diff --git a/.eslintignore b/.eslintignore
index 6de2f63d7e98adaa0c32f09013e16a7d57485681..b699cf19c45c19bee0ac8091aa741651b2589b85 100644
--- a/.eslintignore
+++ b/.eslintignore
@@ -1 +1,3 @@
-*.spec.ts
\ No newline at end of file
+*.spec.ts
+src/atlasComponents/sapi/schema.ts
+**/*.stories.ts
\ No newline at end of file
diff --git a/src/atlasComponents/sapi/sapi.service.ts b/src/atlasComponents/sapi/sapi.service.ts
index 07fb77d1567562de156b73b4081ada8d86897b5e..083bfcf6806799ac1185424f252e99127eab6919 100644
--- a/src/atlasComponents/sapi/sapi.service.ts
+++ b/src/atlasComponents/sapi/sapi.service.ts
@@ -24,7 +24,7 @@ export class SAPI{
registry = {
_map: {} as Record<string, {
- func: (...arg: any[]) => RegistryType,
+ func: (...arg: any[]) => RegistryType
args: string[]
}>,
get<T>(id: string): T {
diff --git a/src/atlasComponents/sapi/schema.ts b/src/atlasComponents/sapi/schema.ts
index 5ba071c5030d9ca90c461b56fcf82110b14e5eb1..c6b5bbca49d58c286aa0381ce8752ce59b4071ac 100644
--- a/src/atlasComponents/sapi/schema.ts
+++ b/src/atlasComponents/sapi/schema.ts
@@ -6,93 +6,93 @@
export interface paths {
"/atlases/{atlas_id}/parcellations/{parcellation_id}/regions": {
/** Returns all regions for a given parcellation id. */
- get: operations["get_all_regions_from_atlas_parc_space_atlases__atlas_id__parcellations__parcellation_id__regions_get"];
- };
+ get: operations["get_all_regions_from_atlas_parc_space_atlases__atlas_id__parcellations__parcellation_id__regions_get"]
+ }
"/atlases/{atlas_id}/parcellations/{parcellation_id}/regions/{region_id}/features": {
/** Returns all regional features for a region. */
- get: operations["get_all_features_for_region_atlases__atlas_id__parcellations__parcellation_id__regions__region_id__features_get"];
- };
+ get: operations["get_all_features_for_region_atlases__atlas_id__parcellations__parcellation_id__regions__region_id__features_get"]
+ }
"/atlases/{atlas_id}/parcellations/{parcellation_id}/regions/{region_id}/features/{feature_id}": {
/** Returns a feature for a region, as defined by by the modality and feature ID */
- get: operations["get_regional_modality_by_id_atlases__atlas_id__parcellations__parcellation_id__regions__region_id__features__feature_id__get"];
- };
+ get: operations["get_regional_modality_by_id_atlases__atlas_id__parcellations__parcellation_id__regions__region_id__features__feature_id__get"]
+ }
"/atlases/{atlas_id}/parcellations/{parcellation_id}/regions/{region_id}/regional_map/info": {
/** Returns information about a regional map for given region name. */
- get: operations["get_regional_map_info_atlases__atlas_id__parcellations__parcellation_id__regions__region_id__regional_map_info_get"];
- };
+ get: operations["get_regional_map_info_atlases__atlas_id__parcellations__parcellation_id__regions__region_id__regional_map_info_get"]
+ }
"/atlases/{atlas_id}/parcellations/{parcellation_id}/regions/{region_id}/regional_map/map": {
/** Returns a regional map for given region name. */
- get: operations["get_regional_map_file_atlases__atlas_id__parcellations__parcellation_id__regions__region_id__regional_map_map_get"];
- };
+ get: operations["get_regional_map_file_atlases__atlas_id__parcellations__parcellation_id__regions__region_id__regional_map_map_get"]
+ }
"/atlases/{atlas_id}/parcellations/{parcellation_id}/regions/{region_id}": {
- get: operations["get_single_region_detail_atlases__atlas_id__parcellations__parcellation_id__regions__region_id__get"];
- };
+ get: operations["get_single_region_detail_atlases__atlas_id__parcellations__parcellation_id__regions__region_id__get"]
+ }
"/atlases/{atlas_id}/parcellations": {
/** Returns all parcellations that are defined in the siibra client for given atlas. */
- get: operations["get_all_parcellations_atlases__atlas_id__parcellations_get"];
- };
+ get: operations["get_all_parcellations_atlases__atlas_id__parcellations_get"]
+ }
"/atlases/{atlas_id}/parcellations/{parcellation_id}/features/{feature_id}": {
/** Returns a global feature for a specific modality id. */
- get: operations["get_single_global_feature_detail_atlases__atlas_id__parcellations__parcellation_id__features__feature_id__get"];
- };
+ get: operations["get_single_global_feature_detail_atlases__atlas_id__parcellations__parcellation_id__features__feature_id__get"]
+ }
"/atlases/{atlas_id}/parcellations/{parcellation_id}/features": {
/** Returns all global features for a parcellation. */
- get: operations["get_global_features_names_atlases__atlas_id__parcellations__parcellation_id__features_get"];
- };
+ get: operations["get_global_features_names_atlases__atlas_id__parcellations__parcellation_id__features_get"]
+ }
"/atlases/{atlas_id}/parcellations/{parcellation_id}/volumes": {
/** Returns one parcellation for given id. */
- get: operations["get_volumes_by_id_atlases__atlas_id__parcellations__parcellation_id__volumes_get"];
- };
+ get: operations["get_volumes_by_id_atlases__atlas_id__parcellations__parcellation_id__volumes_get"]
+ }
"/atlases/{atlas_id}/parcellations/{parcellation_id}": {
/** Returns one parcellation for given id. */
- get: operations["get_parcellation_by_id_atlases__atlas_id__parcellations__parcellation_id__get"];
- };
+ get: operations["get_parcellation_by_id_atlases__atlas_id__parcellations__parcellation_id__get"]
+ }
"/atlases/{atlas_id}/spaces": {
/** Returns all spaces that are defined in the siibra client. */
- get: operations["get_all_spaces_atlases__atlas_id__spaces_get"];
- };
+ get: operations["get_all_spaces_atlases__atlas_id__spaces_get"]
+ }
"/atlases/{atlas_id}/spaces/{space_id}/templates": {
/** Returns a template for a given space id. */
- get: operations["get_template_by_space_id_atlases__atlas_id__spaces__space_id__templates_get"];
- };
+ get: operations["get_template_by_space_id_atlases__atlas_id__spaces__space_id__templates_get"]
+ }
"/atlases/{atlas_id}/spaces/{space_id}/parcellation_maps": {
/** Returns all parcellation maps for a given space id. */
- get: operations["get_parcellation_map_for_space_atlases__atlas_id__spaces__space_id__parcellation_maps_get"];
- };
+ get: operations["get_parcellation_map_for_space_atlases__atlas_id__spaces__space_id__parcellation_maps_get"]
+ }
"/atlases/{atlas_id}/spaces/{space_id}/features/{feature_id}": {
/**
* Get a detailed view on a single spatial feature.
* A parcellation id and region id can be provided optional to get more details.
*/
- get: operations["get_single_spatial_feature_detail_atlases__atlas_id__spaces__space_id__features__feature_id__get"];
- };
+ get: operations["get_single_spatial_feature_detail_atlases__atlas_id__spaces__space_id__features__feature_id__get"]
+ }
"/atlases/{atlas_id}/spaces/{space_id}/features": {
/** Return all possible feature names and links to get more details */
- get: operations["get_spatial_features_from_space_atlases__atlas_id__spaces__space_id__features_get"];
- };
+ get: operations["get_spatial_features_from_space_atlases__atlas_id__spaces__space_id__features_get"]
+ }
"/atlases/{atlas_id}/spaces/{space_id}/volumes": {
- get: operations["get_one_space_volumes_atlases__atlas_id__spaces__space_id__volumes_get"];
- };
+ get: operations["get_one_space_volumes_atlases__atlas_id__spaces__space_id__volumes_get"]
+ }
"/atlases/{atlas_id}/spaces/{space_id}": {
/** Returns one space for given id, with links to further resources */
- get: operations["get_one_space_by_id_atlases__atlas_id__spaces__space_id__get"];
- };
+ get: operations["get_one_space_by_id_atlases__atlas_id__spaces__space_id__get"]
+ }
"/atlases": {
/** Get all atlases known by siibra. */
- get: operations["get_all_atlases_atlases_get"];
- };
+ get: operations["get_all_atlases_atlases_get"]
+ }
"/atlases/{atlas_id}": {
/** Get more information for a specific atlas with links to further objects. */
- get: operations["get_atlas_by_id_atlases__atlas_id__get"];
- };
+ get: operations["get_atlas_by_id_atlases__atlas_id__get"]
+ }
"/genes": {
/** Return all genes (name, acronym) in siibra */
- get: operations["get_gene_names_genes_get"];
- };
+ get: operations["get_gene_names_genes_get"]
+ }
"/features": {
/** Return all possible modalities */
- get: operations["get_all_available_modalities_features_get"];
- };
+ get: operations["get_all_available_modalities_features_get"]
+ }
}
export interface components {
@@ -103,1205 +103,1205 @@ export interface components {
* Content Type
* @default application/octet-stream
*/
- content_type?: string;
+ content_type?: string
/**
* Content Encoding
* @default gzip; base64
*/
- content_encoding?: string;
+ content_encoding?: string
/** X-Width */
- "x-width": number;
+ "x-width": number
/** X-Height */
- "x-height": number;
+ "x-height": number
/** X-Channel */
- "x-channel": number;
+ "x-channel": number
/** Dtype */
- dtype: string;
+ dtype: string
/** Content */
- content: string;
- };
+ content: string
+ }
/** AxesOrigin */
AxesOrigin: {
/**
* @Context
* @default [object Object]
*/
- "@context"?: components["schemas"]["VocabModel"];
+ "@context"?: components["schemas"]["VocabModel"]
/**
* typeOfUncertainty
* @description Distinct technique used to quantify the uncertainty of a measurement.
*/
- typeOfUncertainty?: unknown;
+ typeOfUncertainty?: unknown
/**
* uncertainty
* @description Quantitative value range defining the uncertainty of a measurement.
*/
- uncertainty?: number[];
+ uncertainty?: number[]
/**
* unit
* @description Determinate quantity adopted as a standard of measurement.
*/
- unit?: unknown;
+ unit?: unknown
/**
* value
* @description Entry for a property.
