diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 04f5a9d4cd45690589842a134d2985614ed62403..c3c07d114df83ae2c2dc663da720cc5451914f31 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -2,10 +2,6 @@ name: '[ci]'
on:
push:
- branches-ignore:
- - 'dev'
- - 'staging'
- - 'master'
# ignore changes to docs and mkdocs.yml
paths-ignore:
@@ -66,4 +62,4 @@ jobs:
cd deploy
npm i
npm run test
-
\ No newline at end of file
+
diff --git a/.github/workflows/docker_img.yml b/.github/workflows/docker_img.yml
index 3366bae8a3fcb7db4160d5c103970f0ae56d39e2..495f946a603cb7cd81a61d4416fda31b560a64fb 100644
--- a/.github/workflows/docker_img.yml
+++ b/.github/workflows/docker_img.yml
@@ -120,43 +120,65 @@ jobs:
echo "BUILD_TEXT=$BRANCH_NAME" >> $GITHUB_ENV
fi
+ # DEPLOY_ID == remove _ / and lowercase everything from branch
+ DEPLOY_ID=$(echo ${BRANCH_NAME//[_\/]/} | awk '{ print tolower($0) }')
+ echo "DEPLOY_ID=$DEPLOY_ID" >> $GITHUB_ENV
+
if [[ "$BRANCH_NAME" == 'master' ]] || [[ "$BRANCH_NAME" == 'staging' ]]
then
echo "OKD_URL=https://okd.hbp.eu:443" >> $GITHUB_ENV
echo "OKD_SECRET=${{ secrets.OKD_PROD_SECRET }}" >> $GITHUB_ENV
echo "OKD_PROJECT=interactive-viewer" >> $GITHUB_ENV
echo "ROUTE_HOST=siibra-explorer.apps.hbp.eu" >> $GITHUB_ENV
- echo "Deploy on prod cluster..."
+
+ if [[ "$BRANCH_NAME" == 'master' ]]
+ then
+ FULL_DEPLOY_ID=siibra-explorer-branch-deploy-2-prodpathviewer
+ FULL_DEPLOY_ID2=siibra-explorer-branch-deploy-2-iav-legacy
+ echo "FULL_DEPLOY_ID=$FULL_DEPLOY_ID" >> $GITHUB_ENV
+ echo "FULL_DEPLOY_ID2=$FULL_DEPLOY_ID2" >> $GITHUB_ENV
+ else
+ FULL_DEPLOY_ID=siibra-explorer-branch-deploy-2-stagingpathed
+ echo "FULL_DEPLOY_ID=$FULL_DEPLOY_ID" >> $GITHUB_ENV
+ fi
+
+ echo "Deploy on **prod** cluster..."
+ echo "Deploy id: **${FULL_DEPLOY_ID}** ..."
+ if [ ! -z "$FULL_DEPLOY_ID2" ]
+ then
+ echo "Secondary deploy id: **$FULL_DEPLOY_ID2** ..."
+ fi
else
echo "OKD_URL=https://okd-dev.hbp.eu:443" >> $GITHUB_ENV
echo "OKD_SECRET=${{ secrets.OKD_DEV_SECRET }}" >> $GITHUB_ENV
echo "OKD_PROJECT=interactive-atlas-viewer" >> $GITHUB_ENV
echo "ROUTE_HOST=siibra-explorer.apps-dev.hbp.eu" >> $GITHUB_ENV
echo "BUILD_TEXT=$BRANCH_NAME" >> $GITHUB_ENV
- echo "Deploy on dev cluster..."
+ FULL_DEPLOY_ID=${{ env.OC_TEMPLATE_NAME }}-$DEPLOY_ID
+ echo "FULL_DEPLOY_ID=$FULL_DEPLOY_ID" >> $GITHUB_ENV
+ echo "Deploy on **dev** cluster ..."
+ echo "Deploy id: **${FULL_DEPLOY_ID}** ..."
fi
- name: 'Login via oc cli & deploy'
run: |
oc login $OKD_URL --token=$OKD_SECRET
oc project $OKD_PROJECT
-
- # DEPLOY_ID == remove _ / and lowercase everything from branch
- DEPLOY_ID=$(echo ${BRANCH_NAME//[_\/]/} | awk '{ print tolower($0) }')
- echo "DEPLOY_ID=$DEPLOY_ID" >> $GITHUB_ENV
ROUTE_PATH=/$DEPLOY_ID
echo "ROUTE_PATH=$ROUTE_PATH" >> $GITHUB_ENV
echo "Working branch name: $BRANCH_NAME, deploy_id: $DEPLOY_ID"
+ echo "full deploy id: $FULL_DEPLOY_ID, secondary deploy id: $FULL_DEPLOY_ID2"
# check if the deploy already exist
- if oc get dc ${{ env.OC_TEMPLATE_NAME }}-$DEPLOY_ID; then
+
+ if oc get dc $FULL_DEPLOY_ID; then
# trigger redeploy if deployconfig exists already
- echo "dc ${{ env.OC_TEMPLATE_NAME }}-$DEPLOY_ID already exist, redeploy..."
- oc rollout latest dc/${{ env.OC_TEMPLATE_NAME }}-$DEPLOY_ID
+ echo "dc $FULL_DEPLOY_ID already exist, redeploy..."
+ oc rollout latest dc/$FULL_DEPLOY_ID
else
# create new app if deployconfig does not yet exist
- echo "dc ${{ env.OC_TEMPLATE_NAME }}-$DEPLOY_ID does not yet exist, create new app..."
+ echo "dc $FULL_DEPLOY_ID does not yet exist, create new app..."
oc new-app --template ${{ env.OC_TEMPLATE_NAME }} \
-p BRANCH_NAME=$BRANCH_NAME \
-p DEPLOY_ID=$DEPLOY_ID \
@@ -164,6 +186,13 @@ jobs:
-p ROUTE_PATH=$ROUTE_PATH \
-p BUILD_TEXT=$BUILD_TEXT
fi
+
+ if [ ! -z "$FULL_DEPLOY_ID2" ]
+ then
+ echo "FULL_DEPLOY_ID2 is defined, trying to redeploy $FULL_DEPLOY_ID2 ..."
+ oc rollout latest dc/$FULL_DEPLOY_ID2
+ fi
+
- name: 'Update status badge'
if: success()
run: |
diff --git a/.openshift/v2/okd_branch_tmpl_v2.yaml b/.openshift/v2/okd_branch_tmpl_v2.yaml
index 3c95ec2f701e87531bb089d0c7e47c1bc020a08a..2524636a1200dd685aa0221cce117ba66fb85e19 100644
--- a/.openshift/v2/okd_branch_tmpl_v2.yaml
+++ b/.openshift/v2/okd_branch_tmpl_v2.yaml
@@ -48,6 +48,8 @@ objects:
name: plugins
- configMapRef:
name: other-deploy-config
+ - configMapRef:
+ name: obj-storage-cred
image: "docker-registry.ebrains.eu/siibra/siibra-explorer:${BRANCH_NAME}"
imagePullPolicy: Always
diff --git a/Dockerfile b/Dockerfile
index 3b017144535e201d255259c3b28ec4833d965e0c..14bfaf866d6b8db773443eebc37b32f54300432d 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -44,7 +44,7 @@ RUN npm i
RUN npm run build-aot
# gzipping container
-FROM ubuntu:20.10 as compressor
+FROM ubuntu:22.04 as compressor
RUN apt upgrade -y && apt update && apt install brotli
RUN mkdir /iv
diff --git a/angular.json b/angular.json
index 68b6001b6a2bd6b197221bcf374c11f378bff086..9797b5413cb83b570a3695fe1a1bdca44b6a2de7 100644
--- a/angular.json
+++ b/angular.json
@@ -29,7 +29,6 @@
"tsConfig": "tsconfig.app.json",
"inlineStyleLanguage": "css",
"assets": [
- "src/favicon.ico",
"src/assets"
],
"styles": [
@@ -49,6 +48,10 @@
"input": "worker/worker-nifti.js",
"inject": false,
"bundleName": "worker-nifti"
+ },{
+ "input": "worker/worker-typedarray.js",
+ "inject": false,
+ "bundleName": "worker-typedarray"
},
{
@@ -60,7 +63,11 @@
"inject": false,
"bundleName": "syntaxError"
},
-
+ {
+ "input": "third_party/extra_js.js",
+ "inject": false,
+ "bundleName": "extra_js"
+ },
{
"input": "third_party/vanilla_nehuba.js",
"inject": false,
diff --git a/deploy/package-lock.json b/deploy/package-lock.json
index b8399147d5ab12a520ea0f2068cba33945db6f9b..63b90188fc5fde7785300b8e12b07082d01d311a 100644
--- a/deploy/package-lock.json
+++ b/deploy/package-lock.json
@@ -95,6 +95,12 @@
"@types/node": "*"
}
},
+ "@ungap/promise-all-settled": {
+ "version": "1.1.2",
+ "resolved": "https://registry.npmjs.org/@ungap/promise-all-settled/-/promise-all-settled-1.1.2.tgz",
+ "integrity": "sha512-sL/cEvJWAnClXw0wHk85/2L0G6Sj8UB0Ctc1TEMbKSsmpRosqhwj9gWgFRZSrBr2f9tiXISwNhCPmlfqUqyb9Q==",
+ "dev": true
+ },
"accepts": {
"version": "1.3.5",
"resolved": "https://registry.npmjs.org/accepts/-/accepts-1.3.5.tgz",
@@ -114,26 +120,26 @@
}
},
"ajv": {
- "version": "6.10.0",
- "resolved": "https://registry.npmjs.org/ajv/-/ajv-6.10.0.tgz",
- "integrity": "sha512-nffhOpkymDECQyR0mnsUtoCE8RlX38G0rYP+wgLWFyZuUyuuojSSvi/+euOiQBIn63whYwYVIIH1TvE3tu4OEg==",
+ "version": "6.12.6",
+ "resolved": "https://registry.npmjs.org/ajv/-/ajv-6.12.6.tgz",
+ "integrity": "sha512-j3fVLgvTo527anyYyJOGTYJbG+vnnQYvE0m5mmkc1TK+nxAppkCLMIL0aZ4dblVCNoGShhm+kzE4ZUykBoMg4g==",
"requires": {
- "fast-deep-equal": "^2.0.1",
+ "fast-deep-equal": "^3.1.1",
"fast-json-stable-stringify": "^2.0.0",
"json-schema-traverse": "^0.4.1",
"uri-js": "^4.2.2"
}
},
"ansi-colors": {
- "version": "3.2.3",
- "resolved": "https://registry.npmjs.org/ansi-colors/-/ansi-colors-3.2.3.tgz",
- "integrity": "sha512-LEHHyuhlPY3TmuUYMh2oz89lTShfvgbmzaBcxve9t/9Wuy7Dwf4yoAKcND7KFT1HAQfqZ12qtc+DUrBMeKF9nw==",
+ "version": "4.1.1",
+ "resolved": "https://registry.npmjs.org/ansi-colors/-/ansi-colors-4.1.1.tgz",
+ "integrity": "sha512-JoX0apGbHaUJBNl6yF+p6JAFYZ666/hhCGKN5t9QFjbJQKUU/g8MNbFDbvfrgKXvI1QpZplPOnwIo99lX/AAmA==",
"dev": true
},
"ansi-regex": {
- "version": "3.0.0",
- "resolved": "https://registry.npmjs.org/ansi-regex/-/ansi-regex-3.0.0.tgz",
- "integrity": "sha1-7QMXwyIGT3lGbAKWa922Bas32Zg=",
+ "version": "5.0.1",
+ "resolved": "https://registry.npmjs.org/ansi-regex/-/ansi-regex-5.0.1.tgz",
+ "integrity": "sha512-quJQXlTSUGL2LH9SUXo8VwsY4soanhgo6LNSm84E1LBcE8s3O0wpdiRzyR9z/ZZJMlMWv37qOOb9pdJlMUEKFQ==",
"dev": true
},
"ansi-styles": {
@@ -144,6 +150,16 @@
"color-convert": "^1.9.0"
}
},
+ "anymatch": {
+ "version": "3.1.2",
+ "resolved": "https://registry.npmjs.org/anymatch/-/anymatch-3.1.2.tgz",
+ "integrity": "sha512-P43ePfOAIupkguHUycrc4qJ9kz8ZiuOUijaETwX7THt0Y/GNK7v0aa8rY816xWjZ7rJdA5XdMcpVFTKMq+RvWg==",
+ "dev": true,
+ "requires": {
+ "normalize-path": "^3.0.0",
+ "picomatch": "^2.0.4"
+ }
+ },
"archiver": {
"version": "3.1.1",
"resolved": "https://registry.npmjs.org/archiver/-/archiver-3.1.1.tgz",
@@ -216,13 +232,10 @@
}
},
"argparse": {
- "version": "1.0.10",
- "resolved": "https://registry.npmjs.org/argparse/-/argparse-1.0.10.tgz",
- "integrity": "sha512-o5Roy6tNG4SL/FOkCAN6RzjiakZS25RLYFrcMttJqbdd8BWrnA+fGz57iN5Pb06pvBGvl5gQ0B48dJlslXvoTg==",
- "dev": true,
- "requires": {
- "sprintf-js": "~1.0.2"
- }
+ "version": "2.0.1",
+ "resolved": "https://registry.npmjs.org/argparse/-/argparse-2.0.1.tgz",
+ "integrity": "sha512-8+9WqebbFzpX9OR+Wa6O29asIogeRMzcGtAINdpMHHyAg10f05aSFVBbcEqGf/PXw1EjAZ+q2/bEBg3DvurK3Q==",
+ "dev": true
},
"array-flatten": {
"version": "1.1.1",
@@ -230,9 +243,9 @@
"integrity": "sha1-ml9pkFGx5wczKPKgCJaLZOopVdI="
},
"asn1": {
- "version": "0.2.4",
- "resolved": "https://registry.npmjs.org/asn1/-/asn1-0.2.4.tgz",
- "integrity": "sha512-jxwzQpLQjSmWXgwaCZE9Nz+glAG01yF1QnWgbhGwHI5A6FRIEY6IVqtHhIepHqI7/kyEyQEagBC5mBEFlIYvdg==",
+ "version": "0.2.6",
+ "resolved": "https://registry.npmjs.org/asn1/-/asn1-0.2.6.tgz",
+ "integrity": "sha512-ix/FxPn0MDjeyJ7i/yoHGFt/EX6LyNbxSEhPPXODPL+KB0VPk86UYfL0lMdy+KCnv+fmvIzySwaK5COwqVbWTQ==",
"requires": {
"safer-buffer": "~2.1.0"
}
@@ -274,9 +287,9 @@
"integrity": "sha1-tG6JCTSpWR8tL2+G1+ap8bP+dqg="
},
"aws4": {
- "version": "1.8.0",
- "resolved": "https://registry.npmjs.org/aws4/-/aws4-1.8.0.tgz",
- "integrity": "sha512-ReZxvNHIOv88FlT7rxcXIIC0fPt4KZqZbOlivyWtXLt8ESx84zd3kMC6iK5jVeS2qt+g7ftS7ye4fi06X5rtRQ=="
+ "version": "1.11.0",
+ "resolved": "https://registry.npmjs.org/aws4/-/aws4-1.11.0.tgz",
+ "integrity": "sha512-xh1Rl34h6Fi1DC2WWKfxUTVqRsNnr6LsKz2+hfwDxQJWmrx8+c7ylaqBMcHfl1U1r2dsifOvKX3LQuLNZ+XSvA=="
},
"balanced-match": {
"version": "1.0.0",
@@ -291,6 +304,12 @@
"tweetnacl": "^0.14.3"
}
},
+ "binary-extensions": {
+ "version": "2.2.0",
+ "resolved": "https://registry.npmjs.org/binary-extensions/-/binary-extensions-2.2.0.tgz",
+ "integrity": "sha512-jDctJ/IVQbZoJykoeHbhXpOlNBqGNcwXJKJog42E5HDPUwQTSdjCHdihjj0DlnheQ7blbT6dHOafNAiS8ooQKA==",
+ "dev": true
+ },
"bl": {
"version": "3.0.1",
"resolved": "https://registry.npmjs.org/bl/-/bl-3.0.1.tgz",
@@ -388,6 +407,15 @@
"concat-map": "0.0.1"
}
},
+ "braces": {
+ "version": "3.0.2",
+ "resolved": "https://registry.npmjs.org/braces/-/braces-3.0.2.tgz",
+ "integrity": "sha512-b8um+L1RzM3WDSzvhm6gIz1yfTbBt6YTlcEKAvsmqCZZFw46z626lVj9j1yEPW33H5H+lBQpZMP1k8l+78Ha0A==",
+ "dev": true,
+ "requires": {
+ "fill-range": "^7.0.1"
+ }
+ },
"browser-stdout": {
"version": "1.3.1",
"resolved": "https://registry.npmjs.org/browser-stdout/-/browser-stdout-1.3.1.tgz",
@@ -460,23 +488,46 @@
}
},
"chalk": {
- "version": "2.4.2",
- "resolved": "https://registry.npmjs.org/chalk/-/chalk-2.4.2.tgz",
- "integrity": "sha512-Mti+f9lpJNcwF4tWV8/OrTTtF1gZi+f8FqlyAdouralcFWFQWF2+NgCHShjkCb+IFBLq9buZwE1xckQU4peSuQ==",
+ "version": "4.1.2",
+ "resolved": "https://registry.npmjs.org/chalk/-/chalk-4.1.2.tgz",
+ "integrity": "sha512-oKnbhFyRIXpUuez8iBMmyEa4nbj4IOQyuhc/wy9kY7/WVPcwIO9VA668Pu8RkO7+0G76SLROeyw9CpQ061i4mA==",
"dev": true,
"requires": {
- "ansi-styles": "^3.2.1",
- "escape-string-regexp": "^1.0.5",
- "supports-color": "^5.3.0"
+ "ansi-styles": "^4.1.0",
+ "supports-color": "^7.1.0"
},
"dependencies": {
+ "ansi-styles": {
+ "version": "4.3.0",
+ "resolved": "https://registry.npmjs.org/ansi-styles/-/ansi-styles-4.3.0.tgz",
+ "integrity": "sha512-zbB9rCJAT1rbjiVDb2hqKFHNYLxgtk8NURxZ3IZwD3F6NtxbXZQCnnSi1Lkx+IDohdPlFp222wVALIheZJQSEg==",
+ "dev": true,
+ "requires": {
+ "color-convert": "^2.0.1"
+ }
+ },
+ "color-convert": {
+ "version": "2.0.1",
+ "resolved": "https://registry.npmjs.org/color-convert/-/color-convert-2.0.1.tgz",
+ "integrity": "sha512-RRECPsj7iu/xb5oKYcsFHSppFNnsj/52OVTRKb4zP5onXwVF3zVmmToNcOfGC+CRDpfK/U584fMg38ZHCaElKQ==",
+ "dev": true,
+ "requires": {
+ "color-name": "~1.1.4"
+ }
+ },
+ "color-name": {
+ "version": "1.1.4",
+ "resolved": "https://registry.npmjs.org/color-name/-/color-name-1.1.4.tgz",
+ "integrity": "sha512-dOy+3AuW3a2wNbZHIuMZpTcgjGuLU/uBL/ubcZF9OXbDo8ff4O8yVp5Bf0efS8uEoYo5q4Fx7dY9OgQGXgAsQA==",
+ "dev": true
+ },
"supports-color": {
- "version": "5.5.0",
- "resolved": "https://registry.npmjs.org/supports-color/-/supports-color-5.5.0.tgz",
- "integrity": "sha512-QjVjwdXIt408MIiAqCX4oUKsgU2EqAGzs2Ppkm4aQYbjm+ZEWEcW4SfFNTr4uMNZma0ey4f5lgLrkB0aX0QMow==",
