diff --git a/.gitignore b/.gitignore
index 3a8ec2b3fbf30c606a1cdd6ca08b82d3f907791b..d406159ec9eec8b0d33917b07cd4f38f515ff722 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,3 +1,4 @@
node_modules
dist
-package-lock.json
\ No newline at end of file
+package-lock.json
+src/res/raw
\ No newline at end of file
diff --git a/src/res/raw/ABACenters.json b/src/res/raw/ABACenters.json
deleted file mode 100644
index ba4183d2794e1c89fb832e877f847c2b353c1551..0000000000000000000000000000000000000000
--- a/src/res/raw/ABACenters.json
+++ /dev/null
@@ -1,29705 +0,0 @@
-{
- "success":true,
- "id":0,
- "start_row":0,
- "num_rows":1,
- "total_rows":1,
- "msg":[
- {
- "id":997,
- "atlas_id":-1,
- "ontology_id":1,
- "acronym":"root",
- "name":"root",
- "color_hex_triplet":"FFFFFF",
- "graph_order":0,
- "st_level":0,
- "hemisphere_id":3,
- "parent_structure_id":null,
- "centers":[
- [
- 7430,
- 3990,
- 3760
- ],
- [
- 7430,
- 3990,
- 7640
- ]
- ],
- "children":[
- {
- "id":8,
- "atlas_id":0,
- "ontology_id":1,
- "acronym":"grey",
- "name":"Basic cell groups and regions",
- "color_hex_triplet":"BFDAE3",
- "graph_order":1,
- "st_level":1,
- "hemisphere_id":3,
- "parent_structure_id":997,
- "centers":[
- [
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- 3970,
- 3730
- ],
- [
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- 3970,
- 7670
- ]
- ],
- "children":[
- {
- "id":567,
- "atlas_id":70,
- "ontology_id":1,
- "acronym":"CH",
- "name":"Cerebrum",
- "color_hex_triplet":"B0F0FF",
- "graph_order":2,
- "st_level":2,
- "hemisphere_id":3,
- "parent_structure_id":8,
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- [
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- 3740,
- 3350
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- [
- 5770,
- 3740,
- 8050
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- ],
- "children":[
- {
- "id":688,
- "atlas_id":85,
- "ontology_id":1,
- "acronym":"CTX",
- "name":"Cerebral cortex",
- "color_hex_triplet":"B0FFB8",
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- 8680
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- "children":[
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- "name":"Cortical plate",
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- "children":[
- {
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- ],
- "children":[
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- "acronym":"FRP",
- "name":"Frontal pole, cerebral cortex",
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- {
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- "name":"Primary somatosensory area, layer 6b",
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- "children":[
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- {
- "id":353,
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- "acronym":"SSp-n",
- "name":"Primary somatosensory area, nose",
- "color_hex_triplet":"188064",
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- "children":[
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- "parent_structure_id":824,
- "children":[
- {
- "id":547,
- "atlas_id":492,
- "ontology_id":1,
- "acronym":"dlf",
- "name":"dorsal longitudinal fascicle",
- "color_hex_triplet":"CCCCCC",
- "graph_order":1290,
- "st_level":9,
- "hemisphere_id":3,
- "parent_structure_id":70,
- "children":[
-
- ]
- },
- {
- "id":563,
- "atlas_id":494,
- "ontology_id":1,
- "acronym":"dtt",
- "name":"dorsal tegmental tract",
- "color_hex_triplet":"CCCCCC",
- "graph_order":1291,
- "st_level":9,
- "hemisphere_id":3,
- "parent_structure_id":70,
- "children":[
-
- ]
- }
- ]
- }
- ]
- }
- ]
- }
- ]
- },
- {
- "id":73,
- "atlas_id":716,
- "ontology_id":1,
- "acronym":"VS",
- "name":"ventricular systems",
- "color_hex_triplet":"AAAAAA",
- "graph_order":1292,
- "st_level":1,
- "hemisphere_id":3,
- "parent_structure_id":997,
- "centers":[
- [
- 7790,
- 3740,
- 5680
- ],
- [
- 7790,
- 3740,
- 5720
- ]
- ],
- "children":[
- {
- "id":81,
- "atlas_id":717,
- "ontology_id":1,
- "acronym":"VL",
- "name":"lateral ventricle",
- "color_hex_triplet":"AAAAAA",
- "graph_order":1293,
- "st_level":8,
- "hemisphere_id":3,
- "parent_structure_id":73,
- "centers":[
- [
- 6410,
- 3170,
- 3480
- ],
- [
- 6410,
- 3170,
- 7920
- ]
- ],
- "children":[
- {
- "id":89,
- "atlas_id":718,
- "ontology_id":1,
- "acronym":"RC",
- "name":"rhinocele",
- "color_hex_triplet":"AAAAAA",
- "graph_order":1294,
- "st_level":9,
- "hemisphere_id":3,
- "parent_structure_id":81,
- "children":[
-
- ]
- },
- {
- "id":98,
- "atlas_id":719,
- "ontology_id":1,
- "acronym":"SEZ",
- "name":"subependymal zone",
- "color_hex_triplet":"AAAAAA",
- "graph_order":1295,
- "st_level":9,
- "hemisphere_id":3,
- "parent_structure_id":81,
- "centers":[
- [
- 4840,
- 2920,
- 4660
- ],
- [
- 4840,
- 2920,
- 6740
- ]
- ],
- "children":[
-
- ]
- },
- {
- "id":108,
- "atlas_id":720,
- "ontology_id":1,
- "acronym":"chpl",
- "name":"choroid plexus",
- "color_hex_triplet":"AAAAAA",
- "graph_order":1296,
- "st_level":9,
- "hemisphere_id":3,
- "parent_structure_id":81,
- "centers":[
- [
- 7580,
- 4870,
- 2740
- ],
- [
- 7580,
- 4870,
- 8660
- ]
- ],
- "children":[
-
- ]
- },
- {
- "id":116,
- "atlas_id":721,
- "ontology_id":1,
- "acronym":"chfl",
- "name":"choroid fissure",
- "color_hex_triplet":"AAAAAA",
- "graph_order":1297,
- "st_level":9,
- "hemisphere_id":3,
- "parent_structure_id":81,
- "children":[
-
- ]
- }
- ]
- },
- {
- "id":124,
- "atlas_id":722,
- "ontology_id":1,
- "acronym":"IVF",
- "name":"interventricular foramen",
- "color_hex_triplet":"AAAAAA",
- "graph_order":1298,
- "st_level":8,
- "hemisphere_id":3,
- "parent_structure_id":73,
- "children":[
-
- ]
- },
- {
- "id":129,
- "atlas_id":723,
- "ontology_id":1,
- "acronym":"V3",
- "name":"third ventricle",
- "color_hex_triplet":"AAAAAA",
- "graph_order":1299,
- "st_level":8,
- "hemisphere_id":3,
- "parent_structure_id":73,
- "centers":[
- [
- 5980,
- 3680,
- 5550
- ],
- [
- 5980,
- 3680,
- 5850
- ]
- ],
- "children":[
-
- ]
- },
- {
- "id":140,
- "atlas_id":724,
- "ontology_id":1,
- "acronym":"AQ",
- "name":"cerebral aqueduct",
- "color_hex_triplet":"AAAAAA",
- "graph_order":1300,
- "st_level":8,
- "hemisphere_id":3,
- "parent_structure_id":73,
- "centers":[
- [
- 10140,
- 2970,
- 5540
- ],
- [
- 10140,
- 2970,
- 5860
- ]
- ],
- "children":[
-
- ]
- },
- {
- "id":145,
- "atlas_id":725,
- "ontology_id":1,
- "acronym":"V4",
- "name":"fourth ventricle",
- "color_hex_triplet":"AAAAAA",
- "graph_order":1301,
- "st_level":8,
- "hemisphere_id":3,
- "parent_structure_id":73,
- "centers":[
- [
- 11620,
- 4470,
- 4400
- ],
- [
- 11620,
- 4470,
- 7000
- ]
- ],
- "children":[
- {
- "id":153,
- "atlas_id":726,
- "ontology_id":1,
- "acronym":"V4r",
- "name":"lateral recess",
- "color_hex_triplet":"AAAAAA",
- "graph_order":1302,
- "st_level":9,
- "hemisphere_id":3,
- "parent_structure_id":145,
- "centers":[
- [
- 11740,
- 5070,
- 3410
- ],
- [
- 11740,
- 5070,
- 7990
- ]
- ],
- "children":[
-
- ]
- }
- ]
- },
- {
- "id":164,
- "atlas_id":727,
- "ontology_id":1,
- "acronym":"c",
- "name":"central canal, spinal cord/medulla",
- "color_hex_triplet":"AAAAAA",
- "graph_order":1303,
- "st_level":8,
- "hemisphere_id":3,
- "parent_structure_id":73,
- "centers":[
- [
- 12720,
- 5570,
- 5690
- ],
- [
- 12720,
- 5570,
- 5710
- ]
- ],
- "children":[
-
- ]
- }
- ]
- },
- {
- "id":1024,
- "atlas_id":693,
- "ontology_id":1,
- "acronym":"grv",
- "name":"grooves",
- "color_hex_triplet":"AAAAAA",
- "graph_order":1304,
- "st_level":1,
- "hemisphere_id":3,
- "parent_structure_id":997,
- "children":[
- {
- "id":1032,
- "atlas_id":694,
- "ontology_id":1,
- "acronym":"grv of CTX",
- "name":"grooves of the cerebral cortex",
- "color_hex_triplet":"AAAAAA",
- "graph_order":1305,
- "st_level":7,
- "hemisphere_id":3,
- "parent_structure_id":1024,
- "children":[
- {
- "id":1055,
- "atlas_id":697,
- "ontology_id":1,
- "acronym":"eg",
- "name":"endorhinal groove",
- "color_hex_triplet":"AAAAAA",
- "graph_order":1306,
- "st_level":8,
- "hemisphere_id":3,
- "parent_structure_id":1032,
- "children":[
-
- ]
- },
- {
- "id":1063,
- "atlas_id":698,
- "ontology_id":1,
- "acronym":"hf",
- "name":"hippocampal fissure",
- "color_hex_triplet":"AAAAAA",
- "graph_order":1307,
- "st_level":8,
- "hemisphere_id":3,
- "parent_structure_id":1032,
- "children":[
-
- ]
- },
- {
- "id":1071,
- "atlas_id":699,
- "ontology_id":1,
- "acronym":"rf",
- "name":"rhinal fissure",
- "color_hex_triplet":"AAAAAA",
- "graph_order":1308,
- "st_level":8,
- "hemisphere_id":3,
- "parent_structure_id":1032,
- "children":[
-
- ]
- },