*/
- value: number;
- };
+ value: number
+ }
/** BaseDatasetJsonModel */
BaseDatasetJsonModel: {
/** @Id */
- "@id": string;
+ "@id": string
/**
* Type
* @constant
*/
- type?: "siibra/core/dataset";
- metadata: components["schemas"]["siibra__openminds__core__v4__products__datasetVersion__Model"];
+ type?: "siibra/core/dataset"
+ metadata: components["schemas"]["siibra__openminds__core__v4__products__datasetVersion__Model"]
/** Urls */
- urls: components["schemas"]["Url"][];
- };
+ urls: components["schemas"]["Url"][]
+ }
/** BestViewPoint */
BestViewPoint: {
/**
* @Context
* @default [object Object]
*/
- "@context"?: components["schemas"]["VocabModel"];
+ "@context"?: components["schemas"]["VocabModel"]
/**
* coordinateSpace
* @description Two or three dimensional geometric setting.
*/
- coordinateSpace: unknown;
+ coordinateSpace: unknown
/**
* Coordinates
* @description Structured information on a quantitative value.
*/
- coordinates: components["schemas"]["siibra__openminds__SANDS__v3__atlas__parcellationEntityVersion__Coordinates"][];
- };
+ coordinates: components["schemas"]["siibra__openminds__SANDS__v3__atlas__parcellationEntityVersion__Coordinates"][]
+ }
/** BoundingBoxModel */
BoundingBoxModel: {
/** Space */
- space: { [key: string]: string };
- center: components["schemas"]["siibra__openminds__SANDS__v3__miscellaneous__coordinatePoint__Model"];
- minpoint: components["schemas"]["siibra__openminds__SANDS__v3__miscellaneous__coordinatePoint__Model"];
- maxpoint: components["schemas"]["siibra__openminds__SANDS__v3__miscellaneous__coordinatePoint__Model"];
+ space: { [key: string]: string }
+ center: components["schemas"]["siibra__openminds__SANDS__v3__miscellaneous__coordinatePoint__Model"]
+ minpoint: components["schemas"]["siibra__openminds__SANDS__v3__miscellaneous__coordinatePoint__Model"]
+ maxpoint: components["schemas"]["siibra__openminds__SANDS__v3__miscellaneous__coordinatePoint__Model"]
/** Shape */
- shape: number[];
+ shape: number[]
/** Is Planar */
- is_planar: boolean;
- };
+ is_planar: boolean
+ }
/** ConnectivityMatrixDataModel */
ConnectivityMatrixDataModel: {
/** @Id */
- "@id": string;
+ "@id": string
/**
* Type
* @constant
*/
- type?: "siibra/features/connectivity";
+ type?: "siibra/features/connectivity"
/** Name */
- name: string;
+ name: string
/** Parcellations */
- parcellations: { [key: string]: string }[];
- matrix?: components["schemas"]["NpArrayDataModel"];
+ parcellations: { [key: string]: string }[]
+ matrix?: components["schemas"]["NpArrayDataModel"]
/** Columns */
- columns?: string[];
- };
+ columns?: string[]
+ }
/** DatasetJsonModel */
DatasetJsonModel: {
/** @Id */
- "@id": string;
+ "@id": string
/**
* Type
* @constant
*/
- type?: "siibra/core/dataset";
- metadata: components["schemas"]["siibra__openminds__core__v4__products__datasetVersion__Model"];
+ type?: "siibra/core/dataset"
+ metadata: components["schemas"]["siibra__openminds__core__v4__products__datasetVersion__Model"]
/** Urls */
- urls: components["schemas"]["Url"][];
- };
+ urls: components["schemas"]["Url"][]
+ }
/** FingerPrintDataModel */
FingerPrintDataModel: {
/** Mean */
- mean: number;
+ mean: number
/** Std */
- std: number;
+ std: number
/** Unit */
- unit: string;
- };
+ unit: string
+ }
/** HTTPValidationError */
HTTPValidationError: {
/** Detail */
- detail?: components["schemas"]["ValidationError"][];
- };
+ detail?: components["schemas"]["ValidationError"][]
+ }
/** HasAnnotation */
HasAnnotation: {
/**
* @Context
* @default [object Object]
*/
- "@context"?: components["schemas"]["VocabModel"];
+ "@context"?: components["schemas"]["VocabModel"]
/**
* Bestviewpoint
* @description Structured information on a coordinate point.
*/
- bestViewPoint?: components["schemas"]["BestViewPoint"];
+ bestViewPoint?: components["schemas"]["BestViewPoint"]
/**
* criteria
* @description Aspects or standards on which a judgement or decision is based.
*/
- criteria?: unknown;
+ criteria?: unknown
/**
* criteriaQualityType
* @description Distinct class that defines how the judgement or decision was made for a particular criteria.
*/
- criteriaQualityType: unknown;
+ criteriaQualityType: unknown
/**
* displayColor
* @description Preferred coloring.
*/
- displayColor?: string;
+ displayColor?: string
/**
* inspiredBy
* @description Reference to an inspiring element.
*/
- inspiredBy?: unknown[];
+ inspiredBy?: unknown[]
/**
* internalIdentifier
* @description Term or code that identifies someone or something within a particular product.
*/
- internalIdentifier: string;
+ internalIdentifier: string
/**
* laterality
* @description Differentiation between a pair of lateral homologous parts of the body.
*/
- laterality?: unknown[];
+ laterality?: unknown[]
/**
* visualizedIn
* @description Reference to an image in which something is visible.
*/
- visualizedIn?: unknown;
- };
+ visualizedIn?: unknown
+ }
/** HasTerminologyVersion */
HasTerminologyVersion: {
/**
* @Context
* @default [object Object]
*/
- "@context"?: components["schemas"]["VocabModel"];
+ "@context"?: components["schemas"]["VocabModel"]
/**
* definedIn
* @description Reference to a file instance in which something is stored.
*/
- definedIn?: unknown[];
+ definedIn?: unknown[]
/** hasEntityVersion */
- hasEntityVersion: unknown[];
+ hasEntityVersion: unknown[]
/**
* ontologyIdentifier
* @description Term or code used to identify something or someone registered within a particular ontology.
*/
- ontologyIdentifier?: string[];
- };
+ ontologyIdentifier?: string[]
+ }
/** HrefModel */
HrefModel: {
/** Href */
- href: string;
- };
+ href: string
+ }
/** IEEGContactPointModel */
IEEGContactPointModel: {
/** Id */
- id: string;
- point: components["schemas"]["siibra__openminds__SANDS__v3__miscellaneous__coordinatePoint__Model"];
- };
+ id: string
+ point: components["schemas"]["siibra__openminds__SANDS__v3__miscellaneous__coordinatePoint__Model"]
+ }
/** IEEGElectrodeModel */
IEEGElectrodeModel: {
/** Electrode Id */
- electrode_id: string;
+ electrode_id: string
/** Contact Points */
contact_points: {
- [key: string]: components["schemas"]["IEEGContactPointModel"];
- };
- };
+ [key: string]: components["schemas"]["IEEGContactPointModel"]
+ }
+ }
/** IEEGSessionModel */
IEEGSessionModel: {
/** @Id */
- "@id": string;
+ "@id": string
/**
* Type
* @constant
*/
- type?: "siibra/features/ieegSession";
- dataset: components["schemas"]["DatasetJsonModel"];
+ type?: "siibra/features/ieegSession"
+ dataset: components["schemas"]["DatasetJsonModel"]
/** Sub Id */
- sub_id: string;
+ sub_id: string
/** Electrodes */
electrodes: {
- [key: string]: components["schemas"]["IEEGElectrodeModel"];
- };
- };
+ [key: string]: components["schemas"]["IEEGElectrodeModel"]
+ }
+ }
/** NeurotransmitterMarkupModel */
NeurotransmitterMarkupModel: {
/** Latex */
- latex: string;
+ latex: string
/** Markdown */
- markdown: string;
+ markdown: string
/** Name */
- name: string;
+ name: string
/** Label */
- label: string;
- };
+ label: string
+ }
/** NiiMetadataModel */
NiiMetadataModel: {
/** Min */
- min: number;
+ min: number
/** Max */
- max: number;
- };
+ max: number
+ }
/** NpArrayDataModel */
NpArrayDataModel: {
/**
* Content Type
* @default application/octet-stream
*/
- content_type?: string;
+ content_type?: string
/**
* Content Encoding
* @default gzip; base64
*/
- content_encoding?: string;
+ content_encoding?: string
/** X-Width */
- "x-width": number;
+ "x-width": number
/** X-Height */
- "x-height": number;
+ "x-height": number
/** X-Channel */
- "x-channel": number;
+ "x-channel": number
/** Dtype */
- dtype: string;
+ dtype: string
/** Content */
- content: string;
- };
+ content: string
+ }
/** ProfileDataModel */
ProfileDataModel: {
- density: components["schemas"]["NpArrayDataModel"];
+ density: components["schemas"]["NpArrayDataModel"]
/** Unit */
- unit: string;
- };
+ unit: string
+ }
/** QuantitativeOverlapItem */
QuantitativeOverlapItem: {
/**
* @Context
* @default [object Object]
*/
- "@context"?: components["schemas"]["VocabModel"];
+ "@context"?: components["schemas"]["VocabModel"]
/**
* typeOfUncertainty
* @description Distinct technique used to quantify the uncertainty of a measurement.
*/
- typeOfUncertainty?: unknown;
+ typeOfUncertainty?: unknown
/**
* uncertainty
* @description Quantitative value range defining the uncertainty of a measurement.
*/
- uncertainty?: number[];
+ uncertainty?: number[]
/**
* unit
* @description Determinate quantity adopted as a standard of measurement.
*/
- unit?: unknown;
+ unit?: unknown
/**
* value
* @description Entry for a property.
*/
- value: number;
- };
+ value: number
+ }
/** QuantitativeOverlapItem1 */
QuantitativeOverlapItem1: {
/**
* @Context
* @default [object Object]
*/
- "@context"?: components["schemas"]["VocabModel"];
+ "@context"?: components["schemas"]["VocabModel"]
/**
* maxValue
* @description Greatest quantity attained or allowed.
*/
- maxValue: number;
+ maxValue: number
/** maxValueUnit */
- maxValueUnit?: unknown;
+ maxValueUnit?: unknown
/**
* minValue
* @description Smallest quantity attained or allowed.