+ "version": "7.2.0",
+ "resolved": "https://registry.npmjs.org/supports-color/-/supports-color-7.2.0.tgz",
+ "integrity": "sha512-qpCAvRl9stuOHveKsn7HncJRvv501qIacKzQlO/+Lwxc9+0q2wLyv4Dfvt80/DPn2pqOBsJdDiogXGR9+OvwRw==",
"dev": true,
"requires": {
- "has-flag": "^3.0.0"
+ "has-flag": "^4.0.0"
}
}
}
@@ -487,20 +538,36 @@
"integrity": "sha1-V00xLt2Iu13YkS6Sht1sCu1KrII=",
"dev": true
},
+ "chokidar": {
+ "version": "3.5.2",
+ "resolved": "https://registry.npmjs.org/chokidar/-/chokidar-3.5.2.tgz",
+ "integrity": "sha512-ekGhOnNVPgT77r4K/U3GDhu+FQ2S8TnK/s2KbIGXi0SZWuwkZ2QNyfWdZW+TVfn84DpEP7rLeCt2UI6bJ8GwbQ==",
+ "dev": true,
+ "requires": {
+ "anymatch": "~3.1.2",
+ "braces": "~3.0.2",
+ "fsevents": "~2.3.2",
+ "glob-parent": "~5.1.2",
+ "is-binary-path": "~2.1.0",
+ "is-glob": "~4.0.1",
+ "normalize-path": "~3.0.0",
+ "readdirp": "~3.6.0"
+ }
+ },
"clean-stack": {
"version": "2.2.0",
"resolved": "https://registry.npmjs.org/clean-stack/-/clean-stack-2.2.0.tgz",
"integrity": "sha512-4diC9HaTE+KRAMWhDhrGOECgWZxoevMc5TlkObMqNSsVU62PYzXZ/SMTjzyGAFF1YusgxGcSWTEXBhp0CPwQ1A=="
},
"cliui": {
- "version": "4.1.0",
- "resolved": "https://registry.npmjs.org/cliui/-/cliui-4.1.0.tgz",
- "integrity": "sha512-4FG+RSG9DL7uEwRUZXZn3SS34DiDPfzP0VOiEwtUWlE+AR2EIg+hSyvrIgUUfhdgR/UkAeW2QHgeP+hWrXs7jQ==",
+ "version": "7.0.4",
+ "resolved": "https://registry.npmjs.org/cliui/-/cliui-7.0.4.tgz",
+ "integrity": "sha512-OcRE68cOsVMXp1Yvonl/fzkQOyjLSu/8bhPDfQt0e0/Eb283TKP20Fs2MqoPsr9SwA595rRCA+QMzYc9nBP+JQ==",
"dev": true,
"requires": {
- "string-width": "^2.1.1",
- "strip-ansi": "^4.0.0",
- "wrap-ansi": "^2.0.0"
+ "string-width": "^4.2.0",
+ "strip-ansi": "^6.0.0",
+ "wrap-ansi": "^7.0.0"
}
},
"clone": {
@@ -523,12 +590,6 @@
}
}
},
- "code-point-at": {
- "version": "1.1.0",
- "resolved": "https://registry.npmjs.org/code-point-at/-/code-point-at-1.1.0.tgz",
- "integrity": "sha1-DQcLTQQ6W+ozovGkDi7bPZpMz3c=",
- "dev": true
- },
"color-convert": {
"version": "1.9.3",
"resolved": "https://registry.npmjs.org/color-convert/-/color-convert-1.9.3.tgz",
@@ -543,9 +604,9 @@
"integrity": "sha1-p9BVi9icQveV3UIyj3QIMcpTvCU="
},
"combined-stream": {
- "version": "1.0.7",
- "resolved": "https://registry.npmjs.org/combined-stream/-/combined-stream-1.0.7.tgz",
- "integrity": "sha512-brWl9y6vOB1xYPZcpZde3N9zDByXTosAeMDo4p1wzo6UMOX4vumB+TP1RZ76sfE6Md68Q0NJSrE/gbezd4Ul+w==",
+ "version": "1.0.8",
+ "resolved": "https://registry.npmjs.org/combined-stream/-/combined-stream-1.0.8.tgz",
+ "integrity": "sha512-FQN4MRfuJeHf7cBbBMJFXhKSDq+2kAArBlmRBvcvFE5BB1HZKXtSFASDhdlz9zOYwxh8lDdnvmMOe/+5cdoEdg==",
"requires": {
"delayed-stream": "~1.0.0"
}
@@ -649,19 +710,6 @@
}
}
},
- "cross-spawn": {
- "version": "6.0.5",
- "resolved": "https://registry.npmjs.org/cross-spawn/-/cross-spawn-6.0.5.tgz",
- "integrity": "sha512-eTVLrBSt7fjbDygz805pMnstIs2VTBNkRm0qxZd+M7A5XDdxVRWO5MxGBXZhjY4cqLYLdtrGqRf8mBPmzwSpWQ==",
- "dev": true,
- "requires": {
- "nice-try": "^1.0.4",
- "path-key": "^2.0.1",
- "semver": "^5.5.0",
- "shebang-command": "^1.2.0",
- "which": "^1.2.9"
- }
- },
"dashdash": {
"version": "1.14.1",
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@@ -2235,7 +2150,7 @@
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- "integrity": "sha1-wNWmOycYgArY4esPpSachN1BhF4="
- },
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+ "version": "2.5.0",
+ "resolved": "https://registry.npmjs.org/tough-cookie/-/tough-cookie-2.5.0.tgz",
+ "integrity": "sha512-nlLsUzgm1kfLXSXfRZMc1KLAugd4hqJHDTvc2hDIwS3mZAfMEuMbc03SujMF+GEcpaX/qboeycw6iO8JwVv2+g==",
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- "psl": "^1.1.24",
- "punycode": "^1.4.1"
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"resolved": "https://registry.npmjs.org/send/-/send-0.16.2.tgz",
@@ -2325,6 +2229,15 @@
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}
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+ "serialize-javascript": {
+ "version": "6.0.0",
+ "resolved": "https://registry.npmjs.org/serialize-javascript/-/serialize-javascript-6.0.0.tgz",
+ "integrity": "sha512-Qr3TosvguFt8ePWqsvRfrKyQXIiW+nGbYpy8XK24NQHE83caxWt+mIymTT19DGFbNWNLfEwsrkSmN64lVWB9ag==",
+ "dev": true,
+ "requires": {
+ "randombytes": "^2.1.0"
+ }
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"resolved": "https://registry.npmjs.org/serve-static/-/serve-static-1.13.2.tgz",
@@ -2346,21 +2259,6 @@
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- "integrity": "sha1-RKrGW2lbAzmJaMOfNj/uXer98eo=",
- "dev": true,
- "requires": {
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- "shebang-regex": {
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- "integrity": "sha1-2kL0l0DAtC2yypcoVxyxkMmO/qM=",
- "dev": true
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@@ -2441,12 +2339,6 @@
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- "dev": true
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@@ -2533,12 +2425,6 @@
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- "integrity": "sha1-BOaSb2YolTVPPdAVIDYzuFcpfiw=",
- "dev": true
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- "integrity": "sha512-nOqH59deCq9SRHlxq1Aw85Jnt4w6KvLKqWVik6oA9ZklXLNIOlqg4F2yrT1MVaTjAqvVwdfeZ7w7aCvJD7ugkw==",
+ "version": "4.2.3",
+ "resolved": "https://registry.npmjs.org/string-width/-/string-width-4.2.3.tgz",
+ "integrity": "sha512-wKyQRQpjJ0sIp62ErSZdGsjMJWsap5oRNihHhu6G7JVO/9jIB6UyevL+tXuOqrng8j/cxKTWyWUwvSTriiZz/g==",
"dev": true,
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+ "resolved": "https://registry.npmjs.org/emoji-regex/-/emoji-regex-8.0.0.tgz",
+ "integrity": "sha512-MSjYzcWNOA0ewAHpz0MxpYFvwg6yjy1NG3xteoqz644VCo/RPgnr1/GGt+ic3iJTzQ8Eu3TdM14SawnVUmGE6A==",
+ "dev": true
+ },
+ "is-fullwidth-code-point": {
+ "version": "3.0.0",
+ "resolved": "https://registry.npmjs.org/is-fullwidth-code-point/-/is-fullwidth-code-point-3.0.0.tgz",
+ "integrity": "sha512-zymm5+u+sCsSWyD9qNaejV3DFvhCKclKdizYaJUuHA83RLjb7nSuGnddCHGv0hk+KY7BMAlsWeK4Ueg6EV6XQg==",
+ "dev": true
+ }
}
},
"string_decoder": {
@@ -2579,33 +2480,27 @@
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- "integrity": "sha1-qEeQIusaw2iocTibY1JixQXuNo8=",
+ "version": "6.0.1",
+ "resolved": "https://registry.npmjs.org/strip-ansi/-/strip-ansi-6.0.1.tgz",
+ "integrity": "sha512-Y38VPSHcqkFrCpFnQ9vuSXmquuv5oXOKpGeT6aGrr3o3Gc9AlVa6JBfUSOCnbxGGZF+/0ooI7KrPuUSztUdU5A==",
"dev": true,
"requires": {
- "ansi-regex": "^3.0.0"
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- "strip-eof": {
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- "resolved": "https://registry.npmjs.org/strip-eof/-/strip-eof-1.0.0.tgz",
- "integrity": "sha1-u0P/VZim6wXYm1n80SnJgzE2Br8=",
- "dev": true
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- "integrity": "sha1-PFMZQukIwml8DsNEhYwobHygpgo=",
+ "version": "3.1.1",
+ "resolved": "https://registry.npmjs.org/strip-json-comments/-/strip-json-comments-3.1.1.tgz",
+ "integrity": "sha512-6fPc+R4ihwqP6N/aIv2f1gMH8lOVtWQHoqC4yK6oSDVVocumAsfCqjkXnqiYMhmMwS/mEHLp7Vehlt3ql6lEig==",
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+ "version": "8.1.1",
+ "resolved": "https://registry.npmjs.org/supports-color/-/supports-color-8.1.1.tgz",
+ "integrity": "sha512-MpUEN2OodtUzxvKQl72cUF7RQ5EiHsGvSsVG0ia9c5RbWGL2CI4C7EpPS8UTBIplnlzZiNuV56w+FuNxy3ty2Q==",
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},
+ "to-regex-range": {
+ "version": "5.0.1",
+ "resolved": "https://registry.npmjs.org/to-regex-range/-/to-regex-range-5.0.1.tgz",
+ "integrity": "sha512-65P7iz6X5yEr1cwcgvQxbbIw7Uk3gOy5dIdtZ4rDveLqhrdJP+Li/Hx6tyK0NEb+2GCyneCMJiGqrADCSNk8sQ==",
+ "dev": true,
+ "requires": {
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@@ -2707,9 +2611,9 @@
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- "resolved": "https://registry.npmjs.org/uri-js/-/uri-js-4.2.2.tgz",
- "integrity": "sha512-KY9Frmirql91X2Qgjry0Wd4Y+YTdrdZheS8TFwvkbLWf/G5KNJDCh6pKL5OZctEW4+0Baa5idK2ZQuELRwPznQ==",
+ "version": "4.4.1",
+ "resolved": "https://registry.npmjs.org/uri-js/-/uri-js-4.4.1.tgz",
+ "integrity": "sha512-7rKUyy33Q1yc98pQ1DAmLtwX109F7TIfWlW1Ydo8Wl1ii1SeHieeh0HHfPeL2fMXK6z0s8ecKs9frCuLJvndBg==",
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@@ -2725,9 +2629,9 @@
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+ "version": "3.4.0",
+ "resolved": "https://registry.npmjs.org/uuid/-/uuid-3.4.0.tgz",
+ "integrity": "sha512-HjSDRw6gZE5JMggctHBcjVak08+KEVhSIiDzFnT9S9aegmp85S/bReBVTb4QTFaRNptJ9kuYaNhnbNEOkbKb/A=="
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@@ -2745,9 +2649,9 @@
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+ "resolved": "https://registry.npmjs.org/which/-/which-2.0.2.tgz",
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@@ -2758,59 +2662,46 @@
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- "dev": true,
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+ "workerpool": {
+ "version": "6.1.5",
+ "resolved": "https://registry.npmjs.org/workerpool/-/workerpool-6.1.5.tgz",
+ "integrity": "sha512-XdKkCK0Zqc6w3iTxLckiuJ81tiD/o5rBE/m+nXpRCB+/Sq4DqkfXZ/x0jW02DG1tGsfUGXbTJyZDP+eu67haSw==",
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- "integrity": "sha1-2Pw9KE3QV5T+hJc8rs3Rz4JP3YU=",
+ "version": "7.0.0",
+ "resolved": "https://registry.npmjs.org/wrap-ansi/-/wrap-ansi-7.0.0.tgz",
+ "integrity": "sha512-YVGIj2kamLSTxw6NsZjoBxfSwsn0ycdesmc4p+Q21c5zPuZ1pl+NfxVdxPtdHvmNVOQ6XSYG4AUtyt/Fi7D16Q==",
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- "integrity": "sha1-754xOG8DGn8NZDr4L95QxFfvAMs=",
+ "ansi-styles": {
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+ "resolved": "https://registry.npmjs.org/ansi-styles/-/ansi-styles-4.3.0.tgz",
+ "integrity": "sha512-zbB9rCJAT1rbjiVDb2hqKFHNYLxgtk8NURxZ3IZwD3F6NtxbXZQCnnSi1Lkx+IDohdPlFp222wVALIheZJQSEg==",
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- "integrity": "sha1-EYvfW4zcUaKn5w0hHgfisLmxB9M=",
+ "color-convert": {
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+ "resolved": "https://registry.npmjs.org/color-convert/-/color-convert-2.0.1.tgz",
+ "integrity": "sha512-RRECPsj7iu/xb5oKYcsFHSppFNnsj/52OVTRKb4zP5onXwVF3zVmmToNcOfGC+CRDpfK/U584fMg38ZHCaElKQ==",
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- }
+ "version": "20.2.4",
+ "resolved": "https://registry.npmjs.org/yargs-parser/-/yargs-parser-20.2.4.tgz",
+ "integrity": "sha512-WOkpgNhPTlE73h4VFAFsOnomJVaovO8VqLDzy5saChRBFQFBoMYirowyW+Q9HB4HFF4Z7VZTiG3iSzJJA29yRA==",
+ "dev": true
},
"yargs-unparser": {
- "version": "1.5.0",
- "resolved": "https://registry.npmjs.org/yargs-unparser/-/yargs-unparser-1.5.0.tgz",
- "integrity": "sha512-HK25qidFTCVuj/D1VfNiEndpLIeJN78aqgR23nL3y4N0U/91cOAzqfHlF8n2BvoNDcZmJKin3ddNSvOxSr8flw==",
+ "version": "2.0.0",
+ "resolved": "https://registry.npmjs.org/yargs-unparser/-/yargs-unparser-2.0.0.tgz",
+ "integrity": "sha512-7pRTIA9Qc1caZ0bZ6RYRGbHJthJWuakf+WmHK0rVeLkNrrGhfoabBNdue6kdINI6r4if7ocq9aD/n7xwKOdzOA==",
"dev": true,
"requires": {
- "flat": "^4.1.0",
- "lodash": "^4.17.11",
- "yargs": "^12.0.5"
+ "camelcase": "^6.0.0",
+ "decamelize": "^4.0.0",
+ "flat": "^5.0.2",
+ "is-plain-obj": "^2.1.0"
},
"dependencies": {
- "get-caller-file": {
- "version": "1.0.3",
- "resolved": "https://registry.npmjs.org/get-caller-file/-/get-caller-file-1.0.3.tgz",
- "integrity": "sha512-3t6rVToeoZfYSGd8YoLFR2DJkiQrIiUrGcjvFX2mDw3bn6k2OtwHN0TNCLbBO+w8qTvimhDkv+LSscbJY1vE6w==",
+ "camelcase": {
+ "version": "6.2.1",
+ "resolved": "https://registry.npmjs.org/camelcase/-/camelcase-6.2.1.tgz",
+ "integrity": "sha512-tVI4q5jjFV5CavAU8DXfza/TJcZutVKo/5Foskmsqcm0MsL91moHvwiGNnqaa2o6PF/7yT5ikDRcVcl8Rj6LCA==",
"dev": true
},
- "require-main-filename": {
- "version": "1.0.1",
- "resolved": "https://registry.npmjs.org/require-main-filename/-/require-main-filename-1.0.1.tgz",
- "integrity": "sha1-l/cXtp1IeE9fUmpsWqj/3aBVpNE=",
+ "decamelize": {
+ "version": "4.0.0",
+ "resolved": "https://registry.npmjs.org/decamelize/-/decamelize-4.0.0.tgz",
+ "integrity": "sha512-9iE1PgSik9HeIIw2JO94IidnE3eBoQrFJ3w7sFuzSX4DpmZ3v5sZpUiV5Swcf6mQEF+Y0ru8Neo+p+nyh2J+hQ==",
"dev": true
- },
- "yargs": {
- "version": "12.0.5",
- "resolved": "https://registry.npmjs.org/yargs/-/yargs-12.0.5.tgz",
- "integrity": "sha512-Lhz8TLaYnxq/2ObqHDql8dX8CJi97oHxrjUcYtzKbbykPtVW9WB+poxI+NM2UIzsMgNCZTIf0AQwsjK5yMAqZw==",
- "dev": true,
- "requires": {
- "cliui": "^4.0.0",
- "decamelize": "^1.2.0",
- "find-up": "^3.0.0",
- "get-caller-file": "^1.0.1",
- "os-locale": "^3.0.0",
- "require-directory": "^2.1.1",