- {
- "id":1078,
- "atlas_id":700,
- "ontology_id":1,
- "acronym":"ri",
- "name":"rhinal incisure",
- "color_hex_triplet":"AAAAAA",
- "graph_order":1309,
- "st_level":8,
- "hemisphere_id":3,
- "parent_structure_id":1032,
- "children":[
-
- ]
- }
- ]
- },
- {
- "id":1040,
- "atlas_id":695,
- "ontology_id":1,
- "acronym":"grv of CBX",
- "name":"grooves of the cerebellar cortex",
- "color_hex_triplet":"AAAAAA",
- "graph_order":1310,
- "st_level":7,
- "hemisphere_id":3,
- "parent_structure_id":1024,
- "children":[
- {
- "id":1087,
- "atlas_id":701,
- "ontology_id":1,
- "acronym":"pce",
- "name":"precentral fissure",
- "color_hex_triplet":"AAAAAA",
- "graph_order":1311,
- "st_level":8,
- "hemisphere_id":3,
- "parent_structure_id":1040,
- "children":[
-
- ]
- },
- {
- "id":1095,
- "atlas_id":702,
- "ontology_id":1,
- "acronym":"pcf",
- "name":"preculminate fissure",
- "color_hex_triplet":"AAAAAA",
- "graph_order":1312,
- "st_level":8,
- "hemisphere_id":3,
- "parent_structure_id":1040,
- "children":[
-
- ]
- },
- {
- "id":1103,
- "atlas_id":703,
- "ontology_id":1,
- "acronym":"pri",
- "name":"primary fissure",
- "color_hex_triplet":"AAAAAA",
- "graph_order":1313,
- "st_level":8,
- "hemisphere_id":3,
- "parent_structure_id":1040,
- "children":[
-
- ]
- },
- {
- "id":1112,
- "atlas_id":704,
- "ontology_id":1,
- "acronym":"psf",
- "name":"posterior superior fissure",
- "color_hex_triplet":"AAAAAA",
- "graph_order":1314,
- "st_level":8,
- "hemisphere_id":3,
- "parent_structure_id":1040,
- "children":[
-
- ]
- },
- {
- "id":1119,
- "atlas_id":705,
- "ontology_id":1,
- "acronym":"ppf",
- "name":"prepyramidal fissure",
- "color_hex_triplet":"AAAAAA",
- "graph_order":1315,
- "st_level":8,
- "hemisphere_id":3,
- "parent_structure_id":1040,
- "children":[
-
- ]
- },
- {
- "id":3,
- "atlas_id":707,
- "ontology_id":1,
- "acronym":"sec",
- "name":"secondary fissure",
- "color_hex_triplet":"AAAAAA",
- "graph_order":1316,
- "st_level":8,
- "hemisphere_id":3,
- "parent_structure_id":1040,
- "children":[
-
- ]
- },
- {
- "id":11,
- "atlas_id":708,
- "ontology_id":1,
- "acronym":"plf",
- "name":"posterolateral fissure",
- "color_hex_triplet":"AAAAAA",
- "graph_order":1317,
- "st_level":8,
- "hemisphere_id":3,
- "parent_structure_id":1040,
- "children":[
-
- ]
- },
- {
- "id":18,
- "atlas_id":709,
- "ontology_id":1,
- "acronym":"nf",
- "name":"nodular fissure",
- "color_hex_triplet":"AAAAAA",
- "graph_order":1318,
- "st_level":8,
- "hemisphere_id":3,
- "parent_structure_id":1040,
- "children":[
-
- ]
- },
- {
- "id":25,
- "atlas_id":710,
- "ontology_id":1,
- "acronym":"sif",
- "name":"simple fissure",
- "color_hex_triplet":"AAAAAA",
- "graph_order":1319,
- "st_level":8,
- "hemisphere_id":3,
- "parent_structure_id":1040,
- "children":[
-
- ]
- },
- {
- "id":34,
- "atlas_id":711,
- "ontology_id":1,
- "acronym":"icf",
- "name":"intercrural fissure",
- "color_hex_triplet":"AAAAAA",
- "graph_order":1320,
- "st_level":8,
- "hemisphere_id":3,
- "parent_structure_id":1040,
- "children":[
-
- ]
- },
- {
- "id":43,
- "atlas_id":712,
- "ontology_id":1,
- "acronym":"apf",
- "name":"ansoparamedian fissure",
- "color_hex_triplet":"AAAAAA",
- "graph_order":1321,
- "st_level":8,
- "hemisphere_id":3,
- "parent_structure_id":1040,
- "children":[
-
- ]
- },
- {
- "id":49,
- "atlas_id":713,
- "ontology_id":1,
- "acronym":"ipf",
- "name":"intraparafloccular fissure",
- "color_hex_triplet":"AAAAAA",
- "graph_order":1322,
- "st_level":8,
- "hemisphere_id":3,
- "parent_structure_id":1040,
- "children":[
-
- ]
- },
- {
- "id":57,
- "atlas_id":714,
- "ontology_id":1,
- "acronym":"pms",
- "name":"paramedian sulcus",
- "color_hex_triplet":"AAAAAA",
- "graph_order":1323,
- "st_level":8,
- "hemisphere_id":3,
- "parent_structure_id":1040,
- "children":[
-
- ]
- },
- {
- "id":65,
- "atlas_id":715,
- "ontology_id":1,
- "acronym":"pfs",
- "name":"parafloccular sulcus",
- "color_hex_triplet":"AAAAAA",
- "graph_order":1324,
- "st_level":8,
- "hemisphere_id":3,
- "parent_structure_id":1040,
- "children":[
-
- ]
- }
- ]
- },
- {
- "id":624,
- "atlas_id":926,
- "ontology_id":1,
- "acronym":"IPF",
- "name":"Interpeduncular fossa",
- "color_hex_triplet":"AAAAAA",
- "graph_order":1325,
- "st_level":7,
- "hemisphere_id":3,
- "parent_structure_id":1024,
- "children":[
-
- ]
- }
- ]
- },
- {
- "id":304325711,
- "atlas_id":null,
- "ontology_id":1,
- "acronym":"retina",
- "name":"retina",
- "color_hex_triplet":"7F2E7E",
- "graph_order":1326,
- "st_level":1,
- "hemisphere_id":3,
- "parent_structure_id":997,
- "children":[
-
- ]
- }
- ]
- }
- ]
-}
\ No newline at end of file
diff --git a/src/res/raw/allenFromCamila/hbp-00005.json b/src/res/raw/allenFromCamila/hbp-00005.json
deleted file mode 100644
index 1d4f5740e821eeae9c444fc0ff8925743fadebd9..0000000000000000000000000000000000000000
--- a/src/res/raw/allenFromCamila/hbp-00005.json
+++ /dev/null
@@ -1,6 +0,0 @@
-{
- "reference_atlas":"CCF v3",
- "name":"hbp-00005",
- "HBP_Storage_path":"bp00sp1/hbp-00005",
- "Primary region(s)":"Hippocampal region"
-}
\ No newline at end of file
diff --git a/src/res/raw/allenFromCamila/hbp-00011_Tg2576.json b/src/res/raw/allenFromCamila/hbp-00011_Tg2576.json
deleted file mode 100644
index 09745ec7d82e42f38dd1cfa527220d97d401b128..0000000000000000000000000000000000000000
--- a/src/res/raw/allenFromCamila/hbp-00011_Tg2576.json
+++ /dev/null
@@ -1,6 +0,0 @@
-{
- "reference_atlas":"CCF v3",
- "name":"hbp-00011_Tg2576",
- "HBP_Storage_path":"bp00sp1/Cherubini_RUP_T.1.1.6_nar030/hbp-00011",
- "Primary region(s)":"Field CA1"
-}
\ No newline at end of file
diff --git a/src/res/raw/allenFromCamila/hbp-00012_APD12.json b/src/res/raw/allenFromCamila/hbp-00012_APD12.json
deleted file mode 100644
index e061f26ac87b2caec74135b24e28108c68b1eb1e..0000000000000000000000000000000000000000
--- a/src/res/raw/allenFromCamila/hbp-00012_APD12.json
+++ /dev/null
@@ -1,6 +0,0 @@
-{
- "reference_atlas":"CCF v3",
- "name":"hbp-00012_APD12",
- "HBP_Storage_path":"bp00sp1/Cherubini_RUP_T.1.1.6_nar033/hbp-00012",
- "Primary region(s)":"Field CA1"
-}
\ No newline at end of file
diff --git a/src/res/raw/allenFromCamila/hbp-00013_APD13.json b/src/res/raw/allenFromCamila/hbp-00013_APD13.json
deleted file mode 100644
index 04659cde3f02595654102c71ba32331f5f5677c8..0000000000000000000000000000000000000000
--- a/src/res/raw/allenFromCamila/hbp-00013_APD13.json
+++ /dev/null
@@ -1,6 +0,0 @@
-{
- "reference_atlas":"CCF v3",
- "name":"hbp-00013_APD13",
- "HBP_Storage_path":"bp00sp1/Cherubini_RUP_T.1.1.6_nar029/hbp-00013",
- "Primary region(s)":"Field CA1"
-}
\ No newline at end of file
diff --git a/src/res/raw/allenFromCamila/hbp-00014_APD14.json b/src/res/raw/allenFromCamila/hbp-00014_APD14.json
deleted file mode 100644
index 9c8ae150346b51bfe93467c921191afd991a3901..0000000000000000000000000000000000000000
--- a/src/res/raw/allenFromCamila/hbp-00014_APD14.json
+++ /dev/null
@@ -1,6 +0,0 @@
-{
- "reference_atlas":"CCF v3",
- "name":"hbp-00014_APD14",
- "HBP_Storage_path":"bp00sp1/Cherubini_RUP_T.1.1.6_nar028/hbp-00014",
- "Primary region(s)":"Field CA1"
-}
\ No newline at end of file
diff --git a/src/res/raw/allenFromCamila/hbp-00015_sIPSCs.json b/src/res/raw/allenFromCamila/hbp-00015_sIPSCs.json
deleted file mode 100644
index 7c37a2155526a876cc9f3c83342477b50f881894..0000000000000000000000000000000000000000
--- a/src/res/raw/allenFromCamila/hbp-00015_sIPSCs.json
+++ /dev/null
@@ -1,6 +0,0 @@
-{
- "reference_atlas":"CCF v3",
- "name":"hbp-00015_sIPSCs",
- "HBP_Storage_path":"bp00sp1/Cherubini_RUP_T.1.1.6_nar032/hbp-00015",
- "Primary region(s)":"Field CA1"
-}
\ No newline at end of file
diff --git a/src/res/raw/allenFromCamila/hbp-00023_GAD67.json b/src/res/raw/allenFromCamila/hbp-00023_GAD67.json
deleted file mode 100644
index dd1fc488539ed3c4e7a42e6366d81449e1a33809..0000000000000000000000000000000000000000
--- a/src/res/raw/allenFromCamila/hbp-00023_GAD67.json
+++ /dev/null
@@ -1,9 +0,0 @@
-{
- "Reference_atlas":"CCF v3",
- "Name":"hbp-00023_GAD67",
- "HBP_storage_path":"bp00sp01/Defelipe_RUP_T1.2.3/hbp-00023/",
- "Primary_regions":[
- "Primary somatosensory area, lower limb",
- "Primary motor area"
- ]
-}
\ No newline at end of file
diff --git a/src/res/raw/allenFromCamila/hbp-00028.json b/src/res/raw/allenFromCamila/hbp-00028.json
deleted file mode 100644
index 14963662054300e3bd47c2272b56945134a0c2c8..0000000000000000000000000000000000000000
--- a/src/res/raw/allenFromCamila/hbp-00028.json
+++ /dev/null
@@ -1,71 +0,0 @@
-{
- "reference_atlas":"CCF v3",
- "name":"hbp-00028",
- "HBP_Storage_path":"bp00sp01/Freund_RUP_T1.2.4/hbp-00028/",
