diff --git a/Dockerfile b/Dockerfile
index 084dc81ae5daf8572492d3a27fac22d0125c1649..011844f5576860b2cab17aef2699806a8a75a4e5 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -4,7 +4,7 @@ ARG BACKEND_URL
ENV BACKEND_URL=${BACKEND_URL}
ARG DATASET_PREVIEW_URL
-ENV DATASET_PREVIEW_URL=${DATASET_PREVIEW_URL:-https://hbp-kg-dataset-previewer.apps.hbp.eu/datasetPreview}
+ENV DATASET_PREVIEW_URL=${DATASET_PREVIEW_URL:-https://hbp-kg-dataset-previewer.apps.hbp.eu/v2}
ARG STRICT_LOCAL
ENV STRICT_LOCAL=${STRICT_LOCAL:-false}
diff --git a/deploy/csp/index.js b/deploy/csp/index.js
index b30032c30af95b14b9cfccbae16d94eb8cd8d849..11002382d34afb5fef71151eface5f0ed8a57dff 100644
--- a/deploy/csp/index.js
+++ b/deploy/csp/index.js
@@ -88,12 +88,10 @@ module.exports = (app) => {
'unpkg.com',
'*.unpkg.com',
'*.jsdelivr.net',
-
- // Catching Safari 10 bug unsafe-eval
- "'sha256-yEVCaeeaeg6koloXfx+6DuFnP7SnjOwYZiWBTRFurJw='",
(req, res) => res.locals.nonce ? `'nonce-${res.locals.nonce}'` : null,
...SCRIPT_SRC,
- ...WHITE_LIST_SRC
+ ...WHITE_LIST_SRC,
+ ...defaultAllowedSites
],
reportUri: CSP_REPORT_URI || '/report-violation'
},
diff --git a/deploy/datasets/testData/mni152JuBrain.js b/deploy/datasets/testData/mni152JuBrain.js
index 788d622c47c85e9318868752bd2c14686df37f7e..4cfe826de11c69cc3d16018564f11f4a53c43601 100644
--- a/deploy/datasets/testData/mni152JuBrain.js
+++ b/deploy/datasets/testData/mni152JuBrain.js
@@ -185,9 +185,9 @@ module.exports = [
"parcellationRegion": [
{
"species": [],
- "name": "Area hOc1",
+ "name": "Area hOc1 (V1, 17, CalcS)",
"alias": null,
- "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationregion/v1.0.0/b851eb9d-9502-45e9-8dd8-2861f0e6da3f"
+ "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationregion/v1.0.0/5151ab8f-d8cb-4e67-a449-afe2a41fb007"
}
],
"species": [
@@ -297,9 +297,9 @@ module.exports = [
"parcellationRegion": [
{
"species": [],
- "name": "Area 44d",
+ "name": "Area 44 (IFG)",
"alias": null,
- "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationregion/v1.0.0/8aeae833-81c8-4e27-a8d6-deee339d6052"
+ "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationregion/v1.0.0/8a6be82c-5947-4fff-8348-cf9bf73e4f40"
}
],
"species": [
diff --git a/docs/releases/v2.2.5.md b/docs/releases/v2.2.5.md
new file mode 100644
index 0000000000000000000000000000000000000000..c33bc12728478e3497ba067b36fb4b29c3536bfd
--- /dev/null
+++ b/docs/releases/v2.2.5.md
@@ -0,0 +1,7 @@
+# v2.2.5
+
+28 July 2020
+
+## Bugfixes
+
+- Fixed status panel voxel/real toggle ineffective bug (Thanks to Dr El Mysteryo)
diff --git a/docs/releases/v2.2.6.md b/docs/releases/v2.2.6.md
new file mode 100644
index 0000000000000000000000000000000000000000..717faaf5a20dab8896bfaea6da9e9d4ca6577969
--- /dev/null
+++ b/docs/releases/v2.2.6.md
@@ -0,0 +1,14 @@
+# v2.2.6
+
+## Feat
+
+- Added Julich Brain v2.4 to the supported atlases
+
+## Bugfixes
+
+- Fixed matomo CSP issues
+- Updated kg dataset previewer URL
+
+# Under the hood
+
+- CI/CD: auto tag releases on github
diff --git a/mkdocs.yml b/mkdocs.yml
index 4755162c998527cef65bdb3ddcdf08efebcfb9e6..caa47fd57cc45a872ffdc9f7fc681ac9c8eca17e 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -41,6 +41,9 @@ pages:
- Display non-atlas volumes: 'advanced/otherVolumes.md'
- Release notes:
- v2.3.0: 'releases/v2.3.0.md'
+ - v2.2.6: 'releases/v2.2.6.md'
+ - v2.2.5: 'releases/v2.2.5.md'
+ - v2.2.4: 'releases/v2.2.4.md'
- v2.2.3: 'releases/v2.2.3.md'
- v2.2.2: 'releases/v2.2.2.md'
- v2.2.1: 'releases/v2.2.1.md'
diff --git a/release.sh b/release.sh
new file mode 100755
index 0000000000000000000000000000000000000000..2eb23818ae9e75d207b874bbaa1b924d9b83dccf
--- /dev/null
+++ b/release.sh
@@ -0,0 +1,70 @@
+#! /bin/bash
+
+# This is an automated script for TravisCI
+# It is triggered on push to master
+# It will create a release and publish to the github repo
+
+OWNER=HumanBrainProject
+REPO=interactive-viewer
+USER=xgui3783
+EMAIL=xgui3783@gmail.com
+#GITHUB_TOKEN should be populated by CI
+
+test -z "$GITHUB_TOKEN" && exit 1
+
+TAG=$(jq '.version' < package.json)
+TAG=${TAG#\"}
+TAG=v${TAG%\"}
+OBJECT=$(git rev-parse HEAD)
+DATE=$(date --iso-8601=seconds)
+BODY='{
+ "tag": "'$TAG'",
+ "message": "Annotated release for '$TAG'",
+ "object": "'$OBJECT'",
+ "type": "commit",
+ "tagger": {
+ "name": "'$USER'",
+ "email": "'$EMAIL'",
+ "date": "'$DATE'"
+ }
+}'
+
+# Create annotated tag
+
+echo curl -XPOST \
+ -H "Accept: application/vnd.github.v3+json" \
+ -u "$USER:$GITHUB_TOKEN"\
+ -d "$BODY" \
+ https://api.github.com/repos/$OWNER/$REPO/git/tags
+
+# Push tag to remote
+
+CREATE_REF_BODY='{
+ "ref":"refs/tags/'$TAG'",
+ "sha":"'$OBJECT'"
+}'
+
+echo curl -XPOST\
+ -u "$USER:$GITHUB_TOKEN"\
+ -H "Accept: application/vnd.github.v3+json" \
+ -d "$CREATE_REF_BODY"\
+ https://api.github.com/repos/$OWNER/$REPO/git/refs
+
+# Create release
+
+RELEASE_NOTES=$(sed -e 's/$/\\n/' docs/releases/$TAG.md)
+
+RELEASE_BODY='{
+ "tag_name":"'$TAG'",
+ "name":"'$TAG'",