*/
- minValue: number;
+ minValue: number
/** minValueUnit */
- minValueUnit?: unknown;
- };
+ minValueUnit?: unknown
+ }
/** ReceptorDataModel */
ReceptorDataModel: {
/** Autoradiographs */
autoradiographs: {
- [key: string]: components["schemas"]["AutoradiographyDataModel"];
- };
+ [key: string]: components["schemas"]["AutoradiographyDataModel"]
+ }
/** Profiles */
- profiles: { [key: string]: components["schemas"]["ProfileDataModel"] };
+ profiles: { [key: string]: components["schemas"]["ProfileDataModel"] }
/** Fingerprints */
fingerprints: {
- [key: string]: components["schemas"]["FingerPrintDataModel"];
- };
+ [key: string]: components["schemas"]["FingerPrintDataModel"]
+ }
/** Receptor Symbols */
receptor_symbols: {
- [key: string]: components["schemas"]["SymbolMarkupClass"];
- };
- };
+ [key: string]: components["schemas"]["SymbolMarkupClass"]
+ }
+ }
/** ReceptorDatasetModel */
ReceptorDatasetModel: {
/** @Id */
- "@id": string;
+ "@id": string
/**
* Type
* @constant
*/
- type?: "siibra/features/receptor";
- metadata: components["schemas"]["siibra__openminds__core__v4__products__datasetVersion__Model"];
+ type?: "siibra/features/receptor"
+ metadata: components["schemas"]["siibra__openminds__core__v4__products__datasetVersion__Model"]
/** Urls */
- urls: components["schemas"]["Url"][];
- data?: components["schemas"]["ReceptorDataModel"];
- };
+ urls: components["schemas"]["Url"][]
+ data?: components["schemas"]["ReceptorDataModel"]
+ }
/** ReceptorMarkupModel */
ReceptorMarkupModel: {
/** Latex */
- latex: string;
+ latex: string
/** Markdown */
- markdown: string;
+ markdown: string
/** Name */
- name: string;
- };
+ name: string
+ }
/** RelationAssessmentItem */
RelationAssessmentItem: {
/**
* @Context
* @default [object Object]
*/
- "@context"?: components["schemas"]["VocabModel"];
+ "@context"?: components["schemas"]["VocabModel"]
/**
* criteria
* @description Aspects or standards on which a judgement or decision is based.
*/
- criteria?: unknown;
+ criteria?: unknown
/**
* inRelationTo
* @description Reference to a related element.
*/
- inRelationTo: unknown;
+ inRelationTo: unknown
/**
* qualitativeOverlap
* @description Semantic characterization of how much two things occupy the same space.
*/
- qualitativeOverlap: unknown;
- };
+ qualitativeOverlap: unknown
+ }
/** RelationAssessmentItem1 */
RelationAssessmentItem1: {
/**
* @Context
* @default [object Object]
*/
- "@context"?: components["schemas"]["VocabModel"];
+ "@context"?: components["schemas"]["VocabModel"]
/**
* criteria
* @description Aspects or standards on which a judgement or decision is based.
*/
- criteria?: unknown;
+ criteria?: unknown
/**
* inRelationTo
* @description Reference to a related element.
*/
- inRelationTo: unknown;
+ inRelationTo: unknown
/** Quantitativeoverlap */
quantitativeOverlap: Partial<
components["schemas"]["QuantitativeOverlapItem"]
> &
- Partial<components["schemas"]["QuantitativeOverlapItem1"]>;
- };
+ Partial<components["schemas"]["QuantitativeOverlapItem1"]>
+ }
/** SapiAtlasModel */
SapiAtlasModel: {
/** Links */
- links: { [key: string]: components["schemas"]["HrefModel"] };
+ links: { [key: string]: components["schemas"]["HrefModel"] }
/** @Id */
- "@id": string;
+ "@id": string
/** Name */
- name: string;
+ name: string
/**
* @Type
* @constant
*/
- "@type"?: "juelich/iav/atlas/v1.0.0";
+ "@type"?: "juelich/iav/atlas/v1.0.0"
/** Spaces */
- spaces: components["schemas"]["SiibraAtIdModel"][];
+ spaces: components["schemas"]["SiibraAtIdModel"][]
/** Parcellations */
- parcellations: components["schemas"]["SiibraAtIdModel"][];
- species: components["schemas"]["SpeciesModel"];
- };
+ parcellations: components["schemas"]["SiibraAtIdModel"][]
+ species: components["schemas"]["SpeciesModel"]
+ }
/** SapiParcellationModel */
SapiParcellationModel: {
/** Links */
- links: { [key: string]: components["schemas"]["HrefModel"] };
+ links: { [key: string]: components["schemas"]["HrefModel"] }
/** @Id */
- "@id": string;
+ "@id": string
/**
* @Type
* @constant
*/
- "@type"?: "minds/core/parcellationatlas/v1.0.0";
+ "@type"?: "minds/core/parcellationatlas/v1.0.0"
/** Name */
- name: string;
+ name: string
/** Modality */
- modality?: string;
+ modality?: string
/** Datasets */
- datasets: components["schemas"]["DatasetJsonModel"][];
+ datasets: components["schemas"]["DatasetJsonModel"][]
/** Brainatlasversions */
- brainAtlasVersions: components["schemas"]["siibra__openminds__SANDS__v3__atlas__brainAtlasVersion__Model"][];
- version?: components["schemas"]["SiibraParcellationVersionModel"];
- };
+ brainAtlasVersions: components["schemas"]["siibra__openminds__SANDS__v3__atlas__brainAtlasVersion__Model"][]
+ version?: components["schemas"]["SiibraParcellationVersionModel"]
+ }
/** SapiSpaceModel */
SapiSpaceModel: {
/** Links */
- links: { [key: string]: components["schemas"]["HrefModel"] };
+ links: { [key: string]: components["schemas"]["HrefModel"] }
/**
* @Context
* @default [object Object]
*/
- "@context"?: components["schemas"]["VocabModel"];
+ "@context"?: components["schemas"]["VocabModel"]
/**
* @Id
* @description Metadata node identifier.
*/
- "@id": string;
+ "@id": string
/** @Type */
- "@type": string;
+ "@type": string
/**
* anatomicalAxesOrientation
* @description Relation between reference planes used in anatomy and mathematics.
*/
- anatomicalAxesOrientation: { [key: string]: unknown };
+ anatomicalAxesOrientation: { [key: string]: unknown }
/**
* Axesorigin
* @description Structured information on a quantitative value.
*/
- axesOrigin: components["schemas"]["AxesOrigin"][];
+ axesOrigin: components["schemas"]["AxesOrigin"][]
/**
* defaultImage
* @description Two or three dimensional image that particluarly represents a specific coordinate space.
*/
- defaultImage?: unknown[];
+ defaultImage?: unknown[]
/**
* digitalIdentifier
* @description Digital handle to identify objects or legal persons.
*/
- digitalIdentifier?: { [key: string]: unknown };
+ digitalIdentifier?: { [key: string]: unknown }
/**
* fullName
* @description Whole, non-abbreviated name of something or somebody.
*/
- fullName: string;
+ fullName: string
/**
* homepage
* @description Main website of something or someone.
*/
- homepage?: { [key: string]: unknown };
+ homepage?: { [key: string]: unknown }
/**
* howToCite
* @description Preferred format for citing a particular object or legal person.
*/
- howToCite?: string;
+ howToCite?: string
/**
* nativeUnit
* @description Determinate quantity used in the original measurement.
*/
- nativeUnit: { [key: string]: unknown };
+ nativeUnit: { [key: string]: unknown }
/**
* ontologyIdentifier
* @description Term or code used to identify something or someone registered within a particular ontology.
*/
- ontologyIdentifier?: string[];
+ ontologyIdentifier?: string[]
/**
* releaseDate
* Format: date
* @description Fixed date on which a product is due to become or was made available for the general public to see or buy
*/
- releaseDate: string;
+ releaseDate: string
/**
* shortName
* @description Shortened or fully abbreviated name of something or somebody.
*/
- shortName: string;
+ shortName: string
/**
* versionIdentifier
* @description Term or code used to identify the version of something.
*/
- versionIdentifier: string;
- };
+ versionIdentifier: string
+ }
/** SerializationErrorModel */
SerializationErrorModel: {
/**
* Type
* @constant
*/
- type?: "spy/serialization-error";
+ type?: "spy/serialization-error"
/** Message */
- message: string;
- };
+ message: string
+ }
/** SiibraAtIdModel */
SiibraAtIdModel: {
/** @Id */
- "@id": string;
- };
+ "@id": string
+ }
/** SiibraParcellationVersionModel */
SiibraParcellationVersionModel: {
/** Name */
- name: string;
+ name: string
/** Deprecated */
- deprecated?: boolean;
- prev?: components["schemas"]["SiibraAtIdModel"];
- next?: components["schemas"]["SiibraAtIdModel"];
- };
+ deprecated?: boolean
+ prev?: components["schemas"]["SiibraAtIdModel"]
+ next?: components["schemas"]["SiibraAtIdModel"]
+ }
/** SpeciesModel */
SpeciesModel: {
/**
* @Context
* @default [object Object]
*/
- "@context"?: components["schemas"]["VocabModel"];
+ "@context"?: components["schemas"]["VocabModel"]
/**
* @Id
* @description Metadata node identifier.
*/
- "@id": string;
+ "@id": string
/** @Type */
- "@type": string;
+ "@type": string
/**
* definition
* @description Short, but precise statement of the meaning of a word, word group, sign or a symbol.
*/
- definition?: string;
+ definition?: string
/**
* description
* @description Longer statement or account giving the characteristics of someone or something.
*/
- description?: string;
+ description?: string
/**
* interlexIdentifier
* @description Persistent identifier for a term registered in the InterLex project.
*/
- interlexIdentifier?: string;
+ interlexIdentifier?: string
/**
* knowledgeSpaceLink
* @description Persistent link to an encyclopedia entry in the Knowledge Space project.
*/
- knowledgeSpaceLink?: string;
+ knowledgeSpaceLink?: string
/**
* name
* @description Word or phrase that constitutes the distinctive designation of a being or thing.
*/
- name: string;
+ name: string
/**
* preferredOntologyIdentifier
* @description Persistent identifier of a preferred ontological term.
*/
- preferredOntologyIdentifier?: string;
+ preferredOntologyIdentifier?: string
/**
* synonym
* @description Words or expressions used in the same language that have the same or nearly the same meaning in some or all senses.