- "Semantic links":[
- {
- "cell_name":"d141029_0301",
- "Primary region(s)":"Field CA1, stratum radiatum"
- },
- {
- "cell_name":"d150205_0101",
- "Primary region(s)":"Ammon's horn"
- },
- {
- "cell_name":"s141027_0401",
- "Primary region(s)":"Field CA1, stratum radiatum"
- },
- {
- "cell_name":"d150205_0201",
- "Primary region(s)":"Field CA1, pyramidal layer"
- },
- {
- "cell_name":"d150205_0301",
- "Primary region(s)":"Field CA1, pyramidal layer"
- },
- {
- "cell_name":"s150630_0201",
- "Primary region(s)":"Field CA1, pyramidal layer"
- },
- {
- "cell_name":"s151208_0101",
- "Primary region(s)":"Field CA1, pyramidal layer"
- },
- {
- "cell_name":"s140327_0301",
- "Primary region(s)":"Ammon's horn"
- },
- {
- "cell_name":"s140524_0301",
- "Primary region(s)":"Ammon's horn"
- },
- {
- "cell_name":"s140408_0301",
- "Primary region(s)":"Ammon's horn"
- },
- {
- "cell_name":"s140615_0201",
- "Primary region(s)":"Ammon's horn"
- },
- {
- "cell_name":"s14008_0101",
- "Primary region(s)":"Ammon's horn"
- },
- {
- "cell_name":"s141027_0201",
- "Primary region(s)":"Ammon's horn"
- },
- {
- "cell_name":"s150420_0302",
- "Primary region(s)":"Field CA3, pyramidal layer"
- },
- {
- "cell_name":"s150421_0502",
- "Primary region(s)":"Field CA3, pyramidal layer"
- },
- {
- "cell_name":"s140327_0601",
- "Primary region(s)":"Ammon's horn"
- }
- ]
-}
\ No newline at end of file
diff --git a/src/res/raw/allenFromCamila/hbp-00552_GCaMP6.json b/src/res/raw/allenFromCamila/hbp-00552_GCaMP6.json
deleted file mode 100644
index 37b5193bd3d09ee1f0759e593fdf89a4dc37f989..0000000000000000000000000000000000000000
--- a/src/res/raw/allenFromCamila/hbp-00552_GCaMP6.json
+++ /dev/null
@@ -1,32 +0,0 @@
-{
- "reference_atlas":"CCF v3",
- "name":"hbp-00552_GCaMP6.json",
- "HBP_Storage_path":"bp00sp01/Pavone_SGA1_1.3.2/hbp-00552/GCaMP6/",
- "Primary region(s)":"Anterior cingulate area, dorsal part; Anterolateral visual area; Posteromedial visual area; Primary motor area; Primary somatosensory area, barrel field; Primary somatosensory area, lower limb; Primary somatosensory area, nose; Primary somatosensory area, trunk; Primary somatosensory area, unassigned; Primary somatosensory area, upper limb; Primary visual area; Retrosplenial area, dorsal part; Retrosplenial area, lateral agranular part; Retrosplenial area, ventral part; Rostrolateral area; Secondary motor area",
- "Landmarks":[
- {
- "name":"upper left corner",
- "x":230,
- "y":294,
- "z":322.5
- },
- {
- "name":"upper right corner",
- "x":54.8,
- "y":277.2,
- "z":322.5
- },
- {
- "name":"lower left corner",
- "x":230,
- "y":294,
- "z":146.5
- },
- {
- "name":"lower right corner",
- "x":54.8,
- "y":277.2,
- "z":146.5
- }
- ]
-}
\ No newline at end of file
diff --git a/src/res/raw/allenFromCamila/hbp-00648_AFmr1_140213.json b/src/res/raw/allenFromCamila/hbp-00648_AFmr1_140213.json
deleted file mode 100644
index 6666e685f3cd7d5b1c396acd3d77b557a8927848..0000000000000000000000000000000000000000
--- a/src/res/raw/allenFromCamila/hbp-00648_AFmr1_140213.json
+++ /dev/null
@@ -1,23 +0,0 @@
-{
- "Reference_atlas":"CCF v3",
- "Name":"hbp-00648_AFmr1_140213",
- "HBP_storage_path":"bp00sp03/Sanchez_SGA1_T3.2.3/hbp-00648/",
- "Semantic links":[
- {
- "Sample ID":"PrL-4",
- "Primary region":"Prelimbic area"
- },
- {
- "Sample ID":"M-4",
- "Primary region":"Primary motor area"
- },
- {
- "Sample ID":"S-4",
- "Primary region":"Primary somatosensory area"
- },
- {
- "Sample ID":"V-4",
- "Primary region":"Anteromedial visual area"
- }
- ]
-}
\ No newline at end of file
diff --git a/src/res/raw/allenFromCamila/hbp-00648_AFmr1_140220.json b/src/res/raw/allenFromCamila/hbp-00648_AFmr1_140220.json
deleted file mode 100644
index 3be703d330b73c978c055510cd10bfbdfd663cdb..0000000000000000000000000000000000000000
--- a/src/res/raw/allenFromCamila/hbp-00648_AFmr1_140220.json
+++ /dev/null
@@ -1,23 +0,0 @@
-{
- "Reference_atlas":"CCF v3",
- "Name":"hbp-00648_AFmr1_140220",
- "HBP_storage_path":"bp00sp03/Sanchez_SGA1_T3.2.3/hbp-00648/",
- "Semantic links":[
- {
- "Sample ID":"PrL-1",
- "Primary region":"Prelimbic area"
- },
- {
- "Sample ID":"M-1",
- "Primary region":"Primary motor area"
- },
- {
- "Sample ID":"S-1",
- "Primary region":"Primary somatosensory area"
- },
- {
- "Sample ID":"V-1",
- "Primary region":"Anteromedial visual area"
- }
- ]
-}
\ No newline at end of file
diff --git a/src/res/raw/allenFromCamila/hbp-00648_AFmr1_140304.json b/src/res/raw/allenFromCamila/hbp-00648_AFmr1_140304.json
deleted file mode 100644
index 12aee9705ac7bc38e9237b3b1b9d16aaa6974c92..0000000000000000000000000000000000000000
--- a/src/res/raw/allenFromCamila/hbp-00648_AFmr1_140304.json
+++ /dev/null
@@ -1,23 +0,0 @@
-{
- "Reference_atlas":"CCF v3",
- "Name":"hbp-00648_AFmr1_140304",
- "HBP_storage_path":"bp00sp03/Sanchez_SGA1_T3.2.3/hbp-00648/",
- "Semantic links":[
- {
- "Sample ID":"PrL-2",
- "Primary region":"Prelimbic area"
- },
- {
- "Sample ID":"M-2",
- "Primary region":"Primary motor area"
- },
- {
- "Sample ID":"S-2",
- "Primary region":"Primary somatosensory area"
- },
- {
- "Sample ID":"V-2",
- "Primary region":"Anteromedial visual area"
- }
- ]
-}
\ No newline at end of file
diff --git a/src/res/raw/allenFromCamila/hbp-00648_AFmr1_140514.json b/src/res/raw/allenFromCamila/hbp-00648_AFmr1_140514.json
deleted file mode 100644
index a507c72b5c582fa782886c4e55c4293a635e7d8d..0000000000000000000000000000000000000000
--- a/src/res/raw/allenFromCamila/hbp-00648_AFmr1_140514.json
+++ /dev/null
@@ -1,23 +0,0 @@
-{
- "Reference_atlas":"CCF v3",
- "Name":"hbp-00648_AFmr1_140514",
- "HBP_storage_path":"bp00sp03/Sanchez_SGA1_T3.2.3/hbp-00648/",
- "Semantic links":[
- {
- "Sample ID":"PrL-3",
- "Primary region":"Prelimbic area"
- },
- {
- "Sample ID":"M-3",
- "Primary region":"Primary motor area"
- },
- {
- "Sample ID":"S-3",
- "Primary region":"Primary somatosensory area"
- },
- {
- "Sample ID":"V-3",
- "Primary region":"Anteromedial visual area"
- }
- ]
-}
\ No newline at end of file
diff --git a/src/res/raw/allenFromCamila/hbp-00648_AFmr1_150505.json b/src/res/raw/allenFromCamila/hbp-00648_AFmr1_150505.json
deleted file mode 100644
index 2a6a716b4c1c8c705509a6023ae6099ff86786bc..0000000000000000000000000000000000000000
--- a/src/res/raw/allenFromCamila/hbp-00648_AFmr1_150505.json
+++ /dev/null
@@ -1,23 +0,0 @@
-{
- "Reference_atlas":"CCF v3",
- "Name":"hbp-00648_AFmr1_150505",
- "HBP_storage_path":"bp00sp03/Sanchez_SGA1_T3.2.3/hbp-00648/",
- "Semantic links":[
- {
- "Sample ID":"PrL-5",
- "Primary region":"Prelimbic area"
- },
- {
- "Sample ID":"M-5",
- "Primary region":"Primary motor area"
- },
- {
- "Sample ID":"S-6",
- "Primary region":"Primary somatosensory area"
- },
- {
- "Sample ID":"V-5",
- "Primary region":"Anteromedial visual area"
- }
- ]
-}
\ No newline at end of file
diff --git a/src/res/raw/allenFromCamila/hbp-00648_AFmr1_150519.json b/src/res/raw/allenFromCamila/hbp-00648_AFmr1_150519.json
deleted file mode 100644
index c3ed767b8c722714d58c4f601e6e82008b510e3f..0000000000000000000000000000000000000000
--- a/src/res/raw/allenFromCamila/hbp-00648_AFmr1_150519.json
+++ /dev/null
@@ -1,23 +0,0 @@
-{
- "Reference_atlas":"CCF v3",
- "Name":"hbp-00648_AFmr1_150519",
- "HBP_storage_path":"bp00sp03/Sanchez_SGA1_T3.2.3/hbp-00648/",
- "Semantic links":[
- {
- "Sample ID":"PrL-6",
- "Primary region":"Prelimbic area"
- },
- {
- "Sample ID":"M-6",
- "Primary region":"Primary motor area"
- },
- {
- "Sample ID":"S-6",
- "Primary region":"Primary somatosensory area"
- },
- {
- "Sample ID":"V-6",
- "Primary region":"Anteromedial visual area"
- }
- ]
-}
\ No newline at end of file
diff --git a/src/res/raw/allenFromCamila/hbp-00810_VC-ramp.json b/src/res/raw/allenFromCamila/hbp-00810_VC-ramp.json
deleted file mode 100644
index 45c482e7eefb8aef36f5790ddb1b01c5cb5e7296..0000000000000000000000000000000000000000
--- a/src/res/raw/allenFromCamila/hbp-00810_VC-ramp.json
+++ /dev/null
@@ -1,6 +0,0 @@
-{
- "Reference_atlas":"CCF v3",
- "Name":"hbp-00810_VC-ramp",
- "HBP_storage_path":"bp00sp01/Angelo_SGA1_1.2.4/hbp-00810/",
- "Primary region":"Vermal regions"
-}
\ No newline at end of file
diff --git a/src/res/raw/allenFromCamila/readme.md b/src/res/raw/allenFromCamila/readme.md
deleted file mode 100644
index 7db64a02aec6e4cbb4ba8825d7313cc6957eb9a4..0000000000000000000000000000000000000000
--- a/src/res/raw/allenFromCamila/readme.md
+++ /dev/null
@@ -1,14 +0,0 @@
-hbp-[0-9]{5}\_(\s*?:ProjectID)\_(\s*?:SubjectID)
-
-for eg:
-150519 - Subject/6dc041463d5e021652824319d0273289
-VC-ramp ?
