From 7031a090cfd7a3776366c85ee69ba98e964a07ed Mon Sep 17 00:00:00 2001
From: Xiao Gui <xgui3783@gmail.com>
Date: Fri, 12 Feb 2021 17:10:33 +0100
Subject: [PATCH] chore: start to use hash rather than query param
---
deploy/app.js | 5 +-
deploy/bkwdCompat/index.js | 9 +
deploy/bkwdCompat/ngLinks.json | 705 ++++++++++++++++++
deploy/bkwdCompat/urlState.js | 160 ++++
deploy/bkwdCompat/urlState.spec.js | 18 +
docs/releases/v2.4.0.md | 3 +-
package.json | 1 +
.../atlasViewer.history.service.spec.ts | 125 ----
.../atlasViewer.history.service.ts | 147 ----
src/atlasViewer/atlasViewer.urlUtil.spec.ts | 337 ---------
src/atlasViewer/atlasViewer.urlUtil.ts | 437 -----------
src/main.module.ts | 4 +-
src/routerModule/cipher.spec.ts | 130 ++++
src/routerModule/cipher.ts | 99 +++
src/routerModule/index.ts | 1 +
src/routerModule/module.ts | 30 +
src/routerModule/router.service.spec.ts | 265 +++++++
src/routerModule/router.service.ts | 127 ++++
src/routerModule/util.ts | 396 ++++++++++
src/services/state/viewerState/selectors.ts | 5 +
src/state/stateAggregator.directive.ts | 22 +-
21 files changed, 1963 insertions(+), 1063 deletions(-)
create mode 100644 deploy/bkwdCompat/index.js
create mode 100644 deploy/bkwdCompat/ngLinks.json
create mode 100644 deploy/bkwdCompat/urlState.js
create mode 100644 deploy/bkwdCompat/urlState.spec.js
delete mode 100644 src/atlasViewer/atlasViewer.history.service.spec.ts
delete mode 100644 src/atlasViewer/atlasViewer.history.service.ts
delete mode 100644 src/atlasViewer/atlasViewer.urlUtil.spec.ts
delete mode 100644 src/atlasViewer/atlasViewer.urlUtil.ts
create mode 100644 src/routerModule/cipher.spec.ts
create mode 100644 src/routerModule/cipher.ts
create mode 100644 src/routerModule/index.ts
create mode 100644 src/routerModule/module.ts
create mode 100644 src/routerModule/router.service.spec.ts
create mode 100644 src/routerModule/router.service.ts
create mode 100644 src/routerModule/util.ts
diff --git a/deploy/app.js b/deploy/app.js
index ebfa19165..0d237b64d 100644
--- a/deploy/app.js
+++ b/deploy/app.js
@@ -5,6 +5,7 @@ const app = express.Router()
const session = require('express-session')
const crypto = require('crypto')
const cookieParser = require('cookie-parser')
+const bkwdMdl = require('./bkwdCompat')()
const { router: regionalFeaturesRouter, regionalFeatureIsReady } = require('./regionalFeatures')
const { router: datasetRouter, ready: datasetRouteIsReady } = require('./datasets')
@@ -141,7 +142,7 @@ if (LOCAL_CDN_FLAG) {
indexFile = data.replace(regex, LOCAL_CDN)
})
- app.get('/', (_req, res) => {
+ app.get('/', bkwdMdl, (_req, res) => {
if (!indexFile) return res.status(404).end()
res.setHeader('Content-Type', 'text/html; charset=utf-8')
return res.status(200).send(indexFile)
@@ -163,7 +164,7 @@ app.use(require('./devBanner'))
* populate nonce token
*/
const { indexTemplate } = require('./constants')
-app.get('/', cookieParser(), (req, res) => {
+app.get('/', bkwdMdl, cookieParser(), (req, res) => {
const iavError = req.cookies && req.cookies['iav-error']
res.setHeader('Content-Type', 'text/html')
diff --git a/deploy/bkwdCompat/index.js b/deploy/bkwdCompat/index.js
new file mode 100644
index 000000000..9488a8a33
--- /dev/null
+++ b/deploy/bkwdCompat/index.js
@@ -0,0 +1,9 @@
+module.exports = () =>{