- "require-main-filename": "^1.0.1",
- "set-blocking": "^2.0.0",
- "string-width": "^2.0.0",
- "which-module": "^2.0.0",
- "y18n": "^3.2.1 || ^4.0.0",
- "yargs-parser": "^11.1.1"
- }
- },
- "yargs-parser": {
- "version": "11.1.1",
- "resolved": "https://registry.npmjs.org/yargs-parser/-/yargs-parser-11.1.1.tgz",
- "integrity": "sha512-C6kB/WJDiaxONLJQnF8ccx9SEeoTTLek8RVbaOIsrAUS8VrBEXfmeSnCZxygc+XC2sNMBIwOOnfcxiynjHsVSQ==",
- "dev": true,
- "requires": {
- "camelcase": "^5.0.0",
- "decamelize": "^1.2.0"
- }
}
}
},
+ "yocto-queue": {
+ "version": "0.1.0",
+ "resolved": "https://registry.npmjs.org/yocto-queue/-/yocto-queue-0.1.0.tgz",
+ "integrity": "sha512-rVksvsnNCdJ/ohGc6xgPwyN8eheCxsiLM8mxuE/t/mOVqJewPuO1miLpTHQiRgTKCLexL4MeAFVagts7HmNZ2Q==",
+ "dev": true
+ },
"zip-stream": {
"version": "2.1.2",
"resolved": "https://registry.npmjs.org/zip-stream/-/zip-stream-2.1.2.tgz",
diff --git a/deploy/package.json b/deploy/package.json
index 04cdc908c505ae7a5d8663fbfae313f561b0be80..914ac299243285c90541f6525650d42661137fba 100644
--- a/deploy/package.json
+++ b/deploy/package.json
@@ -29,7 +29,7 @@
"passport": "^0.4.0",
"rate-limit-redis": "^2.1.0",
"redis": "^3.1.2",
- "request": "^2.88.0",
+ "request": "^2.88.2",
"showdown": "^1.9.1",
"soswrap": "^0.0.2",
"through2": "^3.0.1"
@@ -40,7 +40,7 @@
"cookie": "^0.4.0",
"cors": "^2.8.5",
"dotenv": "^6.2.0",
- "mocha": "^6.1.4",
+ "mocha": "^9.1.3",
"nock": "^12.0.3",
"sinon": "^8.0.2"
}
diff --git a/deploy/saneUrl/store.js b/deploy/saneUrl/store.js
index 9ef35e8408fd089bb7778ed02d68bd3e18fede58..7bf3132baee683e9a6445e160d84ea7afd3b142f 100644
--- a/deploy/saneUrl/store.js
+++ b/deploy/saneUrl/store.js
@@ -48,6 +48,7 @@ class GitlabSnippetStore {
'PRIVATE-TOKEN': this.token,
...headers
},
+ qs: { per_page: 1000 },
...opt
}, (err, resp, body) => {
if (err) return rj(err)
diff --git a/docs/releases/v2.6.1.md b/docs/releases/v2.6.1.md
new file mode 100644
index 0000000000000000000000000000000000000000..98808f013ee4e63b7d2f444c17b94c3c7cfec137
--- /dev/null
+++ b/docs/releases/v2.6.1.md
@@ -0,0 +1,5 @@
+# v2.6.1
+
+## Bugfix
+
+- Fixed perspective view orientation button colors
\ No newline at end of file
diff --git a/docs/releases/v2.6.2.md b/docs/releases/v2.6.2.md
new file mode 100644
index 0000000000000000000000000000000000000000..d8bcbca68aac547c800dfda61acce3b08247d19e
--- /dev/null
+++ b/docs/releases/v2.6.2.md
@@ -0,0 +1,16 @@
+# v2.6.2
+
+## Bugfixes
+
+- Added indication when annotations were overwritten (partial fix to #1128)
+
+## Under the hood stuff
+
+- update deploy depedencies
+- update deployment configurations
+- fixed some CSP issues
+- fixed favicons
+- added build debug messages
+- increment siibra-api version expectation
+- remove unused tests
+- update compressor image to 22.04
diff --git a/docs/releases/v2.6.3.md b/docs/releases/v2.6.3.md
new file mode 100644
index 0000000000000000000000000000000000000000..eb412372db38cd0f28fb4aabac6c2f2e56fab199
--- /dev/null
+++ b/docs/releases/v2.6.3.md
@@ -0,0 +1,6 @@
+# v2.6.3
+
+## Bugfixes
+
+- Fixed an issue where inter-space selection of parcellation was not possible.
+
diff --git a/docs/releases/v2.6.4.md b/docs/releases/v2.6.4.md
new file mode 100644
index 0000000000000000000000000000000000000000..bdbb00e0fbf336d60239bab7a067a151dee77fa2
--- /dev/null
+++ b/docs/releases/v2.6.4.md
@@ -0,0 +1,6 @@
+# v2.6.4
+
+## Bugfixes
+
+- Temporarily fixed an issue where saneurl queries were paginated
+
diff --git a/docs/releases/v2.6.5.md b/docs/releases/v2.6.5.md
new file mode 100644
index 0000000000000000000000000000000000000000..9cf83b085c6deffc754bbad8c84744256def20d7
--- /dev/null
+++ b/docs/releases/v2.6.5.md
@@ -0,0 +1,5 @@
+# v2.6.4
+
+## Feature
+
+- Re-enabled autoradiographs for receptor datasets
diff --git a/e2e/checklist.md b/e2e/checklist.md
index 3c0cbe0a538168ea49aeff84877386c05826459b..98d2f78311929c0bd3ecb9292d90981da7e83b25 100644
--- a/e2e/checklist.md
+++ b/e2e/checklist.md
@@ -2,7 +2,7 @@
**use incognito browser**
-[home page](https://siibra-explorer.apps.hbp.eu/staging/)
+[home page](https://atlases.ebrains.eu/viewer-staging/)
## General
@@ -44,9 +44,13 @@
- [ ] Explore in other templates exists, and has MNI152 and big brain
- [ ] clicking on the respective space will load julich 2.9 in that space
- [ ] the navigation should be preserved
+ - [ ] switching template/parc
+ - [ ] mni152 julich brain 29 (big brain) -> big brain julich brain 29
+ - [ ] mni152 julich brain 29 (cortical layer) -> big brain cortical layer
+ - [ ] mni152 long bundle (dismiss) -> mni152 julich brain 29
- [ ] in big brain v2.9 (or latest)
- [ ] high res hoc1, hoc2, hoc3, lam1-6 are visible
- - [ ] pli dataset [link](https://siibra-explorer.apps.hbp.eu/staging/?templateSelected=Big+Brain+%28Histology%29&parcellationSelected=Grey%2FWhite+matter&cNavigation=0.0.0.-W000.._eCwg.2-FUe3._-s_W.2_evlu..7LIx..1uaTK.Bq5o~.lKmo~..NBW&previewingDatasetFiles=%5B%7B%22datasetId%22%3A%22minds%2Fcore%2Fdataset%2Fv1.0.0%2Fb08a7dbc-7c75-4ce7-905b-690b2b1e8957%22%2C%22filename%22%3A%22Overlay+of+data+modalities%22%7D%5D)
+ - [ ] pli dataset [link](https://atlases.ebrains.eu/viewer-staging/?templateSelected=Big+Brain+%28Histology%29&parcellationSelected=Grey%2FWhite+matter&cNavigation=0.0.0.-W000.._eCwg.2-FUe3._-s_W.2_evlu..7LIx..1uaTK.Bq5o~.lKmo~..NBW&previewingDatasetFiles=%5B%7B%22datasetId%22%3A%22minds%2Fcore%2Fdataset%2Fv1.0.0%2Fb08a7dbc-7c75-4ce7-905b-690b2b1e8957%22%2C%22filename%22%3A%22Overlay+of+data+modalities%22%7D%5D)
- [ ] redirects fine
- [ ] shows fine
- [ ] fsaverage
@@ -56,9 +60,9 @@
- [ ] on hover, show correct region name(s)
- [ ] whole mesh loads
## saneURL
-- [ ] [saneUrl](https://siibra-explorer.apps.hbp.eu/staging/saneUrl/bigbrainGreyWhite) redirects to big brain
-- [ ] [saneUrl](https://siibra-explorer.apps.hbp.eu/staging/saneUrl/julichbrain) redirects to julich brain (colin 27)
-- [ ] [saneUrl](https://siibra-explorer.apps.hbp.eu/staging/saneUrl/whs4) redirects to waxholm v4
-- [ ] [saneUrl](https://siibra-explorer.apps.hbp.eu/staging/saneUrl/allen2017) redirects to allen 2017
-- [ ] [saneUrl](https://siibra-explorer.apps.hbp.eu/staging/saneUrl/mebrains) redirects to monkey
+- [ ] [saneUrl](https://atlases.ebrains.eu/viewer-staging/saneUrl/bigbrainGreyWhite) redirects to big brain
+- [ ] [saneUrl](https://atlases.ebrains.eu/viewer-staging/saneUrl/julichbrain) redirects to julich brain (colin 27)
+- [ ] [saneUrl](https://atlases.ebrains.eu/viewer-staging/saneUrl/whs4) redirects to waxholm v4
+- [ ] [saneUrl](https://atlases.ebrains.eu/viewer-staging/saneUrl/allen2017) redirects to allen 2017
+- [ ] [saneUrl](https://atlases.ebrains.eu/viewer-staging/saneUrl/mebrains) redirects to monkey
diff --git a/mkdocs.yml b/mkdocs.yml
index 95827211ee2faac6753b6dae9b4d023d6e716530..d56285fcb2696c7884fb90844282f9ba87e94d2b 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -16,13 +16,6 @@ markdown_extensions:
plugins:
- search
- # - errandkun:
- # extract_path: docs/autogen_images
- # external_resources:
- # - type: github
- # owner: fzj-inm1-bda
- # repo: interactive-viewer
- # workflow_name: e2e
pages:
- Home: 'index.md'
@@ -40,6 +33,11 @@ pages:
- Fetching datasets: 'advanced/datasets.md'
- Display non-atlas volumes: 'advanced/otherVolumes.md'
- Release notes:
+ - v2.6.5: 'releases/v2.6.5.md'
+ - v2.6.4: 'releases/v2.6.4.md'
+ - v2.6.3: 'releases/v2.6.3.md'
+ - v2.6.2: 'releases/v2.6.2.md'
+ - v2.6.1: 'releases/v2.6.1.md'
- v2.6.0: 'releases/v2.6.0.md'
- v2.5.8: 'releases/v2.5.8.md'
- v2.5.7: 'releases/v2.5.7.md'
diff --git a/package-lock.json b/package-lock.json
index f6e7585aebf12c0f8f457bf3ae570fa65b1098dd..411309acbba56f8527f9da524f518bbed3571a7f 100644
--- a/package-lock.json
+++ b/package-lock.json
@@ -1,6 +1,6 @@
{
"name": "interactive-viewer",
- "version": "2.5.0",
+ "version": "2.6.4",
"lockfileVersion": 1,
"requires": true,
"dependencies": {
@@ -15,26 +15,26 @@
}
},
"@angular-devkit/architect": {
- "version": "0.1202.7",
- "resolved": "https://registry.npmjs.org/@angular-devkit/architect/-/architect-0.1202.7.tgz",
- "integrity": "sha512-zqqw3h8jMDYsRrXUNY1J8xtUl6wmBO++yTka+CoEIFetNdLdoWmb5VpaA81i0aSBhXBgnBUUFvqZGdiI7BbV8A==",
+ "version": "0.1202.13",
+ "resolved": "https://registry.npmjs.org/@angular-devkit/architect/-/architect-0.1202.13.tgz",
+ "integrity": "sha512-LXgiidXwBgyWPqqWK4xR1/kCPQTMTzG5w+s7+LvENUZwbcdl6CKrOMjfgjo6WPr6yeq+WWQvPCD4pZ6nXRTm7A==",
"dev": true,
"requires": {
- "@angular-devkit/core": "12.2.7",
+ "@angular-devkit/core": "12.2.13",
"rxjs": "6.6.7"
}
},
"@angular-devkit/build-angular": {
- "version": "12.2.7",
- "resolved": "https://registry.npmjs.org/@angular-devkit/build-angular/-/build-angular-12.2.7.tgz",
- "integrity": "sha512-ZgbdmPEiJ8ShKg6CwNEuot1xCHTC68WfTr1ClUhvMvK9nsBydPdeKAYiqEho8gP4PuC0v3Hssuokfkqdb3Ms/A==",
+ "version": "12.2.13",
+ "resolved": "https://registry.npmjs.org/@angular-devkit/build-angular/-/build-angular-12.2.13.tgz",
+ "integrity": "sha512-iJ1P/RZ1hk2n/HtEqB5ohXvHa+Hf0BXShYskSGrn6/klcTb0eJTCREsFxHk7mNEmRIGPWkjbLAslqpPgwiagXg==",
"dev": true,
"requires": {
"@ampproject/remapping": "1.0.1",
- "@angular-devkit/architect": "0.1202.7",
- "@angular-devkit/build-optimizer": "0.1202.7",
- "@angular-devkit/build-webpack": "0.1202.7",
- "@angular-devkit/core": "12.2.7",
+ "@angular-devkit/architect": "0.1202.13",
+ "@angular-devkit/build-optimizer": "0.1202.13",
+ "@angular-devkit/build-webpack": "0.1202.13",
+ "@angular-devkit/core": "12.2.13",
"@babel/core": "7.14.8",
"@babel/generator": "7.14.8",
"@babel/helper-annotate-as-pure": "7.14.5",
@@ -46,7 +46,7 @@
"@babel/template": "7.14.5",
"@discoveryjs/json-ext": "0.5.3",
"@jsdevtools/coverage-istanbul-loader": "3.0.5",
- "@ngtools/webpack": "12.2.7",
+ "@ngtools/webpack": "12.2.13",
"ansi-colors": "4.1.1",
"babel-loader": "8.2.2",
"browserslist": "^4.9.1",
@@ -55,11 +55,11 @@
"circular-dependency-plugin": "5.2.2",
"copy-webpack-plugin": "9.0.1",
"core-js": "3.16.0",
- "critters": "0.0.10",
+ "critters": "0.0.12",
"css-loader": "6.2.0",
"css-minimizer-webpack-plugin": "3.0.2",
- "esbuild": "0.12.29",
- "esbuild-wasm": "0.12.29",
+ "esbuild": "0.13.8",
+ "esbuild-wasm": "0.13.8",
"find-cache-dir": "3.3.1",
"glob": "7.1.7",
"https-proxy-agent": "5.0.0",
@@ -69,7 +69,7 @@
"less-loader": "10.0.1",
"license-webpack-plugin": "2.3.20",
"loader-utils": "2.0.0",
- "mini-css-extract-plugin": "2.2.1",
+ "mini-css-extract-plugin": "2.4.2",
"minimatch": "3.0.4",
"open": "8.2.1",
"ora": "5.4.1",
@@ -103,11 +103,41 @@
},
"dependencies": {
"esbuild": {
- "version": "0.12.29",
- "resolved": "https://registry.npmjs.org/esbuild/-/esbuild-0.12.29.tgz",
- "integrity": "sha512-w/XuoBCSwepyiZtIRsKsetiLDUVGPVw1E/R3VTFSecIy8UR7Cq3SOtwKHJMFoVqqVG36aGkzh4e8BvpO1Fdc7g==",
+ "version": "0.13.8",
+ "resolved": "https://registry.npmjs.org/esbuild/-/esbuild-0.13.8.tgz",
+ "integrity": "sha512-A4af7G7YZLfG5OnARJRMtlpEsCkq/zHZQXewgPA864l9D6VjjbH1SuFYK/OSV6BtHwDGkdwyRrX0qQFLnMfUcw==",
"dev": true,
- "optional": true
+ "optional": true,
+ "requires": {
+ "esbuild-android-arm64": "0.13.8",
+ "esbuild-darwin-64": "0.13.8",
+ "esbuild-darwin-arm64": "0.13.8",
+ "esbuild-freebsd-64": "0.13.8",
+ "esbuild-freebsd-arm64": "0.13.8",
+ "esbuild-linux-32": "0.13.8",
+ "esbuild-linux-64": "0.13.8",
+ "esbuild-linux-arm": "0.13.8",
+ "esbuild-linux-arm64": "0.13.8",
+ "esbuild-linux-mips64le": "0.13.8",
+ "esbuild-linux-ppc64le": "0.13.8",
+ "esbuild-netbsd-64": "0.13.8",
+ "esbuild-openbsd-64": "0.13.8",
+ "esbuild-sunos-64": "0.13.8",
+ "esbuild-windows-32": "0.13.8",
+ "esbuild-windows-64": "0.13.8",
+ "esbuild-windows-arm64": "0.13.8"
+ }
+ },
+ "loader-utils": {
+ "version": "2.0.0",
+ "resolved": "https://registry.npmjs.org/loader-utils/-/loader-utils-2.0.0.tgz",
+ "integrity": "sha512-rP4F0h2RaWSvPEkD7BLDFQnvSf+nK+wr3ESUjNTyAGobqrijmW92zc+SO6d4p4B1wh7+B/Jg1mkQe5NYUEHtHQ==",
+ "dev": true,
+ "requires": {
+ "big.js": "^5.2.2",
+ "emojis-list": "^3.0.0",
+ "json5": "^2.1.2"
+ }
},
"postcss": {
"version": "8.3.6",
@@ -120,6 +150,12 @@
"source-map-js": "^0.6.2"
}
},
+ "source-map-js": {
+ "version": "0.6.2",
+ "resolved": "https://registry.npmjs.org/source-map-js/-/source-map-js-0.6.2.tgz",
+ "integrity": "sha512-/3GptzWzu0+0MBQFrDKzw/DvvMTUORvgY6k6jd/VS6iCR4RDTKWH6v6WPwQoUO8667uQEf9Oe38DxAYWY5F/Ug==",
+ "dev": true
+ },
"tslib": {
"version": "2.3.0",
"resolved": "https://registry.npmjs.org/tslib/-/tslib-2.3.0.tgz",
@@ -129,9 +165,9 @@
}
},
"@angular-devkit/build-optimizer": {