-GCaMP6 ?
-hbp-00028 ?
-GAD67 ?
-sIPSCs ?
-APD14 ?
-APD13 ?
-APD12 ?
-Tg2576 ?
-hbp-00005 ?
\ No newline at end of file
diff --git a/src/res/raw/allenMouse.json b/src/res/raw/allenMouse.json
deleted file mode 100644
index 86180f34e45fcdbfa13cca580a8d8aaad24a13c2..0000000000000000000000000000000000000000
--- a/src/res/raw/allenMouse.json
+++ /dev/null
@@ -1 +0,0 @@
-{"name":"Allen Mouse","type":"template","species":"Mouse","ngId":"","useTheme":"dark","nehubaConfigURL":"res/json/allenMouseNehubaConfig.json","parcellations":[{"ngId":"atlas","name":"Allen Mouse Brain Atlas","ngData":null,"type":"parcellation","regions":[{"name":"Basic cell groups and regions","labelIndex":8,"rgb":[191,218,227],"children":[{"name":"Cerebrum","labelIndex":567,"rgb":[176,240,255],"children":[{"name":"Cerebral cortex","labelIndex":688,"rgb":[176,255,184],"children":[{"name":"Cortical plate","labelIndex":695,"rgb":[112,255,112],"children":[{"name":"Isocortex","labelIndex":315,"rgb":[112,255,113],"children":[{"name":"Frontal pole, cerebral cortex","labelIndex":184,"rgb":[38,143,69],"children":[{"name":"Frontal pole, layer 1","labelIndex":68,"rgb":[38,143,69],"children":[],"ontologyMetadata":{"id":68,"atlas_id":998,"ontology_id":1,"acronym":"FRP1","name":"Frontal pole, layer 1","color_hex_triplet":"268F45","graph_order":7,"st_level":null,"hemisphere_id":3,"parent_structure_id":184}},{"name":"Frontal pole, layer 2/3","labelIndex":667,"rgb":[38,143,69],"children":[],"ontologyMetadata":{"id":667,"atlas_id":1073,"ontology_id":1,"acronym":"FRP2/3","name":"Frontal pole, layer 2/3","color_hex_triplet":"268F45","graph_order":8,"st_level":null,"hemisphere_id":3,"parent_structure_id":184}},{"name":"Frontal pole, layer 5","labelIndex":526157192,"rgb":[38,143,69],"children":[],"ontologyMetadata":{"id":526157192,"atlas_id":null,"ontology_id":1,"acronym":"FRP5","name":"Frontal pole, layer 5","color_hex_triplet":"268F45","graph_order":9,"st_level":null,"hemisphere_id":3,"parent_structure_id":184}},{"name":"Frontal pole, layer 6a","labelIndex":526157196,"rgb":[38,143,69],"children":[],"ontologyMetadata":{"id":526157196,"atlas_id":null,"ontology_id":1,"acronym":"FRP6a","name":"Frontal pole, layer 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fissure","labelIndex":11,"rgb":[170,170,170],"children":[],"ontologyMetadata":{"id":11,"atlas_id":708,"ontology_id":1,"acronym":"plf","name":"posterolateral fissure","color_hex_triplet":"AAAAAA","graph_order":1300,"st_level":null,"hemisphere_id":3,"parent_structure_id":1040}},{"name":"nodular fissure","labelIndex":18,"rgb":[170,170,170],"children":[],"ontologyMetadata":{"id":18,"atlas_id":709,"ontology_id":1,"acronym":"nf","name":"nodular fissure","color_hex_triplet":"AAAAAA","graph_order":1301,"st_level":null,"hemisphere_id":3,"parent_structure_id":1040}},{"name":"simple fissure","labelIndex":25,"rgb":[170,170,170],"children":[],"ontologyMetadata":{"id":25,"atlas_id":710,"ontology_id":1,"acronym":"sif","name":"simple fissure","color_hex_triplet":"AAAAAA","graph_order":1302,"st_level":null,"hemisphere_id":3,"parent_structure_id":1040}},{"name":"intercrural fissure","labelIndex":34,"rgb":[170,170,170],"children":[],"ontologyMetadata":{"id":34,"atlas_id":711,"ontology_id":1,"acronym":"icf","name":"intercrural fissure","color_hex_triplet":"AAAAAA","graph_order":1303,"st_level":null,"hemisphere_id":3,"parent_structure_id":1040}},{"name":"ansoparamedian fissure","labelIndex":43,"rgb":[170,170,170],"children":[],"ontologyMetadata":{"id":43,"atlas_id":712,"ontology_id":1,"acronym":"apf","name":"ansoparamedian fissure","color_hex_triplet":"AAAAAA","graph_order":1304,"st_level":null,"hemisphere_id":3,"parent_structure_id":1040}},{"name":"intraparafloccular fissure","labelIndex":49,"rgb":[170,170,170],"children":[],"ontologyMetadata":{"id":49,"atlas_id":713,"ontology_id":1,"acronym":"ipf","name":"intraparafloccular fissure","color_hex_triplet":"AAAAAA","graph_order":1305,"st_level":null,"hemisphere_id":3,"parent_structure_id":1040}},{"name":"paramedian sulcus","labelIndex":57,"rgb":[170,170,170],"children":[],"ontologyMetadata":{"id":57,"atlas_id":714,"ontology_id":1,"acronym":"pms","name":"paramedian sulcus","color_hex_triplet":"AAAAAA","graph_order":1306,"st_level":null,"hemisphere_id":3,"parent_structure_id":1040}},{"name":"parafloccular sulcus","labelIndex":65,"rgb":[170,170,170],"children":[],"ontologyMetadata":{"id":65,"atlas_id":715,"ontology_id":1,"acronym":"pfs","name":"parafloccular sulcus","color_hex_triplet":"AAAAAA","graph_order":1307,"st_level":null,"hemisphere_id":3,"parent_structure_id":1040}}],"ontologyMetadata":{"id":1040,"atlas_id":695,"ontology_id":1,"acronym":"grv of CBX","name":"grooves of the cerebellar cortex","color_hex_triplet":"AAAAAA","graph_order":1293,"st_level":null,"hemisphere_id":3,"parent_structure_id":1024}},{"name":"Interpeduncular fossa","labelIndex":624,"rgb":[170,170,170],"children":[],"ontologyMetadata":{"id":624,"atlas_id":926,"ontology_id":1,"acronym":"IPF","name":"Interpeduncular fossa","color_hex_triplet":"AAAAAA","graph_order":1308,"st_level":null,"hemisphere_id":3,"parent_structure_id":1024}}],"ontologyMetadata":{"id":1024,"atlas_id":693,"ontology_id":1,"acronym":"grv","name":"grooves","color_hex_triplet":"AAAAAA","graph_order":1287,"st_level":null,"hemisphere_id":3,"parent_structure_id":997}},{"name":"retina","labelIndex":304325711,"rgb":[127,46,126],"children":[],"ontologyMetadata":{"id":304325711,"atlas_id":null,"ontology_id":1,"acronym":"retina","name":"retina","color_hex_triplet":"7F2E7E","graph_order":1309,"st_level":null,"hemisphere_id":3,"parent_structure_id":997}}]}],"properties":{"name":"Allen Mouse Brain Atlas","description":"The Allen Mouse Brain Atlas includes a full-color, high-resolution anatomical reference atlas accompanied by a systematic, hierarchically organized taxonomy of mouse brain structures. Anatomical annotations in classical histological atlas plates were extracted to create a comprehensive volumetric reference atlas of the mouse brain."}}
\ No newline at end of file
diff --git a/src/res/raw/allenMouseNewNoCenters.txt b/src/res/raw/allenMouseNewNoCenters.txt
deleted file mode 100644
index a178c2ac0f7d855f762be9d159463648ef90ad1e..0000000000000000000000000000000000000000
--- a/src/res/raw/allenMouseNewNoCenters.txt
+++ /dev/null
@@ -1,487 +0,0 @@
-Somatomotor areas, Layer 1
-Somatomotor areas, Layer 2/3
-Somatomotor areas, Layer 5
-Somatomotor areas, Layer 6a
-Somatomotor areas, Layer 6b
-Somatosensory areas, layer 1
-Somatosensory areas, layer 2/3
-Somatosensory areas, layer 4
-Somatosensory areas, layer 5
-Somatosensory areas, layer 6a
-Somatosensory areas, layer 6b
-Primary somatosensory area, layer 1
-Primary somatosensory area, layer 2/3
-Primary somatosensory area, layer 4
-Primary somatosensory area, layer 5
-Primary somatosensory area, layer 6a
-Primary somatosensory area, layer 6b
-Rostrolateral lateral visual area
-Rostrolateral lateral visual area, layer 1
-Rostrolateral lateral visual area, layer 2/3
-Rostrolateral lateral visual area, layer 4
-Rostrolateral lateral visual area,layer 5
-Rostrolateral lateral visual area, layer 6a
-Rostrolateral lateral visual area, layer 6b
-Laterolateral anterior visual area
-Laterolateral anterior visual area, layer 1
-Laterolateral anterior visual area, layer 2/3
-Laterolateral anterior visual area, layer 4
-Laterolateral anterior visual area,layer 5
-Laterolateral anterior visual area, layer 6a
-Laterolateral anterior visual area, layer 6b
-Visual areas, layer 1
-Visual areas, layer 2/3
-Visual areas, layer 4
-Visual areas, layer 5
-Visual areas, layer 6a
-Visual areas, layer 6b
-Anterior cingulate area, layer 1
-Anterior cingulate area, layer 2/3
-Anterior cingulate area, layer 5
-Anterior cingulate area, layer 6a
-Anterior cingulate area, layer 6b
-Prelimbic area, layer 2
-Infralimbic area, layer 2
-Orbital area, layer 1
-Orbital area, layer 2/3
-Orbital area, layer 5
-Orbital area, layer 6a
-Orbital area, layer 6b
-Orbital area, medial part, layer 2
-Orbital area, ventral part
-Mediomedial anterior visual area
-Mediomedial anterior visual area, layer 1
-Mediomedial anterior visual area, layer 2/3
-Mediomedial anterior visual area, layer 4
-Mediomedial anterior visual area,layer 5
-Mediomedial anterior visual area, layer 6a
-Mediomedial anterior visual area, layer 6b
-Mediomedial posterior visual area
-Mediomedial posterior visual area, layer 1
-Mediomedial posterior visual area, layer 2/3
-Mediomedial posterior visual area, layer 4
-Mediomedial posterior visual area,layer 5
