ap_expression_gender-control| -| sub-14 | ses-01 | task-archi_emotional_dir-ap_expression_gender-control| -| sub-11 | ses-19 | vstm_constant| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Visual_FG3.md b/deploy/datasets/supplements/data/ibc/right_Visual_FG3.md deleted file mode 100644 index 5f2e208b6ec28633868389fcd1d15dfeaa3f5a77..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Visual_FG3.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area FG3 (FusG) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area FG3 (FusG) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-11 | ses-16 | task-preference_food_dir-ap_food_constant| -| sub-11 | ses-16 | dir-ap_food_constant| -| sub-06 | ses-12 | task-mtt_sn_dir-ap_run-03_sn_after-before_event| -| sub-06 | ses-12 | dir-ap_run-03_sn_after-before_event| -| sub-11 | ses-16 | task-preference_food_dir-ap_food_linear| -| sub-11 | ses-16 | dir-ap_food_linear| -| sub-14 | ses-01 | task-archi_emotional_ffx_face_gender-control| -| sub-14 | ses-01 | face_gender-control| -| sub-14 | ses-01 | dir-ffx_face_gender-control| -| sub-05 | ses-01 | dir-ap_face-shape| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Visual_FG4.md b/deploy/datasets/supplements/data/ibc/right_Visual_FG4.md deleted file mode 100644 index 09a24221e85aca17e8c6c08ec98d6f253af34d5c..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Visual_FG4.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area FG4 (FusG) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area FG4 (FusG) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-11 | ses-05 | task-archi_emotional_ffx_face_gender-control| -| sub-11 | ses-05 | face_gender-control| -| sub-11 | ses-05 | dir-ffx_face_gender-control| -| sub-11 | ses-05 | dir-ap_expression_intention-control| -| sub-11 | ses-05 | task-archi_emotional_dir-ap_expression_intention-control| -| sub-12 | ses-03 | dir-ap_expression_intention-control| -| sub-12 | ses-03 | task-archi_emotional_dir-ap_expression_intention-control| -| sub-14 | ses-02 | dir-ap_face-shape| -| sub-14 | ses-02 | face-shape| -| sub-14 | ses-02 | task-hcp_emotion_dir-ap_face-shape| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Visual_hOc1.md b/deploy/datasets/supplements/data/ibc/right_Visual_hOc1.md deleted file mode 100644 index fe4d0f283f2574f224c0854be913290aa26bd72e..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Visual_hOc1.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hOc1 (V1, 17, CalcS) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hOc1 (V1, 17, CalcS) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-12 | ses-22 | dir-ap_run-03_encode_other| -| sub-12 | ses-22 | task-self_dir-ap_run-03_encode_other| -| sub-04 | ses-15 | dir-pa_house_constant| -| sub-04 | ses-15 | task-preference_houses_dir-pa_house_constant| -| sub-11 | ses-00 | task-archi_standard_dir-ap_horizontal-vertical| -| sub-11 | ses-00 | dir-ap_horizontal-vertical| -| sub-12 | ses-22 | dir-ap_run-03_false_alarm| -| sub-12 | ses-22 | dir-ap_run-03_recognition_hit| -| sub-12 | ses-22 | dir-ap_run-03_recognition_other_hit| -| sub-12 | ses-22 | task-self_dir-ap_run-03_recognition_other_hit| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Visual_hOc2.md b/deploy/datasets/supplements/data/ibc/right_Visual_hOc2.md deleted file mode 100644 index c710ca13a6da47ccee57aecc374b863acdcbd482..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Visual_hOc2.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hOc2 (V2, 18) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hOc2 (V2, 18) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-06 | ses-04 | dir-pa_vertical-horizontal| -| sub-06 | ses-04 | task-archi_standard_dir-pa_vertical-horizontal| -| sub-14 | ses-02 | task-hcp_emotion_dir-pa_face| -| sub-14 | ses-02 | dir-pa_face| -| sub-02 | ses-06 | task-rsvp_language_dir-pa_run-01_complex| -| sub-02 | ses-06 | dir-pa_run-01_complex| -| sub-09 | ses-01 | dir-pa_reward| -| sub-09 | ses-01 | dir-ffx_reward| -| sub-09 | ses-01 | reward| -| sub-09 | ses-01 | task-hcp_gambling_ffx_reward| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Visual_hOc3d.md b/deploy/datasets/supplements/data/ibc/right_Visual_hOc3d.md deleted file mode 100644 index 95239ae1f421a69937920ccd6c2f40d8d43548d2..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Visual_hOc3d.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hOc3d (Cuneus) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hOc3d (Cuneus) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-12 | ses-04 | task-rsvp_language_dir-ap_run-03_word-pseudo| -| sub-06 | ses-02 | dir-ap_relational| -| sub-12 | ses-04 | dir-ap_run-03_word-pseudo| -| sub-06 | ses-02 | task-hcp_relational_dir-ap_relational| -| sub-09 | ses-01 | task-hcp_gambling_ffx_reward-punishment| -| sub-09 | ses-01 | reward-punishment| -| sub-09 | ses-01 | dir-ffx_reward-punishment| -| sub-09 | ses-00 | dir-pa_vertical_checkerboard| -| sub-09 | ses-00 | task-archi_standard_dir-pa_vertical_checkerboard| -| sub-06 | ses-03 | dir-pa_run-02_jabberwocky-pseudo| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Visual_hOc3v.md b/deploy/datasets/supplements/data/ibc/right_Visual_hOc3v.md deleted file mode 100644 index d386033427075db5d2b3b286a342942e030d752b..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Visual_hOc3v.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hOc3v (LingG) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hOc3v (LingG) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-01 | ses-24 | recognition_hit-correct_rejection| -| sub-01 | ses-24 | dir-ap_run-03_correct_rejection| -| sub-01 | ses-24 | task-self_dir-ap_run-03_recognition_self_hit| -| sub-01 | ses-24 | task-self_dir-ap_run-03_recognition_hit-correct_rejection| -| sub-01 | ses-24 | task-self_dir-ap_run-03_instructions| -| sub-01 | ses-24 | task-self_dir-ap_run-03_recognition_hit| -| sub-01 | ses-24 | dir-ap_run-03_recognition_hit| -| sub-01 | ses-24 | task-self_dir-ap_run-03_recognition_other_hit| -| sub-01 | ses-24 | dir-ap_run-03_recognition_self_hit| -| sub-01 | ses-24 | dir-ap_run-03_recognition_hit-correct_rejection| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Visual_hOc4d.md b/deploy/datasets/supplements/data/ibc/right_Visual_hOc4d.md deleted file mode 100644 index 3703a38e6e65fe4e75de5db7c3ac7c33c97dc65b..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Visual_hOc4d.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hOc4d (Cuneus) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hOc4d (Cuneus) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-04 | ses-01 | dir-ap_reward| -| sub-04 | ses-01 | task-hcp_gambling_dir-ap_reward| -| sub-04 | ses-01 | dir-pa_reward-punishment| -| sub-04 | ses-01 | task-hcp_gambling_dir-pa_reward-punishment| -| sub-04 | ses-01 | task-hcp_gambling_ffx_reward-punishment| -| sub-04 | ses-01 | reward-punishment| -| sub-04 | ses-01 | dir-ffx_reward-punishment| -| sub-12 | ses-02 | task-hcp_wm_dir-pa_0back_tools| -| sub-12 | ses-02 | dir-pa_0back_tools| -| sub-12 | ses-02 | dir-ffx_0back_tools| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Visual_hOc4la.md b/deploy/datasets/supplements/data/ibc/right_Visual_hOc4la.md deleted file mode 100644 index 83f541ec6bc66daa244e285f47d29b59b2953b2e..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Visual_hOc4la.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hOc4la (LOC) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hOc4la (LOC) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-12 | ses-00 | dir-ffx_rotation_side| -| sub-12 | ses-00 | rotation_side| -| sub-12 | ses-00 | task-archi_spatial_ffx_rotation_side| -| sub-01 | ses-00 | task-archi_spatial_dir-pa_rotation_side| -| sub-01 | ses-00 | dir-pa_rotation_side| -| sub-02 | ses-06 | dir-pa_run-01_word_list| -| sub-02 | ses-06 | task-rsvp_language_dir-pa_run-01_word_list| -| sub-05 | ses-02 | mental| -| sub-05 | ses-02 | task-hcp_social_ffx_mental| -| sub-05 | ses-02 | dir-ffx_mental| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Visual_hOc4lp.md b/deploy/datasets/supplements/data/ibc/right_Visual_hOc4lp.md deleted file mode 100644 index 0a028d2fb8264a1822091cb12c70c0ad486ff6f8..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Visual_hOc4lp.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hOc4lp (LOC) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hOc4lp (LOC) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-06 | ses-02 | task-hcp_wm_dir-pa_0back-2back| -| sub-06 | ses-02 | dir-pa_0back-2back| -| sub-15 | ses-10 | vstm_linear| -| sub-08 | ses-03 | task-hcp_wm_dir-pa_tools-avg| -| sub-08 | ses-03 | dir-pa_tools-avg| -| sub-15 | ses-06 | dir-pa_food_constant| -| sub-15 | ses-06 | task-preference_food_dir-pa_food_constant| -| sub-09 | ses-18 | dir-ap_run-01_vstm_linear| -| sub-09 | ses-18 | task-vstm_dir-ap_run-01_vstm_linear| -| sub-09 | ses-13 | task-mtt_sn_dir-pa_run-02_sn_all_event_response| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Visual_hOc4v.md b/deploy/datasets/supplements/data/ibc/right_Visual_hOc4v.md deleted file mode 100644 index 1baa47395386be928c995fbde64aeadae6fb7fc3..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Visual_hOc4v.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hOc4v (LingG) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hOc4v (LingG) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-15 | ses-00 | task-archi_standard_dir-pa_reading-listening| -| sub-15 | ses-00 | dir-pa_reading-listening| -| sub-13 | ses-04 | dir-pa_expression_gender-control| -| sub-15 | ses-00 | dir-pa_video_computation| -| sub-13 | ses-04 | task-archi_emotional_dir-pa_expression_gender-control| -| sub-15 | ses-00 | task-archi_standard_dir-pa_video_computation| -| sub-13 | ses-02 | task-hcp_wm_dir-pa_2back_face| -| sub-13 | ses-02 | dir-pa_2back_face| -| sub-09 | ses-00 | task-archi_standard_dir-ap_reading-listening| -| sub-09 | ses-00 | dir-ffx_reading-listening| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Visual_hOc5.md b/deploy/datasets/supplements/data/ibc/right_Visual_hOc5.md deleted file mode 100644 index af7d1f26c1b56f073d94fd22f0244c8086dd88b0..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Visual_hOc5.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hOc5 (LOC) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hOc5 (LOC) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-06 | ses-02 | task-hcp_social_ffx_random| -| sub-06 | ses-02 | dir-ffx_random| -| sub-06 | ses-02 | random| -| sub-05 | ses-02 | task-hcp_wm_dir-pa_0back_body| -| sub-05 | ses-02 | dir-pa_0back_body| -| sub-15 | ses-00 | dir-ap_saccades| -| sub-15 | ses-00 | task-archi_spatial_dir-ap_saccades| -| sub-01 | ses-00 | dir-ap_saccades| -| sub-01 | ses-00 | task-archi_spatial_ffx_saccades| -| sub-01 | ses-00 | task-archi_spatial_dir-ap_saccades| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/ibc/right_Visual_hOc6.md b/deploy/datasets/supplements/data/ibc/right_Visual_hOc6.md deleted file mode 100644 index 591163a075f26723431923241d26dc97695ff892..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/ibc/right_Visual_hOc6.md +++ /dev/null @@ -1,22 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hOc6 (POS) of the right hemisphere - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -Following are the 10 measurements with the strongest activation in Area hOc6 (POS) of the right hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-07 | ses-15 | dir-ffx_house_quadratic| -| sub-07 | ses-15 | task-preference_houses_ffx_house_quadratic| -| sub-07 | ses-15 | house_quadratic| -| sub-07 | ses-00 | dir-ap_triangle_mental| -| sub-07 | ses-00 | task-archi_social_dir-ap_triangle_mental| -| sub-05 | ses-03 | task-rsvp_language_dir-ap_run-03_jabberwocky-pseudo| -| sub-05 | ses-03 | dir-ap_run-03_jabberwocky-pseudo| -| sub-05 | ses-11 | dir-pa_run-02_we_all_time-space_cue| -| sub-05 | ses-11 | task-mtt_we_dir-pa_run-02_we_all_time-space_cue| -| sub-14 | ses-04 | task-rsvp_language_dir-ap_run-04_jabberwocky-pseudo| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. \ No newline at end of file diff --git a/deploy/datasets/supplements/data/julich_brain_name_to_nexusid.json b/deploy/datasets/supplements/data/julich_brain_name_to_nexusid.json deleted file mode 100644 index bf9480225bf0af91c24b64e8ce8ad01d08e043ee..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/julich_brain_name_to_nexusid.json +++ /dev/null @@ -1,1019 +0,0 @@ -[ - [ - "Ch 123 (Basal Forebrain)", - { - "kg": { - "kgSchema": "minds/core/parcellationregion/v1.0.0", - "kgId": "bb111a95-e04c-4987-8254-4af4ed8b0022" - } - } - ], - [ - "Ch 4 (Basal Forebrain)", - { - "kg": { - "kgSchema": "minds/core/parcellationregion/v1.0.0", - "kgId": "a5c9d95f-8e7c-4454-91b6-a790387370fc" - } - } - ], - [ - "Ch 123 (Basal Forebrain)", - { - "kg": { - "kgSchema": "minds/core/parcellationregion/v1.0.0", - "kgId": "bb111a95-e04c-4987-8254-4af4ed8b0022" - } - } - ], - [ - "LB (Amygdala)", - { - "kg": { - 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Automatic fiber bundle segmentation in massive tractography datasets using a multi-subject bundle atlas. NeuroImage, 61(4),1083-99."}],"associatedRegion":"InferiorLongitudinal - Right","associatedParcellation":"Fibre Bundle Atlas - Long Bundle","datasetInfo":"MNIColin27_PMap.json"},"url":"https://neuroglancer.humanbrainproject.org/precomputed/Fiber_Bundle/DWM_atlas/right-hemisphere/Probability_Maps/InferiorLongitudinal_Right.nii"}]],["Probabilistic map of the right uncinate fasciculus (atlas of deep white matter fibre bundles, version 2018)",[{"filename":"Probabilistic Map for Uncinate - Right","name":"Probabilistic Map for Uncinate - Right","mimetype":"application/nifti","properties":{"name":null,"description":"","publications":[{"doi":"https://10.1016/j.neuroimage.2012.02.071","citation":"Guevara, P., Duclap, D., Poupon, C., Marrakchi-Kacem, L., Fillard, P., Le Bihan, D., Leboyer, M., Houenou, J., Mangin, J.- F (2012). Automatic fiber bundle segmentation in massive tractography datasets using a multi-subject bundle atlas. 