*/
- synonym?: string[];
+ synonym?: string[]
/** Kgv1Id */
- kgV1Id: string;
- };
+ kgV1Id: string
+ }
/** SymbolMarkupClass */
SymbolMarkupClass: {
- receptor: components["schemas"]["ReceptorMarkupModel"];
- neurotransmitter: components["schemas"]["NeurotransmitterMarkupModel"];
- };
+ receptor: components["schemas"]["ReceptorMarkupModel"]
+ neurotransmitter: components["schemas"]["NeurotransmitterMarkupModel"]
+ }
/** Url */
Url: {
/** Doi */
- doi: string;
+ doi: string
/** Cite */
- cite?: string;
- };
+ cite?: string
+ }
/** VOIDataModel */
VOIDataModel: {
/** @Id */
- "@id": string;
+ "@id": string
/**
* Type
* @constant
*/
- type?: "siibra/features/voi";
- metadata: components["schemas"]["siibra__openminds__core__v4__products__datasetVersion__Model"];
+ type?: "siibra/features/voi"
+ metadata: components["schemas"]["siibra__openminds__core__v4__products__datasetVersion__Model"]
/** Urls */
- urls: components["schemas"]["Url"][];
+ urls: components["schemas"]["Url"][]
/** Volumes */
- volumes: components["schemas"]["VolumeModel"][];
- location: components["schemas"]["BoundingBoxModel"];
- };
+ volumes: components["schemas"]["VolumeModel"][]
+ location: components["schemas"]["BoundingBoxModel"]
+ }
/** ValidationError */
ValidationError: {
/** Location */
- loc: string[];
+ loc: string[]
/** Message */
- msg: string;
+ msg: string
/** Error Type */
- type: string;
- };
+ type: string
+ }
/** VocabModel */
VocabModel: {
/** @Vocab */
- "@vocab": string;
- };
+ "@vocab": string
+ }
/** VolumeDataModel */
VolumeDataModel: {
/** Type */
- type: string;
+ type: string
/** Is Volume */
- is_volume: boolean;
+ is_volume: boolean
/** Is Surface */
- is_surface: boolean;
+ is_surface: boolean
/** Detail */
- detail: { [key: string]: unknown };
- space: components["schemas"]["SiibraAtIdModel"];
+ detail: { [key: string]: unknown }
+ space: components["schemas"]["SiibraAtIdModel"]
/** Url */
- url?: string;
+ url?: string
/** Url Map */
- url_map?: { [key: string]: string };
+ url_map?: { [key: string]: string }
/** Map Type */
- map_type?: string;
+ map_type?: string
/** Volume Type */
- volume_type?: string;
- };
+ volume_type?: string
+ }
/** VolumeModel */
VolumeModel: {
/** @Id */
- "@id": string;
+ "@id": string
/**
* Type
* @constant
*/
- type?: "siibra/core/dataset";
- metadata: components["schemas"]["siibra__openminds__core__v4__products__datasetVersion__Model"];
+ type?: "siibra/core/dataset"
+ metadata: components["schemas"]["siibra__openminds__core__v4__products__datasetVersion__Model"]
/** Urls */
- urls: components["schemas"]["Url"][];
- data: components["schemas"]["VolumeDataModel"];
- };
+ urls: components["schemas"]["Url"][]
+ data: components["schemas"]["VolumeDataModel"]
+ }
/** Copyright */
siibra__openminds__SANDS__v3__atlas__brainAtlasVersion__Copyright: {
/**
* @Context
* @default [object Object]
*/
- "@context"?: components["schemas"]["VocabModel"];
+ "@context"?: components["schemas"]["VocabModel"]
/**
* holder
* @description Legal person in possession of something.
*/
- holder: unknown[];
+ holder: unknown[]
/**
* year
* @description Cycle in the Gregorian calendar specified by a number and comprised of 365 or 366 days divided into 12 months beginning with January and ending with December.
*/
- year: string;
- };
+ year: string
+ }
/** Model */
siibra__openminds__SANDS__v3__atlas__brainAtlasVersion__Model: {
/**
* @Context
* @default [object Object]
*/
- "@context"?: components["schemas"]["VocabModel"];
+ "@context"?: components["schemas"]["VocabModel"]
/**
* @Id
* @description Metadata node identifier.
*/
- "@id": string;
+ "@id": string
/** @Type */
- "@type": string;
+ "@type": string
/** abbreviation */
- abbreviation?: string;
+ abbreviation?: string
/**
* accessibility
* @description Level to which something is accessible to someone or something.
*/
- accessibility: { [key: string]: unknown };
+ accessibility: { [key: string]: unknown }
/** atlasType */
- atlasType?: { [key: string]: unknown };
+ atlasType?: { [key: string]: unknown }
/**
* author
* @description Creator of a literary or creative work, as well as a dataset publication.
*/
- author?: unknown[];
+ author?: unknown[]
/**
* coordinateSpace
* @description Two or three dimensional geometric setting.
*/
- coordinateSpace: { [key: string]: unknown };
+ coordinateSpace: { [key: string]: unknown }
/**
* Copyright
* @description Structured information on the copyright.
*/
- copyright?: components["schemas"]["siibra__openminds__SANDS__v3__atlas__brainAtlasVersion__Copyright"];
+ copyright?: components["schemas"]["siibra__openminds__SANDS__v3__atlas__brainAtlasVersion__Copyright"]
/**
* custodian
* @description The 'custodian' is a legal person who is responsible for the content and quality of the data, metadata, and/or code of a research product.
*/
- custodian?: unknown[];
+ custodian?: unknown[]
/**
* description
* @description Longer statement or account giving the characteristics of someone or something.
*/
- description?: string;
+ description?: string
/**
* digitalIdentifier
* @description Digital handle to identify objects or legal persons.
*/
- digitalIdentifier?: { [key: string]: unknown };
+ digitalIdentifier?: { [key: string]: unknown }
/**
* fullDocumentation
* @description Non-abridged instructions, comments, and information for using a particular product.
*/
- fullDocumentation: { [key: string]: unknown };
+ fullDocumentation: { [key: string]: unknown }
/**
* fullName
* @description Whole, non-abbreviated name of something or somebody.
*/
- fullName?: string;
+ fullName?: string
/**
* funding
* @description Money provided by a legal person for a particular purpose.
*/
- funding?: unknown[];
- hasTerminologyVersion: components["schemas"]["HasTerminologyVersion"];
+ funding?: unknown[]
+ hasTerminologyVersion: components["schemas"]["HasTerminologyVersion"]
/**
* homepage
* @description Main website of something or someone.
*/
- homepage?: { [key: string]: unknown };
+ homepage?: { [key: string]: unknown }
/**
* howToCite
* @description Preferred format for citing a particular object or legal person.
*/
- howToCite?: string;
+ howToCite?: string
/**
* isAlternativeVersionOf
* @description Reference to an original form where the essence was preserved, but presented in an alternative form.
*/
- isAlternativeVersionOf?: unknown[];
+ isAlternativeVersionOf?: unknown[]
/**
* isNewVersionOf
* @description Reference to a previous (potentially outdated) particular form of something.
*/
- isNewVersionOf?: { [key: string]: unknown };
+ isNewVersionOf?: { [key: string]: unknown }
/**
* keyword
* @description Significant word or concept that are representative of something or someone.
*/
- keyword?: unknown[];
+ keyword?: unknown[]
/**
* license
* @description Grant by a party to another party as an element of an agreement between those parties that permits to do, use, or own something.
*/
- license: { [key: string]: unknown };
+ license: { [key: string]: unknown }
/**
* ontologyIdentifier
* @description Term or code used to identify something or someone registered within a particular ontology.
*/
- ontologyIdentifier?: string[];
+ ontologyIdentifier?: string[]
/**
* Othercontribution
* @description Structured information on the contribution made to a research product.
*/
- otherContribution?: components["schemas"]["siibra__openminds__SANDS__v3__atlas__brainAtlasVersion__OtherContribution"];
+ otherContribution?: components["schemas"]["siibra__openminds__SANDS__v3__atlas__brainAtlasVersion__OtherContribution"]
/**
* relatedPublication
* @description Reference to something that was made available for the general public to see or buy.
*/
- relatedPublication?: unknown[];
+ relatedPublication?: unknown[]
/**
* releaseDate
* Format: date
* @description Fixed date on which a product is due to become or was made available for the general public to see or buy
*/
- releaseDate: string;
+ releaseDate: string
/**
* repository
* @description Place, room, or container where something is deposited or stored.
*/
- repository?: { [key: string]: unknown };
+ repository?: { [key: string]: unknown }
/**
* shortName
* @description Shortened or fully abbreviated name of something or somebody.
*/
- shortName: string;
+ shortName: string
/**
* supportChannel
* @description Way of communication used to interact with users or customers.
*/
- supportChannel?: string[];
+ supportChannel?: string[]
/**
* versionIdentifier
* @description Term or code used to identify the version of something.
*/
- versionIdentifier: string;
+ versionIdentifier: string
/**
* versionInnovation
* @description Documentation on what changed in comparison to a previously published form of something.
*/
- versionInnovation: string;
- };
+ versionInnovation: string
+ }
/** OtherContribution */
siibra__openminds__SANDS__v3__atlas__brainAtlasVersion__OtherContribution: {
/**
* @Context
* @default [object Object]
*/
- "@context"?: components["schemas"]["VocabModel"];
+ "@context"?: components["schemas"]["VocabModel"]
/**
* contributionType
* @description Distinct class of what was given or supplied as a part or share.
*/
- contributionType: unknown[];
+ contributionType: unknown[]
/**
* contributor
* @description Legal person that gave or supplied something as a part or share.
*/
- contributor: unknown;
- };
+ contributor: unknown
+ }
/** Coordinates */
siibra__openminds__SANDS__v3__atlas__parcellationEntityVersion__Coordinates: {
/**
* @Context
* @default [object Object]
*/
- "@context"?: components["schemas"]["VocabModel"];
+ "@context"?: components["schemas"]["VocabModel"]
/**
* typeOfUncertainty
* @description Distinct technique used to quantify the uncertainty of a measurement.
*/
- typeOfUncertainty?: unknown;
+ typeOfUncertainty?: unknown
/**
* uncertainty
* @description Quantitative value range defining the uncertainty of a measurement.
*/
- uncertainty?: number[];
+ uncertainty?: number[]
/**
* unit
* @description Determinate quantity adopted as a standard of measurement.
*/
- unit?: unknown;
+ unit?: unknown
/**
* value
* @description Entry for a property.
*/
- value: number;
- };
+ value: number
+ }
/** Model */
siibra__openminds__SANDS__v3__atlas__parcellationEntityVersion__Model: {
/**
* @Context
* @default [object Object]
*/
- "@context"?: components["schemas"]["VocabModel"];
+ "@context"?: components["schemas"]["VocabModel"]
/**
* @Id
* @description Metadata node identifier.
*/
- "@id": string;
+ "@id": string
/** @Type */
- "@type": string;
- hasAnnotation?: components["schemas"]["HasAnnotation"];
+ "@type": string
+ hasAnnotation?: components["schemas"]["HasAnnotation"]
/**
* hasParent
* @description Reference to a parent object or legal person.
*/
- hasParent?: unknown[];
+ hasParent?: unknown[]
/** lookupLabel */
- lookupLabel?: string;
+ lookupLabel?: string
/**
* name
* @description Word or phrase that constitutes the distinctive designation of a being or thing.
*/
- name?: string;
+ name?: string
/**
* ontologyIdentifier
* @description Term or code used to identify something or someone registered within a particular ontology.
*/
- ontologyIdentifier?: string[];
+ ontologyIdentifier?: string[]
/** Relationassessment */
relationAssessment?: Partial<
components["schemas"]["RelationAssessmentItem"]
> &
- Partial<components["schemas"]["RelationAssessmentItem1"]>;
+ Partial<components["schemas"]["RelationAssessmentItem1"]>
/**
* versionIdentifier
* @description Term or code used to identify the version of something.