- "version": "0.1202.7",
- "resolved": "https://registry.npmjs.org/@angular-devkit/build-optimizer/-/build-optimizer-0.1202.7.tgz",
- "integrity": "sha512-/VelwjOjQGZvXLwCuWVJ3MaTb1x0/UKYAqooEUW3yFkv6uXfpCCWywrIBZ3mYrU+m5ZeTjhDY4EFEd2WtBSroA==",
+ "version": "0.1202.13",
+ "resolved": "https://registry.npmjs.org/@angular-devkit/build-optimizer/-/build-optimizer-0.1202.13.tgz",
+ "integrity": "sha512-XX6rX5+mAl+MiIJDvi5N5mBLWOoskhMJ5r/G1PEqv0CMMJSSw60zUTndjxfq/nrX0PtsV3j/aqHN4Sj0w/gumg==",
"dev": true,
"requires": {
"source-map": "0.7.3",
@@ -148,19 +184,19 @@
}
},
"@angular-devkit/build-webpack": {
- "version": "0.1202.7",
- "resolved": "https://registry.npmjs.org/@angular-devkit/build-webpack/-/build-webpack-0.1202.7.tgz",
- "integrity": "sha512-DuWr6jEB/CBlmU1D+n0Jo6BMtYokbpBG0PZtnyzSvcwglIWIhxzFbCC7HTnlEzed+bmCSui7LtlGtkYcpFFsGw==",
+ "version": "0.1202.13",
+ "resolved": "https://registry.npmjs.org/@angular-devkit/build-webpack/-/build-webpack-0.1202.13.tgz",
+ "integrity": "sha512-KafzGyHuU2gBKaSICfMTFP2niTYZ/46DKU94TQ0lCILdJZsj0NE5M/288LSCbYgu2c7srJKz+Rvb+JcYGxIZ1g==",
"dev": true,
"requires": {
- "@angular-devkit/architect": "0.1202.7",
+ "@angular-devkit/architect": "0.1202.13",
"rxjs": "6.6.7"
}
},
"@angular-devkit/core": {
- "version": "12.2.7",
- "resolved": "https://registry.npmjs.org/@angular-devkit/core/-/core-12.2.7.tgz",
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- "resolved": "https://registry.npmjs.org/nanocolors/-/nanocolors-0.1.12.tgz",
- "integrity": "sha512-2nMHqg1x5PU+unxX7PGY7AuYxl2qDx7PSrTRjizr8sxdd3l/3hBuWWaki62qmtYm2U5i4Z5E7GbjlyDFhs9/EQ==",
- "dev": true
- }
}
},
"symbol-observable": {
@@ -11229,23 +11523,22 @@
"dev": true
},
"table": {
- "version": "6.7.1",
- "resolved": "https://registry.npmjs.org/table/-/table-6.7.1.tgz",
- "integrity": "sha512-ZGum47Yi6KOOFDE8m223td53ath2enHcYLgOCjGr5ngu8bdIARQk6mN/wRMv4yMRcHnCSnHbCEha4sobQx5yWg==",
+ "version": "6.7.3",
+ "resolved": "https://registry.npmjs.org/table/-/table-6.7.3.tgz",
+ "integrity": "sha512-5DkIxeA7XERBqMwJq0aHZOdMadBx4e6eDoFRuyT5VR82J0Ycg2DwM6GfA/EQAhJ+toRTaS1lIdSQCqgrmhPnlw==",
"dev": true,
"requires": {
"ajv": "^8.0.1",
- "lodash.clonedeep": "^4.5.0",
"lodash.truncate": "^4.4.2",
"slice-ansi": "^4.0.0",
- "string-width": "^4.2.0",
- "strip-ansi": "^6.0.0"
+ "string-width": "^4.2.3",
+ "strip-ansi": "^6.0.1"
},
"dependencies": {
"ajv": {
- "version": "8.6.3",
- "resolved": "https://registry.npmjs.org/ajv/-/ajv-8.6.3.tgz",
- "integrity": "sha512-SMJOdDP6LqTkD0Uq8qLi+gMwSt0imXLSV080qFVwJCpH9U6Mb+SUGHAXM0KNbcBPguytWyvFxcHgMLe2D2XSpw==",
+ "version": "8.8.2",
+ "resolved": "https://registry.npmjs.org/ajv/-/ajv-8.8.2.tgz",
+ "integrity": "sha512-x9VuX+R/jcFj1DHo/fCp99esgGDWiHENrKxaCENuCxpoMCmAt/COCGVDwA7kleEpEzJjDnvh3yGoOuLu0Dtllw==",
"dev": true,
"requires": {
"fast-deep-equal": "^3.1.1",
@@ -11541,9 +11834,9 @@
"dev": true
},
"ua-parser-js": {
- "version": "0.7.28",
- "resolved": "https://registry.npmjs.org/ua-parser-js/-/ua-parser-js-0.7.28.tgz",
- "integrity": "sha512-6Gurc1n//gjp9eQNXjD9O3M/sMwVtN5S8Lv9bvOYBfKfDNiIIhqiyi01vMBO45u4zkDE420w/e0se7Vs+sIg+g==",
+ "version": "0.7.31",
+ "resolved": "https://registry.npmjs.org/ua-parser-js/-/ua-parser-js-0.7.31.tgz",
+ "integrity": "sha512-qLK/Xe9E2uzmYI3qLeOmI0tEOt+TBBQyUIAh4aAgU05FVYzeZrKUdkAZfBNVGRaHVgV0TDkdEngJSw/SyQchkQ==",
"dev": true
},
"unicode-canonical-property-names-ecmascript": {
@@ -11592,12 +11885,6 @@
"integrity": "sha1-sxxa6CVIRKOoKBVBzisEuGWnNP8=",
"dev": true
},
- "uniqs": {
- "version": "2.0.0",
- "resolved": "https://registry.npmjs.org/uniqs/-/uniqs-2.0.0.tgz",
- "integrity": "sha1-/+3ks2slKQaW5uFl1KWe25mOawI=",
- "dev": true
- },
"unique-filename": {
"version": "1.1.1",
"resolved": "https://registry.npmjs.org/unique-filename/-/unique-filename-1.1.1.tgz",
@@ -11760,12 +12047,6 @@
"integrity": "sha1-IpnwLG3tMNSllhsLn3RSShj2NPw=",
"dev": true
},
- "vendors": {
- "version": "1.0.4",
- "resolved": "https://registry.npmjs.org/vendors/-/vendors-1.0.4.tgz",
- "integrity": "sha512-/juG65kTL4Cy2su4P8HjtkTxk6VmJDiOPBufWniqQ6wknac6jNiXS9vU+hO3wgusiyqWlzTbVHi0dyJqRONg3w==",
- "dev": true
- },
"verror": {
"version": "1.10.0",
"resolved": "https://registry.npmjs.org/verror/-/verror-1.10.0.tgz",
@@ -11792,9 +12073,9 @@
"dev": true
},
"watchpack": {
- "version": "2.2.0",
- "resolved": "https://registry.npmjs.org/watchpack/-/watchpack-2.2.0.tgz",
- "integrity": "sha512-up4YAn/XHgZHIxFBVCdlMiWDj6WaLKpwVeGQk2I5thdYxF/KmF0aaz6TfJZ/hfl1h/XlcDr7k1KH7ThDagpFaA==",
+ "version": "2.3.0",
+ "resolved": "https://registry.npmjs.org/watchpack/-/watchpack-2.3.0.tgz",
+ "integrity": "sha512-MnN0Q1OsvB/GGHETrFeZPQaOelWh/7O+EiFlj8sM9GPjtQkis7k01aAxrg/18kTfoIVcLL+haEVFlXDaSRwKRw==",
"dev": true,
"requires": {
"glob-to-regexp": "^0.4.1",
@@ -11852,9 +12133,9 @@
},
"dependencies": {
"webpack-sources": {
- "version": "3.2.1",
- "resolved": "https://registry.npmjs.org/webpack-sources/-/webpack-sources-3.2.1.tgz",
- "integrity": "sha512-t6BMVLQ0AkjBOoRTZgqrWm7xbXMBzD+XDq2EZ96+vMfn3qKgsvdXZhbPZ4ElUOpdv4u+iiGe+w3+J75iy/bYGA==",
+ "version": "3.2.2",
+ "resolved": "https://registry.npmjs.org/webpack-sources/-/webpack-sources-3.2.2.tgz",
+ "integrity": "sha512-cp5qdmHnu5T8wRg2G3vZZHoJPN14aqQ89SyQ11NpGH5zEMDCclt49rzo+MaRazk7/UeILhAI+/sEtcM+7Fr0nw==",
"dev": true
}
}
@@ -12024,11 +12305,7 @@
"resolved": "https://registry.npmjs.org/fsevents/-/fsevents-1.2.13.tgz",
"integrity": "sha512-oWb1Z6mkHIskLzEJ/XWX0srkpkTQ7vaopMQkyaEIoq0fmtFVxOthb8cCxeT+p3ynTdkk/RZwbgG4brR5BeWECw==",
"dev": true,
- "optional": true,
- "requires": {
- "bindings": "^1.5.0",
- "nan": "^2.12.1"
- }
+ "optional": true
},
"glob-parent": {
"version": "3.1.0",
@@ -12102,9 +12379,9 @@
}
},
"mime": {
- "version": "2.5.2",
- "resolved": "https://registry.npmjs.org/mime/-/mime-2.5.2.tgz",
- "integrity": "sha512-tqkh47FzKeCPD2PUiPB6pkbMzsCasjxAfC62/Wap5qrUWcb+sFasXUC5I3gYM5iBM8v/Qpn4UK0x+j0iHyFPDg==",
+ "version": "2.6.0",
+ "resolved": "https://registry.npmjs.org/mime/-/mime-2.6.0.tgz",
+ "integrity": "sha512-USPkMeET31rOMiarsBNIHZKLGgvKc/LrjofAnBlOttf5ajRvqiRA8QsenbcooctK6d6Ts6aqZXBA+XbkKthiQg==",
"dev": true
},
"mkdirp": {
@@ -12302,39 +12579,12 @@
"integrity": "sha1-2e8H3Od7mQK4o6j6SzHD4/fm6Ho="
},
"wide-align": {
- "version": "1.1.3",
- "resolved": "https://registry.npmjs.org/wide-align/-/wide-align-1.1.3.tgz",
- "integrity": "sha512-QGkOQc8XL6Bt5PwnsExKBPuMKBxnGxWWW3fU55Xt4feHozMUhdUMaBCk290qpm/wG5u/RSKzwdAC4i51YigihA==",
+ "version": "1.1.5",
+ "resolved": "https://registry.npmjs.org/wide-align/-/wide-align-1.1.5.tgz",
+ "integrity": "sha512-eDMORYaPNZ4sQIuuYPDHdQvf4gyCF9rEEV/yPxGfwPkRodwEgiMUUXTx/dex+Me0wxx53S+NgUHaP7y3MGlDmg==",
"dev": true,
"requires": {
- "string-width": "^1.0.2 || 2"
- },
- "dependencies": {
- "ansi-regex": {
- "version": "3.0.0",
- "resolved": "https://registry.npmjs.org/ansi-regex/-/ansi-regex-3.0.0.tgz",
- "integrity": "sha1-7QMXwyIGT3lGbAKWa922Bas32Zg=",
- "dev": true
- },
- "string-width": {
- "version": "2.1.1",
- "resolved": "https://registry.npmjs.org/string-width/-/string-width-2.1.1.tgz",
- "integrity": "sha512-nOqH59deCq9SRHlxq1Aw85Jnt4w6KvLKqWVik6oA9ZklXLNIOlqg4F2yrT1MVaTjAqvVwdfeZ7w7aCvJD7ugkw==",
- "dev": true,
- "requires": {
- "is-fullwidth-code-point": "^2.0.0",
- "strip-ansi": "^4.0.0"
- }
- },
- "strip-ansi": {
- "version": "4.0.0",
- "resolved": "https://registry.npmjs.org/strip-ansi/-/strip-ansi-4.0.0.tgz",
- "integrity": "sha1-qEeQIusaw2iocTibY1JixQXuNo8=",
- "dev": true,
- "requires": {
- "ansi-regex": "^3.0.0"
- }
- }
+ "string-width": "^1.0.2 || 2 || 3 || 4"
}
},
"wildcard": {
diff --git a/package.json b/package.json
index c9e41e939e48afb2cd1edaa045ce9fc801eb10ad..4ef7b728e472e70f049ec71e0eb77e7893154581 100644
--- a/package.json
+++ b/package.json
@@ -1,6 +1,6 @@
{
"name": "interactive-viewer",
- "version": "2.6.0",
+ "version": "2.6.5",
"description": "HBP interactive atlas viewer. Integrating KG query, dataset previews & more. Based on humanbrainproject/nehuba & google/neuroglancer. Built with angular",
"scripts": {
"build-aot": "ng build && node ./third_party/matomo/processMatomo.js",
@@ -20,9 +20,9 @@
"author": "FZJ-INM1-BDA <inm1-bda@fz-juelich.de>",
"license": "apache-2.0",
"devDependencies": {
- "@angular-devkit/build-angular": "~12.2.1",
- "@angular/cli": "~12.2.1",
- "@angular/compiler-cli": "~12.2.0",
+ "@angular-devkit/build-angular": "^12.2.13",
+ "@angular/cli": "^12.2.13",
+ "@angular/compiler-cli": "^12.2.13",
"@types/jasmine": "~3.8.0",
"@types/node": "^12.11.1",
"@typescript-eslint/eslint-plugin": "^4.29.2",
diff --git a/src/res/favicons/favicon-128-dark.svg b/src/assets/favicons/favicon-128-dark.svg
similarity index 100%
rename from src/res/favicons/favicon-128-dark.svg
rename to src/assets/favicons/favicon-128-dark.svg
diff --git a/src/res/favicons/favicon-128-light.png b/src/assets/favicons/favicon-128-light.png
similarity index 100%
rename from src/res/favicons/favicon-128-light.png
rename to src/assets/favicons/favicon-128-light.png
diff --git a/src/res/favicons/favicon-128-light.svg b/src/assets/favicons/favicon-128-light.svg
similarity index 100%
rename from src/res/favicons/favicon-128-light.svg
rename to src/assets/favicons/favicon-128-light.svg
diff --git a/src/atlasComponents/regionalFeatures/bsFeatures/genericInfo/genericInfoCmp/genericInfo.component.ts b/src/atlasComponents/regionalFeatures/bsFeatures/genericInfo/genericInfoCmp/genericInfo.component.ts
index ceec64a21e4ab1c7fef613f11c76ea2f8bacf08f..ca0d7c57c1c17a4fe011b05d05bd5d1cea13f6f5 100644
--- a/src/atlasComponents/regionalFeatures/bsFeatures/genericInfo/genericInfoCmp/genericInfo.component.ts
+++ b/src/atlasComponents/regionalFeatures/bsFeatures/genericInfo/genericInfoCmp/genericInfo.component.ts
@@ -1,4 +1,4 @@
-import { AfterViewInit, Component, Inject, Input, OnChanges, OnDestroy, Optional, TemplateRef, ViewChild, ViewContainerRef, ViewRef } from "@angular/core";
+import { AfterViewInit, ChangeDetectorRef, Component, Inject, Input, OnChanges, OnDestroy, Optional, TemplateRef, ViewChild, ViewContainerRef, ViewRef } from "@angular/core";
import { BsRegionInputBase } from "../../bsRegionInputBase";
import { KG_REGIONAL_FEATURE_KEY, TBSDetail, UNDER_REVIEW } from "../../kgRegionalFeature/type";
import { ARIA_LABELS, CONST } from 'common/constants'
@@ -69,6 +69,7 @@ export class GenericInfoCmp extends BsRegionInputBase implements OnChanges, Afte
constructor(
svc: BsFeatureService,
+ private cdr: ChangeDetectorRef,
@Optional() @Inject(MAT_DIALOG_DATA) data: TInjectableData
){
super(svc)
@@ -130,6 +131,7 @@ export class GenericInfoCmp extends BsRegionInputBase implements OnChanges, Afte
},
() => {
this.loadingFlag = false
+ this.cdr.markForCheck()
}
)
}
diff --git a/src/atlasComponents/regionalFeatures/bsFeatures/receptor/ar/autoradiograph.component.ts b/src/atlasComponents/regionalFeatures/bsFeatures/receptor/ar/autoradiograph.component.ts
index bb28ba3fa4847ffa13101fcae7c1ed25cea73fde..83054ac26c45903d6e5cef7c64015a57454f2cf1 100644
--- a/src/atlasComponents/regionalFeatures/bsFeatures/receptor/ar/autoradiograph.component.ts
+++ b/src/atlasComponents/regionalFeatures/bsFeatures/receptor/ar/autoradiograph.component.ts
@@ -1,8 +1,9 @@
-import { Component, Input, OnChanges } from "@angular/core";
+import { Component, ElementRef, Input, OnChanges, ViewChild } from "@angular/core";
import { BsFeatureReceptorBase } from "../base";
import { CONST } from 'common/constants'
import { TBSDetail } from "../type";
import { environment } from 'src/environments/environment'
+import { AtlasWorkerService } from "src/atlasViewer/atlasViewer.workerService.service";
const { RECEPTOR_AR_CAPTION } = CONST
@@ -27,12 +28,18 @@ export class BsFeatureReceptorAR extends BsFeatureReceptorBase implements OnChan
@Input()
bsLabel: string
- public imgUrl: string
+ @ViewChild('arContainer', { read: ElementRef })
+ arContainer: ElementRef
- constructor(){
+ private renderBuffer: Uint8ClampedArray
+ private width: number
+ private height: number
+ private pleaseRender = false
+
+ constructor(private worker: AtlasWorkerService){
super()
}
- ngOnChanges(){
+ async ngOnChanges(){
this.error = null
this.urls = []
if (!this.bsFeature) {
@@ -45,16 +52,69 @@ export class BsFeatureReceptorAR extends BsFeatureReceptorBase implements OnChan
}
try {
- const url = this.bsFeature.__data.__autoradiographs[this.bsLabel]
-
- if (!url) throw new Error(`autoradiograph cannot be found`)
- this.urls = [{ url }]
- const query = url.replace('https://object.cscs.ch/v1', '')