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(POperc)",[{"filename":"Cytoarchitectonic Probabilistic Map for Area OP4 (POperc)","templateSpace":"MNI Colin 27","name":"Cytoarchitectonic Probabilistic Map for Area OP4 (POperc)","mimetype":"application/nifti","url":"https://neuroglancer.humanbrainproject.org/precomputed/JuBrain/v2.2c/PMaps/Operculum_OP4.nii","properties":{}}]],["Probabilistic cytoarchitectonic map of Ch 4 (Basal Forebrain)",[{"filename":"Cytoarchitectonic Probabilistic Map for Ch 4 (Basal Forebrain)","templateSpace":"MNI Colin 27","name":"Cytoarchitectonic Probabilistic Map for Ch 4 (Basal Forebrain)","mimetype":"application/nifti","url":"https://neuroglancer.humanbrainproject.org/precomputed/JuBrain/v2.2c/PMaps/Bforebrain_4.nii","properties":{}}]],["Probabilistic cytoarchitectonic map of Area hOc3d (Cuneus)",[{"filename":"Cytoarchitectonic Probabilistic Map for Area hOc3d (Cuneus)","templateSpace":"MNI Colin 27","name":"Cytoarchitectonic Probabilistic Map for Area hOc3d (Cuneus)","mimetype":"application/nifti","url":"https://neuroglancer.humanbrainproject.org/precomputed/JuBrain/v2.2c/PMaps/Visual_hOc3d.nii","properties":{}}]],["Probabilistic cytoarchitectonic map of Area hOc5 (LOC)",[{"filename":"Cytoarchitectonic Probabilistic Map for Area hOc5 (LOC)","templateSpace":"MNI Colin 27","name":"Cytoarchitectonic Probabilistic Map for Area hOc5 (LOC)","mimetype":"application/nifti","url":"https://neuroglancer.humanbrainproject.org/precomputed/JuBrain/v2.2c/PMaps/Visual_hOc5.nii","properties":{}}]],["Probabilistic cytoarchitectonic map of Dorsal Dentate Nucleus (Cerebellum)",[{"filename":"Cytoarchitectonic Probabilistic Map for Dorsal Dentate Nucleus (Cerebellum)","templateSpace":"MNI Colin 27","name":"Cytoarchitectonic Probabilistic Map for Dorsal Dentate Nucleus (Cerebellum)","mimetype":"application/nifti","url":"https://neuroglancer.humanbrainproject.org/precomputed/JuBrain/v2.2c/PMaps/Cerebellum_Ndentd.nii","properties":{}}]],["Probabilistic cytoarchitectonic map of Area OP2 (POperc)",[{"filename":"Cytoarchitectonic Probabilistic Map for Area OP2 (POperc)","templateSpace":"MNI Colin 27","name":"Cytoarchitectonic Probabilistic Map for Area OP2 (POperc)","mimetype":"application/nifti","url":"https://neuroglancer.humanbrainproject.org/precomputed/JuBrain/v2.2c/PMaps/Operculum_OP2.nii","properties":{}}]],["Probabilistic cytoarchitectonic map of Area PFm (IPL)",[{"filename":"Cytoarchitectonic Probabilistic Map for Area PFm (IPL)","templateSpace":"MNI Colin 27","name":"Cytoarchitectonic Probabilistic Map for Area PFm (IPL)","mimetype":"application/nifti","url":"https://neuroglancer.humanbrainproject.org/precomputed/JuBrain/v2.2c/PMaps/IPL_PFm.nii","properties":{}}]],["Probabilistic cytoarchitectonic map of Area TE 1.0 (HESCHL)",[{"filename":"Cytoarchitectonic Probabilistic Map for Area TE 1.0 (HESCHL)","templateSpace":"MNI Colin 27","name":"Cytoarchitectonic Probabilistic Map for Area TE 1.0 (HESCHL)","mimetype":"application/nifti","url":"https://neuroglancer.humanbrainproject.org/precomputed/JuBrain/v2.2c/PMaps/Auditory_Te10.nii","properties":{}}]],["Probabilistic cytoarchitectonic map of CA2 (Hippocampus)",[{"filename":"Cytoarchitectonic Probabilistic Map for CA2 (Hippocampus)","templateSpace":"MNI Colin 27","name":"Cytoarchitectonic Probabilistic Map for CA2 (Hippocampus)","mimetype":"application/nifti","url":"https://neuroglancer.humanbrainproject.org/precomputed/JuBrain/v2.2c/PMaps/Hippocampus_CA2.nii","properties":{}}]],["Probabilistic cytoarchitectonic map of Area 4a (PreCG)",[{"filename":"Cytoarchitectonic Probabilistic Map for Area 4a (PreCG)","templateSpace":"MNI Colin 27","name":"Cytoarchitectonic Probabilistic Map for Area 4a (PreCG)","mimetype":"application/nifti","url":"https://neuroglancer.humanbrainproject.org/precomputed/JuBrain/v2.2c/PMaps/Motor_4a.nii","properties":{}}]],["Probabilistic cytoarchitectonic map of Area PGa 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(POperc)","mimetype":"application/nifti","url":"https://neuroglancer.humanbrainproject.org/precomputed/JuBrain/v2.2c/PMaps/Operculum_OP3.nii","properties":{}}]],["Probabilistic cytoarchitectonic map of SF (Amygdala)",[{"filename":"Cytoarchitectonic Probabilistic Map for SF (Amygdala)","templateSpace":"MNI Colin 27","name":"Cytoarchitectonic Probabilistic Map for SF (Amygdala)","mimetype":"application/nifti","url":"https://neuroglancer.humanbrainproject.org/precomputed/JuBrain/v2.2c/PMaps/Amygdala_SF.nii","properties":{}}]],["Probabilistic cytoarchitectonic map of Area 3a (PostCG)",[{"filename":"Cytoarchitectonic Probabilistic Map for Area 3a (PostCG)","templateSpace":"MNI Colin 27","name":"Cytoarchitectonic Probabilistic Map for Area 3a (PostCG)","mimetype":"application/nifti","url":"https://neuroglancer.humanbrainproject.org/precomputed/JuBrain/v2.2c/PMaps/PSC_3a.nii","properties":{}}]],["Probabilistic cytoarchitectonic map of Area Ig2 (Insula)",[{"filename":"Cytoarchitectonic Probabilistic Map for Area Ig2 (Insula)","templateSpace":"MNI Colin 27","name":"Cytoarchitectonic Probabilistic Map for Area Ig2 (Insula)","mimetype":"application/nifti","url":"https://neuroglancer.humanbrainproject.org/precomputed/JuBrain/v2.2c/PMaps/Insula_Ig2.nii","properties":{}}]],["Probabilistic cytoarchitectonic map of Area OP1 (POperc)",[{"filename":"Cytoarchitectonic Probabilistic Map for Area OP1 (POperc)","templateSpace":"MNI Colin 27","name":"Cytoarchitectonic Probabilistic Map for Area OP1 (POperc)","mimetype":"application/nifti","url":"https://neuroglancer.humanbrainproject.org/precomputed/JuBrain/v2.2c/PMaps/Operculum_OP1.nii","properties":{}}]],["Probabilistic cytoarchitectonic map of Area 4p (PreCG)",[{"filename":"Cytoarchitectonic Probabilistic Map for Area 4p (PreCG)","templateSpace":"MNI Colin 27","name":"Cytoarchitectonic Probabilistic Map for Area 4p (PreCG)","mimetype":"application/nifti","url":"https://neuroglancer.humanbrainproject.org/precomputed/JuBrain/v2.2c/PMaps/Motor_4p.nii","properties":{}}]],["Probabilistic cytoarchitectonic map of Area 7A (SPL)",[{"filename":"Cytoarchitectonic Probabilistic Map for Area 7A (SPL)","templateSpace":"MNI Colin 27","name":"Cytoarchitectonic Probabilistic Map for Area 7A (SPL)","mimetype":"application/nifti","url":"https://neuroglancer.humanbrainproject.org/precomputed/JuBrain/v2.2c/PMaps/SPL_7A.nii","properties":{}}]]] \ No newline at end of file diff --git a/deploy/datasets/supplements/data/receptorPreview.json b/deploy/datasets/supplements/data/receptorPreview.json deleted file mode 100644 index 42946ebe56dff104ca37097d99f7242b1b5ed8f7..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/receptorPreview.json +++ /dev/null @@ -1 +0,0 @@ -[["Density measurements of different receptors for Area 44d",[{"name":"Receptor density fingerprint of Area 44d","filename":"fingerprint","mimetype":"application/json","properties":{"description":"**Multireceptor fingerprint for area 44d.** This polar plot shows the mean receptor densities in fmol/mg protein (solid shape) and standard deviation (dashed line) of 16 receptor binding sites in the area 44d. The data is based on the left and right hemisphere of one female subject (brain id: hg0201, sample ids: ID07 and ID08, age: 77, cause of death: lung edema) and the right hemispheres of two male subjects (brain id: hg0500, sample ids: ID09, age: 72, cause of death: cardiac arrest | brain id: hg0100, sample ids: ID12, age: 77, cause of death: coronary heart disease).","publications":[]},"data":{"chartType":"radar","labels":["AMPA (Glu)","kainate (Glu)","NMDA (Glu)","mGluR2/3 (Glu)","GABAá´€(GABA)","GABAá´ƒ(GABA)","GABAá´€(BZ)","Mâ‚(ACh)","Mâ‚‚(ACh)","M₃(ACh)","α₄β₂(ACh)","αâ‚(NA)","α₂(NA)","5-HTâ‚á´€(5-HT)","5-HTâ‚‚(5-HT)","Dâ‚(DA)"],"datasets":[{"label":"mean","data":["492","498","964","NA","1302","1487","1797","631","247","432","47","126","179","284","271","62"]},{"label":"mean_sd","data":["70","84","95","NA","91","64","105","49","20","32","13","9","15","38","11","20"]}],"chartOptions":{"scale":{"ticks":{"showLabelBackdrop":false}},"legend":{"display":true},"title":{"text":"Receptor density fingerprint of Area 44d (fmol/mg protein)","display":true},"elements":{"point":{"radius":0,"hoverRadius":8,"hitRadius":4}}},"colors":[{"borderColor":"rgba(255,255,255,1)","backgroundColor":"rgba(255,10,10,0.2)"},{"borderColor":"rgba(255,255,255,1)"}]}},{"name":"Sample autoradiograph of GABAá´€(BZ) in Area 44d","filename":"GABAá´€(BZ)/autoradiography","mimetype":"image/jpeg","properties":{"description":null,"publications":[]},"data":null,"url":"res/image/44d_bm_BZ.jpg"},{"name":"Sample autoradiograph of αâ‚(NA) in Area 44d","filename":"αâ‚(NA)/autoradiography","mimetype":"image/jpeg","properties":{"description":null,"publications":[]},"data":null,"url":"res/image/44d_bm_alpha1.jpg"},{"name":"Sample autoradiograph of NMDA (Glu) in Area 44d","filename":"NMDA (Glu)/autoradiography","mimetype":"image/jpeg","properties":{"description":null,"publications":[]},"data":null,"url":"res/image/44d_bm_NMDA.jpg"},{"name":"Sample autoradiograph of GABAá´€(GABA) in Area 44d","filename":"GABAá´€(GABA)/autoradiography","mimetype":"image/jpeg","properties":{"description":null,"publications":[]},"data":null,"url":"res/image/44d_bm_GABAA.jpg"},{"name":"Sample autoradiograph of α₂(NA) in Area 44d","filename":"α₂(NA)/autoradiography","mimetype":"image/jpeg","properties":{"description":null,"publications":[]},"data":null,"url":"res/image/44d_bm_alpha2.jpg"},{"name":"Sample autoradiograph of α₄β₂(ACh) in Area 44d","filename":"α₄β₂(ACh)/autoradiography","mimetype":"image/jpeg","properties":{"description":null,"publications":[]},"data":null,"url":"res/image/44d_bm_alpha4beta2.jpg"},{"name":"Sample autoradiograph of Mâ‚(ACh) in Area 44d","filename":"Mâ‚(ACh)/autoradiography","mimetype":"image/jpeg","properties":{"description":null,"publications":[]},"data":null,"url":"res/image/44d_bm_M1.jpg"},{"name":"Sample autoradiograph of 5-HTâ‚á´€(5-HT) in Area 44d","filename":"5-HTâ‚á´€(5-HT)/autoradiography","mimetype":"image/jpeg","properties":{"description":null,"publications":[]},"data":null,"url":"res/image/44d_bm_5-HT1A.jpg"},{"name":"Sample autoradiograph of kainate (Glu) in Area 44d","filename":"kainate (Glu)/autoradiography","mimetype":"image/jpeg","properties":{"description":null,"publications":[]},"data":null,"url":"res/image/44d_bm_kainate.jpg"},{"name":"Sample autoradiograph of Mâ‚‚(ACh) in Area 44d","filename":"Mâ‚‚(ACh)/autoradiography","mimetype":"image/jpeg","properties":{"description":null,"publications":[]},"data":null,"url":"res/image/44d_bm_M2.jpg"},{"name":"Sample autoradiograph of AMPA (Glu) in Area 44d","filename":"AMPA (Glu)/autoradiography","mimetype":"image/jpeg","properties":{"description":null,"publications":[]},"data":null,"url":"res/image/44d_bm_AMPA.jpg"},{"name":"Sample autoradiograph of Dâ‚(DA) in Area 44d","filename":"Dâ‚(DA)/autoradiography","mimetype":"image/jpeg","properties":{"description":null,"publications":[]},"data":null,"url":"res/image/44d_bm_D1.jpg"},{"name":"Sample autoradiograph of M₃(ACh) in Area 44d","filename":"M₃(ACh)/autoradiography","mimetype":"image/jpeg","properties":{"description":null,"publications":[]},"data":null,"url":"res/image/44d_bm_M3.jpg"},{"name":"Sample autoradiograph of mGluR2/3 (Glu) in Area 44d","filename":"mGluR2\\/3 (Glu)/autoradiography","mimetype":"image/jpeg","properties":{"description":null,"publications":[]},"data":null,"url":"res/image/44d_bm_mGluR2_3.jpg"},{"name":"Sample autoradiograph of 5-HTâ‚‚(5-HT) in Area 44d","filename":"5-HTâ‚‚(5-HT)/autoradiography","mimetype":"image/jpeg","properties":{"description":null,"publications":[]},"data":null,"url":"res/image/44d_bm_5-HT2.jpg"},{"name":"Sample autoradiograph of GABAá´ƒ(GABA) in Area 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(Glu)/autoradiography","mimetype":"image/jpeg","properties":{"description":null,"publications":[]},"data":null,"url":"datasets/previewFile?file=res%2Fimage%2Freceptor%2FFG1_bm_NMDA.jpg"},{"name":"Sample autoradiograph of GABAá´€(GABA) in Area FG1","filename":"GABAá´€(GABA)/autoradiography","mimetype":"image/jpeg","properties":{"description":null,"publications":[]},"data":null,"url":"datasets/previewFile?file=res%2Fimage%2Freceptor%2FFG1_bm_GABAA.jpg"},{"name":"Sample autoradiograph of α₂(NA) in Area FG1","filename":"α₂(NA)/autoradiography","mimetype":"image/jpeg","properties":{"description":null,"publications":[]},"data":null,"url":"datasets/previewFile?file=res%2Fimage%2Freceptor%2FFG1_bm_alpha2.jpg"},{"name":"Sample autoradiograph of α₄β₂(ACh) in Area FG1","filename":"α₄β₂(ACh)/autoradiography","mimetype":"image/jpeg","properties":{"description":null,"publications":[]},"data":null,"url":"datasets/previewFile?file=res%2Fimage%2Freceptor%2FFG1_bm_alpha4beta2.jpg"},{"name":"Sample autoradiograph of Mâ‚(ACh) in Area FG1","filename":"Mâ‚(ACh)/autoradiography","mimetype":"image/jpeg","properties":{"description":null,"publications":[]},"data":null,"url":"datasets/previewFile?file=res%2Fimage%2Freceptor%2FFG1_bm_M1.jpg"},{"name":"Sample autoradiograph of 5-HTâ‚á´€(5-HT) in Area FG1","filename":"5-HTâ‚á´€(5-HT)/autoradiography","mimetype":"image/jpeg","properties":{"description":null,"publications":[]},"data":null,"url":"datasets/previewFile?file=res%2Fimage%2Freceptor%2FFG1_bm_5-HT1A.jpg"},{"name":"Sample autoradiograph of kainate (Glu) in Area FG1","filename":"kainate (Glu)/autoradiography","mimetype":"image/jpeg","properties":{"description":null,"publications":[]},"data":null,"url":"datasets/previewFile?file=res%2Fimage%2Freceptor%2FFG1_bm_kainate.jpg"},{"name":"Sample autoradiograph of Mâ‚‚(ACh) in Area FG1","filename":"Mâ‚‚(ACh)/autoradiography","mimetype":"image/jpeg","properties":{"description":null,"publications":[]},"data":null,"url":"datasets/previewFile?file=res%2Fimage%2Freceptor%2FFG1_bm_M2.jpg"},{"name":"Sample autoradiograph of AMPA (Glu) in Area FG1","filename":"AMPA (Glu)/autoradiography","mimetype":"image/jpeg","properties":{"description":null,"publications":[]},"data":null,"url":"datasets/previewFile?file=res%2Fimage%2Freceptor%2FFG1_bm_AMPA.jpg"},{"name":"Sample autoradiograph of Dâ‚(DA) in Area FG1","filename":"Dâ‚(DA)/autoradiography","mimetype":"image/jpeg","properties":{"description":null,"publications":[]},"data":null,"url":"datasets/previewFile?file=res%2Fimage%2Freceptor%2FFG1_bm_D1.jpg"},{"name":"Sample autoradiograph of M₃(ACh) in Area FG1","filename":"M₃(ACh)/autoradiography","mimetype":"image/jpeg","properties":{"description":null,"publications":[]},"data":null,"url":"datasets/previewFile?file=res%2Fimage%2Freceptor%2FFG1_bm_M3.jpg"},{"name":"Sample autoradiograph of 5-HTâ‚‚(5-HT) in Area FG1","filename":"5-HTâ‚‚(5-HT)/autoradiography","mimetype":"image/jpeg","properties":{"description":null,"publications":[]},"data":null,"url":"datasets/previewFile?file=res%2Fimage%2Freceptor%2FFG1_bm_5-HT2.jpg"},{"name":"Sample autoradiograph of GABAá´ƒ(GABA) in Area FG1","filename":"GABAá´ƒ(GABA)/autoradiography","mimetype":"image/jpeg","properties":{"description":null,"publications":[]},"data":null,"url":"datasets/previewFile?file=res%2Fimage%2Freceptor%2FFG1_bm_GABAB.jpg"}]],["Density measurements of different receptors for Area PGa",[{"name":"Receptor density fingerprint of Area PGa","filename":"fingerprint","mimetype":"application/json","properties":{"description":null,"publications":[]},"data":{"chartType":"radar","labels":["AMPA (Glu)","kainate (Glu)","NMDA (Glu)","mGluR2/3 (Glu)","GABAá´€(GABA)","GABAá´ƒ(GABA)","GABAá´€(BZ)","Mâ‚(ACh)","Mâ‚‚(ACh)","M₃(ACh)","α₄β₂(ACh)","αâ‚(NA)","α₂(NA)","5-HTâ‚á´€(5-HT)","5-HTâ‚‚(5-HT)","Dâ‚(DA)"],"datasets":[{"label":"mean","data":["463","635","1259","3957","1998","2742","2442","479","172","827","70","361","698","303","441","136"]},{"label":"mean_sd","data":["187","405","278","1655","577","291","876","192","77","348","34","169","mg/mol","123","238","55"]}],"chartOptions":{"scale":{"ticks":{"showLabelBackdrop":false}},"legend":{"display":true},"title":{"text":"Receptor density fingerprint of Area PGa (fmol/mg protein)","display":true},"elements":{"point":{"radius":0,"hoverRadius":8,"hitRadius":4}}},"colors":[{"borderColor":"rgba(255,255,255,1)","backgroundColor":"rgba(5,198,198,0.2)"},{"borderColor":"rgba(255,255,255,1)"}]}}]]] diff --git a/deploy/datasets/supplements/data/waxholm.json b/deploy/datasets/supplements/data/waxholm.json deleted file mode 100644 index db52cc9345128274a7cd4a56bf2d49e7417dfaf1..