*/
- versionIdentifier: string;
+ versionIdentifier: string
/**
* versionInnovation
* @description Documentation on what changed in comparison to a previously published form of something.
*/
- versionInnovation?: string;
- };
+ versionInnovation?: string
+ }
/** Coordinates */
siibra__openminds__SANDS__v3__miscellaneous__coordinatePoint__Coordinates: {
/**
* @Context
* @default [object Object]
*/
- "@context"?: components["schemas"]["VocabModel"];
+ "@context"?: components["schemas"]["VocabModel"]
/**
* typeOfUncertainty
* @description Distinct technique used to quantify the uncertainty of a measurement.
*/
- typeOfUncertainty?: unknown;
+ typeOfUncertainty?: unknown
/**
* uncertainty
* @description Quantitative value range defining the uncertainty of a measurement.
*/
- uncertainty?: number[];
+ uncertainty?: number[]
/**
* unit
* @description Determinate quantity adopted as a standard of measurement.
*/
- unit?: unknown;
+ unit?: unknown
/**
* value
* @description Entry for a property.
*/
- value: number;
- };
+ value: number
+ }
/** Model */
siibra__openminds__SANDS__v3__miscellaneous__coordinatePoint__Model: {
/**
* @Context
* @default [object Object]
*/
- "@context"?: components["schemas"]["VocabModel"];
+ "@context"?: components["schemas"]["VocabModel"]
/**
* @Id
* @description Metadata node identifier.
*/
- "@id": string;
+ "@id": string
/** @Type */
- "@type": string;
+ "@type": string
/**
* coordinateSpace
* @description Two or three dimensional geometric setting.
*/
- coordinateSpace: { [key: string]: unknown };
+ coordinateSpace: { [key: string]: unknown }
/**
* Coordinates
* @description Structured information on a quantitative value.
*/
- coordinates: components["schemas"]["siibra__openminds__SANDS__v3__miscellaneous__coordinatePoint__Coordinates"][];
- };
+ coordinates: components["schemas"]["siibra__openminds__SANDS__v3__miscellaneous__coordinatePoint__Coordinates"][]
+ }
/** Copyright */
siibra__openminds__core__v4__products__datasetVersion__Copyright: {
/**
* @Context
* @default [object Object]
*/
- "@context"?: components["schemas"]["VocabModel"];
+ "@context"?: components["schemas"]["VocabModel"]
/**
* holder
* @description Legal person in possession of something.
*/
- holder: unknown[];
+ holder: unknown[]
/**
* year
* @description Cycle in the Gregorian calendar specified by a number and comprised of 365 or 366 days divided into 12 months beginning with January and ending with December.
*/
- year: string;
- };
+ year: string
+ }
/** Model */
siibra__openminds__core__v4__products__datasetVersion__Model: {
/**
* @Context
* @default [object Object]
*/
- "@context"?: components["schemas"]["VocabModel"];
+ "@context"?: components["schemas"]["VocabModel"]
/**
* @Id
* @description Metadata node identifier.
*/
- "@id": string;
+ "@id": string
/** @Type */
- "@type": string;
+ "@type": string
/**
* accessibility
* @description Level to which something is accessible to someone or something.
*/
- accessibility: { [key: string]: unknown };
+ accessibility: { [key: string]: unknown }
/**
* author
* @description Creator of a literary or creative work, as well as a dataset publication.
*/
- author?: unknown[];
+ author?: unknown[]
/** behavioralProtocol */
- behavioralProtocol?: unknown[];
+ behavioralProtocol?: unknown[]
/**
* Copyright
* @description Structured information on the copyright.
*/
- copyright?: components["schemas"]["siibra__openminds__core__v4__products__datasetVersion__Copyright"];
+ copyright?: components["schemas"]["siibra__openminds__core__v4__products__datasetVersion__Copyright"]
/**
* custodian
* @description The 'custodian' is a legal person who is responsible for the content and quality of the data, metadata, and/or code of a research product.
*/
- custodian?: unknown[];
+ custodian?: unknown[]
/** dataType */
- dataType: unknown[];
+ dataType: unknown[]
/**
* description
* @description Longer statement or account giving the characteristics of someone or something.
*/
- description?: string;
+ description?: string
/**
* digitalIdentifier
* @description Digital handle to identify objects or legal persons.
*/
- digitalIdentifier: { [key: string]: unknown };
+ digitalIdentifier: { [key: string]: unknown }
/**
* ethicsAssessment
* @description Judgment about the applied principles of conduct governing an individual or a group.
*/
- ethicsAssessment: { [key: string]: unknown };
+ ethicsAssessment: { [key: string]: unknown }
/** experimentalApproach */
- experimentalApproach: unknown[];
+ experimentalApproach: unknown[]
/**
* fullDocumentation
* @description Non-abridged instructions, comments, and information for using a particular product.
*/
- fullDocumentation: { [key: string]: unknown };
+ fullDocumentation: { [key: string]: unknown }
/**
* fullName
* @description Whole, non-abbreviated name of something or somebody.
*/
- fullName?: string;
+ fullName?: string
/**
* funding
* @description Money provided by a legal person for a particular purpose.
*/
- funding?: unknown[];
+ funding?: unknown[]
/**
* homepage
* @description Main website of something or someone.
*/
- homepage?: { [key: string]: unknown };
+ homepage?: { [key: string]: unknown }
/**
* howToCite
* @description Preferred format for citing a particular object or legal person.
*/
- howToCite?: string;
+ howToCite?: string
/**
* inputData
* @description Data that is put into a process or machine.
*/
- inputData?: unknown[];
+ inputData?: unknown[]
/**
* isAlternativeVersionOf
* @description Reference to an original form where the essence was preserved, but presented in an alternative form.
*/
- isAlternativeVersionOf?: unknown[];
+ isAlternativeVersionOf?: unknown[]
/**
* isNewVersionOf
* @description Reference to a previous (potentially outdated) particular form of something.
*/
- isNewVersionOf?: { [key: string]: unknown };
+ isNewVersionOf?: { [key: string]: unknown }
/**
* keyword
* @description Significant word or concept that are representative of something or someone.
*/
- keyword?: unknown[];
+ keyword?: unknown[]
/**
* license
* @description Grant by a party to another party as an element of an agreement between those parties that permits to do, use, or own something.
*/
- license: { [key: string]: unknown };
+ license: { [key: string]: unknown }
/**
* Othercontribution
* @description Structured information on the contribution made to a research product.
*/
- otherContribution?: components["schemas"]["siibra__openminds__core__v4__products__datasetVersion__OtherContribution"];
+ otherContribution?: components["schemas"]["siibra__openminds__core__v4__products__datasetVersion__OtherContribution"]
/** preparationDesign */
- preparationDesign?: unknown[];
+ preparationDesign?: unknown[]
/**
* relatedPublication
* @description Reference to something that was made available for the general public to see or buy.
*/
- relatedPublication?: unknown[];
+ relatedPublication?: unknown[]
/**
* releaseDate
* Format: date
* @description Fixed date on which a product is due to become or was made available for the general public to see or buy
*/
- releaseDate: string;
+ releaseDate: string
/**
* repository
* @description Place, room, or container where something is deposited or stored.
*/
- repository?: { [key: string]: unknown };
+ repository?: { [key: string]: unknown }
/**
* shortName
* @description Shortened or fully abbreviated name of something or somebody.
*/
- shortName: string;
+ shortName: string
/** studiedSpecimen */
- studiedSpecimen?: unknown[];
+ studiedSpecimen?: unknown[]
/**
* studyTarget
* @description Structure or function that was targeted within a study.
*/
- studyTarget?: unknown[];
+ studyTarget?: unknown[]
/**
* supportChannel
* @description Way of communication used to interact with users or customers.
*/
- supportChannel?: string[];
+ supportChannel?: string[]
/**
* technique
* @description Method of accomplishing a desired aim.
*/
- technique: unknown[];
+ technique: unknown[]
/**
* versionIdentifier
* @description Term or code used to identify the version of something.
*/
- versionIdentifier: string;
+ versionIdentifier: string
/**
* versionInnovation
* @description Documentation on what changed in comparison to a previously published form of something.
*/
- versionInnovation: string;
- };
+ versionInnovation: string
+ }
/** OtherContribution */
siibra__openminds__core__v4__products__datasetVersion__OtherContribution: {
/**
* @Context
* @default [object Object]
*/
- "@context"?: components["schemas"]["VocabModel"];
+ "@context"?: components["schemas"]["VocabModel"]
/**
* contributionType
* @description Distinct class of what was given or supplied as a part or share.
*/
- contributionType: unknown[];
+ contributionType: unknown[]
/**
* contributor
* @description Legal person that gave or supplied something as a part or share.