- this.imgUrl = `${this.DS_PREVIEW_URL}/imageProxy/v1?u=${encodeURIComponent(query)}`
-
+ const {
+ "x-channel": channel,
+ "x-height": height,
+ "x-width": width,
+ content_type: contentType,
+ content_encoding: contentEncoding,
+ content,
+ } = this.bsFeature.__data.__autoradiographs[this.bsLabel]
+
+ if (contentType !== "application/octet-stream") {
+ throw new Error(`contentType expected to be application/octet-stream, but is instead ${contentType}`)
+ }
+ if (contentEncoding !== "gzip; base64") {
+ throw new Error(`contentEncoding expected to be gzip; base64, but is ${contentEncoding} instead.`)
+ }
+
+ const bin = atob(content)
+ const { pako } = (window as any).export_nehuba
+ const uint8array: Uint8Array = pako.inflate(bin)
+
+ this.width = width
+ this.height = height
+
+ const rgbaBuffer = await this.worker.sendMessage({
+ method: "PROCESS_TYPED_ARRAY",
+ param: {
+ inputArray: uint8array,
+ width,
+ height,
+ channel
+ },
+ transfers: [ uint8array.buffer ]
+ })
+
+ this.renderBuffer = rgbaBuffer.result.buffer
+ this.renderCanvas()
} catch (e) {
this.error = e.toString()
}
-
+ }
+
+ private renderCanvas(){
+ if (!this.arContainer) {
+ this.pleaseRender = true
+ return
+ }
+
+ const arContainer = (this.arContainer.nativeElement as HTMLElement)
+ while (arContainer.firstChild) {
+ arContainer.removeChild(arContainer.firstChild)
+ }
+
+ const canvas = document.createElement("canvas")
+ canvas.height = this.height
+ canvas.width = this.width
+ arContainer.appendChild(canvas)
+ const ctx = canvas.getContext("2d")
+ const imgData = ctx.createImageData(this.width, this.height)
+ imgData.data.set(this.renderBuffer)
+ ctx.putImageData(imgData, 0, 0)
+ }
+
+ ngAfterViewChecked(){
+ if (this.pleaseRender) this.renderCanvas()
}
}
\ No newline at end of file
diff --git a/src/atlasComponents/regionalFeatures/bsFeatures/receptor/ar/autoradiograph.style.css b/src/atlasComponents/regionalFeatures/bsFeatures/receptor/ar/autoradiograph.style.css
index 523e0a8d190409673b7c3b5d74a28d519554f1eb..c7ebabfec67ff4346377d1dfed4a4ce63a40c066 100644
--- a/src/atlasComponents/regionalFeatures/bsFeatures/receptor/ar/autoradiograph.style.css
+++ b/src/atlasComponents/regionalFeatures/bsFeatures/receptor/ar/autoradiograph.style.css
@@ -1,4 +1,5 @@
-.ar-container > img
+/* canvas created by createElement does not have encapsulation applied */
+.ar-container >>> canvas
{
width: 100%;
}
\ No newline at end of file
diff --git a/src/atlasComponents/regionalFeatures/bsFeatures/receptor/ar/autoradiograph.template.html b/src/atlasComponents/regionalFeatures/bsFeatures/receptor/ar/autoradiograph.template.html
index 1714d15fa96583c3aa2fcd4c19a474c5d42a6936..ad467adc5a5f15bf37343c49a0c02fbb96a2c4d7 100644
--- a/src/atlasComponents/regionalFeatures/bsFeatures/receptor/ar/autoradiograph.template.html
+++ b/src/atlasComponents/regionalFeatures/bsFeatures/receptor/ar/autoradiograph.template.html
@@ -16,7 +16,6 @@
<figcaption class="text-muted">
Autoradiograph: {{ RECEPTOR_AR_CAPTION }}
</figcaption>
- <div class="ar-container">
- <img [src]="imgUrl">
+ <div class="ar-container" #arContainer>
</div>
</figure>
diff --git a/src/atlasComponents/regionalFeatures/bsFeatures/receptor/entry/entry.component.ts b/src/atlasComponents/regionalFeatures/bsFeatures/receptor/entry/entry.component.ts
index 8acaa8e680f108574e319b3eb5d032b69f70de24..33bc2bbde0ce20039d5bcf33de72782da242cc21 100644
--- a/src/atlasComponents/regionalFeatures/bsFeatures/receptor/entry/entry.component.ts
+++ b/src/atlasComponents/regionalFeatures/bsFeatures/receptor/entry/entry.component.ts
@@ -1,12 +1,11 @@
-import { Component, Inject, OnDestroy, Optional } from "@angular/core";
-import { Observable, of, Subject, Subscription } from "rxjs";
+import { ChangeDetectorRef, Component, Inject, OnDestroy, Optional } from "@angular/core";
+import { BehaviorSubject, Observable, of, Subscription } from "rxjs";
import { filter, map, shareReplay, startWith, switchMap, tap } from "rxjs/operators";
import { BsRegionInputBase } from "../../bsRegionInputBase";
import { REGISTERED_FEATURE_INJECT_DATA } from "../../constants";
import { BsFeatureService, TFeatureCmpInput } from "../../service";
import { TBSDetail } from "../type";
import { ARIA_LABELS } from 'common/constants'
-import { isPr } from "../profile/profile.component";
@Component({
selector: 'bs-features-receptor-entry',
@@ -21,7 +20,7 @@ export class BsFeatureReceptorEntry extends BsRegionInputBase implements OnDestr
private sub: Subscription[] = []
public ARIA_LABELS = ARIA_LABELS
- private selectedREntryId$ = new Subject<string>()
+ private selectedREntryId$ = new BehaviorSubject<string>(null)
private _selectedREntryId: string
set selectedREntryId(id: string){
this.selectedREntryId$.next(id)
@@ -50,13 +49,6 @@ export class BsFeatureReceptorEntry extends BsRegionInputBase implements OnDestr
public receptorsSummary$ = this.region$.pipe(
filter(v => !!v),
switchMap(() => this.getFeatureInstancesList('ReceptorDistribution')),
- tap(arr => {
- if (arr && arr.length > 0) {
- this.selectedREntryId = arr[0]['@id']
- } else {
- this.selectedREntryId = null
- }
- }),
startWith([]),
shareReplay(1),
)
@@ -75,11 +67,21 @@ export class BsFeatureReceptorEntry extends BsRegionInputBase implements OnDestr
constructor(
svc: BsFeatureService,
+ cdr: ChangeDetectorRef,
@Optional() @Inject(REGISTERED_FEATURE_INJECT_DATA) data: TFeatureCmpInput
){
super(svc, data)
this.sub.push(
- this.selectedReceptor$.subscribe()
+ this.selectedReceptor$.subscribe(() => {
+ cdr.markForCheck()
+ }),
+ this.receptorsSummary$.subscribe(arr => {
+ if (arr && arr.length > 0) {
+ this.selectedREntryId = arr[0]['@id']
+ } else {
+ this.selectedREntryId = null
+ }
+ })
)
}
}
diff --git a/src/atlasComponents/regionalFeatures/bsFeatures/receptor/entry/entry.template.html b/src/atlasComponents/regionalFeatures/bsFeatures/receptor/entry/entry.template.html
index 813c489a6f2e2e054ed1019ebc36d5dc6ef2388c..48a24c834f0ef7e943434a6242c12fe49b0f5b91 100644
--- a/src/atlasComponents/regionalFeatures/bsFeatures/receptor/entry/entry.template.html
+++ b/src/atlasComponents/regionalFeatures/bsFeatures/receptor/entry/entry.template.html
@@ -8,8 +8,11 @@
</mat-option>
</mat-select>
-<ng-container *ngIf="selectedReceptor$ | async as selectedRec">
+<ng-template [ngIf]="!(selectedReceptor$ | async)">
+ <spinner-cmp></spinner-cmp>
+</ng-template>
+<ng-template let-selectedRec [ngIf]="selectedReceptor$ | async">
<bs-features-receptor-fingerprint
(onSelectReceptor)="onSelectReceptor($event)"
[bsFeature]="selectedRec">
@@ -44,4 +47,4 @@
</bs-features-receptor-autoradiograph>
</ng-template>
-</ng-container>
+</ng-template>
diff --git a/src/atlasComponents/regionalFeatures/bsFeatures/receptor/type.ts b/src/atlasComponents/regionalFeatures/bsFeatures/receptor/type.ts
index 6d3222c8f78d086602d5bb2dccb91257bb11de6d..9ef1efe8b17727ded7f382784c035d780d323fc6 100644
--- a/src/atlasComponents/regionalFeatures/bsFeatures/receptor/type.ts
+++ b/src/atlasComponents/regionalFeatures/bsFeatures/receptor/type.ts
@@ -47,7 +47,14 @@ export type TBSDetail = TBSSummary & {
[key: string]: TProfile
}
__autoradiographs: {
- [key: string]: string
+ [key: string]: {
+ content_type: string
+ content_encoding: string
+ ['x-width']: number
+ ['x-height']: number
+ ['x-channel']: number
+ content: string
+ }
}
__fingerprint: TBSFingerprint
}
diff --git a/src/atlasComponents/regionalFeatures/bsFeatures/regionalFeatureWrapper/regionalFeatureWrapper.component.ts b/src/atlasComponents/regionalFeatures/bsFeatures/regionalFeatureWrapper/regionalFeatureWrapper.component.ts
index 72d4595fade4fec861614188df507ba3d5a42b56..76a2ad1f2f9bdffbbb598992d542989a48127279 100644
--- a/src/atlasComponents/regionalFeatures/bsFeatures/regionalFeatureWrapper/regionalFeatureWrapper.component.ts
+++ b/src/atlasComponents/regionalFeatures/bsFeatures/regionalFeatureWrapper/regionalFeatureWrapper.component.ts
@@ -2,7 +2,7 @@ import { Component, ComponentFactory, ComponentFactoryResolver, Inject, Injector
import { IBSSummaryResponse, TContextedFeature, TRegion } from "../type";
import { BsFeatureService, TFeatureCmpInput } from "../service";
import { combineLatest, Observable, Subject } from "rxjs";
-import { debounceTime, map, shareReplay, startWith, tap } from "rxjs/operators";
+import { debounceTime, map, shareReplay, startWith } from "rxjs/operators";
import { REGISTERED_FEATURE_INJECT_DATA } from "../constants";
import { ARIA_LABELS } from 'common/constants'
import {
diff --git a/src/atlasComponents/uiSelectors/atlasLayerSelector/atlasLayerSelector.component.spec.ts b/src/atlasComponents/uiSelectors/atlasLayerSelector/atlasLayerSelector.component.spec.ts
new file mode 100644
index 0000000000000000000000000000000000000000..730f7b258819bf92a3a678976bead30a75817452
--- /dev/null
+++ b/src/atlasComponents/uiSelectors/atlasLayerSelector/atlasLayerSelector.component.spec.ts
@@ -0,0 +1,100 @@
+import { CommonModule } from "@angular/common"
+import { ComponentFixture, TestBed } from "@angular/core/testing"
+import { NoopAnimationsModule } from "@angular/platform-browser/animations"
+import { MockStore, provideMockStore } from "@ngrx/store/testing"
+import { ComponentsModule } from "src/components"
+import { viewerStateSelectTemplateWithId, viewerStateToggleLayer } from "src/services/state/viewerState.store.helper"
+import { AngularMaterialModule } from "src/sharedModules"
+import { QuickTourModule } from "src/ui/quickTour"
+import { GetGroupedParcPipe } from "../pipes/getGroupedParc.pipe"
+import { GetIndividualParcPipe } from "../pipes/getIndividualParc.pipe"
+import { GetNonbaseParcPipe } from "../pipes/getNonBaseParc.pipe"
+import { AtlasLayerSelector } from "./atlasLayerSelector.component"
+
+describe("> atlasLayerSelector.component.ts", () => {
+ describe("> AtlasLayerSelector", () => {
+ let fixture: ComponentFixture<AtlasLayerSelector>
+ beforeEach(async () => {
+ await TestBed.configureTestingModule({
+ imports: [
+ CommonModule,
+ AngularMaterialModule,
+ NoopAnimationsModule,
+ QuickTourModule,
+ ComponentsModule,
+ ],
+ declarations: [
+ AtlasLayerSelector,
+ GetIndividualParcPipe,
+ GetNonbaseParcPipe,
+ GetGroupedParcPipe,
+ ],
+ providers: [
+ provideMockStore()
+ ]
+ }).compileComponents()
+ })
+
+ it("> can be init", () => {
+ fixture = TestBed.createComponent(AtlasLayerSelector)
+ expect(fixture).toBeTruthy()
+ })
+
+ describe("> methods", () => {
+ beforeEach(() => {
+ fixture = TestBed.createComponent(AtlasLayerSelector)
+ })
+ describe("> selectParcellationWithName", () => {
+ let tmplSupportParcPipeTransform: jasmine.Spy
+ let storeDispatchSpy: jasmine.Spy
+ const dummySelectedTmpl = {
+ "this": "obj"
+ }
+ const dummyParc = {
+ "foo": "bar",
+ "availableIn": [{
+ "baz": "yoo"
+ }]
+ }
+ beforeEach(() => {
+ tmplSupportParcPipeTransform = spyOn(fixture.componentInstance['currTmplSupportParcPipe'], 'transform')
+ const store = TestBed.inject(MockStore)
+ storeDispatchSpy = spyOn(store, 'dispatch')
+ fixture.componentInstance['selectedTemplate'] = dummySelectedTmpl
+ })
+ afterEach(() => {
+ if (tmplSupportParcPipeTransform) {
+ tmplSupportParcPipeTransform.calls.reset()
+ }
+ })
+ it("> calls pipe.transform", () => {
+ tmplSupportParcPipeTransform.and.returnValue(true)
+ fixture.componentInstance.selectParcellationWithName(dummyParc)
+ expect(tmplSupportParcPipeTransform).toHaveBeenCalledWith(dummySelectedTmpl, dummyParc)
+ expect(storeDispatchSpy).toHaveBeenCalledTimes(1)
+ })
+
+ const tmplChgReqParam = [true, false]
+
+ for (const tmplChgReq of tmplChgReqParam) {
+ describe(`> tmplChgReq: ${tmplChgReq}`, () => {
+ it("> expect the correct type of method to be called", () => {
+ tmplSupportParcPipeTransform.and.returnValue(!tmplChgReq)
+ fixture.componentInstance.selectParcellationWithName(dummyParc)
+ const allArgs = storeDispatchSpy.calls.allArgs()
+ expect(allArgs.length).toEqual(1)
+ expect(allArgs[0].length).toEqual(1)
+ const action = allArgs[0][0]
+
+ const expectedAction = tmplChgReq
+ ? viewerStateSelectTemplateWithId
+ : viewerStateToggleLayer
+
+ expect(action.type).toEqual(expectedAction.type)
+ })
+ })
+ }
+ })
+ })
+ })
+})
diff --git a/src/atlasComponents/uiSelectors/atlasLayerSelector/atlasLayerSelector.component.ts b/src/atlasComponents/uiSelectors/atlasLayerSelector/atlasLayerSelector.component.ts
index 1752a7d5f686fbd441993f3a33898f9b194b0744..9fbca8cce700ba9ef5bef01581a618e451308df3 100644
--- a/src/atlasComponents/uiSelectors/atlasLayerSelector/atlasLayerSelector.component.ts