+ "body":"'$(echo $RELEASE_NOTES)'",
+ "target_commitish": "master",
+ "draft":false,
+ "prerelease":false
+}'
+
+echo curl -XPOST\
+ -u "$USER:$GITHUB_TOKEN"\
+ -H "Accept: application/vnd.github.v3+json" \
+ -d "$RELEASE_BODY" \
+ https://api.github.com/repos/$OWNER/$REPO/releases
diff --git a/src/glue.ts b/src/glue.ts
index e5eedb9ff59eb2e55e21f4ea0259c96f655ab646..671fc0bebf2039930a5278ea645f2936cd553ae1 100644
--- a/src/glue.ts
+++ b/src/glue.ts
@@ -358,7 +358,8 @@ export class DatasetPreviewGlue implements IDatasetPreviewGlue, OnDestroy{
return {
...json,
filename,
- datasetId
+ datasetId,
+ datasetSchema
}
}),
catchError((_err, _obs) => of(null))
@@ -589,6 +590,7 @@ export class DatasetPreviewGlue implements IDatasetPreviewGlue, OnDestroy{
}
private openDatasetPreviewWidget(data: IDatasetPreviewData) {
+ console.log({ data })
const { datasetId: kgId, filename } = data
if (!!this.actionOnWidget) {
@@ -645,9 +647,10 @@ export class DatasetPreviewGlue implements IDatasetPreviewGlue, OnDestroy{
public displayDatasetPreview(previewFile: DatasetPreview, dataset: IKgDataEntry){
const { filename, datasetId } = previewFile
const { fullId } = dataset
- const { kgId } = getIdObj(fullId)
+ const { kgId, kgSchema } = getIdObj(fullId)
const datasetPreviewFile = {
+ datasetSchema: kgSchema,
datasetId: datasetId || kgId,
filename
}
diff --git a/src/res/ext/MNI152.json b/src/res/ext/MNI152.json
index 6e1956d761c602967fbb81a57fe6d68147294e7b..cad3d9c0e3c929e9733de8550d8e83089d039b54 100644
--- a/src/res/ext/MNI152.json
+++ b/src/res/ext/MNI152.json
@@ -8,12 +8,17 @@
"useTheme": "dark",
"ngId": "mni152",
"nehubaConfigURL": "nehubaConfig/MNI152NehubaConfig",
+ "otherNgIds": [
+ "jubrain mni152 v18 left",
+ "jubrain mni152 v18 right",
+ "julich brain mni152 v22 left",
+ "julich brain mni152 v22 right"
+ ],
"parcellations": [
{
- "@id": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579",
"fullId": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579",
- "name": "Cytoarchitectonic maps",
- "ngId": "jubrain mni152 v18 left",
+ "@id": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579",
+ "name": "Cytoarchitectonic Maps",
"auxillaryMeshIndices": [
65535
],
@@ -23,12 +28,11 @@
"originDatasets": [
{
"kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "4ac9f0bc-560d-47e0-8916-7b24da9bb0ce"
+ "kgId": "5249afa7-5e04-4ffd-8039-c3a9231f717c"
}
],
"properties": {
- "version": "1.0",
- "description": "This dataset contains the whole-brain parcellation of the JuBrain Cytoarchitectonic Atlas (Amunts and Zilles, 2015) in the MNI Colin 27 as well as the MNI ICBM 152 2009c nonlinear asymmetric reference space. The parcellation is derived from the individual probability maps (PMs) of the cytoarchitectonic regions released in the JuBrain Atlas, that are further combined into a Maximum Probability Map (MPM). The MPM is calculated by considering for each voxel the probability of all cytoarchitectonic areas released in the atlas, and determining the most probable assignment (Eickhoff 2005). Note that methodological improvements and integration of new brain structures may lead to small deviations in earlier released datasets.",
+ "description": "This dataset contains the whole-brain parcellation of the JuBrain Cytoarchitectonic Atlas (Amunts and Zilles, 2015) in the MNI ICBM 2009c Asymmetric as well as the MNI ICBM 152 2009c nonlinear asymmetric reference space. The parcellation is derived from the individual probability maps (PMs) of the cytoarchitectonic regions released in the JuBrain Atlas, that are further combined into a Maximum Probability Map (MPM). The MPM is calculated by considering for each voxel the probability of all cytoarchitectonic areas released in the atlas, and determining the most probable assignment (Eickhoff 2005). Note that methodological improvements and integration of new brain structures may lead to small deviations in earlier released datasets.",
"publications": [
{
"doi": "https://doi.org/10.1038/nrn2776",
@@ -48,8072 +52,12551 @@
{
"name": "telencephalon",
"status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null,
"children": [
{
"name": "cerebral nuclei",
"status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null,
"children": [
{
"name": "basal forebrain",
"status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null,
"children": [
{
"name": "magnocellular group within septum",
"status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null,
"children": [
{
"name": "Ch 123 (Basal Forebrain)",
- "arealabel": "Ch-123",
"status": "publicP",
- "labelIndex": null,
- "synonyms": [],
- "rgb": [
- 124,
- 233,
- 167
- ],
"children": [
{
- "name": "Ch 123 (Basal Forebrain) - left hemisphere",
+ "name": "Ch 123 (Basal Forebrain)",
+ "status": "left hemisphere",
+ "labelIndex": 76,
"rgb": [
- 124,
- 233,
- 167
- ],
- "labelIndex": 286,
- "ngId": "jubrain mni152 v18 left",
- "children": [],
- "position": [
- -3648265,
- 3367508,
- -8957413
- ]
+ 200,
+ 200,
+ 200
+ ],
+ "ngId": "ICBM152_V24_LEFT_NG",