*/
- contributor: unknown;
- };
- };
+ contributor: unknown
+ }
+ }
}
export interface operations {
@@ -1309,41 +1309,41 @@ export interface operations {
get_all_regions_from_atlas_parc_space_atlases__atlas_id__parcellations__parcellation_id__regions_get: {
parameters: {
path: {
- atlas_id: string;
- parcellation_id: string;
- };
+ atlas_id: string
+ parcellation_id: string
+ }
query: {
- space_id?: string;
- find?: string;
- };
- };
+ space_id?: string
+ find?: string
+ }
+ }
responses: {
/** Successful Response */
200: {
content: {
- "application/json": components["schemas"]["siibra__openminds__SANDS__v3__atlas__parcellationEntityVersion__Model"][];
- };
- };
+ "application/json": components["schemas"]["siibra__openminds__SANDS__v3__atlas__parcellationEntityVersion__Model"][]
+ }
+ }
/** Validation Error */
422: {
content: {
- "application/json": components["schemas"]["HTTPValidationError"];
- };
- };
- };
- };
+ "application/json": components["schemas"]["HTTPValidationError"]
+ }
+ }
+ }
+ }
/** Returns all regional features for a region. */
get_all_features_for_region_atlases__atlas_id__parcellations__parcellation_id__regions__region_id__features_get: {
parameters: {
path: {
- atlas_id: string;
- parcellation_id: string;
- region_id: string;
- };
+ atlas_id: string
+ parcellation_id: string
+ region_id: string
+ }
query: {
- space_id?: string;
- };
- };
+ space_id?: string
+ }
+ }
responses: {
/** Successful Response */
200: {
@@ -1351,31 +1351,31 @@ export interface operations {
"application/json": (Partial<
components["schemas"]["ReceptorDatasetModel"]
> &
- Partial<components["schemas"]["BaseDatasetJsonModel"]>)[];
- };
- };
+ Partial<components["schemas"]["BaseDatasetJsonModel"]>)[]
+ }
+ }
/** Validation Error */
422: {
content: {
- "application/json": components["schemas"]["HTTPValidationError"];
- };
- };
- };
- };
+ "application/json": components["schemas"]["HTTPValidationError"]
+ }
+ }
+ }
+ }
/** Returns a feature for a region, as defined by by the modality and feature ID */
get_regional_modality_by_id_atlases__atlas_id__parcellations__parcellation_id__regions__region_id__features__feature_id__get: {
parameters: {
path: {
- atlas_id: string;
- parcellation_id: string;
- region_id: string;
- feature_id: string;
- };
+ atlas_id: string
+ parcellation_id: string
+ region_id: string
+ feature_id: string
+ }
query: {
- space_id?: string;
- gene?: string;
- };
- };
+ space_id?: string
+ gene?: string
+ }
+ }
responses: {
/** Successful Response */
200: {
@@ -1383,129 +1383,129 @@ export interface operations {
"application/json": Partial<
components["schemas"]["ReceptorDatasetModel"]
> &
- Partial<components["schemas"]["BaseDatasetJsonModel"]>;
- };
- };
+ Partial<components["schemas"]["BaseDatasetJsonModel"]>
+ }
+ }
/** Validation Error */
422: {
content: {
- "application/json": components["schemas"]["HTTPValidationError"];
- };
- };
- };
- };
+ "application/json": components["schemas"]["HTTPValidationError"]
+ }
+ }
+ }
+ }
/** Returns information about a regional map for given region name. */
get_regional_map_info_atlases__atlas_id__parcellations__parcellation_id__regions__region_id__regional_map_info_get: {
parameters: {
path: {
- atlas_id: string;
- parcellation_id: string;
- region_id: string;
- };
+ atlas_id: string
+ parcellation_id: string
+ region_id: string
+ }
query: {
- space_id?: string;
- };
- };
+ space_id?: string
+ }
+ }
responses: {
/** Successful Response */
200: {
content: {
- "application/json": components["schemas"]["NiiMetadataModel"];
- };
- };
+ "application/json": components["schemas"]["NiiMetadataModel"]
+ }
+ }
/** Validation Error */
422: {
content: {
- "application/json": components["schemas"]["HTTPValidationError"];
- };
- };
- };
- };
+ "application/json": components["schemas"]["HTTPValidationError"]
+ }
+ }
+ }
+ }
/** Returns a regional map for given region name. */
get_regional_map_file_atlases__atlas_id__parcellations__parcellation_id__regions__region_id__regional_map_map_get: {
parameters: {
path: {
- atlas_id: string;
- parcellation_id: string;
- region_id: string;
- };
+ atlas_id: string
+ parcellation_id: string
+ region_id: string
+ }
query: {
- space_id?: string;
- };
- };
+ space_id?: string
+ }
+ }
responses: {
/** Successful Response */
200: {
content: {
- "application/json": unknown;
- "application/octet-stream": string;
- };
- };
+ "application/json": unknown
+ "application/octet-stream": string
+ }
+ }
/** Validation Error */
422: {
content: {
- "application/json": components["schemas"]["HTTPValidationError"];
- };
- };
- };
- };
+ "application/json": components["schemas"]["HTTPValidationError"]
+ }
+ }
+ }
+ }
get_single_region_detail_atlases__atlas_id__parcellations__parcellation_id__regions__region_id__get: {
parameters: {
path: {
- atlas_id: string;
- parcellation_id: string;
- region_id: string;
- };
+ atlas_id: string
+ parcellation_id: string
+ region_id: string
+ }
query: {
- space_id?: string;
- };
- };
+ space_id?: string
+ }
+ }
responses: {
/** Successful Response */
200: {
content: {
- "application/json": components["schemas"]["siibra__openminds__SANDS__v3__atlas__parcellationEntityVersion__Model"];
- };
- };
+ "application/json": components["schemas"]["siibra__openminds__SANDS__v3__atlas__parcellationEntityVersion__Model"]
+ }
+ }
/** Validation Error */
422: {
content: {
- "application/json": components["schemas"]["HTTPValidationError"];
- };
- };
- };
- };
+ "application/json": components["schemas"]["HTTPValidationError"]
+ }
+ }
+ }
+ }
/** Returns all parcellations that are defined in the siibra client for given atlas. */
get_all_parcellations_atlases__atlas_id__parcellations_get: {
parameters: {
path: {
- atlas_id: string;
- };
- };
+ atlas_id: string
+ }
+ }
responses: {
/** Successful Response */
200: {
content: {
- "application/json": components["schemas"]["SapiParcellationModel"][];
- };
- };
+ "application/json": components["schemas"]["SapiParcellationModel"][]
+ }
+ }
/** Validation Error */
422: {
content: {
- "application/json": components["schemas"]["HTTPValidationError"];
- };
- };
- };
- };
+ "application/json": components["schemas"]["HTTPValidationError"]
+ }
+ }
+ }
+ }
/** Returns a global feature for a specific modality id. */
get_single_global_feature_detail_atlases__atlas_id__parcellations__parcellation_id__features__feature_id__get: {
parameters: {
path: {
- atlas_id: string;
- parcellation_id: string;
- feature_id: string;
- };
- };
+ atlas_id: string
+ parcellation_id: string
+ feature_id: string
+ }
+ }
responses: {
/** Successful Response */
200: {
@@ -1513,29 +1513,29 @@ export interface operations {
"application/json": Partial<
components["schemas"]["ConnectivityMatrixDataModel"]
> &
- Partial<components["schemas"]["SerializationErrorModel"]>;
- };
- };
+ Partial<components["schemas"]["SerializationErrorModel"]>
+ }
+ }
/** Validation Error */
422: {
content: {
- "application/json": components["schemas"]["HTTPValidationError"];
- };
- };
- };
- };
+ "application/json": components["schemas"]["HTTPValidationError"]
+ }
+ }
+ }
+ }
/** Returns all global features for a parcellation. */
get_global_features_names_atlases__atlas_id__parcellations__parcellation_id__features_get: {
parameters: {
path: {
- atlas_id: string;
- parcellation_id: string;
- };
+ atlas_id: string
+ parcellation_id: string
+ }
query: {
- per_page?: number;
- page?: number;
- };
- };
+ per_page?: number
+ page?: number
+ }
+ }
responses: {
/** Successful Response */
200: {
@@ -1543,133 +1543,133 @@ export interface operations {
"application/json": (Partial<
components["schemas"]["ConnectivityMatrixDataModel"]
> &
- Partial<components["schemas"]["SerializationErrorModel"]>)[];
- };
- };
+ Partial<components["schemas"]["SerializationErrorModel"]>)[]
+ }
+ }
/** Validation Error */
422: {
content: {
- "application/json": components["schemas"]["HTTPValidationError"];
- };
- };
- };
- };
+ "application/json": components["schemas"]["HTTPValidationError"]
+ }
+ }
+ }
+ }
/** Returns one parcellation for given id. */
get_volumes_by_id_atlases__atlas_id__parcellations__parcellation_id__volumes_get: {
parameters: {
path: {
- atlas_id: string;
- parcellation_id: string;
- };
- };
+ atlas_id: string
+ parcellation_id: string
+ }
+ }
responses: {
/** Successful Response */
200: {
content: {
- "application/json": components["schemas"]["VolumeModel"][];
- };
- };
+ "application/json": components["schemas"]["VolumeModel"][]
+ }
+ }
/** Validation Error */
422: {
content: {
- "application/json": components["schemas"]["HTTPValidationError"];
- };
- };
- };
- };
+ "application/json": components["schemas"]["HTTPValidationError"]
+ }
+ }
+ }
+ }
/** Returns one parcellation for given id. */
get_parcellation_by_id_atlases__atlas_id__parcellations__parcellation_id__get: {
parameters: {
path: {
- atlas_id: string;
- parcellation_id: string;
- };
- };
+ atlas_id: string
+ parcellation_id: string
+ }
+ }
responses: {
/** Successful Response */
200: {
content: {
- "application/json": components["schemas"]["SapiParcellationModel"];
- };
- };
+ "application/json": components["schemas"]["SapiParcellationModel"]
+ }
+ }
/** Validation Error */
422: {
content: {
- "application/json": components["schemas"]["HTTPValidationError"];
- };
- };
- };
- };
+ "application/json": components["schemas"]["HTTPValidationError"]
+ }
+ }
+ }
+ }
/** Returns all spaces that are defined in the siibra client. */
get_all_spaces_atlases__atlas_id__spaces_get: {
parameters: {
path: {
- atlas_id: string;
- };
- };
+ atlas_id: string
+ }
+ }
responses: {
/** Successful Response */
200: {
content: {
- "application/json": components["schemas"]["SapiSpaceModel"][];
- };
- };
+ "application/json": components["schemas"]["SapiSpaceModel"][]
+ }
+ }
/** Validation Error */
422: {
content: {
- "application/json": components["schemas"]["HTTPValidationError"];
- };
- };
- };
- };
+ "application/json": components["schemas"]["HTTPValidationError"]
+ }
+ }
+ }
+ }
/** Returns a template for a given space id. */
get_template_by_space_id_atlases__atlas_id__spaces__space_id__templates_get: {
parameters: {
path: {
- atlas_id: string;
- space_id: string;
- };
- };
+ atlas_id: string
+ space_id: string
+ }
+ }
responses: {
/** Successful Response */
200: {
content: {
- "application/json": unknown;
- "application/octet-stream": string;
- };
- };
+ "application/json": unknown
+ "application/octet-stream": string
+ }
+ }
/** Validation Error */
422: {
content: {
- "application/json": components["schemas"]["HTTPValidationError"];
- };
- };
- };
- };
+ "application/json": components["schemas"]["HTTPValidationError"]
+ }
+ }
+ }
+ }
/** Returns all parcellation maps for a given space id. */
get_parcellation_map_for_space_atlases__atlas_id__spaces__space_id__parcellation_maps_get: {
parameters: {
path: {
- atlas_id: string;
- space_id: string;
- };
- };
+ atlas_id: string
+ space_id: string
+ }
+ }
responses: {
/** Successful Response */
200: {
content: {
- "application/json": unknown;
- "application/octet-stream": string;
- };
- };
+ "application/json": unknown
+ "application/octet-stream": string
+ }
+ }
/** Validation Error */
422: {
content: {
- "application/json": components["schemas"]["HTTPValidationError"];
- };
- };
- };
- };
+ "application/json": components["schemas"]["HTTPValidationError"]
+ }
+ }
+ }
+ }
/**
* Get a detailed view on a single spatial feature.
* A parcellation id and region id can be provided optional to get more details.