+ const urlState = require('./urlState')
+ return (req, res, next) => {
+ const query = req.query || {}
+ const redir = urlState(query)
+ if (redir) return res.redirect(redir)
+ next()
+ }
+}
diff --git a/deploy/bkwdCompat/ngLinks.json b/deploy/bkwdCompat/ngLinks.json
new file mode 100644
index 000000000..68909f4cd
--- /dev/null
+++ b/deploy/bkwdCompat/ngLinks.json
@@ -0,0 +1,705 @@
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+ "templateSelected=MNI+152+ICBM+2009c+Nonlinear+Asymmetric&parcellationSelected=Cytoarchitectonic+Maps+-+v2.5.1&cRegionsSelected=%7B%22MNI152_V25_LEFT_NG_SPLIT_HEMISPHERE%22%3A%221y%22%7D&cNavigation=0.0.0.-W000..2_ZG29.-ASCS.2-8jM2._aAY3..DMVW..1I-0R%7E.22bix.1CyL8%7E..45jd",
+ "templateSelected=MNI+152+ICBM+2009c+Nonlinear+Asymmetric&parcellationSelected=Cytoarchitectonic+maps+-+v1.18&cRegionsSelected=%7B%22jubrain+mni152+v18+right%22%3A%223j%22%7D&cNavigation=0.0.0.-W000..2_ZG29.-ASCS.2-8jM2._aAY3..BSR0..2HFZe.2r028%7E.2aZzK..45jd",
+ "templateSelected=MNI+152+ICBM+2009c+Nonlinear+Asymmetric&parcellationSelected=Cytoarchitectonic+Maps+-+v2.5.1&cRegionsSelected=%7B%22MNI152_V25_LEFT_NG_SPLIT_HEMISPHERE%22%3A%221d%22%7D&cNavigation=0.0.0.-W000..2_ZG29.-ASCS.2-8jM2._aAY3..DMVW..QaW_%7E.27wgv.sU35%7E..45jd",
+ "templateSelected=Big+Brain+%28Histology%29&parcellationSelected=Cytoarchitectonic+Maps®ionsSelected=interpolated%2322&navigation=0_0_0_1__0.3140767216682434_-0.7418519854545593_0.4988985061645508_-0.3195493221282959__1922235.5293810747__-9349145.390744817_27783956.655307576_38734626.88870795__295893.7198067633",
+ "templateSelected=MNI+152+ICBM+2009c+Nonlinear+Asymmetric&parcellationSelected=Fibre%20Bundle%20Atlas%20-%20Short%20Bundle&navigation=0_0_0_1__-0.2753947079181671_0.6631333827972412_-0.6360703706741333_0.2825356423854828__3000000__-26408504.835110337_-10505207.041904286_54935159.93057278__484084&niftiLayers=https%3A%2F%2Fneuroglancer.humanbrainproject.org%2Fprecomputed%2FFiber_Bundle%2FSWM_atlas%2Fleft-hemisphere%2FProbability_Maps%2Flh_PrC-SF_0.nii",
+ "templateSelected=MNI+152+ICBM+2009c+Nonlinear+Asymmetric&parcellationSelected=Fibre%20Bundle%20Atlas%20-%20Long%20Bundle&navigation=0_0_0_1__-0.2753947079181671_0.6631333827972412_-0.6360703706741333_0.2825356423854828__3000000__-39192168.637784176_-42631349.96016914_-8671180.832158834__484084&niftiLayers=https%3A%2F%2Fneuroglancer.humanbrainproject.org%2Fprecomputed%2FFiber_Bundle%2FDWM_atlas%2Fleft-hemisphere%2FProbability_Maps%2FInferiorLongitudinal_Left.nii",
+ "templateSelected=MNI+Colin+27&parcellationSelected=Cytoarchitectonic+Maps+-+v1.18&cRegionsSelected=%7B%22jubrain+colin+v18+right%22%3A%227%22%7D&cNavigation=0.0.0.-W000..2_ZG29.-ASCS.2-8jM2._aAY3..BSR0..6-m.1wA7O%7E.irG..3q90",
+ "templateSelected=MNI+Colin+27&parcellationSelected=Cytoarchitectonic+Maps+-+v1.18&cRegionsSelected=%7B%22jubrain+colin+v18+right%22%3A%229%22%7D&cNavigation=0.0.0.-W000..2_ZG29.-ASCS.2-8jM2._aAY3..BSR0..ANz8%7E.1xd2G%7E.Ao-c..3q90",
+ "templateSelected=MNI+152+ICBM+2009c+Nonlinear+Asymmetric&parcellationSelected=Short+Fiber+Bundles+-+HCP",
+ "templateSelected=MNI+152+ICBM+2009c+Nonlinear+Asymmetric&parcellationSelected=Cytoarchitectonic+maps+-+v1.18&cRegionsSelected=%7B%22jubrain+mni152+v18+left%22%3A%224%22%7D&cNavigation=0.0.0.-W000..2_ZG29.-ASCS.2-8jM2._aAY3..BSR0..1MGE.26Pd8%7E.4sKo%7E..3q90",