+ "originDatasets": [
+ {
+ "filename": "Ch 123 (Basal Forebrain) [v4.2, ICBM 2009c Asymmetric, left hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "147aaab9-d5f2-48db-80f3-95adc9e7e8a6"
+ }
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "bb111a95-e04c-4987-8254-4af4ed8b0022"
+ }
+ },
+ "_": {
+ "xml": {
+ "name": "Ch 123 (Basal Forebrain)",
+ "id": "286",
+ "grayvalue": "76"
+ },
+ "dat": {
+ "colors": false,
+ "names": false
+ }
+ }
},
{
- "name": "Ch 123 (Basal Forebrain) - right hemisphere",
+ "name": "Ch 123 (Basal Forebrain)",
+ "status": "right hemisphere",
+ "labelIndex": 76,
"rgb": [
- 124,
- 233,
- 167
- ],
- "ngId": "jubrain mni152 v18 right",
- "labelIndex": 286,
- "children": [],
- "position": [
- 1687097,
- 4148387,
- -8461290
- ]
+ 200,
+ 200,
+ 200
+ ],
+ "ngId": "ICBM152_V24_RIGHT_NG",
+ "originDatasets": [
+ {
+ "filename": "Ch 123 (Basal Forebrain) [v4.2, ICBM 2009c Asymmetric, right hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "147aaab9-d5f2-48db-80f3-95adc9e7e8a6"
+ }
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "bb111a95-e04c-4987-8254-4af4ed8b0022"
+ }
+ },
+ "_": {
+ "xml": {
+ "name": "Ch 123 (Basal Forebrain)",
+ "id": "286",
+ "grayvalue": "76"
+ },
+ "dat": {
+ "colors": false,
+ "names": false
+ }
+ }
}
],
- "fullId": {
- "kg": {
- "kgSchema": "minds/core/parcellationregion/v1.0.0",
- "kgId": "bb111a95-e04c-4987-8254-4af4ed8b0022"
+ "_": {
+ "jubrain-ontology_24.json": {
+ "name": "Ch 123 (Basal Forebrain)",
+ "arealabel": "Ch-123",
+ "status": "publicP",
+ "labelIndex": "286",
+ "doi": "https://doi.org/10.25493/7SEP-P2V",
+ "synonyms": [],
+ "rgb": null,
+ "kgHref": "https://kg.ebrains.eu/instances/Dataset/147aaab9-d5f2-48db-80f3-95adc9e7e8a6"
+ },
+ "kgRegion": {
+ "alternateOf": [],
+ "species": [],
+ "name": "Ch 123 (Basal Forebrain)",
+ "alias": null,
+ "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationregion/v1.0.0/bb111a95-e04c-4987-8254-4af4ed8b0022"
}
- },
- "relatedAreas": []
+ }
+ }
+ ],
+ "_": {
+ "jubrain-ontology_24.json": {
+ "name": "magnocellular group within septum",
+ "status": null,
+ "labelIndex": null,
+ "synonyms": [],
+ "rgb": null
}
- ]
+ }
},
{
"name": "sublenticular part of basal forebrain",
"status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null,
"children": [
{
"name": "Ch 4 (Basal Forebrain)",
- "arealabel": "Ch-4",
"status": "publicP",
- "labelIndex": null,
- "synonyms": [],
- "rgb": [
- 116,
- 243,
- 12
- ],
"children": [
{
- "name": "Ch 4 (Basal Forebrain) - left hemisphere",
+ "name": "Ch 4 (Basal Forebrain)",
+ "status": "left hemisphere",
+ "labelIndex": 12,
"rgb": [
- 116,
- 243,
- 12
- ],
- "labelIndex": 264,
- "ngId": "jubrain mni152 v18 left",
- "children": [],
- "position": [
- -17620275,
- -2290378,
- -12609966
+ 200,
+ 200,
+ 200
],
+ "ngId": "ICBM152_V24_LEFT_NG",
"originDatasets": [
{
- "kgId": "791a14c8-b899-414f-b237-27574a4cce7e",
+ "filename": "Ch 4 (Basal Forebrain) [v4.2, ICBM 2009c Asymmetric, left hemisphere]",
"kgSchema": "minds/core/dataset/v1.0.0",
- "filename": "Ch 4 (Basal Forebrain) [v4.2, ICBM 2009c Asymmetric, left hemisphere]"
+ "kgId": "791a14c8-b899-414f-b237-27574a4cce7e"
+ }
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "a5c9d95f-8e7c-4454-91b6-a790387370fc"
+ }
+ },
+ "_": {
+ "xml": {
+ "name": "Ch 4 (Basal Forebrain)",
+ "id": "264",
+ "grayvalue": "12"
+ },
+ "dat": {
+ "colors": false,
+ "names": false
}
- ]
+ }
},
{
- "name": "Ch 4 (Basal Forebrain) - right hemisphere",
+ "name": "Ch 4 (Basal Forebrain)",
+ "status": "right hemisphere",
+ "labelIndex": 12,
"rgb": [
- 116,
- 243,
- 12
- ],
- "ngId": "jubrain mni152 v18 right",
- "labelIndex": 264,
- "children": [],
- "position": [
- 15978528,
- -1288344,
- -12582822
+ 200,
+ 200,
+ 200
],
+ "ngId": "ICBM152_V24_RIGHT_NG",
"originDatasets": [
{
- "kgId": "791a14c8-b899-414f-b237-27574a4cce7e",
+ "filename": "Ch 4 (Basal Forebrain) [v4.2, ICBM 2009c Asymmetric, right hemisphere]",
"kgSchema": "minds/core/dataset/v1.0.0",
- "filename": "Ch 4 (Basal Forebrain) [v4.2, ICBM 2009c Asymmetric, right hemisphere]"
+ "kgId": "791a14c8-b899-414f-b237-27574a4cce7e"
}
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "a5c9d95f-8e7c-4454-91b6-a790387370fc"
+ }
+ },
+ "_": {
+ "xml": {
+ "name": "Ch 4 (Basal Forebrain)",
+ "id": "264",
+ "grayvalue": "12"
+ },
+ "dat": {
+ "colors": false,
+ "names": false
+ }
+ }
}
],
- "fullId": {
- "kg": {
- "kgSchema": "minds/core/parcellationregion/v1.0.0",
- "kgId": "a5c9d95f-8e7c-4454-91b6-a790387370fc"
+ "_": {
+ "jubrain-ontology_24.json": {
+ "name": "Ch 4 (Basal Forebrain)",
+ "arealabel": "Ch-4",
+ "status": "publicP",
+ "labelIndex": "264",
+ "doi": "https://doi.org/10.25493/VZJ5-8WJ",
+ "synonyms": [],
+ "rgb": null,
+ "kgHref": "https://kg.ebrains.eu/search/instances/Dataset/791a14c8-b899-414f-b237-27574a4cce7e"
+ },
+ "kgRegion": {
+ "alternateOf": [],
+ "species": [],
+ "name": "Ch 4 (Basal Forebrain)",
+ "alias": null,