@@ -1677,16 +1677,16 @@ export interface operations {
get_single_spatial_feature_detail_atlases__atlas_id__spaces__space_id__features__feature_id__get: {
parameters: {
path: {
- feature_id: string;
- atlas_id: string;
- space_id: string;
- };
+ feature_id: string
+ atlas_id: string
+ space_id: string
+ }
query: {
- parcellation_id: string;
- region: string;
- bbox?: string;
- };
- };
+ parcellation_id: string
+ region: string
+ bbox?: string
+ }
+ }
responses: {
/** Successful Response */
200: {
@@ -1694,30 +1694,30 @@ export interface operations {
"application/json": Partial<
components["schemas"]["IEEGSessionModel"]
> &
- Partial<components["schemas"]["VOIDataModel"]>;
- };
- };
+ Partial<components["schemas"]["VOIDataModel"]>
+ }
+ }
/** Validation Error */
422: {
content: {
- "application/json": components["schemas"]["HTTPValidationError"];
- };
- };
- };
- };
+ "application/json": components["schemas"]["HTTPValidationError"]
+ }
+ }
+ }
+ }
/** Return all possible feature names and links to get more details */
get_spatial_features_from_space_atlases__atlas_id__spaces__space_id__features_get: {
parameters: {
path: {
- atlas_id: string;
- space_id: string;
- };
+ atlas_id: string
+ space_id: string
+ }
query: {
- parcellation_id?: string;
- region?: string;
- bbox?: string;
- };
- };
+ parcellation_id?: string
+ region?: string
+ bbox?: string
+ }
+ }
responses: {
/** Successful Response */
200: {
@@ -1725,117 +1725,117 @@ export interface operations {
"application/json": (Partial<
components["schemas"]["IEEGSessionModel"]
> &
- Partial<components["schemas"]["VOIDataModel"]>)[];
- };
- };
+ Partial<components["schemas"]["VOIDataModel"]>)[]
+ }
+ }
/** Validation Error */
422: {
content: {
- "application/json": components["schemas"]["HTTPValidationError"];
- };
- };
- };
- };
+ "application/json": components["schemas"]["HTTPValidationError"]
+ }
+ }
+ }
+ }
get_one_space_volumes_atlases__atlas_id__spaces__space_id__volumes_get: {
parameters: {
path: {
- atlas_id: string;
- space_id: string;
- };
- };
+ atlas_id: string
+ space_id: string
+ }
+ }
responses: {
/** Successful Response */
200: {
content: {
- "application/json": components["schemas"]["VolumeModel"][];
- };
- };
+ "application/json": components["schemas"]["VolumeModel"][]
+ }
+ }
/** Validation Error */
422: {
content: {
- "application/json": components["schemas"]["HTTPValidationError"];
- };
- };
- };
- };
+ "application/json": components["schemas"]["HTTPValidationError"]
+ }
+ }
+ }
+ }
/** Returns one space for given id, with links to further resources */
get_one_space_by_id_atlases__atlas_id__spaces__space_id__get: {
parameters: {
path: {
- atlas_id: string;
- space_id: string;
- };
- };
+ atlas_id: string
+ space_id: string
+ }
+ }
responses: {
/** Successful Response */
200: {
content: {
- "application/json": components["schemas"]["SapiSpaceModel"];
- };
- };
+ "application/json": components["schemas"]["SapiSpaceModel"]
+ }
+ }
/** Validation Error */
422: {
content: {
- "application/json": components["schemas"]["HTTPValidationError"];
- };
- };
- };
- };
+ "application/json": components["schemas"]["HTTPValidationError"]
+ }
+ }
+ }
+ }
/** Get all atlases known by siibra. */
get_all_atlases_atlases_get: {
responses: {
/** Successful Response */
200: {
content: {
- "application/json": components["schemas"]["SapiAtlasModel"][];
- };
- };
- };
- };
+ "application/json": components["schemas"]["SapiAtlasModel"][]
+ }
+ }
+ }
+ }
/** Get more information for a specific atlas with links to further objects. */
get_atlas_by_id_atlases__atlas_id__get: {
parameters: {
path: {
- atlas_id: string;
- };
- };
+ atlas_id: string
+ }
+ }
responses: {
/** Successful Response */
200: {
content: {
- "application/json": components["schemas"]["SapiAtlasModel"];
- };
- };
+ "application/json": components["schemas"]["SapiAtlasModel"]
+ }
+ }
/** Validation Error */
422: {
content: {
- "application/json": components["schemas"]["HTTPValidationError"];
- };
- };
- };
- };
+ "application/json": components["schemas"]["HTTPValidationError"]
+ }
+ }
+ }
+ }
/** Return all genes (name, acronym) in siibra */
get_gene_names_genes_get: {
responses: {
/** Successful Response */
200: {
content: {
- "application/json": unknown;
- };
- };
- };
- };
+ "application/json": unknown
+ }
+ }
+ }
+ }
/** Return all possible modalities */
get_all_available_modalities_features_get: {
responses: {
/** Successful Response */
200: {
content: {
- "application/json": unknown;
- };
- };
- };
- };
+ "application/json": unknown
+ }
+ }
+ }
+ }
}
export interface external {}
diff --git a/src/atlasComponents/sapi/type.ts b/src/atlasComponents/sapi/type.ts
index 9de24016f86a548458f9fccf0c088b0bf6b7b529..919649125ff7dfb908f3be42ee78ba271cfc2f67 100644
--- a/src/atlasComponents/sapi/type.ts
+++ b/src/atlasComponents/sapi/type.ts
@@ -65,7 +65,7 @@ export function guardPipe<
InputType,
GuardType extends InputType
>(
- guardFn: (input: InputType) => input is GuardType
+ guardFn: (input: InputType) => input is GuardType
): OperatorFunction<InputType, GuardType> {
return src => src.pipe(
map(val => {
diff --git a/src/atlasComponents/sapiViews/core/parcellation/previewParcellationUrl.pipe.ts b/src/atlasComponents/sapiViews/core/parcellation/previewParcellationUrl.pipe.ts
index 66a23202eeec67fa87b9d94ede25e6ad93283e4d..7c1a543002a3f533271b778e209c9b39f241b0d8 100644
--- a/src/atlasComponents/sapiViews/core/parcellation/previewParcellationUrl.pipe.ts
+++ b/src/atlasComponents/sapiViews/core/parcellation/previewParcellationUrl.pipe.ts
@@ -31,7 +31,7 @@ const previewImgMap = new Map([
/**
* used for directories
*/
- const previewNameToPngMap = new Map([
+const previewNameToPngMap = new Map([
['fibre architecture', 'fibre-long.png'],
['functional modes', 'difumo-128.png']
])
diff --git a/src/atlasComponents/sapiViews/core/region/region/region.base.directive.ts b/src/atlasComponents/sapiViews/core/region/region/region.base.directive.ts
index 4ff63ab42055f5ab35e85618db311102a9719ccd..3df077ac04f46f4d3fb1b91da27e230f53de0439 100644
--- a/src/atlasComponents/sapiViews/core/region/region/region.base.directive.ts
+++ b/src/atlasComponents/sapiViews/core/region/region/region.base.directive.ts
@@ -75,7 +75,7 @@ export class SapiViewsCoreRegionRegionBase {
/**
* color
*/
- let rgb = SAPIRegion.GetDisplayColor(this.region)
+ const rgb = SAPIRegion.GetDisplayColor(this.region)
this.regionRgbString = `rgb(${rgb.join(',')})`
const [_h, _s, l] = rgbToHsl(...rgb)
this.regionDarkmode = l < 0.4
diff --git a/src/atlasComponents/sapiViews/features/featureBadgeColor.pipe.ts b/src/atlasComponents/sapiViews/features/featureBadgeColor.pipe.ts
index d3caf6b137c0d870fd8ee9926eacbe3ca5e3c147..4e7704c1afe9cf250cf0e8417a05ef0ecb2b8486 100644
--- a/src/atlasComponents/sapiViews/features/featureBadgeColor.pipe.ts
+++ b/src/atlasComponents/sapiViews/features/featureBadgeColor.pipe.ts
@@ -8,9 +8,9 @@ import { SapiFeatureModel } from "src/atlasComponents/sapi";
export class FeatureBadgeColourPipe implements PipeTransform{
public transform(regionalFeature: SapiFeatureModel) {
- if (regionalFeature.type === "siibra/features/receptor") {
- return "accent"
- }
- return "default"
+ if (regionalFeature.type === "siibra/features/receptor") {
+ return "accent"
+ }
+ return "default"
}
}
diff --git a/src/atlasComponents/sapiViews/features/featureBadgeName.pipe.ts b/src/atlasComponents/sapiViews/features/featureBadgeName.pipe.ts
index 34e4f7dc62f1f2c3067083d8603e520cd7070d50..8072a85081587b7847123fafdbedcb355b0efcca 100644
--- a/src/atlasComponents/sapiViews/features/featureBadgeName.pipe.ts
+++ b/src/atlasComponents/sapiViews/features/featureBadgeName.pipe.ts
@@ -8,9 +8,9 @@ import { SapiFeatureModel } from "src/atlasComponents/sapi";
export class FeatureBadgeNamePipe implements PipeTransform{
public transform(regionalFeature: SapiFeatureModel) {
- if (regionalFeature.type === "siibra/features/receptor") {
- return "receptor density"
- }
- return null
+ if (regionalFeature.type === "siibra/features/receptor") {
+ return "receptor density"
+ }
+ return null
}
}
diff --git a/src/messagingGlue.ts b/src/messagingGlue.ts
index b7a5bbab5d1d86d5a0f1f68c0d2f44b127f898be..724841a7d13e9255e76ba5c4b0ad94e7393e91ad 100644
--- a/src/messagingGlue.ts
+++ b/src/messagingGlue.ts
@@ -72,7 +72,7 @@ export class MessagingGlue implements IWindowMessaging, OnDestroy {
"1"
],
transform: transform,
- clType: 'customlayer/nglayer' as 'customlayer/nglayer'
+ clType: 'customlayer/nglayer' as const
}
this.store.dispatch(
diff --git a/src/routerModule/util.ts b/src/routerModule/util.ts
index ad87e1fd8ca1e7c97e2edb92f49b491a61f2edc0..90a8f8ed5a53e3af86bfbe2d389ed4ed76558f37 100644
--- a/src/routerModule/util.ts
+++ b/src/routerModule/util.ts
@@ -1,6 +1,5 @@
import { encodeNumber, decodeToNumber, separator, encodeURIFull } from './cipher'
import { UrlSegment, UrlTree } from "@angular/router"
-import { getShader, PMAP_DEFAULT_CONFIG } from "src/util/constants"
import { Component } from "@angular/core"