+++ b/src/atlasComponents/uiSelectors/atlasLayerSelector/atlasLayerSelector.component.ts
@@ -134,12 +134,13 @@ export class AtlasLayerSelector implements OnInit, OnDestroy {
private currTmplSupportParcPipe = new CurrentTmplSupportsParcPipe()
selectParcellationWithName(layer: any) {
- const tmplChangeReq = this.currTmplSupportParcPipe.transform(this.selectedTemplate, layer)
+ const tmplChangeReq = !this.currTmplSupportParcPipe.transform(this.selectedTemplate, layer)
if (!tmplChangeReq) {
this.store$.dispatch(
viewerStateToggleLayer({ payload: layer })
)
} else {
+ this.showOverlayIntent$.next(true)
this.store$.dispatch(
viewerStateSelectTemplateWithId({
payload: layer.availableIn[0],
diff --git a/src/atlasComponents/uiSelectors/module.ts b/src/atlasComponents/uiSelectors/module.ts
index 384dc294ca684560a8d8b0cf7f71d85b7fb488f4..b6994ea3003f3dbe9815b2986507cd7fdeea20a5 100644
--- a/src/atlasComponents/uiSelectors/module.ts
+++ b/src/atlasComponents/uiSelectors/module.ts
@@ -10,7 +10,7 @@ import { AtlaslayerTooltipPipe } from "./pipes/atlasLayerTooltip.pipe";
import { ComponentsModule } from "src/components";
import { GetNonbaseParcPipe } from "./pipes/getNonBaseParc.pipe";
import { GetIndividualParcPipe } from "./pipes/getIndividualParc.pipe";
-import { getGroupedParcPipe } from "./pipes/getGroupedParc.pipe";
+import { GetGroupedParcPipe } from "./pipes/getGroupedParc.pipe";
import { CurrentTmplSupportsParcPipe } from "./pipes/currTmplSupportsParc.pipe";
import { GroupParcSelectedPipe } from "./pipes/groupParcSelected.pipe";
import { GetPreviewUrlPipe } from "./pipes/getPreviewUrl.pipe";
@@ -36,7 +36,7 @@ import { SiibraExplorerTemplateModule } from "../template";
AtlaslayerTooltipPipe,
GetNonbaseParcPipe,
GetIndividualParcPipe,
- getGroupedParcPipe,
+ GetGroupedParcPipe,
CurrentTmplSupportsParcPipe,
GroupParcSelectedPipe,
CurrParcSupportsTmplPipe,
diff --git a/src/atlasComponents/uiSelectors/pipes/currParcSupportsTmpl.pipe.ts b/src/atlasComponents/uiSelectors/pipes/currParcSupportsTmpl.pipe.ts
index 77fd66327ee0a4fa5bd004d46474d9ff5a95fb0a..dcdf13d404ba747a5ce65f9f1bbe6fb08189b196 100644
--- a/src/atlasComponents/uiSelectors/pipes/currParcSupportsTmpl.pipe.ts
+++ b/src/atlasComponents/uiSelectors/pipes/currParcSupportsTmpl.pipe.ts
@@ -12,7 +12,7 @@ export class CurrParcSupportsTmplPipe implements PipeTransform{
* buggy. says julich brain v290 is not supported in fsaverage
* related to https://github.com/FZJ-INM1-BDA/siibra-python/issues/98
*/
- const parcSupportTmpl = (p: any) => !!(tmpl.availableIn || []).find(tmplP => tmplP['@id'] === p['@id'])
+ const parcSupportTmpl = (p: any) => !!(tmpl.availableIn || []).find(tmplP => tmplP['@id'] === p && p['@id'])
return Array.isArray(parc)
? parc.some(parcSupportTmpl)
: parcSupportTmpl(parc)
diff --git a/src/atlasComponents/uiSelectors/pipes/getGroupedParc.pipe.ts b/src/atlasComponents/uiSelectors/pipes/getGroupedParc.pipe.ts
index 683d9d7904e588d64d734118723b60f577f20b7b..cd98f91a417520f57af7f9ae9952ffd134716a8f 100644
--- a/src/atlasComponents/uiSelectors/pipes/getGroupedParc.pipe.ts
+++ b/src/atlasComponents/uiSelectors/pipes/getGroupedParc.pipe.ts
@@ -8,7 +8,7 @@ type TReturn = {
name: 'getGroupedParc',
pure: true
})
-export class getGroupedParcPipe implements PipeTransform{
+export class GetGroupedParcPipe implements PipeTransform{
public transform(arr: any[]):TReturn{
const returnObj: TReturn = {}
diff --git a/src/atlasComponents/userAnnotations/tools/service.ts b/src/atlasComponents/userAnnotations/tools/service.ts
index dccdc60427a025b8c0e9fc974e03bc6e23f959ee..26fc809549b7f7fd59740539aaaec0e09ae66a4a 100644
--- a/src/atlasComponents/userAnnotations/tools/service.ts
+++ b/src/atlasComponents/userAnnotations/tools/service.ts
@@ -172,7 +172,7 @@ export class ModularUserAnnotationToolService implements OnDestroy{
const d = (arg as TCallback['message']['callArg'] & { type: any })
const { message, actionCallback, action = null } = d
this.snackbar.open(message, action, {
- duration: 3000
+ duration: 5000
}).afterDismissed().subscribe(({ dismissedByAction }) => {
if (dismissedByAction && actionCallback) actionCallback()
})
diff --git a/src/atlasComponents/userAnnotations/tools/type.ts b/src/atlasComponents/userAnnotations/tools/type.ts
index 8e33221b9bdf575fd3e2a196711236dce78b6d3b..763a58fcb59efc5aeee758008f2d5a6c710ac7c7 100644
--- a/src/atlasComponents/userAnnotations/tools/type.ts
+++ b/src/atlasComponents/userAnnotations/tools/type.ts
@@ -156,7 +156,23 @@ export abstract class AbsToolClass<T extends IAnnotationGeometry> {
public addAnnotation(geom: T) {
const found = this.managedAnnotations.find(ann => ann.id === geom.id)
- if (found) found.remove()
+ if (found) {
+ this.callback({
+ type: "message",
+ message: `Annotation with id ${found.id} already exist under the name ${found.name}. Replaced with ${geom.name}`,
+ action: "Learn more",
+ actionCallback: () => {
+ // see issue https://github.com/FZJ-INM1-BDA/siibra-explorer/issues/1128
+ const a = document.createElement("a")
+ a.href = "https://github.com/FZJ-INM1-BDA/siibra-explorer/issues/1128"
+ a.target = "_blank"
+ document.body.appendChild(a)
+ a.click()
+ document.body.removeChild(a)
+ }
+ })
+ found.remove()
+ }
const sub = geom.updateSignal$.subscribe(() => {
this.managedAnnotations$.next(this.managedAnnotations)
})
diff --git a/src/atlasViewer/atlasViewer.workerService.service.ts b/src/atlasViewer/atlasViewer.workerService.service.ts
index 653764d97a7670d16ca8805c1033f09775de0cb0..9a17115534cae61a899a29c7d32bc4602599fd19 100644
--- a/src/atlasViewer/atlasViewer.workerService.service.ts
+++ b/src/atlasViewer/atlasViewer.workerService.service.ts
@@ -28,10 +28,10 @@ export class AtlasWorkerService {
...data
}, transfers)
const message = await fromEvent(this.worker, 'message').pipe(
- filter((message: MessageEvent) => message.data.id && message.data.id === newUuid),
+ filter((msg: MessageEvent) => msg.data.id && msg.data.id === newUuid),
take(1)
).toPromise()
-
+
const { data: returnData } = message as MessageEvent
const { id, error, ...rest } = returnData
if (error) {
diff --git a/src/environments/parseEnv.js b/src/environments/parseEnv.js
index 84c95658b5b7466938de4d8c8f675950662b1162..dbd985314dc0c472611870143293d584b95e1e11 100644
--- a/src/environments/parseEnv.js
+++ b/src/environments/parseEnv.js
@@ -16,6 +16,18 @@ const main = async () => {
GIT_HASH = 'unknown hash',
EXPERIMENTAL_FEATURE_FLAG
} = process.env
+
+ console.log(`[parseEnv.js] parse envvar:`, {
+ BACKEND_URL,
+ DATASET_PREVIEW_URL,
+ STRICT_LOCAL,
+ MATOMO_URL,
+ MATOMO_ID,
+ BS_REST_URL,
+ VERSION,
+ GIT_HASH,
+ EXPERIMENTAL_FEATURE_FLAG,
+ })
const version = JSON.stringify(
VERSION || 'unknown version'
)
diff --git a/src/index.html b/src/index.html
index 8fd23a5d9027b1514df06dc820b766c9b0027af7..0928ef9d4a1e014365a41dedc3481534b08f68f5 100644
--- a/src/index.html
+++ b/src/index.html
@@ -10,15 +10,11 @@
<link rel="stylesheet" href="icons/iav-icons.css">
<link rel="stylesheet" href="main.css">
<link rel="stylesheet" href="version.css">
- <link rel="icon" type="image/png" href="res/favicons/favicon-128-light.png"/>
- <script>
- // disable zone patching of raf. This hampers NG performance significantly
- window['__Zone_disable_requestAnimationFrame'] = true
- </script>
- <script src="https://unpkg.com/kg-dataset-previewer@1.2.0/dist/kg-dataset-previewer/kg-dataset-previewer.js" defer>
- </script>
+ <link rel="icon" type="image/png" href="assets/favicons/favicon-128-light.png"/>
+ <script src="extra_js.js"></script>
+ <script src="https://unpkg.com/kg-dataset-previewer@1.2.0/dist/kg-dataset-previewer/kg-dataset-previewer.js" defer></script>
<script src="https://unpkg.com/three-surfer@0.0.10/dist/bundle.js" defer></script>
- <script type="module" src="https://unpkg.com/ng-layer-tune@0.0.4/dist/ng-layer-tune/ng-layer-tune.esm.js"></script>
+ <script type="module" src="https://unpkg.com/ng-layer-tune@0.0.5/dist/ng-layer-tune/ng-layer-tune.esm.js"></script>
<title>Interactive Atlas Viewer</title>
</head>
diff --git a/src/main-common.ts b/src/main-common.ts
index c3f3f5ee2d1f07260b1932bbe9152d65c7e81dc7..3bfc08878e14626e0a9cc0c95d26806ed27a47e3 100644
--- a/src/main-common.ts
+++ b/src/main-common.ts
@@ -20,11 +20,6 @@ import '!!file-loader?context=src/res&name=icons/iav-icons.ttf!src/res/icons/iav
import '!!file-loader?context=src/res&name=icons/iav-icons.woff!src/res/icons/iav-icons.woff'
import '!!file-loader?context=src/res&name=icons/iav-icons.svg!src/res/icons/iav-icons.svg'
-/**
- * favicons
- */
-import '!!file-loader?context=src/res/favicons&name=favicon-128-light.png!src/res/favicons/favicon-128-light.png'
-
/**
* version css
*/
diff --git a/src/util/pureConstant.service.ts b/src/util/pureConstant.service.ts
index 5d69b140153b700a2d76e35070602b6fba98dc23..51406f461875ce46e737629f8f5f87c0c64beeae 100644
--- a/src/util/pureConstant.service.ts
+++ b/src/util/pureConstant.service.ts
@@ -17,7 +17,7 @@ import { MatSnackBar } from "@angular/material/snack-bar";
import { TTemplateImage } from "./interfaces";
export const SIIBRA_API_VERSION_HEADER_KEY='x-siibra-api-version'
-export const SIIBRA_API_VERSION = '0.1.8'
+export const SIIBRA_API_VERSION = '0.1.10'
const validVolumeType = new Set([
'neuroglancer/precomputed',
diff --git a/src/viewerModule/nehuba/nehubaContainer.component.spec.ts b/src/viewerModule/nehuba/nehubaContainer.component.spec.ts
deleted file mode 100644
index 24fc4230411831d5e2f4c71ed5b9afa575645aa5..0000000000000000000000000000000000000000
--- a/src/viewerModule/nehuba/nehubaContainer.component.spec.ts
+++ /dev/null
@@ -1,684 +0,0 @@
-
-// const {
-// TOGGLE_SIDE_PANEL,
-// EXPAND,
-// COLLAPSE,
-// ZOOM_IN,
-// ZOOM_OUT,
-// TOGGLE_FRONTAL_OCTANT
-// } = ARIA_LABELS
-
-// const bigbrainJson = {
-// ..._bigbrainJson,
-// nehubaConfig: _bigbrainNehubaConfigJson
-// }
-// const importNehubaSpy = jasmine.createSpy('importNehubaSpy').and.returnValue(Promise.reject())
-
-describe('> nehubaContainer.component.ts', () => {
-
- describe('> NehubaContainer', () => {
-
- // beforeEach(async(() => {
-
- // TestBed.configureTestingModule({
- // imports: [
- // NoopAnimationsModule,
- // WidgetModule,
- // AngularMaterialModule,
- // LayoutModule,
- // UtilModule,
- // NehubaModule,
- // AuthModule,
- // StateModule,
- // FormsModule,
- // ReactiveFormsModule,
- // HttpClientModule,
- // CommonModule,
- // RegionalFeaturesModule,
- // ParcellationRegionModule,
- // AtlasCmpParcellationModule,
-
- // /**
- // * because the change done to pureconstant service, need to intercept http call to avoid crypto error message
- // * so and so components needs to be compiled first. make sure you call compileComponents
- // */
- // HttpClientTestingModule,
- // Landmark2DModule,
- // ],
- // declarations: [
- // NehubaContainer,
- // TouchSideClass,
- // MaximisePanelButton,
- // AtlasLayerSelector,
- // StatusCardComponent,
- // NehubaViewerTouchDirective,
- // MobileOverlay,
-
- // SplashScreen,
- // CurrentLayout,
-
- // // pipes
- // MobileControlNubStylePipe,
- // ReorderPanelIndexPipe,
-
- // RegionAccordionTooltipTextPipe,
- // ],
- // providers: [
- // provideMockStore({ initialState: defaultRootState }),
- // {
- // provide: IMPORT_NEHUBA_INJECT_TOKEN,
- // useValue: importNehubaSpy
- // },
- // PureContantService,
- // ],
- // schemas: [
- // CUSTOM_ELEMENTS_SCHEMA
- // ],
- // }).compileComponents()
-
- // }))
-
-
- // const fixture = TestBed.createComponent(NehubaContainer)
- // fixture.componentInstance.currentOnHoverObs$ = hot('')
- // const el = fixture.debugElement.componentInstance
- // expect(el).toBeTruthy()
- it('> component can be created')
-
- describe('> on selectedTemplatechange', () => {
-
- // const fixture = TestBed.createComponent(NehubaContainer)
- // fixture.componentInstance.currentOnHoverObs$ = hot('')
-
- // const mockStore = TestBed.inject(MockStore)
- // const newState = {
- // ...defaultRootState,
- // viewerState: {
- // ...defaultRootState.viewerState,
- // fetchedTemplates: [ bigbrainJson ],
- // templateSelected: bigbrainJson,
- // parcellationSelected: bigbrainJson.parcellations[0]
- // },
- // [viewerStateHelperStoreName]: {
- // fetchedAtlases: [ humanAtlas ],
- // selectedAtlasId: humanAtlas['@id']
- // }
- // }
-
- // mockStore.setState(newState)
- // fixture.detectChanges()
- // expect(importNehubaSpy).toHaveBeenCalled()
- it('> calls importNehubaPr')
-
- /**
- * TODO perhaps move this to e2e?