-Mediomedial posterior visual area, layer 6a
-Mediomedial posterior visual area, layer 6b
-Medial visual area
-Medial visual area, layer 1
-Medial visual area, layer 2/3
-Medial visual area, layer 4
-Medial visual area,layer 5
-Medial visual area, layer 6a
-Medial visual area, layer 6b
-Retrosplenial area, ventral part, layer 2
-Posterior parietal association areas, layer 1
-Posterior parietal association areas, layer 2/3
-Posterior parietal association areas, layer 4
-Posterior parietal association areas, layer 5
-Posterior parietal association areas, layer 6a
-Posterior parietal association areas, layer 6b
-Main olfactory bulb, glomerular layer
-Main olfactory bulb, granule layer
-Main olfactory bulb, inner plexiform layer
-Main olfactory bulb, mitral layer
-Main olfactory bulb, outer plexiform layer
-Anterior olfactory nucleus, dorsal part
-Anterior olfactory nucleus, external part
-Anterior olfactory nucleus, lateral part
-Anterior olfactory nucleus, medial part
-Anterior olfactory nucleus, posteroventral part
-Anterior olfactory nucleus, layer 1
-Anterior olfactory nucleus, layer 2
-Taenia tecta, dorsal part, layers 1-4
-Taenia tecta, dorsal part, layer 1
-Taenia tecta, dorsal part, layer 2
-Taenia tecta, dorsal part, layer 3
-Taenia tecta, dorsal part, layer 4
-Taenia tecta, ventral part, layers 1-3
-Taenia tecta, ventral part, layer 1
-Taenia tecta, ventral part, layer 2
-Taenia tecta, ventral part, layer 3
-Dorsal peduncular area, layer 1
-Dorsal peduncular area, layer 2
-Dorsal peduncular area, layer 2/3
-Dorsal peduncular area, layer 5
-Dorsal peduncular area, layer 6a
-Piriform area, layers 1-3
-Piriform area, molecular layer
-Piriform area, pyramidal layer
-Piriform area, polymorph layer
-Nucleus of the lateral olfactory tract, layers 1-3
-Cortical amygdalar area, anterior part, layer 1
-Cortical amygdalar area, anterior part, layer 2
-Cortical amygdalar area, anterior part, layer 3
-Cortical amygdalar area, posterior part, lateral zone, layers 1-2
-Cortical amygdalar area, posterior part, lateral zone, layers 1-3
-Cortical amygdalar area, posterior part, lateral zone, layer 1
-Cortical amygdalar area, posterior part, lateral zone, layer 2
-Cortical amygdalar area, posterior part, lateral zone, layer 3
-Cortical amygdalar area, posterior part, medial zone, layers 1-2
-Cortical amygdalar area, posterior part, medial zone, layers 1-3
-Cortical amygdalar area, posterior part, medial zone, layer 1
-Cortical amygdalar area, posterior part, medial zone, layer 2
-Cortical amygdalar area, posterior part, medial zone, layer 3
-Piriform-amygdalar area, layers 1-3
-Piriform-amygdalar area, molecular layer
-Piriform-amygdalar area, pyramidal layer
-Piriform-amygdalar area, polymorph layer
-Postpiriform transition area, layers 1-3
-Postpiriform transition area, layers 1
-Postpiriform transition area, layers 2
-Postpiriform transition area, layers 3
-Field CA1, stratum lacunosum-moleculare
-Field CA1, stratum oriens
-Field CA1, pyramidal layer
-Field CA1, stratum radiatum
-Field CA2, stratum lacunosum-moleculare
-Field CA2, stratum oriens
-Field CA2, pyramidal layer
-Field CA2, stratum radiatum
-Field CA3, stratum lacunosum-moleculare
-Field CA3, stratum lucidum
-Field CA3, stratum oriens
-Field CA3, pyramidal layer
-Field CA3, stratum radiatum
-Dentate gyrus, subgranular zone
-Dentate gyrus crest
-Dentate gyrus crest, molecular layer
-Dentate gyrus crest, polymorph layer
-Dentate gyrus crest, granule cell layer
-Dentate gyrus lateral blade
-Dentate gyrus lateral blade, molecular layer
-Dentate gyrus lateral blade, polymorph layer
-Dentate gyrus lateral blade, granule cell layer
-Dentate gyrus medial blade
-Dentate gyrus medial blade, molecular layer
-Dentate gyrus medial blade, polymorph layer
-Dentate gyrus medial blade, granule cell layer
-Entorhinal area, lateral part, layer 2/3
-Entorhinal area, lateral part, layer 2a
-Entorhinal area, lateral part, layer 2b
-Entorhinal area, lateral part, layer 4
-Entorhinal area, lateral part, layer 4/5
-Entorhinal area, lateral part, layer 5/6
-Entorhinal area, lateral part, layer 6b
-Entorhinal area, medial part, dorsal zone, layer 2a
-Entorhinal area, medial part, dorsal zone, layer 2b
-Entorhinal area, medial part, dorsal zone, layer 4
-Entorhinal area, medial part, dorsal zone, layer 5/6
-Entorhinal area, medial part, ventral zone
-Entorhinal area, medial part, ventral zone, layer 1
-Entorhinal area, medial part, ventral zone, layer 2
-Entorhinal area, medial part, ventral zone, layer 3
-Entorhinal area, medial part, ventral zone, layer 4
-Entorhinal area, medial part, ventral zone, layer 5/6
-Parasubiculum, layer 1
-Parasubiculum, layer 2
-Parasubiculum, layer 3
-Postsubiculum, layer 1
-Postsubiculum, layer 2
-Postsubiculum, layer 3
-Presubiculum, layer 1
-Presubiculum, layer 2
-Presubiculum, layer 3
-Subiculum, dorsal part
-Subiculum, dorsal part, molecular layer
-Subiculum, dorsal part, pyramidal layer
-Subiculum, dorsal part, stratum radiatum
-Subiculum, ventral part
-Subiculum, ventral part, molecular layer
-Subiculum, ventral part, pyramidal layer
-Subiculum, ventral part, stratum radiatum
-Prosubiculum, dorsal part
-Prosubiculum, dorsal part, molecular layer
-Prosubiculum, dorsal part, pyramidal layer
-Prosubiculum, dorsal part, stratum radiatum
-Prosubiculum, ventral part
-Prosubiculum, ventral part, molecular layer
-Prosubiculum, ventral part, pyramidal layer
-Prosubiculum, ventral part, stratum radiatum
-Layer 6b, isocortex
-Islands of Calleja
-Major island of Calleja
-Olfactory tubercle, layers 1-3
-Olfactory tubercle, molecular layer
-Olfactory tubercle, pyramidal layer
-Olfactory tubercle, polymorph layer
-Lateral strip of striatum
-Medial amygdalar nucleus, anterodorsal part
-Medial amygdalar nucleus, anteroventral part
-Medial amygdalar nucleus, posterodorsal part
-Medial amygdalar nucleus, posterodorsal part, sublayer a
-Medial amygdalar nucleus, posterodorsal part, sublayer b
-Medial amygdalar nucleus, posterodorsal part, sublayer c
-Medial amygdalar nucleus, posteroventral part
-Bed nuclei of the stria terminalis, anterior division
-Bed nuclei of the stria terminalis, anterior division, anterolateral area
-Bed nuclei of the stria terminalis, anterior division, anteromedial area
-Bed nuclei of the stria terminalis, anterior division, dorsomedial nucleus
-Bed nuclei of the stria terminalis, anterior division, fusiform nucleus
-Bed nuclei of the stria terminalis, anterior division, juxtacapsular nucleus
-Bed nuclei of the stria terminalis, anterior division, magnocellular nucleus
-Bed nuclei of the stria terminalis, anterior division, oval nucleus
-Bed nuclei of the stria terminalis, anterior division, rhomboid nucleus
-Bed nuclei of the stria terminalis, anterior division, ventral nucleus
-Bed nuclei of the stria terminalis, posterior division
-Bed nuclei of the stria terminalis, posterior division, dorsal nucleus
-Bed nuclei of the stria terminalis, posterior division, principal nucleus
-Bed nuclei of the stria terminalis, posterior division, interfascicular nucleus
-Bed nuclei of the stria terminalis, posterior division, transverse nucleus
-Bed nuclei of the stria terminalis, posterior division, strial extension
-Retroethmoid nucleus
-Mediodorsal nucleus of the thalamus, central part
-Mediodorsal nucleus of the thalamus, lateral part
-Mediodorsal nucleus of the thalamus, medial part
-Ventral part of the lateral geniculate complex, lateral zone
-Ventral part of the lateral geniculate complex, medial zone
-Pineal body
-Nucleus circularis
-Paraventricular hypothalamic nucleus, magnocellular division
-Paraventricular hypothalamic nucleus, magnocellular division, anterior magnocellular part
-Paraventricular hypothalamic nucleus, magnocellular division, medial magnocellular part
-Paraventricular hypothalamic nucleus, magnocellular division, posterior magnocellular part
-Paraventricular hypothalamic nucleus, magnocellular division, posterior magnocellular part, lateral zone
-Paraventricular hypothalamic nucleus, magnocellular division, posterior magnocellular part, medial zone
-Paraventricular hypothalamic nucleus, parvicellular division
-Paraventricular hypothalamic nucleus, parvicellular division, anterior parvicellular part
-Paraventricular hypothalamic nucleus, parvicellular division, medial parvicellular part, dorsal zone
-Paraventricular hypothalamic nucleus, parvicellular division, periventricular part
-Anterior hypothalamic area
-Dorsomedial nucleus of the hypothalamus, anterior part
-Dorsomedial nucleus of the hypothalamus, posterior part