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/data/waxholm.json +++ /dev/null @@ -1,112 +0,0 @@ -[ - { - "Dataset name": "3D high resolution SRXTM image data of cortical vasculature of rat brain.", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Rattus%20norvegicus#Dataset/943484f6f124311f2a60861e29f49b3e", - "Reference atlas": "Waxholm Space atlas of the Sprague Dawley rat brain, version 2", - "Semantic link(s)": "Neocortex", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2FHCPQ-MY8", - "PLA": "18", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Atlas of normal rat brain cyto- and myeloarchitecture", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Rattus%20norvegicus#Dataset/6ce1f96ae210b2335b75a793367e3865", - "Reference atlas": "Waxholm Space atlas of the Sprague Dawley rat brain, version 2", - "Semantic link(s)": "Whole Brain (v2.0)", - "Coordinate-based": "QuickNII", - "DOI": "https://doi.org/10.25493%2FC63A-FEY", - "PLA": "165", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Brain-wide distribution of glutamate type 1 transporter protein (GLT1)", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Mus%20musculus#Dataset/63bbb845ac6d2f1839f919c2ef0455bc", - "Reference atlas": "Waxholm Space atlas of the Sprague Dawley rat brain, version 2", - "Semantic link(s)": "Whole Brain (v2.0)", - "Coordinate-based": "QuickNII", - "DOI": "https://doi.org/10.25493%2FY147-2CE", - "PLA": "167", - "EMBARGO": "NO", - "Comments:": "Also in CCF v3" - }, - { - "Dataset name": "Brain-wide distribution of vesicular glutamate transporter type 3 (VGLUT3)", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Rattus%20norvegicus#Dataset/ca2de49ed9e6660242b937c8e9f2e4eb", - "Reference atlas": "Waxholm Space atlas of the Sprague Dawley rat brain, version 2", - "Semantic link(s)": "Whole Brain (v2.0)", - "Coordinate-based": "QuickNII", - "DOI": "https://doi.org/10.25493%2FGP15-1MS", - "PLA": "168", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Graphical representation of rat cortical vasculature reconstructed from high resolution 3D SRXTM data.", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Rattus%20norvegicus#Dataset/fc6865e8670b65aebec05b73f9e795c7", - "Reference atlas": "Waxholm Space atlas of the Sprague Dawley rat brain, version 2", - "Semantic link(s)": "Neocortex", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2FK243-13K", - "PLA": "17", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Large scale multi-channel EEG in rats", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Rattus%20norvegicus#Dataset/c5aab03945700ffb1a2fd2fd83819340", - "Reference atlas": "Waxholm Space atlas of the Sprague Dawley rat brain, version 2", - "Semantic link(s)": "Neocortex", - "Coordinate-based": "Point coordinates", - "DOI": "https://doi.org/10.25493%2F4SPM-V00", - "PLA": "", - "EMBARGO": "YES", - "Comments:": "" - }, - { - "Dataset name": "Loose-cell attached patch-clamp recordings from cerebellar granule cells", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Rattus%20norvegicus#Dataset/430c8508746cbd9f8f5c91b66ae97316", - "Reference atlas": "Waxholm Space atlas of the Sprague Dawley rat brain, version 2", - "Semantic link(s)": "Cerebellum", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2F6R48-E3V", - "PLA": "810", - "EMBARGO": "NO", - "Comments:": "" - }, - { - "Dataset name": "Recordings of cerebellar neuronal firing induced by currents steps", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Rattus%20norvegicus#Dataset/5e245cf67a42a14a56bc43913f7bf28a", - "Reference atlas": "Waxholm Space atlas of the Sprague Dawley rat brain, version 2", - "Semantic link(s)": "Cerebellum", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2F4AF6-WSD", - "PLA": "810", - "EMBARGO": "NO", - "Comments:": "Also in CCF v3" - }, - { - "Dataset name": "Recordings of excitatory postsynaptic currents from cerebellar neurons", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Rattus%20norvegicus#Dataset/a1ba394b5f353a67f9cec3549891d77b", - "Reference atlas": "Waxholm Space atlas of the Sprague Dawley rat brain, version 2", - "Semantic link(s)": "Cerebellum", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2FF2VK-MB4", - "PLA": "810", - "EMBARGO": "NO", - "Comments:": "Also in CCF v3" - }, - { - "Dataset name": "Recordings of excitatory postsynaptic potentials from cerebellar neurons", - "Dataset URL": "https://kg.humanbrainproject.org/webapp/?facet_type[0]=Dataset&facet_Dataset_subjects.children.species[0]=Rattus%20norvegicus#Dataset/2ea6f32e8dfd644d426b93aac0ae6eec", - "Reference atlas": "Waxholm Space atlas of the Sprague Dawley rat brain, version 2", - "Semantic link(s)": "Cerebellum", - "Coordinate-based": "", - "DOI": "https://doi.org/10.25493%2FG07Q-K87", - "PLA": "810", - "EMBARGO": "NO", - "Comments:": "Also in CCF v3" - } -] \ No newline at end of file diff --git a/deploy/datasets/supplements/previewFile.js b/deploy/datasets/supplements/previewFile.js deleted file mode 100644 index 8a48ef0170861cf3e378f6fb7c04118ef5f297a2..0000000000000000000000000000000000000000 --- a/deploy/datasets/supplements/previewFile.js +++ /dev/null @@ -1,72 +0,0 @@ -/** - * TODO deprecate? - */ - -const fs = require('fs') -const path = require('path') -const { reconfigureFlag, reconfigureUrl } = require('../../util/reconfigPrecomputedServer') - -const DISABLE_RECEPTOR_PREVIEW = process.env.DISABLE_RECEPTOR_PREVIEW -const DISABLE_JUBRAIN_PMAP = process.env.DISABLE_JUBRAIN_PMAP -const DISABLE_JUBRAIN_PMAP_V17 = process.env.DISABLE_JUBRAIN_PMAP_V17 -const DISABLE_JUBRAIN_PMAP_EXTRA = process.env.DISABLE_JUBRAIN_PMAP_EXTRA -const DISABLE_DWM_PMAP = process.env.DISABLE_DWM_PMAP -const HOSTNAME = process.env.HOSTNAME || 'http://localhost:3000' -const HOST_PATHNAME = process.env.HOST_PATHNAME || '' - -let previewMap = new Map(), - previewMapKeySet = new Set() - -const readFile = (filename) => new Promise((resolve) => { - fs.readFile(path.join(__dirname, 'data', filename), 'utf-8', (err, data) => { - if (err){ - console.warn('read file error', err) - return resolve([]) - } - resolve(JSON.parse(data)) - }) -}) - -Promise.all([ - DISABLE_RECEPTOR_PREVIEW ? Promise.resolve([]) : readFile('receptorPreview.json'), - DISABLE_JUBRAIN_PMAP ? Promise.resolve([]) : readFile('pmapJubrainPreview.json'), - DISABLE_DWM_PMAP ? Promise.resolve([]) : readFile('pmapDWMPreview.json'), - DISABLE_JUBRAIN_PMAP_V17 ? Promise.resolve([]) : readFile('pmapJuBrainV17Preview.json'), - DISABLE_JUBRAIN_PMAP_EXTRA ? Promise.resolve([]) : readFile('pmapJuBrainExtraPreview.json') -]) - .then(arrOfA => arrOfA.reduce((acc, item) => acc.concat(item), [])) - .then(iterable => { - previewMap = new Map(iterable) - previewMapKeySet = new Set(previewMap.keys()) - }) - .catch(e => { - console.error('preview file error', e) - }) - -const processFile = ({ url, ...rest }) => { - if (!url) return { ...rest } - const processedUrl = !/^http/.test(url) - ? `${HOSTNAME}/${url}` - : reconfigureFlag - ? reconfigureUrl(url) - : url - return { - ...rest, - url: processedUrl - } -} - -exports.getPreviewFile = ({ datasetName, templateSelected }) => previewMap.get(datasetName) - ? Promise.resolve( - previewMap.get(datasetName) - .filter(({ templateSpace }) => { - if (!templateSpace) return true - if (!templateSelected) return true - return templateSpace === templateSelected - }) - .map(processFile) - ) - : Promise.reject(`Preview file cannot be found!`) - -exports.getAllPreviewDSNames = () => Array.from(previewMap.keys()) -exports.hasPreview = ({ datasetName }) => previewMapKeySet.has(datasetName) \ No newline at end of file diff --git a/deploy/datasets/testData/allen2015.js b/deploy/datasets/testData/allen2015.js deleted file mode 100644 index 0220ae2a3a462ae4f5a8113e0d38627dcd9d6e7a..0000000000000000000000000000000000000000 --- a/deploy/datasets/testData/allen2015.js +++ /dev/null @@ -1,193 +0,0 @@ -module.exports = [ - { - "formats" : [], - "name" : "Neuropsin tetracycline-transactivator expression: horizontal sections (case 2877)", - "publications" : [ - { - "cite" : "Lillehaug, S., Yetman, M.J., Puchades,M.A., Checinska, M.M., Kleven, H., Jankowsky, J.L., Bjaalie, J.G., Leergaard, T.B. (2019). Brain-wide distribution of reporter expression in five transgenic tetracycline-transactivator mouse lines. Scientific Data, 6, 190028.", - "name" : "Brain-wide distribution of reporter expression in five transgenic tetracycline-transactivator mouse lines", - "doi" : "10.1038/sdata.2019.28" - }, - { - "doi" : "10.1007/s00429-015-1040-9", - "name" : "Transgene expression in the Nop-tTA driver line is not inherently restricted to the entorhinal cortex", - "cite" : "Yetman, M. J., Lillehaug, S., Bjaalie, J. G., Leergaard, T. B., & Jankowsky, J. L. (2015). Transgene expression in the Nop-tTA driver line is not inherently restricted to the entorhinal cortex. Brain Structure and Function, 221(4), 2231–2249. " - } - ], - "contributors" : [ - "Jankowsky, Joanna L.", - "Leergaard, Trygve B.", - "Bjaalie, Jan G.", - "Lillehaug, Sveinung", - "Yetman, Michael J." - ], - "project" : [ - "Transgene expression in tetracycline-transactivator driver lines" - ], - "methods" : [ - "Immunohistochemistry", - "Reporter genes", - "Brightfield microscopy", - "Reporter proteins" - ], - "activity" : [ - { - "preparation" : [ - "Ex vivo" - ], - "protocols" : [ - "Prss19", - "Kallikrein related-peptidase 8", - "Klk8-tTA", - "EC-tTA", - "tTA-EC", - "B6.Cg-Tg(Klk8-tTA)QMmay/MullMmmh", - "Neuropsin promoter", - "Atlas", - "Brain-wide", - "Tet-lacZ reporter", - "Double-transgenic", - "X-gal", - "histology", - "Reporter gene", - "Conditional model", - "Tet-off", - "Tetracycline transactivator protein", - "tTA", - "Nop-tTA", - "Nop" - ] - } - ], - "kgReference" : [ - "10.25493/AYBB-BXV" - ], - "id" : "d56b1fe14bb84987a3a2340e21652b2d", - "custodians" : [ - "Jankowsky, Joanna L." - ], - "parcellationRegion" : [ - { - "species" : [], - "name" : "Mouse Whole brain (v3 2015)", - "alias" : "Whole brain", - "fullId" : "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationregion/v1.0.0/2bdfac7a-b38c-4c55-9843-0b56cb90bb67" - } - ], - "license" : [], - "embargoStatus" : [ - "Free" - ], - "species" : [ - "Mus musculus" - ], - "licenseInfo" : [ - { - "url" : "https://creativecommons.org/licenses/by/4.0/", - "name" : "Creative Commons Attribution 4.0 International" - } - ], - "datasetDOI" : [ - { - "doi" : "10.1038/sdata.2019.28", - "cite" : "Lillehaug, S., Yetman, M.J., Puchades,M.A., Checinska, M.M., Kleven, H., Jankowsky, J.L., Bjaalie, J.G., Leergaard, T.B. (2019). Brain-wide distribution of reporter expression in five transgenic tetracycline-transactivator mouse lines. Scientific Data, 6, 190028." - }, - { - "cite" : "Yetman, M. J., Lillehaug, S., Bjaalie, J. G., Leergaard, T. B., & Jankowsky, J. L. (2015). Transgene expression in the Nop-tTA driver line is not inherently restricted to the entorhinal cortex. Brain Structure and Function, 221(4), 2231–2249. ", - "doi" : "10.1007/s00429-015-1040-9" - } - ], - "description" : "Bright-field microscopy images of serial horizontal brain sections showing neuropsin (Nop) promoter expression in a bigenic Nop-tetracycline-transactivator (tTA) mouse brain (case 2877, adult male), using a driver-reporter construct in which the Nop-tTA promoter regulates the expression of the E. coli derived LacZ reporter gene encoding β-galactosidase, which is visualized histologically using X-gal (5-Bromo-4-chloro-3-indolyl β-d-galactopyranoside) as a substrate. Methodological details are provided in Yetman et al., Brain Struct Funct 221:2231-49, 2016. Our data show that the Nop-tTA promoter mainly is expressed in the entorhinal cortex, but also in several other cortical regions.", - "referenceSpaces" : [], - "parcellationAtlas" : [ - { - "id" : "39a1384b-8413-4d27-af8d-22432225401f", - "name" : "Allen Mouse Common Coordinate Framework v3 2015", - "fullId" : "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationatlas/v1.0.0/39a1384b-8413-4d27-af8d-22432225401f" - } - ], - "fullId" : "https://nexus.humanbrainproject.org/v0/data/minds/core/dataset/v1.0.0/82a9c981-0ba0-4a5a-9bbc-a3b74c568f5b", - "files" : [] - }, - { - "formats": [], - "datasetDOI": [], - "activity": [ - { - "protocols": [], - "preparation": [ - "Ex vivo" - ] - } - ], - "referenceSpaces": [], - "methods": [ - "Patch clamp techniques", - "Voltage clamp recording", - "Single electrode recording", - "Knockin" - ], - "custodians": [ - "Cherubini, Enrico" - ], - "project": [ - "STDP" - ], - "description": "Spike-time dependent plasticity (STDP is a particular form of Hebbian type of learning which consists in bidirectional modifications of synaptic strength according to the temporal order of pre- and postsynaptic spiking (*Dan Y1, Poo MM (2006) Spike timing-dependent plasticity: from synapse to perception. Physiol Rev 86:1033-1048*). Thus, positively correlated pre- and postsynaptic spiking (pre before post) within a critical window leads to long term potentiation (LTP), whereas a negative correlation (post before pre) leads to long term depression (LTD). \nAt the neonatal stage, the hippocampal mossy fiber (MF)-CA3 is GABAergic and exhibits STDP. Our data demonstrate that, at the same age, positive pairing fails to induce STD-LTP at MF-CA3 synapses in hippocampal slices obtained from neuroligin-3 (NL3) knock-in (NL3<sup>R451C</sup> KI) and NL3 knock-out (KO) mice. Similarly, in NLR<sup>451C</sup> KI mice, negative pairing failed to cause STD-LTD. In contrast, STD-LTP and STD-LTD can be readily produced in control age-matched WT littermates. In NLR<sup>451C</sup> KI mice, the impairment in STD-LTP is maintained in adulthood when MF are glutamatergic. This set of data refers to the neonate, NLR<sup>451C</sup> KI, positive pairing condition.", - "parcellationAtlas": [ - { - "name": "Allen Mouse Common Coordinate Framework v3 2015", - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationatlas/v1.0.0/39a1384b-8413-4d27-af8d-22432225401f", - "id": "39a1384b-8413-4d27-af8d-22432225401f" - } - ], - "licenseInfo": [ - { - "name": "Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International", - "url": "https://creativecommons.org/licenses/by-nc-sa/4.0/" - } - ], - "embargoStatus": [ - "Embargoed" - ], - "license": [ - { - "name": "Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International", - "relativeUrl": "minds/core/licensetype/v1.0.0/88e71f2d-4fcc-4cb1-bc9f-cbab9ab2058b" - } - ], - "parcellationRegion": [ - { - "species": [ - { - "identifier": [ - "899694120d41aab8054900b51d369ef8", - "e07b81dd7bbdf2727f6df2f4013ed025" - ], - "name": "Mus musculus", - "@id": "https://nexus.humanbrainproject.org/v0/data/minds/core/species/v1.0.0/cfc1656c-67d1-4d2c-a17e-efd7ce0df88c" - } - ], - "name": "Mouse Hippocampal region (v3 2015)", - "alias": "Hippocampal region", - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationregion/v1.0.0/fc429031-1632-49a4-b9c6-00ab72100c85" - } - ], - "species": [ - "Mus musculus" - ], - "name": "Spike time dependent plasticity (STDP) data from neonate neuroligin-3 knock-in mice, positive pairing", - "files": [], - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/dataset/v1.0.0/88e4e64e-b053-48b3-828b-306e386621e0", - "contributors": [ - "Cherubini, Enrico", - "Sgritta, Martina", - "Marchetti, Cristina" - ], - "id": "1a6cbd0b55a13e7b8775d3417281a83f", - "kgReference": [ - "10.25493/PF1P-YSE" - ], - "publications": [] - } -] \ No newline at end of file diff --git a/deploy/datasets/testData/bigbrain.js b/deploy/datasets/testData/bigbrain.js deleted file mode 100644 index 6e5c5ad6fee360e1d8b2770e3a4c3cda98782cf1..0000000000000000000000000000000000000000 --- a/deploy/datasets/testData/bigbrain.js +++ /dev/null @@ -1,141 +0,0 @@ -module.exports = [ - { - "formats": [], - "datasetDOI": [ - { - "cite": "Schleicher, A., Amunts, K., Geyer, S., Morosan, P., & Zilles, K. (1999). Observer-Independent Method for Microstructural Parcellation of Cerebral Cortex: A Quantitative Approach to Cytoarchitectonics. NeuroImage, 9(1), 165–177. ", - "doi": "10.1006/nimg.1998.0385" - }, - { - "cite": "Spitzer, H., Kiwitz, K., Amunts, K., Harmeling, S., Dickscheid, T. (2018). Improving Cytoarchitectonic Segmentation of Human Brain Areas with Self-supervised Siamese Networks. In: Frangi A., Schnabel J., Davatzikos C., Alberola-López C., Fichtinger G. (eds) Medical Image Computing and Computer Assisted Intervention – MICCAI 2018. MICCAI 2018. Lecture Notes in Computer Science, vol 11072. Springer, Cham.", - "doi": "10.1007/978-3-030-00931-1_76" - }, - { - "cite": "Spitzer, H., Amunts, K., Harmeling, S., and Dickscheid, T. (2017). Parcellation of visual cortex on high-resolution histological brain sections using convolutional neural networks, in 2017 IEEE 14th International Symposium on Biomedical Imaging (ISBI 2017), pp. 920–923.", - "doi": "10.1109/ISBI.2017.7950666" - }, - { - "cite": "Amunts, K., Lepage, C., Borgeat, L., Mohlberg, H., Dickscheid, T., Rousseau, M. -E., Bludau, S., Bazin, P. -L., Lewis, L. B., Oros-Peusquens, A.-M., Shah, N. J., Lippert, T., Zilles, K., Evans, A. C. (2013). BigBrain: An Ultrahigh-Resolution 3D Human Brain Model. Science, 340(6139),1472-5.", - "doi": "10.1126/science.1235381" - } - ], - "activity": [ - { - "protocols": [ - "imaging" - ], - "preparation": [ - "Ex vivo" - ] - }, - { - "protocols": [ - "histology" - ], - "preparation": [ - "Ex vivo" - ] - }, - { - "protocols": [ - "brain mapping" - ], - "preparation": [ - "Ex vivo" - ] - }, - { - "protocols": [ - "analysis technique" - ], - "preparation": [ - "Ex vivo" - ] - } - ], - "referenceSpaces": [ - { - "name": "BigBrain", - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/referencespace/v1.0.0/a1655b99-82f1-420f-a3c2-fe80fd4c8588" - } - ], - "methods": [ - "magnetic resonance imaging (MRI)", - "silver staining", - "cytoarchitectonic mapping", - "Deep-Learning based cytoarchitectonic mapping" - ], - "custodians": [ - "Amunts, Katrin" - ], - "project": [ - "Ultrahigh resolution 3D maps of cytoarchitectonic areas in the Big Brain model" - ], - "description": "This dataset contains automatically created cytoarchitectonic maps of Area hOc1 (V1, 17, CalcS) in the BigBrain dataset [Amunts et al. 2013]. The mappings were created using Deep Convolutional Neural networks based on the idea presented in Spitzer et al. 2017 and Spitzer et al. 2018, which were trained on delineations on every 120th section created using the semi-automatic method presented in Schleicher et al. 1999. Mappings are available on every section. Their quality was observed by a trained neuroscientist to exclude sections with low quality results from further processing. Automatic mappings were then transformed to the 3D reconstructed BigBrain space using transformations used in Amunts et al. 2013, which were provided by Claude Lepage (McGill). Individual sections were used to assemble a 3D volume of the area, low quality results were replaced by interpolations between nearest neighboring sections. The volume was then smoothed using an 11³ median filter and largest connected components were identified to remove false positive results of the classification algorithm.\nThe dataset consists of a single HDF5 file containing the volume in RAS dimension ordering and 20 micron isotropic resolution in the dataset “volume†and affine transformation matrix in the dataset “affineâ€. An additional dataset “interpolation_info†contains a vector with an integer value for each section which indicates if a section was interpolated due to low quality results (value 2) or not (value 1).\nDue to the large size of the volume, it’s recommended to view the data online using the provided viewer link.\n", - "parcellationAtlas": [ - { - "name": "Jülich Cytoarchitechtonic Brain Atlas (human)", - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579-26", - "id": [ - "deec923ec31a82f89a9c7c76a6fefd6b", - "e2d45e028b6da0f6d9fdb9491a4de80a" - ] - } - ], - "licenseInfo": [ - { - "name": "Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International", - "url": "https://creativecommons.org/licenses/by-nc-sa/4.0/" - } - ], - "embargoStatus": [ - "Free" - ], - "license": [], - "parcellationRegion": [ - { - "species": [], - "name": "Area hOc1 (V1, 17, CalcS)", - "alias": null - } - ], - "species": [ - "Homo sapiens" - ], - "name": "Ultrahigh resolution 3D cytoarchitectonic map of Area hOc1 (V1, 17, CalcS) created by a Deep-Learning assisted workflow", - "files": [], - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/dataset/v1.0.0/696d6062-3b86-498f-9ca6-e4d67b433396", - "contributors": [ - "Dickscheid, Timo", - "Amunts, Katrin", - "Kiwitz, Kai", - "Schiffer, Christian " - ], - "id": "696d6062-3b86-498f-9ca6-e4d67b433396", - "kgReference": [ - "10.25493/DGEZ-Q93" - ], - "publications": [ - { - "name": "Observer-Independent Method for Microstructural Parcellation of Cerebral Cortex: A Quantitative Approach to Cytoarchitectonics", - "cite": "Schleicher, A., Amunts, K., Geyer, S., Morosan, P., & Zilles, K. (1999). Observer-Independent Method for Microstructural Parcellation of Cerebral Cortex: A Quantitative Approach to Cytoarchitectonics. NeuroImage, 9(1), 165–177. ", - "doi": "10.1006/nimg.1998.0385" - }, - { - "name": "Improving Cytoarchitectonic Segmentation of Human Brain Areas with Self-supervised Siamese Networks", - "cite": "Spitzer, H., Kiwitz, K., Amunts, K., Harmeling, S., Dickscheid, T. (2018). Improving Cytoarchitectonic Segmentation of Human Brain Areas with Self-supervised Siamese Networks. In: Frangi A., Schnabel J., Davatzikos C., Alberola-López C., Fichtinger G. (eds) Medical Image Computing and Computer Assisted Intervention – MICCAI 2018. MICCAI 2018. Lecture Notes in Computer Science, vol 11072. Springer, Cham.", - "doi": "10.1007/978-3-030-00931-1_76" - }, - { - "name": "Parcellation of visual cortex on high-resolution histological brain sections using convolutional neural networks", - "cite": "Spitzer, H., Amunts, K., Harmeling, S., and Dickscheid, T. (2017). Parcellation of visual cortex on high-resolution histological brain sections using convolutional neural networks, in 2017 IEEE 14th International Symposium on Biomedical Imaging (ISBI 2017), pp. 920–923.", - "doi": "10.1109/ISBI.2017.7950666" - }, - { - "name": "BigBrain: An Ultrahigh-Resolution 3D Human Brain Model", - "cite": "Amunts, K., Lepage, C., Borgeat, L., Mohlberg, H., Dickscheid, T., Rousseau, M. -E., Bludau, S., Bazin, P. -L., Lewis, L. B., Oros-Peusquens, A.-M., Shah, N. J., Lippert, T., Zilles, K., Evans, A. C. (2013). BigBrain: An Ultrahigh-Resolution 3D Human Brain Model. Science, 340(6139),1472-5.", - "doi": "10.1126/science.1235381" - } - ] - } -] \ No newline at end of file diff --git a/deploy/datasets/testData/colin27.js b/deploy/datasets/testData/colin27.js deleted file mode 100644 index 43389fe15164959058e4faace389da3113c51cdd..0000000000000000000000000000000000000000 --- a/deploy/datasets/testData/colin27.js +++ /dev/null @@ -1,113 +0,0 @@ -module.exports = [ - { - "formats": [ - "NIFTI" - ], - "datasetDOI": [ - { - "cite": "Amunts, K., Malikovic, A., Mohlberg, H., Schormann, T., & Zilles, K. (2000). Brodmann’s Areas 17 and 18 Brought into Stereotaxic Space—Where and How Variable? NeuroImage, 11(1), 66–84. ", - "doi": "10.1006/nimg.1999.0516" - } - ], - "activity": [ - { - "protocols": [ - "histology" - ], - "preparation": [ - "Ex vivo" - ] - }, - { - "protocols": [ - "imaging" - ], - "preparation": [ - "Ex vivo" - ] - }, - { - "protocols": [ - "brain mapping" - ], - "preparation": [ - "Ex vivo" - ] - } - ], - "referenceSpaces": [ - { - "name": null, - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/referencespace/v1.0.0/dafcffc5-4826-4bf1-8ff6-46b8a31ff8e2" - }, - { - "name": "MNI Colin 27", - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/referencespace/v1.0.0/7f39f7be-445b-47c0-9791-e971c0b6d992" - } - ], - "methods": [ - "silver staining", - "magnetic resonance imaging (MRI)", - "probability mapping", - "cytoarchitectonic mapping" - ], - "custodians": [ - "Amunts, Katrin" - ], - "project": [ - "JuBrain: cytoarchitectonic probabilistic maps of the human brain" - ], - "description": "This dataset contains the distinct architectonic Area hOc1 (V1, 17, CalcS) in the individual, single subject template of the MNI Colin 27 as well as the MNI ICBM 152 2009c nonlinear asymmetric reference space. As part of the JuBrain cytoarchitectonic atlas, the area was identified using cytoarchitectonic analysis on cell-body-stained histological sections of 10 human postmortem brains obtained from the body donor program of the University of Düsseldorf. The results of the cytoarchitectonic analysis were then mapped to both reference spaces, where each voxel was assigned the probability to belong to Area hOc1 (V1, 17, CalcS). The probability map of Area hOc1 (V1, 17, CalcS) are provided in the NifTi format for each brain reference space and hemisphere. The JuBrain atlas relies on a modular, flexible and adaptive framework containing workflows to create the probabilistic brain maps for these structures. Note that methodological improvements and integration of new brain structures may lead to small deviations in earlier released datasets.", - "parcellationAtlas": [ - { - "name": "Jülich Cytoarchitechtonic Brain Atlas (human)", - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579-26", - "id": [ - "deec923ec31a82f89a9c7c76a6fefd6b", - "e2d45e028b6da0f6d9fdb9491a4de80a" - ] - } - ], - "licenseInfo": [ - { - "name": "Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International", - "url": "https://creativecommons.org/licenses/by-nc-sa/4.0/" - } - ], - "embargoStatus": [ - "Free" - ], - "license": [], - "parcellationRegion": [ - { - "species": [], - "name": "Area hOc1 (V1, 17, CalcS)", - "alias": null - } - ], - "species": [ - "Homo sapiens" - ], - "name": "Probabilistic cytoarchitectonic map of Area hOc1 (V1, 17, CalcS) (v2.4)", - "files": [], - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/dataset/v1.0.0/5c669b77-c981-424a-858d-fe9f527dbc07", - "contributors": [ - "Zilles, Karl", - "Schormann, Thorsten", - "Mohlberg, Hartmut", - "Malikovic, Aleksandar", - "Amunts, Katrin" - ], - "id": "5c669b77-c981-424a-858d-fe9f527dbc07", - "kgReference": [ - "10.25493/MXJ6-6DH" - ], - "publications": [ - { - "name": "Brodmann's Areas 17 and 18 Brought into Stereotaxic Space—Where and How Variable?", - "cite": "Amunts, K., Malikovic, A., Mohlberg, H., Schormann, T., & Zilles, K. 