- */
- it('> drag handle reattaches properly')
- })
-
- describe('> on selectedparcellation change', () => {
-
-
- // const fixture = TestBed.createComponent(NehubaContainer)
- // fixture.componentInstance.currentOnHoverObs$ = hot('')
- // const el = fixture.debugElement.componentInstance as NehubaContainer
- // const mockStore = TestBed.inject(MockStore)
- // const newState = {
- // ...defaultRootState,
- // viewerState: {
- // ...defaultRootState.viewerState,
- // fetchedTemplates: [ bigbrainJson ],
- // templateSelected: bigbrainJson,
- // parcellationSelected: bigbrainJson.parcellations[0]
- // },
- // [viewerStateHelperStoreName]: {
- // fetchedAtlases: [ humanAtlas ],
- // selectedAtlasId: humanAtlas['@id']
- // }
- // }
-
- // mockStore.setState(newState)
- // fixture.detectChanges()
-
- // const setSpy = spyOnProperty(el.nehubaViewer, 'ngIds', 'set')
-
- // const newState2 = {
- // ...defaultRootState,
- // viewerState: {
- // ...defaultRootState.viewerState,
- // fetchedTemplates: [ bigbrainJson ],
- // templateSelected: bigbrainJson,
- // parcellationSelected: bigbrainJson.parcellations[1]
- // },
- // [viewerStateHelperStoreName]: {
- // fetchedAtlases: [ humanAtlas ],
- // selectedAtlasId: humanAtlas['@id']
- // }
- // }
-
- // mockStore.setState(newState2)
- // fixture.detectChanges()
-
- // expect(setSpy).toHaveBeenCalled()
- it('> should set ngId of nehubaViewer')
- })
-
- describe('> extended sidepanel hides and shows as expected', () => {
- describe('> on start, if nothing is selected', () => {
- // beforeEach(() => {
- // const mockStore = TestBed.inject(MockStore)
- // const newState = {
- // ...defaultRootState,
- // viewerState: {
- // ...defaultRootState.viewerState,
- // fetchedTemplates: [ bigbrainJson ],
- // templateSelected: bigbrainJson,
- // parcellationSelected: bigbrainJson.parcellations[0]
- // },
- // [viewerStateHelperStoreName]: {
- // fetchedAtlases: [ humanAtlas ],
- // selectedAtlasId: humanAtlas['@id']
- // }
- // }
-
- // mockStore.setState(newState)
- // })
-
-
-
- // const fixture = TestBed.createComponent(NehubaContainer)
- // fixture.componentInstance.currentOnHoverObs$ = hot('')
- // fixture.detectChanges()
- // expect(
- // fixture.componentInstance.matDrawerMain.opened
- // ).toEqual(false)
- // expect(
- // fixture.componentInstance.matDrawerMinor.opened
- // ).toEqual(false)
- it('> both should be shut')
-
-
- // const fixture = TestBed.createComponent(NehubaContainer)
- // fixture.componentInstance.currentOnHoverObs$ = hot('')
- // fixture.detectChanges()
- // const toggleBtn = fixture.debugElement.query( By.css(`[aria-label="${TOGGLE_SIDE_PANEL}"]`) )
- // toggleBtn.triggerEventHandler('click', null)
- // fixture.detectChanges()
-
- // expect(
- // fixture.componentInstance.matDrawerMain.opened
- // ).toEqual(true)
- // expect(
- // fixture.componentInstance.matDrawerMinor.opened
- // ).toEqual(false)
- it('> opening via tab should result in only top drawer open')
-
-
-
- // const fixture = TestBed.createComponent(NehubaContainer)
- // fixture.componentInstance.currentOnHoverObs$ = hot('')
- // fixture.detectChanges()
- // const toggleBtn = fixture.debugElement.query( By.css(`[aria-label="${TOGGLE_SIDE_PANEL}"]`) )
- // toggleBtn.triggerEventHandler('click', null)
- // fixture.detectChanges()
- // const expandRegionFeatureBtn = fixture.debugElement.query( By.css(`mat-drawer[data-mat-drawer-secondary-open="true"] [aria-label="${EXPAND}"]`) )
- // expect(expandRegionFeatureBtn).toBeNull()
- it('> on opening top drawer, explore features should not be present')
-
-
- // const fixture = TestBed.createComponent(NehubaContainer)
- // fixture.componentInstance.currentOnHoverObs$ = hot('')
- // fixture.detectChanges()
- // const toggleBtn = fixture.debugElement.query( By.css(`[aria-label="${TOGGLE_SIDE_PANEL}"]`) )
- // toggleBtn.triggerEventHandler('click', null)
- // fixture.detectChanges()
- // const expandRegionFeatureBtn = fixture.debugElement.query( By.css(`mat-drawer[data-mat-drawer-secondary-open="true"] [aria-label="${COLLAPSE}"]`) )
- // expect(expandRegionFeatureBtn).toBeNull()
- it('> collapse btn should not be visible')
- })
-
- describe('> on start, if something is selected', () => {
- // beforeEach(() => {
- // const mockStore = TestBed.inject(MockStore)
- // const newState = {
- // ...defaultRootState,
- // viewerState: {
- // ...defaultRootState.viewerState,
- // fetchedTemplates: [ bigbrainJson ],
- // templateSelected: bigbrainJson,
- // parcellationSelected: bigbrainJson.parcellations[0],
- // regionsSelected: [{
- // name: "foobar",
- // ngId: 'untitled',
- // labelIndex: 15
- // }]
- // },
- // [viewerStateHelperStoreName]: {
- // fetchedAtlases: [ humanAtlas ],
- // selectedAtlasId: humanAtlas['@id']
- // }
- // }
-
- // mockStore.setState(newState)
- // })
-
-
- // const fixture = TestBed.createComponent(NehubaContainer)
- // fixture.componentInstance.currentOnHoverObs$ = hot('')
- // fixture.detectChanges()
- // expect(
- // fixture.componentInstance.matDrawerMain.opened
- // ).toEqual(true)
- // expect(
- // fixture.componentInstance.matDrawerMinor.opened
- // ).toEqual(true)
-
- // expect(
- // fixture.componentInstance.navSideDrawerMainSwitch.switchState
- // ).toEqual(true)
- // expect(
- // fixture.componentInstance.navSideDrawerMinorSwitch.switchState
- // ).toEqual(true)
- it('> both should be open')
-
-
- // () => {
- // const fixture = TestBed.createComponent(NehubaContainer)
- // fixture.componentInstance.currentOnHoverObs$ = hot('')
- // fixture.detectChanges()
- // const toggleBtn = fixture.debugElement.query( By.css(`[aria-label="${TOGGLE_SIDE_PANEL}"]`) )
- // toggleBtn.triggerEventHandler('click', null)
- // fixture.detectChanges()
- // expect(
- // fixture.componentInstance.matDrawerMain.opened
- // ).toEqual(false)
-
- // /**
- // * TODO investigate why openedStart/closedStart events fail to fire
- // */
- // // expect(
- // // fixture.componentInstance.matDrawerMinor.opened
- // // ).toEqual(false)
-
- // // expect(
- // // fixture.componentInstance.navSideDrawerMainSwitch.switchState
- // // ).toEqual(false)
- // // expect(
- // // fixture.componentInstance.navSideDrawerMinorSwitch.switchState
- // // ).toEqual(false)
- // }
- it('> closing main drawer via tag should close both')
-
-
- // () => {
-
- // const fixture = TestBed.createComponent(NehubaContainer)
- // fixture.componentInstance.currentOnHoverObs$ = hot('')
- // fixture.detectChanges()
- // const collapseRegionFeatureBtn = fixture.debugElement.query( By.css(`mat-drawer[data-mat-drawer-secondary-open="true"] [aria-label="${COLLAPSE}"]`) )
- // expect(collapseRegionFeatureBtn).not.toBeNull()
- // }
- it('> collapse btn should be visible')
-
- // () => {
-
- // const fixture = TestBed.createComponent(NehubaContainer)
- // fixture.componentInstance.currentOnHoverObs$ = hot('')
- // fixture.detectChanges()
- // const collapseRegionFeatureBtn = fixture.debugElement.query( By.css(`mat-drawer[data-mat-drawer-secondary-open="true"] [aria-label="${COLLAPSE}"]`) )
- // collapseRegionFeatureBtn.triggerEventHandler('click', null)
- // fixture.detectChanges()
- // expect(
- // fixture.componentInstance.matDrawerMain.opened
- // ).toEqual(true)
-
- // /**
- // * TODO investigate why property does not get updated
- // */
- // // expect(
- // // fixture.componentInstance.matDrawerMinor.opened
- // // ).toEqual(false)
-
- // expect(
- // fixture.componentInstance.navSideDrawerMainSwitch.switchState
- // ).toEqual(true)
- // expect(
- // fixture.componentInstance.navSideDrawerMinorSwitch.switchState
- // ).toEqual(false)
- // }
- it('> clicking on collapse btn should minimize 1 drawer')
-
- // () => {
- // const fixture = TestBed.createComponent(NehubaContainer)
- // fixture.componentInstance.currentOnHoverObs$ = hot('')
- // fixture.detectChanges()
- // const collapseRegionFeatureBtn = fixture.debugElement.query( By.css(`mat-drawer[data-mat-drawer-secondary-open="true"] [aria-label="${COLLAPSE}"]`) )
- // collapseRegionFeatureBtn.triggerEventHandler('click', null)
- // fixture.detectChanges()
- // const expandRegionFeatureBtn = fixture.debugElement.query( By.css(`mat-drawer[data-mat-drawer-primary-open="true"] [aria-label="${EXPAND}"]`) )
- // expandRegionFeatureBtn.triggerEventHandler('click', null)
- // fixture.detectChanges()
-
- // expect(
- // fixture.componentInstance.matDrawerMain.opened
- // ).toEqual(true)
- // expect(
- // fixture.componentInstance.matDrawerMinor.opened
- // ).toEqual(true)
-
- // expect(
- // fixture.componentInstance.navSideDrawerMainSwitch.switchState
- // ).toEqual(true)
- // /**
- // * TODO figoure out why switch state is updated async, and karma can't force update state
- // */
- // // expect(
- // // fixture.componentInstance.navSideDrawerMinorSwitch.switchState
- // // ).toEqual(true)
- // }
- it('> on minimize drawer, clicking expand btn should expand everything')
- })
-
- describe('> side bar content', () => {
-
- /**
- * TODO
- */
- it('> if nothing is shown, it should show place holder text')
-
- /**
- * TODO
- */
- it('> if something (region features/connectivity) exists, placeh holder text should be hdiden')
- })
- })
-
- describe('> panelCtrl', () => {
- // let fixture: ComponentFixture<NehubaContainer>
- // const setViewerLoaded = () => {
- // fixture.componentInstance.viewerLoaded = true
- // }
- // const ctrlElementIsVisible = (el: DebugElement) => {
- // const visible = (el.nativeElement as HTMLElement).getAttribute('data-viewer-controller-visible')
- // return visible === 'true'
- // }
- // beforeEach(() => {
- // fixture = TestBed.createComponent(NehubaContainer)
- // })
-
- // () => {
- // fixture.detectChanges()
- // setViewerLoaded()
- // fixture.detectChanges()
- // for (const idx of [0, 1, 2, 3]) {
- // const el = fixture.debugElement.query(
- // By.css(`[data-viewer-controller-index="${idx}"]`)
- // )
- // expect(el).toBeTruthy()
- // }
- // }
- it('> on start, all four ctrl panels exists')
-
- // () => {
-
- // fixture.detectChanges()
- // setViewerLoaded()
- // fixture.detectChanges()
- // for (const idx of [0, 1, 2, 3]) {
- // const el = fixture.debugElement.query(
- // By.css(`[data-viewer-controller-index="${idx}"]`)
- // )
- // expect(ctrlElementIsVisible(el)).toBeFalsy()
- // }
- // }
- it('> on start all four ctrl panels are invisible')
-
- describe('> on hover, only the hovered panel have ctrl shown', () => {
-
- for (const idx of [0, 1, 2, 3]) {
-
- // fakeAsync(() => {
- // fixture.detectChanges()
- // const findPanelIndexSpy = spyOn<any>(fixture.componentInstance, 'findPanelIndex').and.callFake(() => {
- // return idx
- // })
- // setViewerLoaded()
- // fixture.detectChanges()
- // const nativeElement = fixture.componentInstance['elementRef'].nativeElement
- // nativeElement.dispatchEvent(new MouseEvent('mouseover', { bubbles: true }))
-
- // /**
- // * assert findPanelIndex called with event.target, i.e. native element in thsi case
- // */
- // expect(findPanelIndexSpy).toHaveBeenCalledWith(nativeElement)
- // tick(200)
- // fixture.detectChanges()
-
- // /**
- // * every panel index should be non visible
- // * only when idx matches, it can be visible
- // * n.b. this does not test visual visibility (which is controlled by extra-style.css)
- // * (which is also affected by global [ismobile] configuration)
- // *
- // * this merely test the unit logic, and sets the flag appropriately
- // */
- // for (const iterativeIdx of [0, 1, 2, 3]) {
- // const el = fixture.debugElement.query(
- // By.css(`[data-viewer-controller-index="${iterativeIdx}"]`)
- // )
- // if (iterativeIdx === idx) {
- // expect(ctrlElementIsVisible(el)).toBeTruthy()
- // } else {
- // expect(ctrlElementIsVisible(el)).toBeFalsy()
- // }
- // }
- // discardPeriodicTasks()
- // })
- it(`> on hoveredPanelIndices$ emit ${idx}, the panel index ${idx} ctrl becomes visible`)
- }
-
- })
-
- describe('> on maximise top right slice panel (idx 1)', () => {