-Dorsomedial nucleus of the hypothalamus, ventral part
-Suprachiasmatic preoptic nucleus
-Anterior hypothalamic nucleus, anterior part
-Anterior hypothalamic nucleus, central part
-Anterior hypothalamic nucleus, dorsal part
-Anterior hypothalamic nucleus, posterior part
-Supramammillary nucleus, lateral part
-Supramammillary nucleus, medial part
-Medial preoptic nucleus, central part
-Medial preoptic nucleus, lateral part
-Medial preoptic nucleus, medial part
-Paraventricular hypothalamic nucleus, descending division, dorsal parvicellular part
-Paraventricular hypothalamic nucleus, descending division, forniceal part
-Paraventricular hypothalamic nucleus, descending division, lateral parvicellular part
-Paraventricular hypothalamic nucleus, descending division, medial parvicellular part, ventral zone
-Ventromedial hypothalamic nucleus, anterior part
-Ventromedial hypothalamic nucleus, central part
-Ventromedial hypothalamic nucleus, dorsomedial part
-Ventromedial hypothalamic nucleus, ventrolateral part
-Dopaminergic A13 group
-Midbrain reticular nucleus, magnocellular part
-Midbrain reticular nucleus, magnocellular part, general
-Midbrain reticular nucleus, parvicellular part
-Superior colliculus, motor related, intermediate gray layer, sublayer a
-Superior colliculus, motor related, intermediate gray layer, sublayer b
-Superior colliculus, motor related, intermediate gray layer, sublayer c
-Intercollicular nucleus
-Substantia nigra, lateral part
-Nucleus of the lateral lemniscus, dorsal part
-Nucleus of the lateral lemniscus, horizontal part
-Nucleus of the lateral lemniscus, ventral part
-Parabrachial nucleus, lateral division
-Parabrachial nucleus, lateral division, central lateral part
-Parabrachial nucleus, lateral division, dorsal lateral part
-Parabrachial nucleus, lateral division, external lateral part
-Parabrachial nucleus, lateral division, superior lateral part
-Parabrachial nucleus, lateral division, ventral lateral part
-Parabrachial nucleus, medial division
-Parabrachial nucleus, medial division, external medial part
-Parabrachial nucleus, medial division, medial medial part
-Parabrachial nucleus, medial division, ventral medial part
-Lateral tegmental nucleus
-Pontine reticular nucleus, ventral part
-Superior salivatory nucleus
-Superior central nucleus raphe, lateral part
-Superior central nucleus raphe, medial part
-Granular lamina of the cochlear nuclei
-Cochlear nucleus, subpedunclular granular region
-Nucleus of the solitary tract, central part
-Nucleus of the solitary tract, commissural part
-Nucleus of the solitary tract, gelatinous part
-Nucleus of the solitary tract, lateral part
-Nucleus of the solitary tract, medial part
-Spinal nucleus of the trigeminal, oral part, caudal dorsomedial part
-Spinal nucleus of the trigeminal, oral part, middle dorsomedial part, dorsal zone
-Spinal nucleus of the trigeminal, oral part, middle dorsomedial part, ventral zone
-Spinal nucleus of the trigeminal, oral part, rostral dorsomedial part
-Spinal nucleus of the trigeminal, oral part, ventrolateral part
-Nucleus z
-Accessory abducens nucleus
-Efferent vestibular nucleus
-Efferent cochlear group
-Nucleus intercalatus
-Paramedian reticular nucleus
-Parapyramidal nucleus, deep part
-Parapyramidal nucleus, superficial part
-Interstitial nucleus of the vestibular nerve
-Lingula (I), molecular layer
-Lingula (I), Purkinje layer
-Lingula (I), granular layer
-Lobule II, molecular layer
-Lobule II, Purkinje layer
-Lobule II, granular layer
-Lobule III, molecular layer
-Lobule III, Purkinje layer
-Lobule III, granular layer
-Lobule IV
-Lobule IV, molecular layer
-Lobule IV, Purkinje layer
-Lobule IV, granular layer
-Lobule V
-Lobule V, molecular layer
-Lobule V, Purkinje layer
-Lobule V, granular layer
-Lobules IV-V, molecular layer
-Lobules IV-V, Purkinje layer
-Lobules IV-V, granular layer
-Declive (VI), molecular layer
-Declive (VI), Purkinje layer
-Declive (VI), granular layer
-Folium-tuber vermis (VII), molecular layer
-Folium-tuber vermis (VII), Purkinje layer
-Folium-tuber vermis (VII), granular layer
-Pyramus (VIII), molecular layer
-Pyramus (VIII), Purkinje layer
-Pyramus (VIII), granular layer
-Uvula (IX), molecular layer
-Uvula (IX), Purkinje layer
-Uvula (IX), granular layer
-Nodulus (X), molecular layer
-Nodulus (X), Purkinje layer
-Nodulus (X), granular layer
-Simple lobule, molecular layer
-Simple lobule, Purkinje layer
-Simple lobule, granular layer
-Crus 1, molecular layer
-Crus 1, Purkinje layer
-Crus 1, granular layer
-Crus 2, molecular layer
-Crus 2, Purkinje layer
-Crus 2, granular layer
-Paramedian lobule, molecular layer
-Paramedian lobule, Purkinje layer
-Paramedian lobule, granular layer
-Copula pyramidis, molecular layer
-Copula pyramidis, Purkinje layer
-Copula pyramidis, granular layer
-Paraflocculus, molecular layer
-Paraflocculus, Purkinje layer
-Paraflocculus, granular layer
-Flocculus, molecular layer
-Flocculus, Purkinje layer
-Flocculus, granular layer
-Cerebellar cortex, molecular layer
-Cerebellar cortex, Purkinje layer
-Cerebellar cortex, granular layer
-terminal nerve
-accessory olfactory tract
-accessory optic tract
-tectothalamic pathway
-trochlear nerve decussation
-abducens nerve
-midbrain tract of the trigeminal nerve
-intermediate nerve
-efferent cochleovestibular bundle
-intermediate acoustic stria
-glossopharyngeal nerve
-accessory spinal nerve
-hypoglossal nerve
-ventral roots
-dorsolateral fascicle
-dorsal commissure of the spinal cord
-ventral commissure of the spinal cord
-fasciculus proprius
-gracile fascicle
-internal arcuate fibers
-spinothalamic tract
-lateral spinothalamic tract
-ventral spinothalamic tract
-spinocervical tract
-spino-olivary pathway
-spinoreticular pathway
-spinovestibular pathway
-spinotectal pathway
-spinohypothalamic pathway
-spinotelenchephalic pathway
-hypothalamohypophysial tract
-spinocerebellar tract
-cuneocerebellar tract
-juxtarestiform body
-bulbocerebellar tract
-olivocerebellar tract
-reticulocerebellar tract
-trigeminocerebellar tract
-corpus callosum, rostrum
-corticotectal tract
-corticorubral tract
-corticopontine tract
-corticobulbar tract
-corticospinal tract, crossed
-corticospinal tract, uncrossed
-internal medullary lamina of the thalamus
-middle thalamic commissure
-thalamic peduncles
-pallidothalamic pathway
-nigrothalamic fibers
-pallidotegmental fascicle
-striatonigral pathway
-subthalamic fascicle
-rubroreticular tract
-central tegmental bundle
-retriculospinal tract
-retriculospinal tract, lateral part
-retriculospinal tract, medial part
-vestibulospinal pathway
-ansa peduncularis
-precommissural fornix, general
-precommissural fornix diagonal band
-perforant path
-angular path
-longitudinal association bundle
-ventrolateral hypothalamic tract
-preoptic commissure
-supraoptic commissures, anterior
-supraoptic commissures, dorsal
-supraoptic commissures, ventral
-premammillary commissure
-supramammillary decussation
-propriohypothalamic pathways
-propriohypothalamic pathways, dorsal
-propriohypothalamic pathways, lateral
-propriohypothalamic pathways, medial
-propriohypothalamic pathways, ventral
-periventricular bundle of the hypothalamus
-dorsal thalamus related
-periventricular bundle of the thalamus
-pineal stalk
-midbrain related
-dorsal longitudinal fascicle
-dorsal tegmental tract
-rhinocele
-choroid fissure
-interventricular foramen
-grooves
-grooves of the cerebral cortex
-endorhinal groove
-hippocampal fissure
-rhinal fissure
-rhinal incisure
-grooves of the cerebellar cortex
-precentral fissure
-preculminate fissure
-primary fissure
-posterior superior fissure
-prepyramidal fissure
-secondary fissure
-posterolateral fissure
-nodular fissure
-simple fissure
-intercrural fissure
-ansoparamedian fissure
-intraparafloccular fissure
-paramedian sulcus
-parafloccular sulcus
-Interpeduncular fossa
-retina
\ No newline at end of file
diff --git a/src/res/raw/allenMouseNewUnused.txt b/src/res/raw/allenMouseNewUnused.txt
deleted file mode 100644
index 471e75a0dc635ef280d7adadc1ad2b9e206f7986..0000000000000000000000000000000000000000
--- a/src/res/raw/allenMouseNewUnused.txt
+++ /dev/null
@@ -1,18 +0,0 @@
-root
-Medial mammillary nucleus, lateral part
-Medial mammillary nucleus, medial part
-Medial mammillary nucleus, posterior part
-Medial mammillary nucleus, dorsal part
-Subcommissural organ
-Paranigral nucleus
-Supraoculomotor periaqueductal gray
-Paratrochlear nucleus
-Interpeduncular nucleus, rostral
-Interpeduncular nucleus, caudal
-Interpeduncular nucleus, apical
-Interpeduncular nucleus, lateral