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(2000). Brodmann’s Areas 17 and 18 Brought into Stereotaxic Space—Where and How Variable? NeuroImage, 11(1), 66–84. ", - "doi": "10.1006/nimg.1999.0516" - } - ], - "preview": true - } -] \ No newline at end of file diff --git a/deploy/datasets/testData/humanReceptor.js b/deploy/datasets/testData/humanReceptor.js deleted file mode 100644 index 6a0c2c2f5c1906348d2d577d0522a96fcd25c4a1..0000000000000000000000000000000000000000 --- a/deploy/datasets/testData/humanReceptor.js +++ /dev/null @@ -1,115 +0,0 @@ -module.exports = [ - { - "formats": [ - "xlsx, tif, txt" - ], - "datasetDOI": [ - { - "cite": "Eickhoff, S. B., Schleicher, A., Scheperjans, F., Palomero-Gallagher, N., & Zilles, K. (2007). Analysis of neurotransmitter receptor distribution patterns in the cerebral cortex. NeuroImage, 34(4), 1317–1330. ", - "doi": "10.1016/j.neuroimage.2006.11.016" - }, - { - "cite": "Zilles, K., Bacha-Trams, M., Palomero-Gallagher, N., Amunts, K., & Friederici, A. D. (2015). Common molecular basis of the sentence comprehension network revealed by neurotransmitter receptor fingerprints. Cortex, 63, 79–89. ", - "doi": "10.1016/j.cortex.2014.07.007" - } - ], - "activity": [ - { - "protocols": [ - "brain mapping" - ], - "preparation": [ - "Ex vivo" - ] - }, - { - "protocols": [ - "histology" - ], - "preparation": [ - "Ex vivo" - ] - } - ], - "referenceSpaces": [], - "methods": [ - "receptor autoradiography plot", - "receptor density fingerprint analysis", - "receptor density profile analysis", - "autoradiography with [³H] SCH23390", - "autoradiography with [³H] ketanserin", - "autoradiography with [³H] 8-OH-DPAT", - "autoradiography with [³H] UK-14,304", - "autoradiography with [³H] epibatidine", - "autoradiography with [³H] 4-DAMP", - "autoradiography with [³H] oxotremorine-M", - "autoradiography with [³H] flumazenil", - "autoradiography with [³H] CGP 54626", - "autoradiography with [³H] prazosin", - "autoradiography with [³H] muscimol", - "autoradiography with [³H]LY 341 495", - "autoradiography with [³H] pirenzepine", - "autoradiography with [³H] MK-801", - "autoradiography with [³H] kainate", - "autoradiography with [³H] AMPA" - ], - "custodians": [ - "Palomero-Gallagher, Nicola", - "Zilles, Karl" - ], - "project": [ - "Quantitative Receptor data" - ], - "description": "This dataset contains the densities (in fmol/mg protein) of 16 receptors for classical neurotransmitters in Area hOc1 using quantitative in vitro autoradiography. The receptor density measurements can be provided in three ways: (fp) as density fingerprints (average across samples; mean density and standard deviation for each of the 16 receptors), (pr) as laminar density profiles (exemplary data from one sample; average course of the density from the pial surface to the border between layer VI and the white matter for each receptor), and (ar) as color-coded autoradiographs (exemplary data from one sample; laminar density distribution patterns for each receptor labeling). \nThis dataset contains the following receptor density measurements based on the labeling of these receptor binding sites: \n\nAMPA (glutamate; labelled with [³H]AMPA): fp, pr, ar\n\nkainate (glutamate; [³H]kainate): fp, pr, ar\n\nNMDA (glutamate; [³H]MK-801): fp, pr, ar\n\nmGluR2/3 (glutamate; [³H] LY 341 495): pr, ar\n\nGABA<sub>A</sub> (GABA; [³H]muscimol): fp, pr, ar\n\nGABA<sub>B</sub> (GABA; [³H] CGP54626): fp, pr, ar\n\nGABA<sub>A</sub> associated benzodiazepine binding sites (BZ; [³H]flumazenil): fp, pr, ar\n\nmuscarinic Mâ‚ (acetylcholine; [³H]pirenzepine): fp, pr, ar\n\nmuscarinic Mâ‚‚ (acetylcholine; [³H]oxotremorine-M): fp, pr, ar\n\nmuscarinic M₃ (acetylcholine; [³H]4-DAMP): fp, pr, ar\n\nnicotinic α₄β₂ (acetylcholine; [³H]epibatidine): fp, pr, ar\n\nα₠(noradrenalin; [³H]prazosin): fp, pr, ar\n\nα₂ (noradrenalin; [³H]UK-14,304): fp, pr, ar\n\n5-HTâ‚<sub>A</sub> (serotonin; [³H]8-OH-DPAT): fp, pr, ar\n\n5-HTâ‚‚ (serotonin; [³H]ketanserin): fp, pr, ar\n\nDâ‚ (dopamine; [³H]SCH23390): fp, pr, ar\n\nWhich sample was used for which receptor density measurement is stated in metadata files accompanying the main data repository. For methodological details, see Zilles et al. (2002), and in Palomero-Gallagher and Zilles (2018).\n\nZilles, K. et al. (2002). Quantitative analysis of cyto- and receptorarchitecture of the human brain, pp. 573-602. In: Brain Mapping: The Methods, 2nd edition (A.W. Toga and J.C. Mazziotta, eds.). San Diego, Academic Press.\n\nPalomero-Gallagher N, Zilles K. (2018) Cyto- and receptorarchitectonic mapping of the human brain. In: Handbook of Clinical Neurology 150: 355-387", - "parcellationAtlas": [], - "licenseInfo": [ - { - "name": "Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International", - "url": "https://creativecommons.org/licenses/by-nc-sa/4.0/" - } - ], - "embargoStatus": [ - "Free" - ], - "license": [], - "parcellationRegion": [ - { - "species": [], - "name": "Area hOc1", - "alias": null - } - ], - "species": [ - "Homo sapiens" - ], - "name": "Density measurements of different receptors for Area hOc1", - "files": [], - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/dataset/v1.0.0/e715e1f7-2079-45c4-a67f-f76b102acfce", - "contributors": [ - "Scheperjans, Filip", - "Schleicher, Axel", - "Eickhoff, Simon B.", - "Friederici, Angela D.", - "Amunts, Katrin", - "Palomero-Gallagher, Nicola", - "Bacha-Trams, Maraike", - "Zilles, Karl" - ], - "id": "0616d1e97b8be75de526bc265d9af540", - "kgReference": [ - "10.25493/P8SD-JMH" - ], - "publications": [ - { - "name": "Analysis of neurotransmitter receptor distribution patterns in the cerebral cortex", - "cite": "Eickhoff, S. B., Schleicher, A., Scheperjans, F., Palomero-Gallagher, N., & Zilles, K. (2007). Analysis of neurotransmitter receptor distribution patterns in the cerebral cortex. NeuroImage, 34(4), 1317–1330. ", - "doi": "10.1016/j.neuroimage.2006.11.016" - }, - { - "name": "Common molecular basis of the sentence comprehension network revealed by neurotransmitter receptor fingerprints", - "cite": "Zilles, K., Bacha-Trams, M., Palomero-Gallagher, N., Amunts, K., & Friederici, A. D. (2015). Common molecular basis of the sentence comprehension network revealed by neurotransmitter receptor fingerprints. Cortex, 63, 79–89. ", - "doi": "10.1016/j.cortex.2014.07.007" - } - ] - } -] \ No newline at end of file diff --git a/deploy/datasets/testData/ibcData.md b/deploy/datasets/testData/ibcData.md deleted file mode 100644 index 877fcd0a2b3fc57245e62831d5cbf6b9c3858616..0000000000000000000000000000000000000000 --- a/deploy/datasets/testData/ibcData.md +++ /dev/null @@ -1,24 +0,0 @@ -# Individual Brain Charting fMRI datasets with strong activation in Area hIP1 (IPS) of the left hemisphere - -Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain. -Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f - -The following measurements show a particularly strong activation in Area hIP1 (IPS) of the left hemisphere: - -| Subject ID | Session ID | Task | -| :-: | :-: | :-: | -| sub-05 | ses-04 | task-archi_emotional_dir-ap_face_trusty| -| sub-05 | ses-04 | dir-ap_face_trusty| -| sub-07 | ses-11 | sn_before-after_event| -| sub-07 | ses-04 | dir-ap_reading-checkerboard| -| sub-07 | ses-04 | task-archi_standard_dir-ap_reading-checkerboard| -| sub-06 | ses-01 | task-hcp_gambling_dir-ap_punishment-reward| -| sub-06 | ses-01 | dir-ap_punishment-reward| -| sub-07 | ses-12 | task-mtt_we_dir-ap_run-03_we_before-after_event| -| sub-07 | ses-12 | dir-ap_run-03_we_before-after_event| -| sub-07 | ses-12 | we_before-after_event| - - -The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here. diff --git a/deploy/datasets/testData/ibcDataExpected.js b/deploy/datasets/testData/ibcDataExpected.js deleted file mode 100644 index 1837c2c47046e983c6b352955ab9900f05e8616d..0000000000000000000000000000000000000000 --- a/deploy/datasets/testData/ibcDataExpected.js +++ /dev/null @@ -1,58 +0,0 @@ -module.exports = { - name: 'Individual Brain Charting fMRI datasets with strong activation in Area hIP1 (IPS) of the left hemisphere\n\n', - kgReference: ['https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f\n\n'], - description: 'The Individual Brain Charting dataset is a high spatial-resolution, multi-task, functional Magnetic Resonance Imaging dataset, intended to support the investigation on the functional principles governing cognition in the human brain.\n' + - 'Read more in the Knowledge Graph: https://kg.ebrains.eu/search/instances/Dataset/a1c940cc-4777-417e-9326-dd6584d6c71f\n' + - '\n' + - 'Following are the 10 measurements with the strongest activation in Area hIP1 (IPS) of the left hemisphere:\n' + - '\n' + - '| Subject ID | Session ID | Task |\n' + - '| --- | --- | --- |\n' + - '| sub-05 | ses-04 | task-archi_emotional_dir-ap_face_trusty|\n' + - '| sub-05 | ses-04 | dir-ap_face_trusty|\n' + - '| sub-07 | ses-11 | sn_before-after_event|\n' + - '| sub-07 | ses-04 | dir-ap_reading-checkerboard|\n' + - '| sub-07 | ses-04 | task-archi_standard_dir-ap_reading-checkerboard|\n' + - '| sub-06 | ses-01 | task-hcp_gambling_dir-ap_punishment-reward|\n' + - '| sub-06 | ses-01 | dir-ap_punishment-reward|\n' + - '| sub-07 | ses-12 | task-mtt_we_dir-ap_run-03_we_before-after_event|\n' + - '| sub-07 | ses-12 | dir-ap_run-03_we_before-after_event|\n' + - '| sub-07 | ses-12 | we_before-after_event|\n' + - '\n' + - '\n' + - 'The Individual Brain Charting Dataset is currently under GDPR review. Once the review is completed, we will provide direct links to these files here.', - methods: ['functional magnetic resonance imaging (fMRI)'], - species: ['Homo sapiens'], - fullId: `https://ibc/ibc_schema/left_AIPS_IP1.md`, - kgId: 'left_AIPS_IP1.md', - kgSchema: '//ibc/ibc_schema', - referenceSpaces: [ - { - "name": null, - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/referencespace/v1.0.0/dafcffc5-4826-4bf1-8ff6-46b8a31ff8e2" - }, - { - "name": "MNI Colin 27", - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/referencespace/v1.0.0/7f39f7be-445b-47c0-9791-e971c0b6d992" - } - ], - parcellationAtlas: [ - { - name: 'Jülich Cytoarchitechtonic Brain Atlas (human)', - fullId: - 'https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579' - }], - parcellationRegion: [ - { - species: [], - name: 'Area hIP1 (IPS)', - alias: null, - fullId: 'https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationregion/v1.0.0/7722c71f-fe84-4deb-8f6b-98e2aecf2e31' - } - ], - embargoStatus: [{ - '@id': 'https://nexus.humanbrainproject.org/v0/data/minds/core/embargostatus/v1.0.0/1d726b76-b176-47ed-96f0-b4f2e17d5f19' - }] -} - - diff --git a/deploy/datasets/testData/mni152JuBrain.js b/deploy/datasets/testData/mni152JuBrain.js deleted file mode 100644 index 4cfe826de11c69cc3d16018564f11f4a53c43601..0000000000000000000000000000000000000000 --- a/deploy/datasets/testData/mni152JuBrain.js +++ /dev/null @@ -1,337 +0,0 @@ -module.exports = [ - { - "formats": [ - "NIFTI" - ], - "datasetDOI": [ - { - "cite": "Amunts, K., Malikovic, A., Mohlberg, H., Schormann, T., & Zilles, K. (2000). Brodmann’s Areas 17 and 18 Brought into Stereotaxic Space—Where and How Variable? NeuroImage, 11(1), 66–84. ", - "doi": "10.1006/nimg.1999.0516" - } - ], - "activity": [ - { - "protocols": [ - "histology" - ], - "preparation": [ - "Ex vivo" - ] - }, - { - "protocols": [ - "imaging" - ], - "preparation": [ - "Ex vivo" - ] - }, - { - "protocols": [ - "brain mapping" - ], - "preparation": [ - "Ex vivo" - ] - } - ], - "referenceSpaces": [ - { - "name": null, - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/referencespace/v1.0.0/dafcffc5-4826-4bf1-8ff6-46b8a31ff8e2" - }, - { - "name": "MNI Colin 27", - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/referencespace/v1.0.0/7f39f7be-445b-47c0-9791-e971c0b6d992" - } - ], - "methods": [ - "silver staining", - "magnetic resonance imaging (MRI)", - "probability mapping", - "cytoarchitectonic mapping" - ], - "custodians": [ - "Amunts, Katrin" - ], - "project": [ - "JuBrain: cytoarchitectonic probabilistic maps of the human brain" - ], - "description": "This dataset contains the distinct architectonic Area hOc1 (V1, 17, CalcS) in the individual, single subject template of the MNI Colin 27 as well as the MNI ICBM 152 2009c nonlinear asymmetric reference space. As part of the JuBrain cytoarchitectonic atlas, the area was identified using cytoarchitectonic analysis on cell-body-stained histological sections of 10 human postmortem brains obtained from the body donor program of the University of Düsseldorf. The results of the cytoarchitectonic analysis were then mapped to both reference spaces, where each voxel was assigned the probability to belong to Area hOc1 (V1, 17, CalcS). The probability map of Area hOc1 (V1, 17, CalcS) are provided in the NifTi format for each brain reference space and hemisphere. The JuBrain atlas relies on a modular, flexible and adaptive framework containing workflows to create the probabilistic brain maps for these structures. Note that methodological improvements and integration of new brain structures may lead to small deviations in earlier released datasets.", - "parcellationAtlas": [ - { - "name": "Jülich Cytoarchitechtonic Brain Atlas (human)", - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579", - "id": [ - "deec923ec31a82f89a9c7c76a6fefd6b", - "e2d45e028b6da0f6d9fdb9491a4de80a" - ] - } - ], - "licenseInfo": [ - { - "name": "Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International", - "url": "https://creativecommons.org/licenses/by-nc-sa/4.0/" - } - ], - "embargoStatus": [ - "Free" - ], - "license": [], - "parcellationRegion": [ - { - "species": [], - "name": "Area hOc1 (V1, 17, CalcS)", - "alias": null, - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationregion/v1.0.0/5151ab8f-d8cb-4e67-a449-afe2a41fb007" - } - ], - "species": [ - "Homo sapiens" - ], - "name": "Probabilistic cytoarchitectonic map of Area hOc1 (V1, 17, CalcS) (v2.4)", - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/dataset/v1.0.0/5c669b77-c981-424a-858d-fe9f527dbc07", - "contributors": [ - "Zilles, Karl", - "Schormann, Thorsten", - "Mohlberg, Hartmut", - "Malikovic, Aleksandar", - "Amunts, Katrin" - ], - "id": "5c669b77-c981-424a-858d-fe9f527dbc07", - "kgReference": [ - "10.25493/MXJ6-6DH" - ], - "publications": [ - { - "name": "Brodmann's Areas 17 and 18 Brought into Stereotaxic Space—Where and How Variable?", - "cite": "Amunts, K., Malikovic, A., Mohlberg, H., Schormann, T., & Zilles, K. (2000). Brodmann’s Areas 17 and 18 Brought into Stereotaxic Space—Where and How Variable? NeuroImage, 11(1), 66–84. ", - "doi": "10.1006/nimg.1999.0516" - } - ] - },{ - "formats": [ - "xlsx, tif, txt" - ], - "datasetDOI": [ - { - "cite": "Eickhoff, S. B., Schleicher, A., Scheperjans, F., Palomero-Gallagher, N., & Zilles, K. (2007). Analysis of neurotransmitter receptor distribution patterns in the cerebral cortex. NeuroImage, 34(4), 1317–1330. ", - "doi": "10.1016/j.neuroimage.2006.11.016" - }, - { - "cite": "Zilles, K., Bacha-Trams, M., Palomero-Gallagher, N., Amunts, K., & Friederici, A. D. (2015). Common molecular basis of the sentence comprehension network revealed by neurotransmitter receptor fingerprints. Cortex, 63, 79–89. ", - "doi": "10.1016/j.cortex.2014.07.007" - } - ], - "activity": [ - { - "protocols": [ - "brain mapping" - ], - "preparation": [ - "Ex vivo" - ] - }, - { - "protocols": [ - "histology" - ], - "preparation": [ - "Ex vivo" - ] - } - ], - "referenceSpaces": [], - "methods": [ - "receptor autoradiography plot", - "receptor density fingerprint analysis", - "receptor density profile analysis", - "autoradiography with [³H] SCH23390", - "autoradiography with [³H] ketanserin", - "autoradiography with [³H] 8-OH-DPAT", - "autoradiography with [³H] UK-14,304", - "autoradiography with [³H] epibatidine", - "autoradiography with [³H] 4-DAMP", - "autoradiography with [³H] oxotremorine-M", - "autoradiography with [³H] flumazenil", - "autoradiography with [³H] CGP 54626", - "autoradiography with [³H] prazosin", - "autoradiography with [³H] muscimol", - "autoradiography with [³H]LY 341 495", - "autoradiography with [³H] pirenzepine", - "autoradiography with [³H] MK-801", - "autoradiography with [³H] kainate", - "autoradiography with [³H] AMPA" - ], - "custodians": [ - "Palomero-Gallagher, Nicola", - "Zilles, Karl" - ], - "project": [ - "Quantitative Receptor data" - ], - "description": "This dataset contains the densities (in fmol/mg protein) of 16 receptors for classical neurotransmitters in Area hOc1 using quantitative in vitro autoradiography. The receptor density measurements can be provided in three ways: (fp) as density fingerprints (average across samples; mean density and standard deviation for each of the 16 receptors), (pr) as laminar density profiles (exemplary data from one sample; average course of the density from the pial surface to the border between layer VI and the white matter for each receptor), and (ar) as color-coded autoradiographs (exemplary data from one sample; laminar density distribution patterns for each receptor labeling). \nThis dataset contains the following receptor density measurements based on the labeling of these receptor binding sites: \n\nAMPA (glutamate; labelled with [³H]AMPA): fp, pr, ar\n\nkainate (glutamate; [³H]kainate): fp, pr, ar\n\nNMDA (glutamate; [³H]MK-801): fp, pr, ar\n\nmGluR2/3 (glutamate; [³H] LY 341 495): pr, ar\n\nGABA<sub>A</sub> (GABA; [³H]muscimol): fp, pr, ar\n\nGABA<sub>B</sub> (GABA; [³H] CGP54626): fp, pr, ar\n\nGABA<sub>A</sub> associated benzodiazepine binding sites (BZ; [³H]flumazenil): fp, pr, ar\n\nmuscarinic Mâ‚ (acetylcholine; [³H]pirenzepine): fp, pr, ar\n\nmuscarinic Mâ‚‚ (acetylcholine; [³H]oxotremorine-M): fp, pr, ar\n\nmuscarinic M₃ (acetylcholine; [³H]4-DAMP): fp, pr, ar\n\nnicotinic α₄β₂ (acetylcholine; [³H]epibatidine): fp, pr, ar\n\nα₠(noradrenalin; [³H]prazosin): fp, pr, ar\n\nα₂ (noradrenalin; [³H]UK-14,304): fp, pr, ar\n\n5-HTâ‚<sub>A</sub> (serotonin; [³H]8-OH-DPAT): fp, pr, ar\n\n5-HTâ‚‚ (serotonin; [³H]ketanserin): fp, pr, ar\n\nDâ‚ (dopamine; [³H]SCH23390): fp, pr, ar\n\nWhich sample was used for which receptor density measurement is stated in metadata files accompanying the main data repository. For methodological details, see Zilles et al. (2002), and in Palomero-Gallagher and Zilles (2018).