- // beforeEach(() => {
- // const mockStore = TestBed.inject(MockStore)
- // mockStore.overrideSelector(ngViewerSelectorPanelMode, PANELS.SINGLE_PANEL)
- // mockStore.overrideSelector(ngViewerSelectorPanelOrder, '1230')
-
- // fixture.detectChanges()
- // setViewerLoaded()
- // fixture.detectChanges()
- // })
-
-
- // () => {
-
- // const toggleBtn = fixture.debugElement.query(
- // By.css(`[cell-i] [aria-label="${TOGGLE_FRONTAL_OCTANT}"]`)
- // )
- // expect(toggleBtn).toBeFalsy()
- // }
- it('> toggle front octant btn not visible')
-
- // () => {
-
- // const zoomInBtn = fixture.debugElement.query(
- // By.css(`[cell-i] [aria-label="${ZOOM_IN}"]`)
- // )
-
- // const zoomOutBtn = fixture.debugElement.query(
- // By.css(`[cell-i] [aria-label="${ZOOM_OUT}"]`)
- // )
-
- // expect(zoomInBtn).toBeTruthy()
- // expect(zoomOutBtn).toBeTruthy()
- // }
- it('> zoom in and out btns are visible')
-
- // () => {
- // const zoomViewSpy = spyOn(fixture.componentInstance, 'zoomNgView')
-
- // const zoomInBtn = fixture.debugElement.query(
- // By.css(`[cell-i] [aria-label="${ZOOM_IN}"]`)
- // )
- // zoomInBtn.triggerEventHandler('click', null)
- // expect(zoomViewSpy).toHaveBeenCalled()
- // const { args } = zoomViewSpy.calls.first()
- // expect(args[0]).toEqual(1)
- // /**
- // * zoom in < 1
- // */
- // expect(args[1]).toBeLessThan(1)
- // }
- it('> zoom in btn calls fn with right param')
-
- // () => {
- // const zoomViewSpy = spyOn(fixture.componentInstance, 'zoomNgView')
-
- // const zoomOutBtn = fixture.debugElement.query(
- // By.css(`[cell-i] [aria-label="${ZOOM_OUT}"]`)
- // )
- // zoomOutBtn.triggerEventHandler('click', null)
- // expect(zoomViewSpy).toHaveBeenCalled()
- // const { args } = zoomViewSpy.calls.first()
- // expect(args[0]).toEqual(1)
- // /**
- // * zoom out > 1
- // */
- // expect(args[1]).toBeGreaterThan(1)
- // }
- it('> zoom out btn calls fn with right param')
- })
-
- describe('> on maximise perspective panel', () => {
- // beforeEach(() => {
- // const mockStore = TestBed.inject(MockStore)
- // mockStore.overrideSelector(ngViewerSelectorPanelMode, PANELS.SINGLE_PANEL)
- // mockStore.overrideSelector(ngViewerSelectorPanelOrder, '3012')
-
- // fixture.detectChanges()
- // setViewerLoaded()
- // fixture.detectChanges()
- // })
-
-
- // () => {
- // const setOctantRemovalSpy = spyOn(fixture.componentInstance, 'setOctantRemoval')
-
- // const toggleBtn = fixture.debugElement.query(
- // By.css(`[cell-i] [aria-label="${TOGGLE_FRONTAL_OCTANT}"]`)
- // )
- // expect(toggleBtn).toBeTruthy()
- // toggleBtn.nativeElement.dispatchEvent(
- // new MouseEvent('click', { bubbles: true })
- // )
- // expect(setOctantRemovalSpy).toHaveBeenCalled()
- // }
- it('> toggle octant btn visible and functional')
-
- // () => {
- // const zoomViewSpy = spyOn(fixture.componentInstance, 'zoomNgView')
-
- // const zoomInBtn = fixture.debugElement.query(
- // By.css(`[cell-i] [aria-label="${ZOOM_IN}"]`)
- // )
- // expect(zoomInBtn).toBeTruthy()
-
- // zoomInBtn.triggerEventHandler('click', null)
- // expect(zoomViewSpy).toHaveBeenCalled()
- // const { args } = zoomViewSpy.calls.first()
- // expect(args[0]).toEqual(3)
- // /**
- // * zoom in < 1
- // */
- // expect(args[1]).toBeLessThan(1)
- // }
- it('> zoom in btn visible and functional')
-
- // () => {
- // const zoomViewSpy = spyOn(fixture.componentInstance, 'zoomNgView')
-
- // const zoomOutBtn = fixture.debugElement.query(
- // By.css(`[cell-i] [aria-label="${ZOOM_OUT}"]`)
- // )
- // expect(zoomOutBtn).toBeTruthy()
-
- // zoomOutBtn.triggerEventHandler('click', null)
- // expect(zoomViewSpy).toHaveBeenCalled()
- // const { args } = zoomViewSpy.calls.first()
- // expect(args[0]).toEqual(3)
- // /**
- // * zoom in < 1
- // */
- // expect(args[1]).toBeGreaterThan(1)
- // }
- it('> zoom out btn visible and functional')
-
- })
- })
-
- describe('> on userLandmarks change', () => {
- const lm1 = {
- id: 'test-1',
- position: [0, 0, 0]
- }
- const lm2 = {
- id: 'test-2',
- position: [1, 1,1 ]
- }
-
- // () => {
- // const fixture = TestBed.createComponent(NehubaContainer)
-
- // fixture.componentInstance.nehubaViewer = {
- // updateUserLandmarks: () => {}
- // } as any
-
- // const updateUserLandmarksSpy = spyOn(
- // fixture.componentInstance.nehubaViewer,
- // 'updateUserLandmarks'
- // )
-
- // const mockStore = TestBed.inject(MockStore)
- // mockStore.overrideSelector(viewerStateCustomLandmarkSelector, [
- // lm1,
- // lm2
- // ])
- // fixture.detectChanges()
- // expect(
- // updateUserLandmarksSpy
- // ).toHaveBeenCalledWith([
- // lm1, lm2
- // ])
- // }
- it('> calls nehubaViewer.updateUserLandmarks')
-
- // () => {
-
- // const fixture = TestBed.createComponent(NehubaContainer)
-
- // fixture.componentInstance.nehubaContainerDirective = {
- // toggleOctantRemoval: () => {},
- // clear: () => {}
- // } as any
-
- // const toggleOctantRemovalSpy = spyOn(
- // fixture.componentInstance.nehubaContainerDirective,
- // 'toggleOctantRemoval'
- // )
-
- // const mockStore = TestBed.inject(MockStore)
- // mockStore.overrideSelector(viewerStateCustomLandmarkSelector, [
- // lm1,
- // lm2
- // ])
- // mockStore.overrideSelector(ngViewerSelectorOctantRemoval, true)
- // fixture.detectChanges()
- // expect(
- // toggleOctantRemovalSpy
- // ).toHaveBeenCalledWith(false)
- // }
- it('> calls togglecotantREmoval')
- })
- })
-})
diff --git a/src/viewerModule/nehuba/viewerCtrl/change-perspective-orientation/changePerspectiveOrientation.component.html b/src/viewerModule/nehuba/viewerCtrl/change-perspective-orientation/changePerspectiveOrientation.component.html
index ad8aca3171ea86ce9172a856a9ea3bd192f4995f..c194ea9659faa473dbf30de56ace6b5e6e83901d 100644
--- a/src/viewerModule/nehuba/viewerCtrl/change-perspective-orientation/changePerspectiveOrientation.component.html
+++ b/src/viewerModule/nehuba/viewerCtrl/change-perspective-orientation/changePerspectiveOrientation.component.html
@@ -4,8 +4,8 @@
<mat-menu #perspectiveOrientationMenu="matMenu">
- <div class="d-flex align-items-center text-light">
- <button mat-button color="basic" class="flex-grow-1 text-left"
+ <div class="d-flex align-items-center iv-custom-comp text">
+ <button mat-button color="basic" class="flex-grow-1 text-left font-weight-normal"
(click)="set3DViewPoint('coronal', 'first')">
Coronal view
</button>
@@ -15,8 +15,8 @@
</button>
</div>
- <div class="d-flex align-items-center text-light"> <!--mat-menu-item-->
- <button mat-button color="basic" class="flex-grow-1 text-left"
+ <div class="d-flex align-items-center iv-custom-comp text"> <!--mat-menu-item-->
+ <button mat-button color="basic" class="flex-grow-1 text-left font-weight-normal"
(click)="set3DViewPoint('sagittal', 'first')">
Sagittal view
</button>
@@ -26,8 +26,8 @@
</button>
</div>
- <div class="d-flex align-items-center text-light"> <!--mat-menu-item-->
- <button mat-button color="basic" class="flex-grow-1 text-left"
+ <div class="d-flex align-items-center iv-custom-comp text"> <!--mat-menu-item-->
+ <button mat-button color="basic" class="flex-grow-1 text-left font-weight-normal"
(click)="set3DViewPoint('axial', 'first')">
Axial view
</button>
diff --git a/src/viewerModule/viewerCmp/viewerCmp.component.ts b/src/viewerModule/viewerCmp/viewerCmp.component.ts
index f930dff417eaff53fb90ff95b6394696bb04e774..68b8a93746f8cc72d2c29750e8b73aee581f12eb 100644
--- a/src/viewerModule/viewerCmp/viewerCmp.component.ts
+++ b/src/viewerModule/viewerCmp/viewerCmp.component.ts
@@ -1,4 +1,4 @@
-import { ChangeDetectionStrategy, Component, ComponentFactory, ComponentFactoryResolver, Inject, Injector, Input, OnDestroy, Optional, TemplateRef, ViewChild, ViewContainerRef } from "@angular/core";
+import { ChangeDetectionStrategy, ChangeDetectorRef, Component, ComponentFactory, ComponentFactoryResolver, Inject, Injector, Input, OnDestroy, Optional, TemplateRef, ViewChild, ViewContainerRef } from "@angular/core";
import { select, Store } from "@ngrx/store";
import { combineLatest, merge, NEVER, Observable, of, Subscription } from "rxjs";
import {catchError, debounceTime, distinctUntilChanged, map, shareReplay, startWith, switchMap } from "rxjs/operators";
@@ -231,6 +231,7 @@ export class ViewerCmp implements OnDestroy {
private cStore: ComponentStore<TCStoreViewerCmp>,
cfr: ComponentFactoryResolver,
private dialogSvc: DialogService,
+ private cdr: ChangeDetectorRef,
@Optional() @Inject(_PLI_VOLUME_INJ_TOKEN) private _pliVol$: Observable<_TPLIVal[]>,
@Optional() @Inject(REGION_OF_INTEREST) public regionOfInterest$: Observable<any>
){
@@ -375,7 +376,7 @@ export class ViewerCmp implements OnDestroy {
this.genericInfoVCR.clear()
this.genericInfoVCR.createComponent(this.genericInfoCF, null, injector)
-
+ this.cdr.markForCheck()
})
)
}
diff --git a/third_party/extra_js.js b/third_party/extra_js.js
new file mode 100644
index 0000000000000000000000000000000000000000..82febd16a73314d0b797ae6ced9957d4849af412
--- /dev/null
+++ b/third_party/extra_js.js
@@ -0,0 +1,2 @@
+// disable zone patching of raf. This hampers NG performance significantly
+window['__Zone_disable_requestAnimationFrame'] = true
\ No newline at end of file
diff --git a/worker/worker-typedarray.js b/worker/worker-typedarray.js
new file mode 100644
index 0000000000000000000000000000000000000000..e501bfa19de2db4892f542131403e2db1a63ab4d
--- /dev/null
+++ b/worker/worker-typedarray.js
@@ -0,0 +1,37 @@
+(function(exports){
+ exports.typedArray = {
+ fortranToRGBA(inputArray, width, height, channel) {
+ if (channel !== 1 && channel !== 3) {
+ throw new Error(`channel must be either 1 or 3`)
+ }
+ const greyScale = (channel === 1)
+ const dim = width * height
+ if (channel === 1 && inputArray.length !== dim) {
+ throw new Error(`for single channel, expect width * height === inputArray.length, but ${width} * ${height} !== ${inputArray.length}`)
+ }
+ if (channel === 3 && inputArray.length !== (dim * 3)) {
+ throw new Error(`for 3 channel, expect 3 * width * height === inputArray.length, but 3 * ${width} * ${height} !== ${inputArray.length}`)
+ }
+ const _ = new ArrayBuffer(width * height * 4)
+ const buffer = new Uint8ClampedArray(_)
+ for (let i = 0; i < width; i ++) {
+ for (let j = 0; j < height; j ++) {
+ for (let k = 0; k < 4; k ++) {
+ const toIndex = (j * width + i) * 4 + k
+ const fromValue = k === 3
+ ? 255
+ : greyScale
+ ? inputArray[width * j + i]
+ : inputArray[dim * k + width * j + i]
+ buffer[toIndex] = fromValue
+ }
+ }
+ }
+ return buffer
+ }
+ }
+})(
+ typeof exports === 'undefined'
+ ? self
+ : exports
+)
\ No newline at end of file
diff --git a/worker/worker.js b/worker/worker.js
index 51156b1b95fe6ac2dd8d064156c0bf36ca6d56e9..04a3db58bd8cbac500f2ab0dedc896ea2de7f979 100644
--- a/worker/worker.js
+++ b/worker/worker.js
@@ -9,6 +9,7 @@ globalThis.constants = {
if (typeof self.importScripts === 'function') self.importScripts('./worker-plotly.js')
if (typeof self.importScripts === 'function') self.importScripts('./worker-nifti.js')
+if (typeof self.importScripts === 'function') self.importScripts('./worker-typedarray.js')
/**
* TODO migrate processing functionalities to other scripts
@@ -24,11 +25,13 @@ const validTypes = [
const VALID_METHOD = {
PROCESS_PLOTLY: `PROCESS_PLOTLY`,
PROCESS_NIFTI: 'PROCESS_NIFTI',
+ PROCESS_TYPED_ARRAY: `PROCESS_TYPED_ARRAY`,
}
const VALID_METHODS = [
VALID_METHOD.PROCESS_PLOTLY,
VALID_METHOD.PROCESS_NIFTI,
+ VALID_METHOD.PROCESS_TYPED_ARRAY,
]
const validOutType = [
@@ -291,6 +294,27 @@ onmessage = (message) => {
})
}
}
+ if (message.data.method === VALID_METHOD.PROCESS_TYPED_ARRAY) {
+ try {
+ const { inputArray, width, height, channel } = message.data.param
+ const buffer = self.typedArray.fortranToRGBA(inputArray, width, height, channel)
+
+ postMessage({
+ id,
+ result: {
+ buffer
+ }
+ }, [ buffer.buffer ])
+ } catch (e) {
+ postMessage({
+ id,
+ error: {
+ code: 401,
+ message: `process typed array error: ${e.toString()}`
+ }
+ })
+ }
+ }
postMessage({
id,
error: {