+ "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationregion/v1.0.0/a5c9d95f-8e7c-4454-91b6-a790387370fc"
}
- },
- "relatedAreas": []
+ }
+ }
+ ],
+ "_": {
+ "jubrain-ontology_24.json": {
+ "name": "sublenticular part of basal forebrain",
+ "status": null,
+ "labelIndex": null,
+ "synonyms": [],
+ "rgb": null
}
- ]
+ }
},
{
"name": "magnocellular group within horizontal limb of diagnoal band",
"status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null,
"children": [
{
"name": "Ch 123 (Basal Forebrain)",
- "arealabel": "Ch-123",
"status": "publicP",
+ "children": [],
+ "_": {
+ "jubrain-ontology_24.json": {
+ "name": "Ch 123 (Basal Forebrain)",
+ "arealabel": "Ch-123",
+ "status": "publicP",
+ "labelIndex": "286",
+ "doi": "https://doi.org/10.25493/7SEP-P2V",
+ "synonyms": [],
+ "rgb": null,
+ "kgHref": "https://kg.ebrains.eu/instances/Dataset/147aaab9-d5f2-48db-80f3-95adc9e7e8a6"
+ }
+ }
+ }
+ ],
+ "_": {
+ "jubrain-ontology_24.json": {
+ "name": "magnocellular group within horizontal limb of diagnoal band",
+ "status": null,
"labelIndex": null,
"synonyms": [],
- "rgb": [
- 124,
- 233,
- 167
- ],
- "children": [
- {
- "name": "Ch 123 (Basal Forebrain) - left hemisphere",
- "rgb": [
- 124,
- 233,
- 167
- ],
- "labelIndex": 286,
- "ngId": "jubrain mni152 v18 left",
- "children": [],
- "position": [
- -3648265,
- 3367508,
- -8957413
- ]
- },
- {
- "name": "Ch 123 (Basal Forebrain) - right hemisphere",
- "rgb": [
- 124,
- 233,
- 167
- ],
- "ngId": "jubrain mni152 v18 right",
- "labelIndex": 286,
- "children": [],
- "position": [
- 1687097,
- 4148387,
- -8461290
- ]
- }
- ],
- "fullId": {
- "kg": {
- "kgSchema": "minds/core/parcellationregion/v1.0.0",
- "kgId": "bb111a95-e04c-4987-8254-4af4ed8b0022"
- }
- },
- "relatedAreas": []
+ "rgb": null
}
- ]
+ }
+ }
+ ],
+ "_": {
+ "jubrain-ontology_24.json": {
+ "name": "basal forebrain",
+ "status": null,
+ "labelIndex": null,
+ "synonyms": [],
+ "rgb": null
}
- ]
+ }
},
{
"name": "amygdala",
"status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null,
"children": [
{
"name": "laterobasal group",
"status": null,
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+ }
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- ]
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+ }
},{
"@id": "juelich/iav/atlas/v1.0.0/5",
"ngId": "fibre bundle long",
diff --git a/src/res/ext/MNI152NehubaConfig.json b/src/res/ext/MNI152NehubaConfig.json
index e8e145cf7f80374435b170d71915dc4cccc5faae..b155b9172f98d720ddc07f7cb46e614044c42057 100644
--- a/src/res/ext/MNI152NehubaConfig.json
+++ b/src/res/ext/MNI152NehubaConfig.json
@@ -95,7 +95,7 @@
},
"jubrain mni152 v18 left": {
"type": "segmentation",
- "visible": true,
+ "visible": false,
"source": "precomputed://https://neuroglancer.humanbrainproject.org/precomputed/JuBrain/18/icbm152casym/left",
"transform": [
[
@@ -126,7 +126,7 @@
},
"jubrain mni152 v18 right": {
"type": "segmentation",
- "visible": true,
+ "visible": false,
"source": "precomputed://https://neuroglancer.humanbrainproject.org/precomputed/JuBrain/18/icbm152casym/right",
"transform": [
[
@@ -155,6 +155,136 @@
]
]
},
+ "julich brain mni152 v22 left": {
+ "type": "segmentation",
+ "visible": false,
+ "source": "precomputed://https://neuroglancer-dev.humanbrainproject.org/precomputed/data-repo/20200807_julich_brain_v2_mni152_left/precomputed",
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+ "julich brain mni152 v22 right": {
+ "type": "segmentation",
+ "visible": false,
+ "source": "precomputed://https://neuroglancer-dev.humanbrainproject.org/precomputed/data-repo/20200807_julich_brain_v2_mni152_right/precomputed",
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+ "ICBM152_V24_LEFT_NG": {
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+ "visible": true,
+ "source": "precomputed://https://neuroglancer.humanbrainproject.eu/precomputed/data-repo/20201002_JulichBrain-V2_4-ICBM152_MPM_mesh/precomputed/left",
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+ "source": "precomputed://https://neuroglancer.humanbrainproject.eu/precomputed/data-repo/20201002_JulichBrain-V2_4-ICBM152_MPM_mesh/precomputed/right",
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"fibre bundle long": {
"type": "segmentation",
"source": "precomputed://https://neuroglancer.humanbrainproject.org/precomputed/Fiber_Bundle/long-bundles_maxprob",
diff --git a/src/res/ext/colin.json b/src/res/ext/colin.json
index 7838324d34f7d9140858c3940775fb57a2d8fd2d..9ca0966cf40a326f0c11f0b675d319d0e9d4c2cf 100644
--- a/src/res/ext/colin.json
+++ b/src/res/ext/colin.json
@@ -12,7 +12,6 @@
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"@id": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579",
"name": "Cytoarchitectonic Maps",
- "ngId": "jubrain colin v18 left",
"auxillaryMeshIndices": [
65535
],
@@ -22,11 +21,10 @@
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+ "kgId": "5249afa7-5e04-4ffd-8039-c3a9231f717c"