\n\nZilles, K. et al. (2002). Quantitative analysis of cyto- and receptorarchitecture of the human brain, pp. 573-602. In: Brain Mapping: The Methods, 2nd edition (A.W. Toga and J.C. Mazziotta, eds.). San Diego, Academic Press.\n\nPalomero-Gallagher N, Zilles K. (2018) Cyto- and receptorarchitectonic mapping of the human brain. In: Handbook of Clinical Neurology 150: 355-387", - "parcellationAtlas": [], - "licenseInfo": [ - { - "name": "Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International", - "url": "https://creativecommons.org/licenses/by-nc-sa/4.0/" - } - ], - "embargoStatus": [ - "Free" - ], - "license": [], - "parcellationRegion": [ - { - "species": [], - "name": "Area hOc1 (V1, 17, CalcS)", - "alias": null, - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationregion/v1.0.0/5151ab8f-d8cb-4e67-a449-afe2a41fb007" - } - ], - "species": [ - "Homo sapiens" - ], - "name": "Density measurements of different receptors for Area hOc1", - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/dataset/v1.0.0/e715e1f7-2079-45c4-a67f-f76b102acfce", - "contributors": [ - "Scheperjans, Filip", - "Schleicher, Axel", - "Eickhoff, Simon B.", - "Friederici, Angela D.", - "Amunts, Katrin", - "Palomero-Gallagher, Nicola", - "Bacha-Trams, Maraike", - "Zilles, Karl" - ], - "id": "0616d1e97b8be75de526bc265d9af540", - "kgReference": [ - "10.25493/P8SD-JMH" - ], - "publications": [ - { - "name": "Analysis of neurotransmitter receptor distribution patterns in the cerebral cortex", - "cite": "Eickhoff, S. B., Schleicher, A., Scheperjans, F., Palomero-Gallagher, N., & Zilles, K. (2007). Analysis of neurotransmitter receptor distribution patterns in the cerebral cortex. NeuroImage, 34(4), 1317–1330. ", - "doi": "10.1016/j.neuroimage.2006.11.016" - }, - { - "name": "Common molecular basis of the sentence comprehension network revealed by neurotransmitter receptor fingerprints", - "cite": "Zilles, K., Bacha-Trams, M., Palomero-Gallagher, N., Amunts, K., & Friederici, A. D. (2015). Common molecular basis of the sentence comprehension network revealed by neurotransmitter receptor fingerprints. Cortex, 63, 79–89. ", - "doi": "10.1016/j.cortex.2014.07.007" - } - ] - },{ - "formats": [ - "xlsx, tif, txt" - ], - "datasetDOI": [ - { - "cite": "Amunts, K., Lenzen, M., Friederici, A. D., Schleicher, A., Morosan, P., Palomero-Gallagher, N., & Zilles, K. (2010). Broca’s Region: Novel Organizational Principles and Multiple Receptor Mapping. PLoS Biology, 8(9), e1000489. ", - "doi": "10.1371/journal.pbio.1000489" - }, - { - "cite": "Zilles, K., Bacha-Trams, M., Palomero-Gallagher, N., Amunts, K., & Friederici, A. D. (2015). Common molecular basis of the sentence comprehension network revealed by neurotransmitter receptor fingerprints. Cortex, 63, 79–89. ", - "doi": "10.1016/j.cortex.2014.07.007" - } - ], - "activity": [ - { - "protocols": [ - "brain mapping" - ], - "preparation": [ - "Ex vivo" - ] - }, - { - "protocols": [ - "histology" - ], - "preparation": [ - "Ex vivo" - ] - } - ], - "referenceSpaces": [], - "methods": [ - "receptor autoradiography plot", - "receptor density fingerprint analysis", - "receptor density profile analysis", - "autoradiography with [³H] SCH23390", - "autoradiography with [³H] ketanserin", - "autoradiography with [³H] 8-OH-DPAT", - "autoradiography with [³H] UK-14,304", - "autoradiography with [³H] epibatidine", - "autoradiography with [³H] 4-DAMP", - "autoradiography with [³H] oxotremorine-M", - "autoradiography with [³H] flumazenil", - "autoradiography with [³H] CGP 54626", - "autoradiography with [³H] prazosin", - "autoradiography with [³H] muscimol", - "autoradiography with [³H]LY 341 495", - "autoradiography with [³H] pirenzepine", - "autoradiography with [³H] MK-801", - "autoradiography with [³H] kainate", - "autoradiography with [³H] AMPA" - ], - "custodians": [ - "Palomero-Gallagher, Nicola", - "Zilles, Karl" - ], - "project": [ - "Quantitative Receptor data" - ], - "description": "This dataset contains the densities (in fmol/mg protein) of 16 receptors for classical neurotransmitters in Area 44d using quantitative in vitro autoradiography. The receptor density measurements can be provided in three ways: (fp) as density fingerprints (average across samples; mean density and standard deviation for each of the 16 receptors), (pr) as laminar density profiles (exemplary data from one sample; average course of the density from the pial surface to the border between layer VI and the white matter for each receptor), and (ar) as color-coded autoradiographs (exemplary data from one sample; laminar density distribution patterns for each receptor labeling). \nThis dataset contains the following receptor density measurements based on the labeling of these receptor binding sites: \n\nAMPA (glutamate; labelled with [³H]AMPA): fp, pr, ar\n\nkainate (glutamate; [³H]kainate): fp, pr, ar\n\nNMDA (glutamate; [³H]MK-801): fp, pr, ar\n\nmGluR2/3 (glutamate; [³H] LY 341 495): pr, ar\n\nGABA<sub>A</sub> (GABA; [³H]muscimol): fp, pr, ar\n\nGABA<sub>B</sub> (GABA; [³H] CGP54626): fp, pr, ar\n\nGABA<sub>A</sub> associated benzodiazepine binding sites (BZ; [³H]flumazenil): fp, pr, ar\n\nmuscarinic Mâ‚ (acetylcholine; [³H]pirenzepine): fp, pr, ar\n\nmuscarinic Mâ‚‚ (acetylcholine; [³H]oxotremorine-M): fp, pr, ar\n\nmuscarinic M₃ (acetylcholine; [³H]4-DAMP): fp, pr, ar\n\nnicotinic α₄β₂ (acetylcholine; [³H]epibatidine): fp, pr, ar\n\nα₠(noradrenalin; [³H]prazosin): fp, pr, ar\n\nα₂ (noradrenalin; [³H]UK-14,304): fp, pr, ar\n\n5-HTâ‚<sub>A</sub> (serotonin; [³H]8-OH-DPAT): fp, pr, ar\n\n5-HTâ‚‚ (serotonin; [³H]ketanserin): fp, pr, ar\n\nDâ‚ (dopamine; [³H]SCH23390): fp, pr, ar\n\nWhich sample was used for which receptor density measurement is stated in metadata files accompanying the main data repository. For methodological details, see Zilles et al. (2002), and in Palomero-Gallagher and Zilles (2018).\n\nZilles, K. et al. (2002). Quantitative analysis of cyto- and receptorarchitecture of the human brain, pp. 573-602. In: Brain Mapping: The Methods, 2nd edition (A.W. Toga and J.C. Mazziotta, eds.). San Diego, Academic Press.\n\nPalomero-Gallagher N, Zilles K. (2018) Cyto- and receptorarchitectonic mapping of the human brain. In: Handbook of Clinical Neurology 150: 355-387", - "parcellationAtlas": [], - "licenseInfo": [ - { - "name": "Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International", - "url": "https://creativecommons.org/licenses/by-nc-sa/4.0/" - } - ], - "embargoStatus": [ - "Free" - ], - "license": [], - "parcellationRegion": [ - { - "species": [], - "name": "Area 44 (IFG)", - "alias": null, - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationregion/v1.0.0/8a6be82c-5947-4fff-8348-cf9bf73e4f40" - } - ], - "species": [ - "Homo sapiens" - ], - "name": "Density measurements of different receptors for Area 44d", - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/dataset/v1.0.0/cb875c0d-97f4-4dbc-a9ce-472d8ba58c99", - "contributors": [ - "Morosan, Patricia", - "Schleicher, Axel", - "Lenzen, Marianne", - "Friederici, Angela D.", - "Amunts, Katrin", - "Palomero-Gallagher, Nicola", - "Bacha-Trams, Maraike", - "Zilles, Karl" - ], - "id": "31397abd7aebcf13bf3b1d5eb2e2d400", - "kgReference": [ - "10.25493/YQCR-1DQ" - ], - "publications": [ - { - "name": "Broca's Region: Novel Organizational Principles and Multiple Receptor Mapping", - "cite": "Amunts, K., Lenzen, M., Friederici, A. D., Schleicher, A., Morosan, P., Palomero-Gallagher, N., & Zilles, K. (2010). Broca’s Region: Novel Organizational Principles and Multiple Receptor Mapping. PLoS Biology, 8(9), e1000489. ", - "doi": "10.1371/journal.pbio.1000489" - }, - { - "name": "Common molecular basis of the sentence comprehension network revealed by neurotransmitter receptor fingerprints", - "cite": "Zilles, K., Bacha-Trams, M., Palomero-Gallagher, N., Amunts, K., & Friederici, A. D. (2015). Common molecular basis of the sentence comprehension network revealed by neurotransmitter receptor fingerprints. Cortex, 63, 79–89. ", - "doi": "10.1016/j.cortex.2014.07.007" - } - ] - } -] \ No newline at end of file diff --git a/deploy/datasets/testData/waxholmv2.js b/deploy/datasets/testData/waxholmv2.js deleted file mode 100644 index 91c198d28a131a55de5a44e5b4c2b1ca7ec888b7..0000000000000000000000000000000000000000 --- a/deploy/datasets/testData/waxholmv2.js +++ /dev/null @@ -1,114 +0,0 @@ -module.exports = [ - { - "formats": [], - "datasetDOI": [ - { - "cite": "Holmseth, S., Scott, H. A., Real, K., Lehre, K. P., Leergaard, T. B., Bjaalie, J. G., & Danbolt, N. C. (2009). The concentrations and distributions of three C-terminal variants of the GLT1 (EAAT2; slc1a2) glutamate transporter protein in rat brain tissue suggest differential regulation. Neuroscience, 162(4), 1055–1071. ", - "doi": "10.1016/j.neuroscience.2009.03.048" - } - ], - "activity": [ - { - "protocols": [ - "Immunohistochemistry", - "Atlas", - "Brain-wide", - "Synaptic transmission", - "Neurtransmitter transport", - "Glutamate uptake", - "GLT1" - ], - "preparation": [ - "Ex vivo" - ] - } - ], - "referenceSpaces": [], - "methods": [ - "Immunohistochemistry" - ], - "custodians": [ - "Danbolt, Niels C." - ], - "project": [ - "Rodent brain neurotransporter atlas: GLT1" - ], - "description": "Glutamate is the major excitatory transmitter in the central nervous system (Danbolt, Prog. Neurobiol. 65:1-105, 2001). It is inactivated by cellular uptake, mostly catalyzed by the glutamate transporters GLT1 (slc1a2, excitatory amino acid transporter [EAAT2]) subtype expressed at high levels in brain astrocytes and at lower levels in neurons. Three C-terminal variants of EAAT2 exist: GLT1a (Pines et al., Nature 360:464-467, 1992), GLT1b (Utsunomiya-Tate et al., FEBS Lett 416:312-326,1997), and GLT1c (Rauen et al., Neurochem. Int. 45:1095-1106, 2004). This dataset is brain-wide collection of microscopic images showing the brain-wide distribution of GLT1 in the mouse and rat brain, visualized by immunohistochemistry using antibodies against GLT1a and GLT1b. To facilitate identification of anatomical location adjacent section were stained to reveal cyto- and myeloarchitecture.", - "parcellationAtlas": [ - { - "name": "Allen Mouse Common Coordinate Framework v3 2015", - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationatlas/v1.0.0/39a1384b-8413-4d27-af8d-22432225401f", - "id": "39a1384b-8413-4d27-af8d-22432225401f" - }, - { - "name": "Waxholm Space rat brain atlas v2", - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationatlas/v1.0.0/2449a7f0-6dd0-4b5a-8f1e-aec0db03679d", - "id": "2449a7f0-6dd0-4b5a-8f1e-aec0db03679d" - } - ], - "licenseInfo": [ - { - "name": "Creative Commons Attribution-ShareAlike 4.0 International", - "url": "https://creativecommons.org/licenses/by-sa/4.0" - } - ], - "embargoStatus": [ - "Free" - ], - "license": [ - { - "name": "Creative Commons Attribution-ShareAlike 4.0 International", - "relativeUrl": "minds/core/licensetype/v1.0.0/78a3bfb2-f4b9-40f0-869c-34b5e48a45bd" - } - ], - "parcellationRegion": [ - { - "species": [], - "name": "Mouse Whole brain (v3 2015)", - "alias": "Whole brain", - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationregion/v1.0.0/2bdfac7a-b38c-4c55-9843-0b56cb90bb67" - }, - { - "species": [ - { - "identifier": [ - "e9a384ea8a4edf817710b6edef5f2940", - "5401fdb1d638c2bc5b68241560cddac0" - ], - "name": "Rattus norvegicus", - "@id": "https://nexus.humanbrainproject.org/v0/data/minds/core/species/v1.0.0/f3490d7f-8f7f-4b40-b238-963dcac84412" - } - ], - "name": "Rat Whole brain (v2)", - "alias": "Whole brain", - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationregion/v1.0.0/b2b56201-472c-4f70-842f-cf2133eacaba" - } - ], - "species": [ - "Rattus norvegicus", - "Mus musculus" - ], - "name": "Brain-wide distribution of glutamate type 1 transporter protein (GLT1)", - "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/dataset/v1.0.0/f7a7d460-8724-4cd1-a06e-457eb8954fbd", - "contributors": [ - "Danbolt, Nils C.", - "Bjaalie, Jan G.", - "Leergaard, Trygve B.", - "Lehre, K.P.", - "Real, Katia", - "Scott, Heather A.", - "Holmseth, Silvia" - ], - "id": "63bbb845ac6d2f1839f919c2ef0455bc", - "kgReference": [ - "10.25493/Y147-2CE" - ], - "publications": [ - { - "name": "The concentrations and distributions of three C-terminal variants of the GLT1 (EAAT2; slc1a2) glutamate transporter protein in rat brain tissue suggest differential regulation", - "cite": "Holmseth, S., Scott, H. A., Real, K., Lehre, K. P., Leergaard, T. B., Bjaalie, J. G., & Danbolt, N. C. (2009). The concentrations and distributions of three C-terminal variants of the GLT1 (EAAT2; slc1a2) glutamate transporter protein in rat brain tissue suggest differential regulation. Neuroscience, 162(4), 1055–1071. ", - "doi": "10.1016/j.neuroscience.2009.03.048" - } - ] - } -] \ No newline at end of file diff --git a/deploy/datasets/util.js b/deploy/datasets/util.js deleted file mode 100644 index 48620a093e4ddc666e29be7f811930354f839e5d..0000000000000000000000000000000000000000 --- a/deploy/datasets/util.js +++ /dev/null @@ -1,417 +0,0 @@ -const { getPublicAccessToken: getPublic } = require('./../auth/util') -const { getCommonSenseDsFilter } = require('./supplements/commonSense') -const { hasPreview } = require('./supplements/previewFile') -const path = require('path') -const fs = require('fs') -const { getIdFromFullId, retry, flattenRegions, getUniqueRegionId, getStringIdsFromRegion, flattenReducer } = require('../../common/util') - -let getPublicAccessToken - -const KG_IDS = { - PARCELLATIONS: { - LONG_BUNDLE: 'juelich/iav/atlas/v1.0.0/5', - SHORT_BUNDLE: 'juelich/iav/atlas/v1.0.0/6', - JULICH_BRAIN: 'minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579', - JULICH_BRAIN_V25: 'minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579-26', - JULICH_BRAIN_V24_BIGBRAIN: 'juelich/iav/atlas/v1.0.0/7' - } -} - -const getUserKGRequestParam = async ({ user }) => { - let publicAccessToken - /** - * n.b. ACCESS_TOKEN env var is usually only set during dev - * user.type any other than 'hbp-oidc' (v1 of oidc) will result in timeout/error - */ - const accessToken = (user && user.type === 'hbp-oidc' && user.tokenset && user.tokenset.access_token) || process.env.ACCESS_TOKEN - const releasedOnly = !accessToken - if (!accessToken && getPublicAccessToken) { - publicAccessToken = await getPublicAccessToken() - } - const option = accessToken || publicAccessToken - ? { - auth: { bearer: accessToken || publicAccessToken } - } - : {} - - return { - option, - releasedOnly, - token: accessToken || publicAccessToken - } -} - -/** - * Needed by filter by parcellation - */ - -const readConfigFile = (filename) => new Promise((resolve, reject) => { - let filepath - if (process.env.NODE_ENV === 'production') { - filepath = path.join(__dirname, '..', 'res', filename) - } else { - filepath = path.join(__dirname, '..', '..', 'src', 'res', 'ext', filename) - } - fs.readFile(filepath, 'utf-8', (err, data) => { - if (err) reject(err) - resolve(data) - }) -}) - -const populateSet = (flattenedRegions, set = new Set()) => { - if (!