import { atlasSelection, plugins } from "src/state"
diff --git a/src/state/atlasSelection/actions.ts b/src/state/atlasSelection/actions.ts
index d3f4f7735abe19dbc087da3c849a428b102dcfe0..14504de34a7a5afbf92da526fb356c79d706a779 100644
--- a/src/state/atlasSelection/actions.ts
+++ b/src/state/atlasSelection/actions.ts
@@ -85,7 +85,7 @@ export const clearSelectedRegions = createAction(
export const selectATPById = createAction(
`${nameSpace} selectATPById`,
props<{
- atlasId?: string,
+ atlasId?: string
templateId?: string
parcellationId?: string
}>()
diff --git a/src/state/atlasSelection/effects.ts b/src/state/atlasSelection/effects.ts
index e3c8e15da99ed5552519337487a94c497895b2b4..a4b4800eb8561038cba0ddfdcb61e7a5115e0fc4 100644
--- a/src/state/atlasSelection/effects.ts
+++ b/src/state/atlasSelection/effects.ts
@@ -16,12 +16,12 @@ export class Effect {
onAtlasSelectionSelectTmplParc = createEffect(() => this.action.pipe(
ofType(actions.selectAtlas),
filter(action => !!action.atlas),
- switchMap(action => {
- const selectedParc = action.atlas.parcellations.find(p => /290/.test(p["@id"])) || action.atlas.parcellations[0]
- return this.sapiSvc.getParcDetail(action.atlas["@id"], selectedParc["@id"], 100).then(
+ switchMap(({ atlas }) => {
+ const selectedParc = atlas.parcellations.find(p => /290/.test(p["@id"])) || atlas.parcellations[0]
+ return this.sapiSvc.getParcDetail(atlas["@id"], selectedParc["@id"], 100).then(
parcellation => ({
parcellation,
- atlas: action.atlas
+ atlas
})
)
}),
diff --git a/src/state/const.ts b/src/state/const.ts
index 29172b656f7af7c04a4857bcb4b7c9f416cc6f22..60e44f40724c7a562efb1040af23b1f001adacf9 100644
--- a/src/state/const.ts
+++ b/src/state/const.ts
@@ -3,11 +3,11 @@ import { annotation, atlasAppearance, atlasSelection, plugins, userInteraction,
export const nameSpace = `[state]`
export type MainState = {
- [userPreference.nameSpace]: userPreference.UserPreference,
- [atlasSelection.nameSpace]: atlasSelection.AtlasSelectionState,
- [userInterface.nameSpace]: userInterface.UiStore,
- [userInteraction.nameSpace]: userInteraction.UserInteraction,
- [annotation.nameSpace]: annotation.AnnotationState,
- [plugins.nameSpace]: plugins.PluginStore,
+ [userPreference.nameSpace]: userPreference.UserPreference
+ [atlasSelection.nameSpace]: atlasSelection.AtlasSelectionState
+ [userInterface.nameSpace]: userInterface.UiStore
+ [userInteraction.nameSpace]: userInteraction.UserInteraction
+ [annotation.nameSpace]: annotation.AnnotationState
+ [plugins.nameSpace]: plugins.PluginStore
[atlasAppearance.nameSpace]: atlasAppearance.AtlasAppearanceStore
}
diff --git a/src/state/userPreference/const.ts b/src/state/userPreference/const.ts
index c9a9daba8cd75df50382a8d91b1a502e25f43174..cd96c117aaac67a50928ea673f60faac73c86b86 100644
--- a/src/state/userPreference/const.ts
+++ b/src/state/userPreference/const.ts
@@ -1,4 +1,4 @@
-export const nameSpace = `[userPreference]`
+export const nameSpace = `[state.userPreference]`
export const maxGpuLimit = 1e9
export const minGpuLimit = 1e8
@@ -6,4 +6,4 @@ export const minGpuLimit = 1e8
export interface CSP{
'connect-src'?: string[]
'script-src'?: string[]
-}
\ No newline at end of file
+}
diff --git a/src/viewerModule/nehuba/config.service/type.ts b/src/viewerModule/nehuba/config.service/type.ts
index fc79b98557e80a05e49ae1c5f526a5763520c18d..c0e963ecb698abb300adfed021a38f56bdf24fca 100644
--- a/src/viewerModule/nehuba/config.service/type.ts
+++ b/src/viewerModule/nehuba/config.service/type.ts
@@ -24,7 +24,7 @@ export type NgConfigViewerState = {
export type NgConfig = {
showDefaultAnnotations: boolean
layers: Record<string, NgLayerSpec>
- gpuMemoryLimit: number,
+ gpuMemoryLimit: number
} & NgConfigViewerState
interface _NehubaConfig {
@@ -50,9 +50,9 @@ interface _NehubaConfig {
dataset: {
imageBackground: Vec4
initialNgState: NgConfig
- },
+ }
layout: {
- views: string,
+ views: string
planarSlicesBackground: Vec4
useNehubaPerspective: {
enableShiftDrag: boolean
@@ -70,11 +70,12 @@ interface _NehubaConfig {
sliceViewportSizeMultiplier: number
}
mesh: {
- backFaceColor: Vec4
+ removeOctant: Vec4
+ backFaceColor: Vec3
removeBasedOnNavigation: boolean
flipRemovedOctant: boolean
surfaceParcellation: boolean
- },
+ }
centerToOrigin: boolean
drawSubstrates: {
color: Vec4
diff --git a/src/viewerModule/nehuba/config.service/util.ts b/src/viewerModule/nehuba/config.service/util.ts
index b81660ed18b776d67be8eb629d42c8d201baafbf..a82cce3aa19f61b13e3ae2a4a8402c2ccab6cd7a 100644
--- a/src/viewerModule/nehuba/config.service/util.ts
+++ b/src/viewerModule/nehuba/config.service/util.ts
@@ -28,7 +28,7 @@ const fsAverageKeyVal = {
* in order to maintain backwards compat with url encoding of selected regions
* TODO setup a sentry to catch if these are ever used. if not, retire the hard coding
*/
- const BACKCOMAP_KEY_DICT = {
+const BACKCOMAP_KEY_DICT = {
// human multi level
'juelich/iav/atlas/v1.0.0/1': {
@@ -260,7 +260,7 @@ export const fromRootStore = {
export function getRegionLabelIndex(atlas: SapiAtlasModel, tmpl: SapiSpaceModel, parc: SapiParcellationModel, region: SapiRegionModel) {
const lblIdx = Number(region?.hasAnnotation?.internalIdentifier)
- if (lblIdx === NaN) return null
+ if (isNaN(lblIdx)) return null
return lblIdx
}
diff --git a/src/viewerModule/nehuba/nehubaViewer/nehubaViewer.component.ts b/src/viewerModule/nehuba/nehubaViewer/nehubaViewer.component.ts
index d8cd7f7430ffaeb87de5319f3fbdfb74cfa89f3f..69552dd1d340fc984ac7724f261bbb11b3045200 100644
--- a/src/viewerModule/nehuba/nehubaViewer/nehubaViewer.component.ts
+++ b/src/viewerModule/nehuba/nehubaViewer/nehubaViewer.component.ts
@@ -99,9 +99,9 @@ export class NehubaViewerUnit implements OnInit, OnDestroy {
@Output() public mouseoverLandmarkEmitter: EventEmitter<string> = new EventEmitter()
@Output() public mouseoverUserlandmarkEmitter: EventEmitter<string> = new EventEmitter()
@Output() public regionSelectionEmitter: EventEmitter<{
- segment: number,
+ segment: number
layer: {
- name?: string,
+ name?: string
url?: string
}}> = new EventEmitter()
@Output() public errorEmitter: EventEmitter<any> = new EventEmitter()
@@ -435,7 +435,6 @@ export class NehubaViewerUnit implements OnInit, OnDestroy {
public loadNehuba() {
this.nehubaViewer = this.exportNehuba.createNehubaViewer(this.config, (err: string) => {
/* print in debug mode */
- debugger
this.log.error(err)
})
diff --git a/src/viewerModule/nehuba/nehubaViewerGlue/nehubaViewerGlue.component.ts b/src/viewerModule/nehuba/nehubaViewerGlue/nehubaViewerGlue.component.ts
index 49b7c0b02e493dd93048ca2be5fa727f69da3052..8005d2cabd1b010dec84cc64f2260e22d1232864 100644
--- a/src/viewerModule/nehuba/nehubaViewerGlue/nehubaViewerGlue.component.ts
+++ b/src/viewerModule/nehuba/nehubaViewerGlue/nehubaViewerGlue.component.ts
@@ -264,8 +264,8 @@ export class NehubaGlueCmp implements IViewer<'nehuba'>, OnDestroy, AfterViewIni
/**
* clear existing container
*/
- this.viewerUnit = null
- this.nehubaContainerDirective && this.nehubaContainerDirective.clear()
+ this.viewerUnit = null
+ this.nehubaContainerDirective && this.nehubaContainerDirective.clear()
}
private async loadNewViewer(ATP: { atlas: SapiAtlasModel, parcellation: SapiParcellationModel, template: SapiSpaceModel }, baseLayers: NgLayerCustomLayer[]) {
@@ -275,8 +275,8 @@ export class NehubaGlueCmp implements IViewer<'nehuba'>, OnDestroy, AfterViewIni
}
const overwritingInitState = this.navigation
- ? cvtNavigationObjToNehubaConfig(this.navigation, config.dataset.initialNgState)
- : {}
+ ? cvtNavigationObjToNehubaConfig(this.navigation, config.dataset.initialNgState)
+ : {}
config.dataset.initialNgState = {
...config.dataset.initialNgState,
diff --git a/src/viewerModule/nehuba/store/util.ts b/src/viewerModule/nehuba/store/util.ts
index 7add0cda2ecb55360a6302691fbf64b09aec68a5..8fefc1aea4cfe9cb9e59dfc3fe071b351535dc67 100644
--- a/src/viewerModule/nehuba/store/util.ts
+++ b/src/viewerModule/nehuba/store/util.ts
@@ -83,8 +83,8 @@ export const fromRootStore = {
volumeMetadata: found,
}
}).filter(
- v => !!v.volumeMetadata?.labelIndicies
- )
+ v => !!v.volumeMetadata?.labelIndicies
+ )
})
)
}),
diff --git a/tslint.json b/tslint.json
deleted file mode 100644
index d96430c1d0da68127028648f02108ce49b766912..0000000000000000000000000000000000000000
--- a/tslint.json
+++ /dev/null
@@ -1,38 +0,0 @@
-{
- "defaultSeverity": "error",
- "extends": [
- "tslint:recommended"
- ],
- "jsRules": {},
- "rules": {
- "variable-name": {
- "options": [
- "allow-leading-underscore"
- ]
- },
- "indent": [true, "spaces", 2],
- "quotemark":false,
- "semicolon":false,
- "object-literal-sort-keys":false,
- "arrow-parens": false,
- "no-var-requires": false,
- "ban-types": false,
- "no-require-imports": {
- "severity":"off"
- },
- "interface-name": {
- "severity": "off"
- },
- "member-ordering": {
- "options": [
- {
- "order": "statics-first",
- "alphabetize": true
- }
- ],
- "severity": "off"
- },
- "max-line-length": false
- },
- "rulesDirectory": []
-}
\ No newline at end of file