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"description": "This dataset contains the whole-brain parcellation of the JuBrain Cytoarchitectonic Atlas (Amunts and Zilles, 2015) in the MNI Colin 27 as well as the MNI ICBM 152 2009c nonlinear asymmetric reference space. The parcellation is derived from the individual probability maps (PMs) of the cytoarchitectonic regions released in the JuBrain Atlas, that are further combined into a Maximum Probability Map (MPM). The MPM is calculated by considering for each voxel the probability of all cytoarchitectonic areas released in the atlas, and determining the most probable assignment (Eickhoff 2005). Note that methodological improvements and integration of new brain structures may lead to small deviations in earlier released datasets.",
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+ "kgHref": "https://kg.ebrains.eu/search/instances/Dataset/dec5c207-c0d9-4f25-a333-1db039c570cb"
+ },
+ "kgRegion": {
+ "alternateOf": [],
+ "species": [],
+ "name": "Fastigial Nucleus (Cerebellum)",
+ "alias": null,
+ "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationregion/v1.0.0/e8abfe3d-8b64-45c2-8853-314d82873273"
}
- },
- "relatedAreas": []
+ }
}
- ]
+ ],
+ "_": {
+ "jubrain-ontology_24.json": {
+ "name": "fastigial nucleus",
+ "status": null,
+ "labelIndex": null,
+ "synonyms": [],
+ "rgb": null
+ }
+ }
},
{
"name": "emboliform nucleus",
"status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null,
"children": [
{
"name": "Interposed Nucleus (Cerebellum)",
- "arealabel": "Interposed-Nucleus",
"status": "publicP",
+ "children": [],
+ "_": {
+ "jubrain-ontology_24.json": {
+ "name": "Interposed Nucleus (Cerebellum)",
+ "arealabel": "Interposed-Nucleus",
+ "status": "publicP",
+ "labelIndex": "251",
+ "doi": "https://doi.org/10.25493/8PTB-JDH",
+ "synonyms": [],
+ "rgb": null,
+ "kgHref": "https://kg.ebrains.eu/search/instances/Dataset/658a7f71-1b94-4f4a-8f15-726043bbb52a"
+ }
+ }
+ }
+ ],
+ "_": {
+ "jubrain-ontology_24.json": {
+ "name": "emboliform nucleus",
+ "status": null,
"labelIndex": null,
- "doi": "https://doi.org/10.25493/8PTB-JDH",
"synonyms": [],
- "rgb": [
- 170,
- 29,
- 10
- ],
- "children": [
- {
- "name": "Interposed Nucleus (Cerebellum) - left hemisphere",
- "rgb": [
- 170,
- 29,
- 10
- ],
- "labelIndex": 251,
- "ngId": "jubrain colin v18 left",
- "children": [],
- "status": "publicP",
- "position": [
- -8457921,
- -55262376,
- -30235149
- ],
- "originDatasets": [
- {
- "kgId": "658a7f71-1b94-4f4a-8f15-726043bbb52a",
- "kgSchema": "minds/core/dataset/v1.0.0",
- "filename": "Interposed Nucleus (Cerebellum) [v6.2, Colin 27, left hemisphere]"
- }
- ]
- },
- {
- "name": "Interposed Nucleus (Cerebellum) - right hemisphere",
- "rgb": [
- 170,
- 29,
- 10
- ],
- "ngId": "jubrain colin v18 right",
- "labelIndex": 251,
- "children": [],
- "status": "publicP",
- "position": [
- 7917989,
- -54201058,
- -31489418
- ],
- "originDatasets": [
- {
- "kgId": "658a7f71-1b94-4f4a-8f15-726043bbb52a",
- "kgSchema": "minds/core/dataset/v1.0.0",
- "filename": "Interposed Nucleus (Cerebellum) [v6.2, Colin 27, right hemisphere]"
- }
- ]
- }
- ],
- "fullId": {
- "kg": {
- "kgSchema": "minds/core/parcellationregion/v1.0.0",
- "kgId": "85e7bb13-4b73-4f6f-8222-3adb7b800788"
- }
- },
- "relatedAreas": []
+ "rgb": null
}
- ]
+ }
+ }
+ ],
+ "_": {
+ "jubrain-ontology_24.json": {
+ "name": "cerebellar nuclei",
+ "status": null,
+ "labelIndex": null,
+ "synonyms": [],
+ "rgb": null
}
- ]
+ }
+ }
+ ],
+ "_": {
+ "jubrain-ontology_24.json": {
+ "name": "cerebellum",
+ "status": null,
+ "labelIndex": null,
+ "synonyms": [],
+ "rgb": null
+ }
+ }
+ }
+ ],
+ "_": {
+ "jubrain-ontology_24.json": {
+ "name": "metencephalon",
+ "status": null,
+ "labelIndex": null,
+ "synonyms": [],
+ "rgb": null
+ }
+ }
+ },
+ {
+ "name": "_",
+ "children": [
+ {
+ "name": "GapMap Frontal-I (GapMap)",
+ "status": "left hemisphere",
+ "labelIndex": 13,
+ "ngId": "COLIN_V24_LEFT_NG",
+ "rgb": [
+ 186,
+ 255,
+ 25
+ ],
+ "originDatasets": [
+ {
+ "filename": "GapMap Frontal-I (GapMap) [v9.2, Colin 27, left hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "6b1ebd25-d1bf-477a-9f6f-d458b24bc6b7"
+ }
+ ],
+ "_": {
+ "xml": {
+ "name": "GapMap Frontal-I (GapMap)",
+ "id": "500",
+ "grayvalue": "13"
+ },
+ "dat": {
+ "colors": "500 186 255 25",
+ "names": "500 GapMap-Frontal-I"
+ }
+ }
+ },
+ {
+ "name": "GapMap Frontal-to-Occipital (GapMap)",
+ "status": "left hemisphere",
+ "labelIndex": 32,
+ "ngId": "COLIN_V24_LEFT_NG",
+ "rgb": [
+ 104,
+ 161,
+ 93
+ ],
+ "originDatasets": [
+ {
+ "filename": "GapMap Frontal-to-Occipital (GapMap) [v9.2, Colin 27, left hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "f3ae17b7-f994-4161-ba60-46a971610167"
+ }
+ ],
+ "_": {
+ "xml": {
+ "name": "GapMap Frontal-to-Occipital (GapMap)",
+ "id": "504",
+ "grayvalue": "32"
+ },
+ "dat": {
+ "colors": "504 104 161 93",
+ "names": "504 GapMap-Frontal-to-Occipital"
+ }
+ }
+ },
+ {
+ "name": "GapMap Temporal-to-Parietal (GapMap)",
+ "status": "left hemisphere",
+ "labelIndex": 60,
+ "ngId": "COLIN_V24_LEFT_NG",