(set instanceof Set)) throw `set needs to be an instance of Set` - if (!(flattenedRegions instanceof Array)) throw `flattenedRegions needs to be an instance of Array` - for (const region of flattenedRegions) { - const { name, relatedAreas, fullId } = region - if (fullId) { - set.add( - getIdFromFullId(fullId) - ) - } - if (relatedAreas && Array.isArray(relatedAreas)) { - for (const relatedArea of relatedAreas) { - const { fullId } = relatedArea - set.add( - getIdFromFullId(fullId) - ) - } - } - } - return set -} - -const initPrArray = [] - -/** - * regionMap maps schema/id to { parent, children } - */ -const regionMap = new Map() - -const getParseRegion = (template, parcellation) => { - - const getRegionIdsFromRegion = region => { - return [ - ...getStringIdsFromRegion(region), - getUniqueRegionId(template, parcellation, region) - ] - } - - const parseRegion = (region, parent) => { - const regionIds = getRegionIdsFromRegion(region) - const regionId = regionIds[0] - const { children, relatedAreas } = region - const childrenIds = (children || []).map(getRegionIdsFromRegion).reduce(flattenReducer, []) - const alternateIds = (relatedAreas || []).map(getRegionIdsFromRegion).reduce(flattenReducer, []) - - const regionObj = { - parent, - self: [ ...regionIds, ...alternateIds ], - children: childrenIds - } - regionMap.set(regionId, regionObj) - for (const altId of alternateIds) { - regionMap.set(altId, regionObj) - } - for (const c of (children || [])) { - parseRegion(c, regionId) - } - } - return parseRegion -} - -const processParc = (t, p) => { - const parseRegion = getParseRegion(t, p) - const { regions } = p - for (const r of regions) { - parseRegion(r) - } -} - -let juBrainSet = new Set(), - bigbrainCytoSet = new Set() - shortBundleSet = new Set(), - longBundleSet = new Set(), - waxholm1Set = new Set(), - waxholm2Set = new Set(), - waxholm3Set = new Set(), - allen2015Set = new Set(), - allen2017Set = new Set() - -initPrArray.push( - readConfigFile('bigbrain.json') - .then(data => JSON.parse(data)) - .then(json => { - for (const p of json.parcellations) { - processParc(json, p) - } - const bigbrainCyto = flattenRegions(json.parcellations.find(({ ['@id']: id }) => id === KG_IDS.PARCELLATIONS.JULICH_BRAIN_V24_BIGBRAIN).regions) - bigbrainCytoSet = populateSet(bigbrainCyto) - }) - .catch(console.error) -) - -initPrArray.push( - readConfigFile('MNI152.json') - .then(data => JSON.parse(data)) - .then(json => { - for (const p of json.parcellations) { - processParc(json, p) - } - const longBundle = flattenRegions(json.parcellations.find(({ ['@id']: id }) => id === KG_IDS.PARCELLATIONS.LONG_BUNDLE).regions) - const shortBundle = flattenRegions(json.parcellations.find(({ ['@id']: id }) => id === KG_IDS.PARCELLATIONS.SHORT_BUNDLE).regions) - const jubrain = flattenRegions(json.parcellations.find(({ ['@id']: id }) => id === KG_IDS.PARCELLATIONS.JULICH_BRAIN_V25).regions) - longBundleSet = populateSet(longBundle) - shortBundleSet = populateSet(shortBundle) - juBrainSet = populateSet(jubrain) - }) - .catch(console.error) -) - -initPrArray.push( - readConfigFile('waxholmRatV2_0.json') - .then(data => JSON.parse(data)) - .then(json => { - for (const p of json.parcellations) { - processParc(json, p) - } - const waxholm3 = flattenRegions(json.parcellations[0].regions) - const waxholm2 = flattenRegions(json.parcellations[1].regions) - const waxholm1 = flattenRegions(json.parcellations[2].regions) - - waxholm1Set = populateSet(waxholm1) - waxholm2Set = populateSet(waxholm2) - waxholm3Set = populateSet(waxholm3) - }) - .catch(console.error) -) - -initPrArray.push( - readConfigFile('allenMouse.json') - .then(data => JSON.parse(data)) - .then(json => { - for (const p of json.parcellations) { - processParc(json, p) - } - const flattenedAllen2017 = flattenRegions(json.parcellations[0].regions) - allen2017Set = populateSet(flattenedAllen2017) - - const flattenedAllen2015 = flattenRegions(json.parcellations[1].regions) - allen2015Set = populateSet(flattenedAllen2015) - }) - .catch(console.error) -) - -const datasetRegionExistsInParcellationRegion = async (prs, atlasPrSet = new Set()) => { - if (!(atlasPrSet instanceof Set)) throw `atlasPrSet needs to be a set!` - await Promise.all(initPrArray) - return prs.some(({ fullId }) => atlasPrSet.has( - getIdFromFullId(fullId) - )) -} - -const templateNameToIdMap = new Map([ - ['Big Brain (Histology)', { - kg: { - kgId: 'a1655b99-82f1-420f-a3c2-fe80fd4c8588', - kgSchema: 'minds/core/referencespace/v1.0.0' - } - }], - ['MNI 152 ICBM 2009c Nonlinear Asymmetric', { - kg: { - kgId: 'dafcffc5-4826-4bf1-8ff6-46b8a31ff8e2', - kgSchema: 'minds/core/referencespace/v1.0.0' - } - }], - ['MNI Colin 27', { - kg: { - kgId: '7f39f7be-445b-47c0-9791-e971c0b6d992', - kgSchema: 'minds/core/referencespace/v1.0.0' - } - }] -]) - -const getKgId = ({ templateName }) => { - const out = templateNameToIdMap.get(templateName) - if (!out) return null - const { kg } = out - const { kgSchema, kgId } = kg - return `${kgSchema}/${kgId}` -} - - -/** - * NB: if changed, also change ~/docs/advanced/datasets.md - * @param { templateName } template to be queried - */ -const datasetBelongsInTemplate = ({ templateName }) => ({ referenceSpaces }) => { - return referenceSpaces.some(({ name, fullId }) => - name === templateName - || fullId && fullId.includes(getKgId({ templateName }))) -} - -/** - * NB: if changed, also change ~/docs/advanced/dataset.md - * @param {parcellationName, dataset} param0 - */ -const datasetBelongToParcellation = ({ parcellationName = null, dataset = {parcellationAtlas: []} } = {}) => parcellationName === null || dataset.parcellationAtlas.length === 0 - ? true - : (dataset.parcellationAtlas || []).some(({ name }) => name === parcellationName) - -const relatedRegionsCache = new Map() -const traverseRegionMap = regionSchemaId => { - if (relatedRegionsCache.has(regionSchemaId)) return relatedRegionsCache.get(regionSchemaId) - const out = regionMap.get(regionSchemaId) - if (!out) { - return [] - } - const { parent, self, children } = out - - /** - * how to determine how to traverse the tree to determine related regions? - * for now, will traverse towards the parents - * ie, when selecting a leaf node, all nodes up to the root will be considered important - */ - - const relatedSchemaIds = self.concat( - parent ? traverseRegionMap(parent) : [] - ) - relatedRegionsCache.set(regionSchemaId, relatedSchemaIds) - return relatedSchemaIds -} - -const filterDatasetsByRegion = async (datasets = [], regionSchemaId) => { - await Promise.all(initPrArray) - const allRelevantSchemaSet = new Set(traverseRegionMap(regionSchemaId)) - return datasets.filter(ds => ds['parcellationRegion'].some(pr => allRelevantSchemaSet.has(getIdFromFullId(pr.fullId)))) -} - -/** - * NB: if changed, also change ~/docs/advanced/dataset.md - * @param {*} dataset - * @param {*} param1 - */ -const filterDataset = async (dataset = null, { templateName, parcellationName }) => { - - if (/infant/.test(dataset.name)) return false - - // check if dataset belongs to template selected - const flagDatasetBelongToTemplate = datasetBelongsInTemplate({ templateName })(dataset) - - // check that dataset belongs to template selected - - // if (dataset.parcellationRegion.length === 0) return false - - let useSet - - // temporary measure - // TODO ask curaion team re name of jubrain atlas - let overwriteParcellationName - switch (parcellationName) { - case 'Cytoarchitectonic Maps': - useSet = bigbrainCytoSet - overwriteParcellationName = 'Julich-Brain Atlas' - break; - case 'JuBrain Cytoarchitectonic Atlas': - useSet = juBrainSet - overwriteParcellationName = 'Julich-Brain Atlas' - break; - case 'Fibre Bundle Atlas - Short Bundle': - useSet = shortBundleSet - break; - case 'Fibre Bundle Atlas - Long Bundle': - useSet = longBundleSet - break; - case 'Waxholm Space rat brain atlas v1': - useSet = waxholm1Set - break; - case 'Waxholm Space rat brain atlas v2': - useSet = waxholm2Set - break; - case 'Waxholm Space rat brain atlas v3': - useSet = waxholm3Set - break; - case 'Allen Mouse Common Coordinate Framework v3 2015': - useSet = allen2015Set - break; - case 'Allen Mouse Common Coordinate Framework v3 2017': - useSet = allen2017Set - break; - default: - useSet = new Set() - } - const flagDatasetBelongToParcellation = datasetBelongToParcellation({ dataset, parcellationName: overwriteParcellationName || parcellationName }) - && await datasetRegionExistsInParcellationRegion(dataset.parcellationRegion, useSet) - - return flagDatasetBelongToTemplate || flagDatasetBelongToParcellation -} - -/** - * NB: if changed, also change ~/docs/advanced/dataset.md - * @param {*} datasets - * @param {*} param1 - */ -const filterDatasets = async (datasets = [], { templateName, parcellationName }) => { - - // filter by commonsense first (species) - const commonSenseFilteredDatasets = datasets.filter(getCommonSenseDsFilter({ templateName, parcellationName })) - - // filter by parcellation name and if region is in parcellation - const filteredDatasets = [] - for (const dataset of commonSenseFilteredDatasets) { - if (await filterDataset(dataset, { templateName, parcellationName })) { - filteredDatasets.push(dataset) - } - } - - // append if preview is available - const filteredDatasetsAppendingPreview = filteredDatasets.map(ds => { - return { - ...ds, - preview: hasPreview({ datasetName: ds.name }) - } - }) - - return filteredDatasetsAppendingPreview -} - -const init = async () => { - if (process.env.ACCESS_TOKEN) { - if (process.env.NODE_ENV === 'production') console.error(`ACCESS_TOKEN set in production!`) - else console.warn(`ACCESS_TOKEN environmental variable is set! All queries will be made made with ACCESS_TOKEN!`) - } - if (getPublicAccessToken) return - getPublicAccessToken = getPublic -} - -const KG_ROOT = process.env.KG_ROOT || `https://kg.humanbrainproject.eu/query` -const KG_SEARCH_VOCAB = process.env.KG_SEARCH_VOCAB || 'https://schema.hbp.eu/myQuery/' - -module.exports = { - getIdFromFullId, - populateSet, - init, - getUserKGRequestParam, - retry, - filterDatasets, - datasetBelongToParcellation, - datasetRegionExistsInParcellationRegion, - datasetBelongsInTemplate, - filterDatasetsByRegion, - _getParcellations: async () => { - await Promise.all(initPrArray) - return { - juBrainSet, - shortBundleSet, - longBundleSet, - waxholm1Set, - waxholm2Set, - waxholm3Set, - allen2015Set, - allen2017Set - } - }, - constants: { - KG_ROOT, - KG_SEARCH_VOCAB - } -} \ No newline at end of file diff --git a/deploy/datasets/util.spec.js b/deploy/datasets/util.spec.js deleted file mode 100644 index ca591c4483fee7fdfdffc1a448fdcdcd5d6fb506..0000000000000000000000000000000000000000 --- a/deploy/datasets/util.spec.js +++ /dev/null @@ -1,369 +0,0 @@ -const { populateSet, datasetBelongToParcellation, retry, datasetBelongsInTemplate, filterDatasets, datasetRegionExistsInParcellationRegion, _getParcellations, filterDatasetsByRegion } = require('./util') -const { fake } = require('sinon') -const { assert, expect } = require('chai') -const waxholmv2 = require('./testData/waxholmv2') -const allen2015 = require('./testData/allen2015') -const bigbrain = require('./testData/bigbrain') -const humanReceptor = require('./testData/humanReceptor') -const mni152JuBrain = require('./testData/mni152JuBrain') -const colin27 = require('./testData/colin27') -const hoc1Pmap = require('./testData/hoc1pmap') - -const SKIP_RETRY_TEST = process.env.SKIP_RETRY_TEST - -describe('datasets/util.js', () => { - - describe('retry', () => { - - if(SKIP_RETRY_TEST) return - - let val = 0 - - const failCall = fake() - const succeedCall = fake() - - const prFn = () => { - val++ - return val >=3 - ? (succeedCall(), Promise.resolve()) - : (failCall(), Promise.reject()) - } - - beforeEach(() => { - val = 0 - succeedCall.resetHistory() - failCall.resetHistory() - }) - - it('retry until succeed', async () => { - await retry(prFn) - assert(succeedCall.called) - assert(failCall.calledTwice) - }) - - it('retry with shorter timeouts', async () => { - await retry(prFn, { timeout: 100 }) - assert(succeedCall.called) - assert(failCall.calledTwice) - }) - - it('when retries excceeded, retry fn throws', async () => { - try { - await retry(prFn, { timeout: 100, retries: 2 }) - assert(false, 'retry fn should throw if retries exceed') - } catch (e) { - assert(true) - } - }) - }) - - describe('datasetBelongsInTemplate', () => { - it('should filter datasets with template defined', () => { - for (const ds of bigbrain) { - - const belong = datasetBelongsInTemplate({ templateName: 'Big Brain (Histology)' })(ds) - expect(belong).to.be.true - - } - for (const ds of colin27) { - - const belong = datasetBelongsInTemplate({ templateName: 'MNI Colin 27' })(ds) - expect(belong).to.be.true - } - }) - - it('should NOT include datasets without any reference space defined', () => { - for (const ds of humanReceptor) { - - const belong = datasetBelongsInTemplate({ templateName: 'Big Brain (Histology)' })(ds) - expect(belong).to.be.false - } - }) - - it('should filter out referenceSpaces not in list', () => { - for (const ds of bigbrain) { - - const belong = datasetBelongsInTemplate({ templateName: 'MNI 152 ICBM 2009c Nonlinear Asymmetric' })(ds) - expect(belong).to.be.false - } - for (const ds of mni152JuBrain) { - - const belong = datasetBelongsInTemplate({ templateName: 'Big Brain (Histology)' })(ds) - expect(belong).to.be.false - } - }) - }) - - describe('datasetRegionExistsInParcellationRegion', () => { - it('should filter waxholm v2 properly', async () => { - - const waxholmv2Pr = waxholmv2.map(dataset => { - return dataset.parcellationRegion - }) - - const { waxholm2Set } = await _getParcellations() - for (const pr of waxholmv2Pr){ - - const flag = await datasetRegionExistsInParcellationRegion(pr, waxholm2Set) - expect(flag).to.be.true - } - }) - - it('should filter mni152JuBrain jubrain properly', async () => { - const { juBrainSet } = await _getParcellations() - for (const ds of mni152JuBrain){ - - const { parcellationRegion: prs } = ds - const flag = await datasetRegionExistsInParcellationRegion(prs, juBrainSet) - expect(flag).to.be.true - } - }) - - it('should filter allen2015 properly', async () => { - const { allen2015Set } = await _getParcellations() - for (const ds of allen2015){ - - const flag2015 = await datasetRegionExistsInParcellationRegion(ds.parcellationRegion, allen2015Set) - expect( - flag2015 - ).to.be.true - - } - }) - - it('should filterout allen2015 datasets in allen2017', async () => { - - const { allen2017Set } = await _getParcellations() - for (const ds of allen2015){ - - const flag2017 = await datasetRegionExistsInParcellationRegion(ds.parcellationRegion, allen2017Set) - expect( - flag2017 - ).to.be.false - } - }) - - }) - - describe('filterDatasets', () => { - it('should filter waxholm v1 properly', async () => { - const filteredResult = await filterDatasets(waxholmv2, { parcellationName: 'Waxholm Space rat brain atlas v1' }) - expect(filteredResult).to.have.length(0) - }) - - it('should filter waxholm v2 properly', async () => { - const filteredResult = await filterDatasets(waxholmv2, { parcellationName: 'Waxholm Space rat brain atlas v2' }) - expect(filteredResult).to.have.length(1) - }) - - it('should filter allen 2015 properly', async () => { - - const filteredResult = await filterDatasets(allen2015, { parcellationName: 'Allen Mouse Common Coordinate Framework v3 2015' }) - expect(filteredResult).to.have.length(allen2015.length) - }) - }) - - describe('datasetBelongToParcellation', () => { - const dataset = { - parcellationAtlas:[{ - name: 'jubrain v17' - }] - } - const parcellationName = 'jubrain v17' - const dataset2 = { - parcellationAtlas:[{ - name: 'jubrain v18' - }] - } - const parcellationName2 = 'jubrain v18' - it('if parcellation name is undefined, will always return true', () => { - expect( - datasetBelongToParcellation({ - parcellationName: null, - dataset - }) - ).to.be.true - }) - it('if parcellationAtlas of dataset is empty array, will always return true', () => { - expect( - datasetBelongToParcellation({ - dataset: { parcellationAtlas: [] }, - parcellationName - })).to.be.true - }) - it('if parcellationAtlas of dataset is non empty array, and parcellationName is defined, should return false if they do not match', () => { - expect( - datasetBelongToParcellation({ - dataset, - parcellationName: parcellationName2 - }) - ).to.be.false - }) - - it('if parcellationAtlas of dataset is non empty array, and parcellationName is defined, should return true if they do match', () => { - expect( - datasetBelongToParcellation({ - dataset, - parcellationName - }) - ).to.be.true - }) - - it('allen2015 belong to parcellation', () => { - for (const ds of allen2015){ - - expect( - datasetBelongToParcellation({ - dataset: ds, - parcellationName: 'Allen Mouse Common Coordinate Framework v3 2015' - }) - ).to.be.true - } - }) - - it('hoc1pmap should not belong to bundle parcellation', () => { - for (const ds of hoc1Pmap){ - expect( - datasetBelongToParcellation({ - dataset: ds, - parcellationName: 'Fibre Bundle Atlas - Long Bundle' - }) - ).to.be.false - expect( - datasetBelongToParcellation({ - dataset: ds, - parcellationName: 'Fibre Bundle Atlas - Short Bundle' - }) - ).to.be.false - } - }) - }) - - describe('populateSet', () => { - it('should populate relatedAreas', () => { - const area44 = { - "name": "Area 44 (IFG)", - "arealabel": "Area-44", - "status": "publicP", - "labelIndex": null, - "synonyms": [], - "relatedAreas": [ - { - "name": "Area 44v", - "fullId": { - "kg": { - "kgSchema": "minds/core/parcellationregion/v1.0.0", - "kgId": "7e5e7aa8-28b8-445b-8980-2a6f3fa645b3" - } - } - }, - { - "name": "Area 44d", - "fullId": { - "kg": { - "kgSchema": "minds/core/parcellationregion/v1.0.0", - "kgId": "8aeae833-81c8-4e27-a8d6-deee339d6052" - } - } - } - ], - "rgb": [ - 54, - 74, - 75 - ], - "children": [ - ], - "fullId": { - "kg": { - "kgSchema": "minds/core/parcellationregion/v1.0.0", - "kgId": "8a6be82c-5947-4fff-8348-cf9bf73e4f40" - } - } - } - const set = populateSet([area44]) - expect(Array.from(set)).to.contain.members([ - 'minds/core/parcellationregion/v1.0.0/7e5e7aa8-28b8-445b-8980-2a6f3fa645b3', - 'minds/core/parcellationregion/v1.0.0/8aeae833-81c8-4e27-a8d6-deee339d6052', - 'minds/core/parcellationregion/v1.0.0/8a6be82c-5947-4fff-8348-cf9bf73e4f40', - ]) - }) - }) - - describe('filterDatasetsByRegion', () => { - - const idHumanTe1 = `minds/core/parcellationregion/v1.0.0/13e21153-2ba8-4212-b172-8894f1012225` - const idHumanTe1Alt = `minds/core/parcellationregion/v1.0.0/f424643e-9baf-4c50-9417-db1ac33dcd3e` - const idHumanArea7ASPL = 'minds/core/parcellationregion/v1.0.0/e26e999f-77ad-4934-9569-8290ed05ebda' - const idHumanArea7A = `minds/core/parcellationregion/v1.0.0/811f4adb-4a7c-45c1-8034-4afa9edf586a` - const idMouseWholeBrain = `minds/core/parcellationregion/v1.0.0/be45bc91-8db5-419f-9471-73a320f44e06` - const idMousePrimaryMotor = `minds/core/parcellationregion/v1.0.0/a07b4390-62db-451b-b211-a45f67c6b18e` - const idMousePrimarySomatosensory = `minds/core/parcellationregion/v1.0.0/f99995b6-a3d0-42be-88c3-eff8a83e60ea` - - const dataHumanArea7ASPL = { - name: 'dataHumanArea7ASPL', - parcellationRegion: [{ - fullId: idHumanArea7ASPL - }] - } - const dataHumanTe1 = { - name: 'dataHumanTe1', - parcellationRegion: [{ - fullId: idHumanTe1 - }] - } - const dataMouseWholeBrain = { - name: 'dataMouseWholeBrain', - parcellationRegion: [{ - fullId: idMouseWholeBrain - }] - } - - const dataMousePrimaryMotor = { - name: 'dataMousePrimaryMotor', - parcellationRegion: [{ - // Mouse Primary motor area (2017) - fullId: idMousePrimaryMotor - }] - } - - describe('human parc regions', () => { - it('should leave in data with matching reference space', async () => { - const result = await filterDatasetsByRegion([dataHumanArea7ASPL], idHumanArea7ASPL) - expect(result).to.deep.equal([dataHumanArea7ASPL]) - }) - it('should filter out data with no matching reference space', async () => { - const result = await filterDatasetsByRegion([dataMouseWholeBrain], idHumanArea7ASPL) - expect(result).to.deep.equal([]) - }) - it('if query region is relatedAreas, should also leave in dataset', async () => { - const result = await filterDatasetsByRegion([dataHumanTe1], idHumanTe1Alt) - expect(result).to.deep.equal([dataHumanTe1]) - }) - }) - - describe('mouse parc regions', () => { - - it('should leave in data with matchin reference space', async () => { - const result = await filterDatasetsByRegion([dataMouseWholeBrain], idMouseWholeBrain) - expect(result).to.deep.equal([dataMouseWholeBrain]) - - const result2 = await filterDatasetsByRegion([dataMousePrimaryMotor], idMousePrimaryMotor) - expect(result2).to.deep.equal([dataMousePrimaryMotor]) - }) - it('should filter out data with no matching referene space', async () => { - const result = await filterDatasetsByRegion([dataHumanArea7ASPL], idMouseWholeBrain) - expect(result).to.deep.equal([]) - }) - it('should filter out data if sup region is selected', async () => { - // example: whole brain is selected, but dataset in primary motor area will be FILTERED OUT - const result = await filterDatasetsByRegion([dataMousePrimaryMotor], idMouseWholeBrain) - expect(result).to.deep.equal([]) - }) - it('should leave in data when sub region is selected', async () => { - const result = await filterDatasetsByRegion([dataMouseWholeBrain], idMousePrimaryMotor) - expect(result).to.deep.equal([dataMouseWholeBrain]) - }) - }) - }) -}) diff --git a/deploy/nehubaConfig/index.js b/deploy/nehubaConfig/index.js deleted file mode 100644 index d6f9a44b3dea55079f9b9c06190e71d1074070fc..0000000000000000000000000000000000000000 --- a/deploy/nehubaConfig/index.js +++ /dev/null @@ -1,19 +0,0 @@ -const express = require('express') -const { getTemplateNehubaConfig } = require('./query') -const { detEncoding } = require('nomiseco') -const { getHandleErrorFn } = require('../util/streamHandleError') - -const nehubaConfigRouter = express.Router() - -nehubaConfigRouter.get('/:configId', (req, res, next) => { - - const header = req.get('Accept-Encoding') - const acceptedEncoding = detEncoding(header) - - const { configId } = req.params - if (acceptedEncoding) res.set('Content-Encoding', acceptedEncoding) - - getTemplateNehubaConfig({ configId, acceptedEncoding, returnAsStream:true}).pipe(res).on('error', getHandleErrorFn(req, res)) -}) - -module.exports = nehubaConfigRouter \ No newline at end of file diff --git a/deploy/nehubaConfig/query.js b/deploy/nehubaConfig/query.js deleted file mode 100644 index 5bbcd012a7f33654983ac1c13eecc81dd4d3e184..0000000000000000000000000000000000000000 --- a/deploy/nehubaConfig/query.js +++ /dev/null @@ -1,43 +0,0 @@ -const fs = require('fs') -const path = require('path') -const { BROTLI, GZIP } = require('nomiseco') -const { reconfigureUrl, PRECOMPUTED_SERVER } = require('../util/reconfigPrecomputedServer') -const through2 = require('through2') - -const getFileAsPromise = filepath => new Promise((resolve, reject) => { - fs.readFile(filepath, 'utf-8', (err, data) => { - if (err) return reject(err) - - resolve( - PRECOMPUTED_SERVER - ? reconfigureUrl(data) - : data - ) - }) -}) - -exports.getTemplateNehubaConfig = ({configId, acceptedEncoding, returnAsStream}) => { - if (process.env.NODE_ENV === 'production') { - filepath = path.join(__dirname, '..', 'res', `${configId}.json`) - } else { - filepath = path.join(__dirname, '..', '..', 'src', 'res', 'ext', `${configId}.json`) - } - - if (acceptedEncoding === BROTLI) { - if (returnAsStream) return fs.createReadStream(`${filepath}.br`) - else return getFileAsPromise(`${filepath}.br`) - } - - if (acceptedEncoding === GZIP) { - if (returnAsStream) return fs.createReadStream(`${filepath}.gz`) - else return getFileAsPromise(`${filepath}.gz`) - } - - // no need to handle error. handled downstream - if (returnAsStream) return fs.createReadStream(filepath).pipe( - through2.obj(function(file, enc, cb){ - cb(null, reconfigureUrl(file.toString())) - }) - ) - else return getFileAsPromise(filepath) -} diff --git a/deploy/templates/index.js b/deploy/templates/index.js deleted file mode 100644 index 3378428b1d57b309069aaa248fab7bd6da431338..0000000000000000000000000000000000000000 --- a/deploy/templates/index.js +++ /dev/null @@ -1,51 +0,0 @@ -const router = require('express').Router() -const query = require('./query') -const path = require('path') -const { detEncoding } = require('nomiseco') -const url = require('url') -const { getHandleErrorFn } = require('../util/streamHandleError') - -/** - * root path fetches all templates - */ -router.get('/', (req, res, next) => { - query.getAllTemplates() - .then(templates => { - - const templatesRes = templates.map(v => { - return url.resolve(`${res.locals.routePathname}/`, v) - }) - res.status(200).json(templatesRes) - }) - .catch(error => next({ - code: 500, - error, - trace: 'getTemplate' - })) -}) - -router.get('/:template', (req, res, next) => { - const { template } = req.params - - const header = req.get('Accept-Encoding') - const acceptedEncoding = detEncoding(header) - - query.getAllTemplates() - .then(templates => { - if (templates.indexOf(template) < 0) - return next({ - code : 404, - error: 'template not in the list supported' - }) - - if (acceptedEncoding) res.set('Content-Encoding', acceptedEncoding) - query.getTemplate({ template, acceptedEncoding, returnAsStream:true }).pipe(res).on('error', getHandleErrorFn(req, res)) - }) - .catch(error => next({ - code: 500, - error, - trace: 'getTemplate/template' - })) -}) - -module.exports = router \ No newline at end of file diff --git a/deploy/templates/query.js b/deploy/templates/query.js deleted file mode 100644 index 9dbbafb4b1c9bbd3d6dc80b97d9128dec7b0532b..0000000000000000000000000000000000000000 --- a/deploy/templates/query.js +++ /dev/null @@ -1,50 +0,0 @@ -const fs = require('fs') -const path = require('path') -const { BROTLI, GZIP } = require('nomiseco') - -exports.getAllTemplates = () => new Promise((resolve, reject) => { - - /** - * TODO temporary. Need to query KG or something else for this data in the future - */ - const templates = [ - // 'infant', - 'bigbrain', - 'colin', - 'MNI152', - 'waxholmRatV2_0', - 'allenMouse', - 'freesurfer' - ] - resolve(templates) -}) - -const getFileAsPromise = filepath => new Promise((resolve, reject) => { - fs.readFile(filepath, 'utf-8', (err, data) => { - if (err) return reject(err) - resolve(data) - }) -}) - -exports.getTemplate = ({ template, acceptedEncoding, returnAsStream }) => { - - let filepath - if (process.env.NODE_ENV === 'production') { - filepath = path.join(__dirname, '..', 'res', `${template}.json`) - } else { - filepath = path.join(__dirname, '..', '..', 'src', 'res', 'ext', `${template}.json`) - } - - if (acceptedEncoding === BROTLI) { - if (returnAsStream) return fs.createReadStream(`${filepath}.br`) - else return getFileAsPromise(`${filepath}.br`) - } - - if (acceptedEncoding === GZIP) { - if (returnAsStream) return fs.createReadStream(`${filepath}.gz`) - else return getFileAsPromise(`${filepath}.gz`) - } - - if (returnAsStream) return fs.createReadStream(filepath) - else return getFileAsPromise(filepath) -} \ No newline at end of file diff --git a/src/glue.ts b/src/glue.ts index 185a89bec4e32457d564afe2407af4a1bb612a45..3b60dbc26987d138f50c780f7a95b19b88ac2f17 100644 --- a/src/glue.ts +++ b/src/glue.ts @@ -389,9 +389,6 @@ export class DatasetPreviewGlue implements IDatasetPreviewGlue, OnDestroy{ private openDatasetPreviewWidget(data: IDatasetPreviewData) { const { datasetId: kgId, filename } = data - - if (!!this.actionOnWidget) { - } } public datasetPreviewDisplayed(file: DatasetPreview, dataset?: IKgDataEntry){