-Interpeduncular nucleus, intermediate
-Interpeduncular nucleus, dorsomedial
-Interpeduncular nucleus, dorsolateral
-Interpeduncular nucleus, rostrolateral
-Posterodorsal tegmental nucleus
\ No newline at end of file
diff --git a/src/res/raw/allenTestAggregated.json b/src/res/raw/allenTestAggregated.json
deleted file mode 100644
index 1198dcdd0dc68d62af53af22d0e03d1537e0b384..0000000000000000000000000000000000000000
--- a/src/res/raw/allenTestAggregated.json
+++ /dev/null
@@ -1,319 +0,0 @@
-[
- {
- "type": "Allen Dataset",
- "name": "hbp-00005",
- "regionName": [
- {
- "regionName": "Hippocampal region",
- "relationship": "equals"
- }
- ],
- "targetParcellation": "Allen Mouse Brain Atlas",
- "files": [
- {
- "filename": "hbp-00005",
- "name": "hbp-00005",
- "mimetype": "raw"
- }
- ],
- "kgID": "Project/e4da3b7fbbce2345d7772b0674a318d5"
- },
- {
- "type": "Allen Dataset",
- "name": "hbp-00011_Tg2576",
- "regionName": [
- {
- "regionName": "Field CA1",
- "relationship": "equals"
- }
- ],
- "targetParcellation": "Allen Mouse Brain Atlas",
- "files": [
- {
- "filename": "hbp-00011_Tg2576",
- "name": "hbp-00011_Tg2576",
- "mimetype": "raw"
- }
- ],
- "kgID": "Project/6512bd43d9caa6e02c990b0a82652dca"
- },
- {
- "type": "Allen Dataset",
- "name": "hbp-00012_APD12",
- "regionName": [
- {
- "regionName": "Field CA1",
- "relationship": "equals"
- }
- ],
- "targetParcellation": "Allen Mouse Brain Atlas",
- "files": [
- {
- "filename": "hbp-00012_APD12",
- "name": "hbp-00012_APD12",
- "mimetype": "raw"
- }
- ],
- "kgID": "Project/c20ad4d76fe97759aa27a0c99bff6710"
- },
- {
- "type": "Allen Dataset",
- "name": "hbp-00013_APD13",
- "regionName": [
- {
- "regionName": "Field CA1",
- "relationship": "equals"
- }
- ],
- "targetParcellation": "Allen Mouse Brain Atlas",
- "files": [
- {
- "filename": "hbp-00013_APD13",
- "name": "hbp-00013_APD13",
- "mimetype": "raw"
- }
- ],
- "kgID": "Project/c51ce410c124a10e0db5e4b97fc2af39"
- },
- {
- "type": "Allen Dataset",
- "name": "hbp-00014_APD14",
- "regionName": [
- {
- "regionName": "Field CA1",
- "relationship": "equals"
- }
- ],
- "targetParcellation": "Allen Mouse Brain Atlas",
- "files": [
- {
- "filename": "hbp-00014_APD14",
- "name": "hbp-00014_APD14",
- "mimetype": "raw"
- }
- ],
- "kgID": "Project/aab3238922bcc25a6f606eb525ffdc56"
- },
- {
- "type": "Allen Dataset",
- "name": "hbp-00015_sIPSCs",
- "regionName": [
- {
- "regionName": "Field CA1",
- "relationship": "equals"
- }
- ],
- "targetParcellation": "Allen Mouse Brain Atlas",
- "files": [
- {
- "filename": "hbp-00015_sIPSCs",
- "name": "hbp-00015_sIPSCs",
- "mimetype": "raw"
- }
- ],
- "kgID": "Project/9bf31c7ff062936a96d3c8bd1f8f2ff3"
- },
- {
- "type": "Allen Dataset",
- "name": "hbp-00023_GAD67",
- "regionName": [],
- "targetParcellation": "Allen Mouse Brain Atlas",
- "files": [
- {
- "filename": "hbp-00023_GAD67",
- "name": "hbp-00023_GAD67",
- "mimetype": "raw"
- }
- ]
- },
- {
- "type": "Allen Dataset",
- "name": "hbp-00028",
- "regionName": [],
- "targetParcellation": "Allen Mouse Brain Atlas",
- "files": [
- {
- "filename": "hbp-00028",
- "name": "hbp-00028",
- "mimetype": "raw"
- }
- ]
- },
- {
- "type": "Allen Dataset",
- "name": "hbp-00552_GCaMP6.json",
- "regionName": [],
- "targetParcellation": "Allen Mouse Brain Atlas",
- "files": [
- {
- "filename": "hbp-00552_GCaMP6.json",
- "name": "hbp-00552_GCaMP6.json",
- "mimetype": "raw"
- }
- ],
- "kgID": null
- },
- {
- "type": "Allen Dataset",
- "name": "hbp-00648_AFmr1_140213",
- "regionName": [
- {
- "regionName": "Prelimbic area",
- "relationship": "equals"
- },
- {
- "regionName": "Primary motor area",
- "relationship": "equals"
- },
- {
- "regionName": "Primary somatosensory area",
- "relationship": "equals"
- },
- {
- "regionName": "Anteromedial visual area",
- "relationship": "equals"
- }
- ],
- "targetParcellation": "Allen Mouse Brain Atlas",
- "files": [
- {
- "filename": "hbp-00648_AFmr1_140213",
- "name": "hbp-00648_AFmr1_140213",
- "mimetype": "raw"
- }
- ],
- "kgID": "Subject/9703f44d9e8e3e89b04fe32df38d3a50"
- },
- {
- "type": "Allen Dataset",
- "name": "hbp-00648_AFmr1_140220",
- "regionName": [
- {
- "regionName": "Prelimbic area",
- "relationship": "equals"
- },
- {
- "regionName": "Primary motor area",
- "relationship": "equals"
- },
- {
- "regionName": "Primary somatosensory area",
- "relationship": "equals"
- },
- {
- "regionName": "Anteromedial visual area",
- "relationship": "equals"
- }
- ],
- "targetParcellation": "Allen Mouse Brain Atlas",
- "files": [
- {
- "filename": "hbp-00648_AFmr1_140220",
- "name": "hbp-00648_AFmr1_140220",
- "mimetype": "raw"
- }
- ],
- "kgID": "Subject/62a12ea44022cc61bc50622c25d9ba90"
- },
- {
- "type": "Allen Dataset",
- "name": "hbp-00648_AFmr1_140304",
- "regionName": [
- {
- "regionName": "Prelimbic area",
- "relationship": "equals"
- },
- {
- "regionName": "Primary motor area",
- "relationship": "equals"
- },
- {
- "regionName": "Primary somatosensory area",
- "relationship": "equals"
- },
- {
- "regionName": "Anteromedial visual area",
- "relationship": "equals"
- }
- ],
- "targetParcellation": "Allen Mouse Brain Atlas",
- "files": [
- {
- "filename": "hbp-00648_AFmr1_140304",
- "name": "hbp-00648_AFmr1_140304",
- "mimetype": "raw"
- }
- ],
- "kgID": "Subject/b7a9bfa817b00f0b8602eef0961dd9c1"
- },
- {
- "type": "Allen Dataset",
- "name": "hbp-00648_AFmr1_140514",
- "regionName": [
- {
- "regionName": "Prelimbic area",
- "relationship": "equals"
- },
- {
- "regionName": "Primary motor area",
- "relationship": "equals"
- },
- {
- "regionName": "Primary somatosensory area",
- "relationship": "equals"
- },
- {
- "regionName": "Anteromedial visual area",
- "relationship": "equals"
- }
- ],
- "targetParcellation": "Allen Mouse Brain Atlas",
- "files": [
- {
- "filename": "hbp-00648_AFmr1_140514",
- "name": "hbp-00648_AFmr1_140514",
- "mimetype": "raw"
- }
- ],
- "kgID": "Subject/6d212b1a18a6f09098123aeff7ee540e"
- },
- {
- "type": "Allen Dataset",
- "name": "hbp-00648_AFmr1_150505",
- "regionName": [],
- "targetParcellation": "Allen Mouse Brain Atlas",
- "files": [
- {
- "filename": "hbp-00648_AFmr1_150505",
- "name": "hbp-00648_AFmr1_150505",
- "mimetype": "raw"
- }
- ]
- },
- {
- "type": "Allen Dataset",
- "name": "hbp-00648_AFmr1_150519",
- "regionName": [],
- "targetParcellation": "Allen Mouse Brain Atlas",
- "files": [
- {
- "filename": "hbp-00648_AFmr1_150519",
- "name": "hbp-00648_AFmr1_150519",
- "mimetype": "raw"
- }
- ]
- },
- {
- "type": "Allen Dataset",
- "name": "hbp-00810_VC-ramp",
- "regionName": [],
- "targetParcellation": "Allen Mouse Brain Atlas",
- "files": [
- {
- "filename": "hbp-00810_VC-ramp",
- "name": "hbp-00810_VC-ramp",
- "mimetype": "raw"
- }
- ]
- }
-]
\ No newline at end of file
diff --git a/src/res/raw/colin.json b/src/res/raw/colin.json
deleted file mode 100644
index 9ed5a1ceda375167670c1355bcf05feee7ba441d..0000000000000000000000000000000000000000
--- a/src/res/raw/colin.json
+++ /dev/null
@@ -1,2492 +0,0 @@
-{
- "name": "MNI Colin 27",
- "type": "template",
- "species": "Human",
- "useTheme": "dark",
- "ngId": "colin",
- "nehubaConfigURL": "res/json/colinNehubaConfig.json",
- "parcellations": [
- {
- "ngId": "atlas",
- "type": "parcellation",
- "surfaceParcellation": true,
- "ngData": null,
- "name": "JuBrain Cytoarchitectonic Atlas",
- "regions": [
- {
- "name": "JuBrain",
- "labelIndex": null,
- "rgb": null,
- "children": [
- {
- "name": "telencephalon",
- "labelIndex": null,
- "rgb": null,
- "children": [
- {
- "name": "cerebral cortex",
- "labelIndex": null,
- "rgb": null,
- "children": [
- {
- "name": "parietal lobe",
- "labelIndex": null,
- "rgb": null,
- "children": [
- {
- "name": "intraparietal sulcus",
- "labelIndex": null,
- "rgb": null,
- "children": [
- {
- "name": "Area hIP1 (IPS)",
- "labelIndex": 128,
- "rgb": [
- 85,
- 107,
- 47
- ],
- "children": [],
- "ontologyMetadata": {
- "value": "JBA:128",
- "_Id": 128,
- "_index-v22c": 20,
- "full name": "human intraparietal area 1",
- "name": "Area hIP1 (IPS)",
- "acronym": "hIP1",
- "brodmann": "unknown",
- "functionality": "multimodal association"
- },
- "PMapURL": "https://neuroglancer-dev.humanbrainproject.org/precomputed/JuBrain/v2.2c/PMaps/AIPS_IP1.nii",
- "position": [
- -37300000,
- -54400000,
- 44900000
- ]
- },
- {
- "name": "Area hIP2 (IPS)",
- "labelIndex": 129,
- "rgb": [
- 148,
- 0,
- 211
- ],
- "children": [],
- "ontologyMetadata": {
- "value": "JBA:129",
- "_Id": 129,
- "_index-v22c": 81,
- "full name": "human intraparietal area 2",
- "name": "Area hIP2 (IPS)",
- "acronym": "hIP2",
- "brodmann": "unknown",