+ "rgb": [
+ 76,
+ 90,
+ 161
+ ],
+ "originDatasets": [
+ {
+ "filename": "GapMap Temporal-to-Parietal (GapMap) [v9.2, Colin 27, left hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "19838359-3e95-4334-aaa0-3c64e3a65c18"
+ }
+ ],
+ "_": {
+ "xml": {
+ "name": "GapMap Temporal-to-Parietal (GapMap)",
+ "id": "503",
+ "grayvalue": "60"
+ },
+ "dat": {
+ "colors": "503 76 90 161",
+ "names": "503 GapMap-Temporal-to-Parietal"
+ }
+ }
+ },
+ {
+ "name": "GapMap Frontal-II (GapMap)",
+ "status": "left hemisphere",
+ "labelIndex": 90,
+ "ngId": "COLIN_V24_LEFT_NG",
+ "rgb": [
+ 255,
+ 135,
+ 15
+ ],
+ "originDatasets": [
+ {
+ "filename": "GapMap Frontal-II (GapMap) [v9.2, Colin 27, left hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "1db74846-624c-4be3-b4cc-71c18e94b119"
+ }
+ ],
+ "_": {
+ "xml": {
+ "name": "GapMap Frontal-II (GapMap)",
+ "id": "501",
+ "grayvalue": "90"
+ },
+ "dat": {
+ "colors": "501 255 135 15",
+ "names": "501 GapMap-Frontal-II"
+ }
+ }
+ },
+ {
+ "name": "GapMap Frontal-to-Temporal (GapMap)",
+ "status": "left hemisphere",
+ "labelIndex": 97,
+ "ngId": "COLIN_V24_LEFT_NG",
+ "rgb": [
+ 161,
+ 24,
+ 74
+ ],
+ "originDatasets": [
+ {
+ "filename": "GapMap Frontal-to-Temporal (GapMap) [v9.2, Colin 27, left hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "6e0c6897-7ecf-451e-a9ad-d3e96bcc7b45"
+ }
+ ],
+ "_": {
+ "xml": {
+ "name": "GapMap Frontal-to-Temporal (GapMap)",
+ "id": "502",
+ "grayvalue": "97"
+ },
+ "dat": {
+ "colors": "502 161 24 74",
+ "names": "502 GapMap-Frontal-to-Temporal"
+ }
+ }
+ },
+ {
+ "name": "GapMap Frontal-I (GapMap)",
+ "status": "right hemisphere",
+ "labelIndex": 13,
+ "ngId": "COLIN_V24_RIGHT_NG",
+ "rgb": [
+ 186,
+ 255,
+ 25
+ ],
+ "originDatasets": [
+ {
+ "filename": "GapMap Frontal-I (GapMap) [v9.2, Colin 27, right hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "6b1ebd25-d1bf-477a-9f6f-d458b24bc6b7"
+ }
+ ],
+ "_": {
+ "xml": {
+ "name": "GapMap Frontal-I (GapMap)",
+ "id": "500",
+ "grayvalue": "13"
+ },
+ "dat": {
+ "colors": "500 186 255 25",
+ "names": "500 GapMap-Frontal-I"
+ }
+ }
+ },
+ {
+ "name": "GapMap Frontal-to-Occipital (GapMap)",
+ "status": "right hemisphere",
+ "labelIndex": 32,
+ "ngId": "COLIN_V24_RIGHT_NG",
+ "rgb": [
+ 104,
+ 161,
+ 93
+ ],
+ "originDatasets": [
+ {
+ "filename": "GapMap Frontal-to-Occipital (GapMap) [v9.2, Colin 27, right hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "f3ae17b7-f994-4161-ba60-46a971610167"
+ }
+ ],
+ "_": {
+ "xml": {
+ "name": "GapMap Frontal-to-Occipital (GapMap)",
+ "id": "504",
+ "grayvalue": "32"
+ },
+ "dat": {
+ "colors": "504 104 161 93",
+ "names": "504 GapMap-Frontal-to-Occipital"
+ }
+ }
+ },
+ {
+ "name": "GapMap Temporal-to-Parietal (GapMap)",
+ "status": "right hemisphere",
+ "labelIndex": 60,
+ "ngId": "COLIN_V24_RIGHT_NG",
+ "rgb": [
+ 76,
+ 90,
+ 161
+ ],
+ "originDatasets": [
+ {
+ "filename": "GapMap Temporal-to-Parietal (GapMap) [v9.2, Colin 27, right hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "19838359-3e95-4334-aaa0-3c64e3a65c18"
+ }
+ ],
+ "_": {
+ "xml": {
+ "name": "GapMap Temporal-to-Parietal (GapMap)",
+ "id": "503",
+ "grayvalue": "60"
+ },
+ "dat": {
+ "colors": "503 76 90 161",
+ "names": "503 GapMap-Temporal-to-Parietal"
+ }
+ }
+ },
+ {
+ "name": "GapMap Frontal-II (GapMap)",
+ "status": "right hemisphere",
+ "labelIndex": 90,
+ "ngId": "COLIN_V24_RIGHT_NG",
+ "rgb": [
+ 255,
+ 135,
+ 15
+ ],
+ "originDatasets": [
+ {
+ "filename": "GapMap Frontal-II (GapMap) [v9.2, Colin 27, right hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "1db74846-624c-4be3-b4cc-71c18e94b119"
+ }
+ ],
+ "_": {
+ "xml": {
+ "name": "GapMap Frontal-II (GapMap)",
+ "id": "501",
+ "grayvalue": "90"
+ },
+ "dat": {
+ "colors": "501 255 135 15",
+ "names": "501 GapMap-Frontal-II"
+ }
+ }
+ },
+ {
+ "name": "GapMap Frontal-to-Temporal (GapMap)",
+ "status": "right hemisphere",
+ "labelIndex": 96,
+ "ngId": "COLIN_V24_RIGHT_NG",
+ "rgb": [
+ 161,
+ 24,
+ 74
+ ],
+ "originDatasets": [
+ {
+ "filename": "GapMap Frontal-to-Temporal (GapMap) [v9.2, Colin 27, right hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "6e0c6897-7ecf-451e-a9ad-d3e96bcc7b45"
+ }
+ ],
+ "_": {
+ "xml": {
+ "name": "GapMap Frontal-to-Temporal (GapMap)",
+ "id": "502",
+ "grayvalue": "96"
+ },
+ "dat": {
+ "colors": "502 161 24 74",
+ "names": "502 GapMap-Frontal-to-Temporal"
}
- ]
+ }
}
]
}
- ]
+ ],
+ "_": {
+ "@src": "https://gin.g-node.org/FZJ-INM1-BDA/20200926_JulichBrain-V2_4-Colin_ontology/raw/62115276a0287a3fea9ba5246469e40a259e26ec/output/nehuba-ui/julich-brain-v2_4-colin.json"
+ }
}
],
"properties": {
"name": "MNI Colin 27",
"description": "A stereotaxic average of 27 T1-weighted MRI scans of the same individual. (Holmes et al., 1998), mapped to fit the MNI305 space. Although not capturing brain variability, it is well established in neuroscience due to its high definition. HBP provides the JuBrain probabilistic cytoarchitectonic atlas (Amunts et al.) in this space."
}
-}
\ No newline at end of file
+}
\ No newline at end of file
diff --git a/src/res/ext/colinNehubaConfig.json b/src/res/ext/colinNehubaConfig.json
index a8b1d29df406129bb0f5623ad1acb3f4324fb2de..eaccca12dbb17e43c4f2268f8acdd66a57b41c3b 100644
--- a/src/res/ext/colinNehubaConfig.json
+++ b/src/res/ext/colinNehubaConfig.json
@@ -23,7 +23,7 @@
"mesh": {
"removeBasedOnNavigation": true,
"flipRemovedOctant": true,
- "surfaceParcellation": false
+ "surfaceParcellation": true
},
"removePerspectiveSlicesBackground": {
"mode": "=="
@@ -87,10 +87,10 @@
]
]
},
- "jubrain colin v18 left": {
+ "COLIN_V24_LEFT_NG": {
"type": "segmentation",
"visible": true,
- "source": "precomputed://https://neuroglancer.humanbrainproject.org/precomputed/JuBrain/18/colin27/left",
+ "source": "precomputed://https://neuroglancer.humanbrainproject.eu/precomputed/data-repo/20200926_JulichBrain-V2_4-Colin_MPM_mesh/precomputed/left",
"transform": [
[
1,
@@ -116,12 +116,15 @@
0,
1
]
- ]
+ ],
+ "_": {
+ "@src": "https://gin.g-node.org/FZJ-INM1-BDA/20200926_JulichBrain-V2_4-Colin_MPM_mesh/raw/745a37f64b6995a661f5a61287b4067df01687cb/output/nehuba-ui/left_config.json"
+ }
},
- "jubrain colin v18 right": {
+ "COLIN_V24_RIGHT_NG": {
"type": "segmentation",
"visible": true,
- "source": "precomputed://https://neuroglancer.humanbrainproject.org/precomputed/JuBrain/18/colin27/right",
+ "source": "precomputed://https://neuroglancer.humanbrainproject.eu/precomputed/data-repo/20200926_JulichBrain-V2_4-Colin_MPM_mesh/precomputed/right",
"transform": [
[
1,
@@ -147,7 +150,10 @@
0,
1
]
- ]
+ ],
+ "_": {
+ "@src": "https://gin.g-node.org/FZJ-INM1-BDA/20200926_JulichBrain-V2_4-Colin_MPM_mesh/raw/745a37f64b6995a661f5a61287b4067df01687cb/output/nehuba-ui/right_config.json"
+ }
}
},
"navigation": {
diff --git a/src/services/effect/effect.spec.ts b/src/services/effect/effect.spec.ts
index d62f8d8b0efb499858aa10443d92809c34b94ba1..3ca67f80459bfe76a2ffa296d3829d7d84434f91 100644
--- a/src/services/effect/effect.spec.ts
+++ b/src/services/effect/effect.spec.ts
@@ -10,31 +10,7 @@ import { defaultRootState } from '../stateStore.service'
const colinsJson = require('!json-loader!../../res/ext/colin.json')
-
-const hoc1 = {
- name: "Area hOc1 (V1, 17, CalcS) - left hemisphere",
- rgb: [
- 190,
- 132,
- 147,
- ],
- labelIndex: 8,
- ngId: "jubrain colin v18 left",
- children: [],
- status: "publicP",
- position: [
- -8533787,
- -84646549,
- 1855106,
- ],
- originDatasets: [
- {
- kgSchema: "minds/core/dataset/v1.0.0",
- kgId: "5c669b77-c981-424a-858d-fe9f527dbc07",
- filename: "Area hOc1 (V1, 17, CalcS) [v2.4, Colin 27, left hemisphere]"
- }
- ],
-}
+const COLIN_JULICHBRAIN_LAYER_NAME = `COLIN_V24_LEFT_NG`
describe('effect.ts', () => {
describe('getGetRegionFromLabelIndexId', () => {
@@ -46,8 +22,10 @@ describe('effect.ts', () => {
updated: true,
},
})
- const fetchedRegion = getRegionFromlabelIndexId({ labelIndexId: 'jubrain colin v18 left#8' })
- expect(fetchedRegion).toEqual(hoc1)
+ const fetchedRegion = getRegionFromlabelIndexId({ labelIndexId: `${COLIN_JULICHBRAIN_LAYER_NAME}#116` })
+ expect(fetchedRegion).toBeTruthy()
+ expect(fetchedRegion.fullId.kg.kgId).toEqual('b09aaa77-f41b-4008-b8b9-f984b0417cf3')
+
})
})
diff --git a/src/services/state/uiState.store.helper.ts b/src/services/state/uiState.store.helper.ts
index 2f712457a8b99425e08c27d7ac02ded588457eee..d67ced3cd3ce1f96000cc77fbfa5ab9402fc5349 100644
--- a/src/services/state/uiState.store.helper.ts
+++ b/src/services/state/uiState.store.helper.ts
@@ -36,6 +36,7 @@ export interface IDatasetPreviewData{
datasetSchema?: string
datasetId: string
filename: string
+ datasetSchema?: string
}
export type TypeOpenedWidget = {
diff --git a/src/ui/databrowserModule/preview/previewComponentWrapper/previewCW.component.ts b/src/ui/databrowserModule/preview/previewComponentWrapper/previewCW.component.ts
index 379007832268c0b019bac4f35d102873df7524da..c5f8d6396c5e5fdf576f9c6f1a75b3e99bba6203 100644
--- a/src/ui/databrowserModule/preview/previewComponentWrapper/previewCW.component.ts
+++ b/src/ui/databrowserModule/preview/previewComponentWrapper/previewCW.component.ts
@@ -80,6 +80,8 @@ export class PreviewComponentWrapper{
this.backendUrl = backendUrl
this.datasetName = datasetName
}
+
+ this.backendUrl = this.backendUrl || DS_PREVIEW_URL
}
public downloadHref: SafeResourceUrl
diff --git a/src/ui/nehubaContainer/statusCard/statusCard.component.spec.ts b/src/ui/nehubaContainer/statusCard/statusCard.component.spec.ts
new file mode 100644
index 0000000000000000000000000000000000000000..576ee7a25a65cae045293e94cc2991be9874f18a
--- /dev/null
+++ b/src/ui/nehubaContainer/statusCard/statusCard.component.spec.ts
@@ -0,0 +1,110 @@
+import { async, TestBed } from "@angular/core/testing"
+import { CommonModule } from "@angular/common"
+import { AngularMaterialModule } from "src/ui/sharedModules/angularMaterial.module"
+import { StatusCardComponent } from "./statusCard.component"
+import { Directive, Component } from "@angular/core"
+import { of } from "rxjs"
+import { ShareModule } from "src/share"
+import { StateModule } from "src/state"
+import { provideMockStore } from "@ngrx/store/testing"
+import { By } from "@angular/platform-browser"
+import { MatSlideToggle } from "@angular/material/slide-toggle"
+import { NoopAnimationsModule } from "@angular/platform-browser/animations"