- "functionality": "multimodal association"
- },
- "PMapURL": "https://neuroglancer-dev.humanbrainproject.org/precomputed/JuBrain/v2.2c/PMaps/AIPS_IP2.nii",
- "position": [
- -46600000,
- -47100000,
- 48200000
- ]
- },
- {
- "name": "Area hIP3 (IPS)",
- "labelIndex": 133,
- "rgb": [
- 238,
- 232,
- 170
- ],
- "children": [],
- "ontologyMetadata": {
- "value": "JBA:133",
- "_Id": 133,
- "_index-v22c": 37,
- "full name": "human intraparietal area 3",
- "name": "Area hIP3 (IPS)",
- "acronym": "hIP3",
- "brodmann": "unknown",
- "functionality": "multimodal association"
- },
- "PMapURL": "https://neuroglancer-dev.humanbrainproject.org/precomputed/JuBrain/v2.2c/PMaps/AIPS_IP3.nii",
- "position": [
- -32500000,
- -59200000,
- 50500000
- ]
- }
- ],
- "ontologyMetadata": {
- "value": "JBA",
- "name": "intraparietal sulcus",
- "acronym": "IPS"
- },
- "PMapURL": null,
- "position": null
- },
- {
- "name": "inferior parietal lobule",
- "labelIndex": null,
- "rgb": null,
- "children": [
- {
- "name": "Area PF (IPL)",
- "labelIndex": 206,
- "rgb": [
- 239,
- 134,
- 0
- ],
- "children": [],
- "ontologyMetadata": {
- "value": "JBA:206",
- "_Id": 206,
- "_index-v22c": 23,
- "full name": "parietal area PF",
- "name": "Area PF (IPL)",
- "acronym": "PF",
- "brodmann": "40",
- "functionality": "multimodal association"
- },
- "PMapURL": "https://neuroglancer-dev.humanbrainproject.org/precomputed/JuBrain/v2.2c/PMaps/IPL_PF.nii",
- "position": [
- -58500000,
- -43100000,
- 41100000
- ]
- },
- {
- "name": "Area PFcm (IPL)",
- "labelIndex": 113,
- "rgb": [
- 144,
- 238,
- 144
- ],
- "children": [],
- "ontologyMetadata": {
- "value": "JBA:113",
- "_Id": 113,
- "_index-v22c": 34,
- "full name": "parietal area PF, columnata magnocellularis",
- "name": "Area PFcm (IPL)",
- "acronym": "PFcm (IPL)",
- "brodmann": "40",
- "functionality": "multimodal association"
- },
- "PMapURL": "https://neuroglancer-dev.humanbrainproject.org/precomputed/JuBrain/v2.2c/PMaps/IPL_PFcm.nii",
- "position": [
- -51400000,
- -41600000,
- 25800000
- ]
- },
- {
- "name": "Area PFm (IPL)",
- "labelIndex": 112,
- "rgb": [
- 238,
- 238,
- 14
- ],
- "children": [],
- "ontologyMetadata": {
- "value": "JBA:112",
- "_Id": 112,
- "_index-v22c": 18,
- "full name": "parietal area PF magnocellularis",
- "name": "Area PFm (IPL)",
- "acronym": "PFm",
- "brodmann": "40",
- "functionality": "multimodal association"
- },
- "PMapURL": "https://neuroglancer-dev.humanbrainproject.org/precomputed/JuBrain/v2.2c/PMaps/IPL_PFm.nii",
- "receptorData": "PFm",
- "position": [
- -54400000,
- -56500000,
- 41600000
- ]
- },
- {
- "name": "Area PFop (IPL)",
- "labelIndex": 111,
- "rgb": [
- 144,
- 238,
- 144
- ],
- "children": [],
- "ontologyMetadata": {
- "value": "JBA:111",
- "_Id": 111,
- "_index-v22c": 16,
- "full name": "parietal area PF opercular",
- "name": "Area PFop (IPL)",
- "acronym": "PFop",
- "brodmann": "40",
- "functionality": "multimodal association"
- },
- "PMapURL": "https://neuroglancer-dev.humanbrainproject.org/precomputed/JuBrain/v2.2c/PMaps/IPL_PFop.nii",
- "position": [
- -59900000,
- -29900000,
- 28400000
- ]
- },
- {
- "name": "Area PFt (IPL)",
- "labelIndex": 109,
- "rgb": [
- 144,
- 238,
- 144
- ],
- "children": [],
- "ontologyMetadata": {
- "value": "JBA:109",
- "_Id": 109,
- "_index-v22c": 90,
- "full name": "parietal area PF tenuicorticalis",
- "name": "Area PFt (IPL)",
- "acronym": "PFt",
- "brodmann": "40",
- "functionality": "multimodal association"
- },
- "PMapURL": "https://neuroglancer-dev.humanbrainproject.org/precomputed/JuBrain/v2.2c/PMaps/IPL_PFt.nii",
- "position": [
- -54500000,
- -32500000,
- 42400000
- ]
- },
- {
- "name": "Area PGa (IPL)",
- "labelIndex": 110,
- "rgb": [
- 5,
- 198,
- 198
- ],
- "children": [],
- "ontologyMetadata": {
- "value": "JBA:110",
- "_Id": 110,
- "_index-v22c": 65,
- "full name": "parietal area PG anterior",
- "name": "Area PGa (IPL)",
- "acronym": "PGa",
- "brodmann": "39",
- "functionality": "multimodal association"
- },
- "PMapURL": "https://neuroglancer-dev.humanbrainproject.org/precomputed/JuBrain/v2.2c/PMaps/IPL_PGa.nii",
- "position": [
- -47600000,
- -65400000.00000001,
- 41600000
- ]
- },
- {
- "name": "Area PGp (IPL)",
- "labelIndex": 108,
- "rgb": [
- 42,
- 60,
- 252
- ],
- "children": [],
- "ontologyMetadata": {
- "value": "JBA:108",
- "_Id": 108,
- "_index-v22c": 63,
- "full name": "parietal area PG posterior",
- "name": "Area PGp (IPL)",
- "acronym": "PGp",
- "brodmann": "39",
- "functionality": "multimodal association"
- },
- "PMapURL": "https://neuroglancer-dev.humanbrainproject.org/precomputed/JuBrain/v2.2c/PMaps/IPL_PGp.nii",
- "position": [
- -44000000,
- -77900000,
- 33000000
- ]
- }
- ],
- "ontologyMetadata": {
- "value": "JBA",
- "name": "inferior parietal lobule",
- "acronym": "IPL"
- },
- "PMapURL": null,
- "position": null
- },
- {
- "name": "parietal operculum",
- "labelIndex": null,
- "rgb": null,
- "children": [
- {
- "name": "Area OP1 (POperc)",
- "labelIndex": 73,
- "rgb": [
- 255,
- 200,
- 100
- ],
- "children": [],
- "ontologyMetadata": {
- "value": "JBA:73",
- "_Id": 73,
- "_index-v22c": 14,
- "full name": "opercular area 1 (parietal)",
- "name": "Area OP1 (POperc)",
- "acronym": "OP1",
- "brodmann": "43",
- "functionality": "secondary somatosensory"
- },
- "PMapURL": "https://neuroglancer-dev.humanbrainproject.org/precomputed/JuBrain/v2.2c/PMaps/Operculum_OP1.nii",
- "position": [
- -51600000,
- -27400000,
- 21000000
- ]
- },
- {
- "name": "Area OP2 (POperc)",
- "labelIndex": 74,
- "rgb": [
- 255,
- 200,
- 100
- ],
- "children": [],
- "ontologyMetadata": {
- "value": "JBA:74",
- "_Id": 74,
- "_index-v22c": 25,
- "full name": "opercular area 2 (parietal)",
- "name": "Area OP2 (POperc)",
- "acronym": "OP2 (POperc)",
- "brodmann": "43",
- "functionality": "secondary somatosensory"
- },
- "PMapURL": "https://neuroglancer-dev.humanbrainproject.org/precomputed/JuBrain/v2.2c/PMaps/Operculum_OP2.nii",
- "position": [
- -36000000,
- -28500000,
- 22700000
- ]
- },
- {
- "name": "Area OP3 (POperc)",
- "labelIndex": 75,
- "rgb": [
- 255,
- 200,
- 100
- ],
- "children": [],
- "ontologyMetadata": {
- "value": "JBA:75",
- "_Id": 75,
- "_index-v22c": 30,
- "full name": "opercular area 3 (parietal)",
- "name": "Area OP3 (POperc)",
- "acronym": "OP3",
- "brodmann": "43",
- "functionality": "secondary somatosensory"
- },
- "PMapURL": "https://neuroglancer-dev.humanbrainproject.org/precomputed/JuBrain/v2.2c/PMaps/Operculum_OP3.nii",
- "position": [
- -40200000,
- -18300000,
- 20700000
- ]
- },
- {
- "name": "Area OP4 (POperc)",
- "labelIndex": 72,
- "rgb": [
- 255,
- 200,
- 100
- ],
- "children": [],
- "ontologyMetadata": {
- "value": "JBA:72",
- "_Id": 72,
- "_index-v22c": 47,
- "full name": "opercular area 4 (parietal)",
- "name": "Area OP4 (POperc)",
- "acronym": "OP4",
- "brodmann": "43",
- "functionality": "secondary somatosensory"
- },
- "PMapURL": "https://neuroglancer-dev.humanbrainproject.org/precomputed/JuBrain/v2.2c/PMaps/Operculum_OP4.nii",
- "position": [
- -59300000,
- -15600000,
- 19100000
- ]
- }
- ],
- "ontologyMetadata": {
- "value": "JBA",
- "name": "parietal operculum",
- "acronym": "POperc"
- },
- "PMapURL": null,
- "position": null
- },
- {
- "name": "postcentral gyrus",
- "labelIndex": null,
- "rgb": null,
- "children": [
- {
- "name": "Area 1 (PostCG)",
- "labelIndex": 125,
- "rgb": [
- 0,
- 255,
- 127
- ],
- "children": [],
- "ontologyMetadata": {
- "value": "JBA:125",
- "_Id": 125,
- "_index-v22c": 4,
- "full name": "area 1",
- "name": "Area 1 (PostCG)",
- "acronym": "1",
- "brodmann": "1",
- "functionality": "primary somatosensory"
- },
- "PMapURL": "https://neuroglancer-dev.humanbrainproject.org/precomputed/JuBrain/v2.2c/PMaps/PSC_1.nii",
- "position": [
- -46800000,
- -32400000,
- 60700000
- ]
- },
- {
- "name": "Area 2 (PostCG)",
- "labelIndex": 252,
- "rgb": [
- 19,
- 255,
- 80
- ],
- "children": [],
- "ontologyMetadata": {
- "value": "JBA:252",
- "_Id": 252,
- "_index-v22c": 92,
- "full name": "area 2",
- "name": "Area 2 (PostCG)",
- "acronym": "2",
- "brodmann": "2",
- "functionality": "primary somatosensory"
- },
- "PMapURL": "https://neuroglancer-dev.humanbrainproject.org/precomputed/JuBrain/v2.2c/PMaps/PSC_2.nii",
- "position": [
- -40700000,
- -39100000,
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diff --git a/src/res/raw/hip1.json b/src/res/raw/hip1.json
deleted file mode 100644
index eb839689ecb3f40ccd0584c6238260369e0afc94..0000000000000000000000000000000000000000
--- a/src/res/raw/hip1.json
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