+import { FormsModule, ReactiveFormsModule } from "@angular/forms"
+
+@Directive({
+ selector: '[iav-auth-authState]',
+ exportAs: 'iavAuthAuthState'
+})
+
+class MockIavAuthState{
+ user$ = of(null)
+}
+
+@Component({
+ selector: 'signin-modal',
+ template: '',
+})
+
+class MockSigninModal{}
+
+describe('> statusCard.component.ts', () => {
+ describe('> StatusCardComponent', () => {
+ beforeEach(async(() => {
+ TestBed.configureTestingModule({
+ imports: [
+ CommonModule,
+ AngularMaterialModule,
+ ShareModule,
+ StateModule,
+ FormsModule,
+ ReactiveFormsModule,
+ NoopAnimationsModule,
+ ],
+ declarations: [
+ StatusCardComponent,
+ MockIavAuthState,
+ MockSigninModal,
+ ],
+ providers: [
+ provideMockStore({
+ initialState: {
+ viewerState: {
+ fetchedTemplates: []
+ }
+ }
+ })
+ ]
+ }).compileComponents()
+ }))
+ it('> can be instantiated', () => {
+ const fixture = TestBed.createComponent(StatusCardComponent)
+ expect(fixture.debugElement.nativeElement).toBeTruthy()
+ })
+
+ it('> toggle can be found', () => {
+
+ const fixture = TestBed.createComponent(StatusCardComponent)
+ fixture.detectChanges()
+ const slider = fixture.debugElement.query( By.directive(MatSlideToggle) )
+ expect(slider).toBeTruthy()
+ })
+
+ it('> toggling voxel/real toggle also toggles statusPanelRealSpace flag', () => {
+
+ const fixture = TestBed.createComponent(StatusCardComponent)
+ fixture.detectChanges()
+ const prevFlag = fixture.componentInstance.statusPanelRealSpace
+ const sliderEl = fixture.debugElement.query( By.directive(MatSlideToggle) )
+ const slider = sliderEl.injector.get(MatSlideToggle)
+ slider.toggle()
+ fixture.detectChanges()
+ expect(fixture.componentInstance.statusPanelRealSpace).toEqual(!prevFlag)
+ })
+
+ describe('> textNavigationTo', () => {
+ it('> takes into account of statusPanelRealSpace panel', () => {
+ const fixture = TestBed.createComponent(StatusCardComponent)
+ fixture.detectChanges()
+ const setNavigationStateSpy = jasmine.createSpy('setNavigationState')
+ fixture.componentInstance.nehubaViewer = {
+ setNavigationState: setNavigationStateSpy
+ } as any
+
+ fixture.componentInstance.statusPanelRealSpace = true
+ fixture.componentInstance.textNavigateTo('1, 0, 0')
+ expect(setNavigationStateSpy).toHaveBeenCalledWith({
+ position: [1e6, 0, 0],
+ positionReal: true
+ })
+
+ fixture.componentInstance.statusPanelRealSpace = false
+ fixture.componentInstance.textNavigateTo('1, 0, 0')
+ expect(setNavigationStateSpy).toHaveBeenCalledWith({
+ position: [1, 0, 0],
+ positionReal: false
+ })
+ })
+ })
+ })
+})
diff --git a/src/ui/nehubaContainer/statusCard/statusCard.component.ts b/src/ui/nehubaContainer/statusCard/statusCard.component.ts
index 9f2ca8ae575841758c2639b418f98575658957cc..b89bc87da5e7106d83871576be951262e9d49464 100644
--- a/src/ui/nehubaContainer/statusCard/statusCard.component.ts
+++ b/src/ui/nehubaContainer/statusCard/statusCard.component.ts
@@ -9,6 +9,7 @@ import { MatBottomSheet } from "@angular/material/bottom-sheet";
import { MatDialog } from "@angular/material/dialog";
import { ARIA_LABELS } from 'common/constants'
import { PureContantService } from "src/util";
+import { FormControl } from "@angular/forms";
@Component({
selector : 'ui-status-card',
@@ -65,6 +66,12 @@ export class StatusCardComponent implements OnInit, OnChanges{
this.selectedTemplateRoot = template.find(t => t.name === this.selectedTemplateName)
})
)
+
+ this.subscriptions.push(
+ this.statusPanelFormCtrl.valueChanges.subscribe(val => {
+ this.statusPanelRealSpace = val
+ })
+ )
}
ngOnChanges() {
@@ -104,8 +111,11 @@ export class StatusCardComponent implements OnInit, OnChanges{
)
}
- public statusPanelRealSpace$ = new BehaviorSubject(true)
- public statusPanelRealSpace: boolean = true
+ statusPanelFormCtrl = new FormControl(true, [])
+ public statusPanelRealSpace = true
+ public statusPanelRealSpace$ = this.statusPanelFormCtrl.valueChanges.pipe(
+ startWith(true)
+ )
public textNavigateTo(string: string) {
if (string.split(/[\s|,]+/).length >= 3 && string.split(/[\s|,]+/).slice(0, 3).every(entry => !isNaN(Number(entry.replace(/mm/, ''))))) {
diff --git a/src/ui/nehubaContainer/statusCard/statusCard.template.html b/src/ui/nehubaContainer/statusCard/statusCard.template.html
index 5bcfe73e32674811245c8d4a21e8b333ac32a0c5..17d4fe7cfd9f6c5c18cedd1f3471b320934b1e62 100644
--- a/src/ui/nehubaContainer/statusCard/statusCard.template.html
+++ b/src/ui/nehubaContainer/statusCard/statusCard.template.html
@@ -46,8 +46,7 @@
</span>
<mat-slide-toggle
- [checked]="statusPanelRealSpace$ | async"
- (change)="statusPanelRealSpace$.next($event.checked)"
+ [formControl]="statusPanelFormCtrl"
class="pl-2 pr-2">
</mat-slide-toggle>
diff --git a/src/ui/viewerStateController/viewerStateCMini/viewerStateMini.template.html b/src/ui/viewerStateController/viewerStateCMini/viewerStateMini.template.html
index 98a2c129a419c41cfed6ae251645590656eb1858..9224c4acce80974954adb66865066faf538a70eb 100644
--- a/src/ui/viewerStateController/viewerStateCMini/viewerStateMini.template.html
+++ b/src/ui/viewerStateController/viewerStateCMini/viewerStateMini.template.html
@@ -3,7 +3,7 @@
{{ templateSelected.name }}
</div>
<div *ngIf="parcellationSelected$ | async as parcellationSelected">
- {{ parcellationSelected.name }}
+ {{ parcellationSelected.displayName || parcellationSelected.name }}
</div>
<!-- selected parcellation regions -->