+ "templateSelected=MNI+152+ICBM+2009c+Nonlinear+Asymmetric&parcellationSelected=Cytoarchitectonic+maps+-+v1.18&cRegionsSelected=%7B%22jubrain+mni152+v18+right%22%3A%223h%22%7D&cNavigation=0.0.0.-W000..2_ZG29.-ASCS.2-8jM2._aAY3..BSR0..2HKgC.2qwM4%7E.2adEi..45jd",
+ "templateSelected=MNI+Colin+27&parcellationSelected=Cytoarchitectonic+Maps+-+v1.18&cRegionsSelected=%7B%22jubrain+colin+v18+left%22%3A%224W%22%7D&cNavigation=0.0.0.-W000..2_ZG29.-ASCS.2-8jM2._aAY3..BSR0..4kK.1w7yK%7E.Q9b..3q90",
+ "templateSelected=MNI+Colin+27&parcellationSelected=Cytoarchitectonic+Maps+-+v1.18&cRegionsSelected=%7B%22jubrain+colin+v18+right%22%3A%2226%22%7D&cNavigation=0.0.0.-W000..2_ZG29.-ASCS.2-8jM2._aAY3..BSR0..5ND.1w8WG%7E.Ukc..3q90",
+ "templateSelected=MNI+152+ICBM+2009c+Nonlinear+Asymmetric&parcellationSelected=Cytoarchitectonic+maps+-+v1.18&cRegionsSelected=%7B%22jubrain+mni152+v18+right%22%3A%223G%22%7D&cNavigation=0.0.0.-W000..2_ZG29.-ASCS.2-8jM2._aAY3..BSR0..1TEZ.26PB0%7E.4SUu%7E..3q90",
+ "templateSelected=MNI+Colin+27&parcellationSelected=Cytoarchitectonic+Maps+-+v1.18&cRegionsSelected=%7B%22jubrain+colin+v18+left%22%3A%225%22%7D&cNavigation=0.0.0.-W000..2_ZG29.-ASCS.2-8jM2._aAY3..BSR0..ud.1w58e%7E.4E8..3q90",
+ "templateSelected=Big+Brain+%28Histology%29&parcellationSelected=Cytoarchitectonic+Maps&cRegionsSelected=%7B%22v5%22%3A%221%22%7D&cNavigation=0.0.0.-W000..-GHSG.2_0PIA.zn_OK.2-8mTZ..7LIx..r15q%7E.2X38a%7E.Gx92%7E..jZZ",
+ "templateSelected=MNI+152+ICBM+2009c+Nonlinear+Asymmetric&parcellationSelected=Cytoarchitectonic+maps+-+v1.18&cRegionsSelected=%7B%22jubrain+mni152+v18+right%22%3A%223l%22%7D&cNavigation=0.0.0.-W000..2_ZG29.-ASCS.2-8jM2._aAY3..BSR0..1US2.26O_W%7E.4Mco%7E..3q90",
+ "templateSelected=MNI+152+ICBM+2009c+Nonlinear+Asymmetric&parcellationSelected=Fibre%20Bundle%20Atlas%20-%20Long%20Bundle&navigation=0_0_0_1__-0.2753947079181671_0.6631333827972412_-0.6360703706741333_0.2825356423854828__3000000__39308927.09196353_-22777996.40983154_32738193.869096935__484084&niftiLayers=https%3A%2F%2Fneuroglancer.humanbrainproject.org%2Fprecomputed%2FFiber_Bundle%2FDWM_atlas%2Fright-hemisphere%2FProbability_Maps%2FArcuate_Anterior_Right.nii",
+ "templateSelected=MNI+152+ICBM+2009c+Nonlinear+Asymmetric&parcellationSelected=Cytoarchitectonic+maps+-+v1.18&cRegionsSelected=%7B%22jubrain+mni152+v18+right%22%3A%2227%22%7D&cNavigation=0.0.0.-W000..2_ZG29.-ASCS.2-8jM2._aAY3..BSR0..1SpG.26PE8%7E.4UQK%7E..3q90",
+ "templateSelected=MNI+152+ICBM+2009c+Nonlinear+Asymmetric&parcellationSelected=Fibre%20Bundle%20Atlas%20-%20Short%20Bundle&navigation=0_0_0_1__-0.2753947079181671_0.6631333827972412_-0.6360703706741333_0.2825356423854828__3000000__30727572.31783229_7292200.659099221_-24747345.294763826__484084&niftiLayers=https%3A%2F%2Fneuroglancer.humanbrainproject.org%2Fprecomputed%2FFiber_Bundle%2FSWM_atlas%2Fright-hemisphere%2FProbability_Maps%2Frh_LOF-ST_0.nii",
+ "templateSelected=MNI+152+ICBM+2009c+Nonlinear+Asymmetric&parcellationSelected=Fibre%20Bundle%20Atlas%20-%20Long%20Bundle&navigation=0_0_0_1__-0.2753947079181671_0.6631333827972412_-0.6360703706741333_0.2825356423854828__3000000__-20803546.879296124_-36580285.94995877_-10145861.974154532__484084&niftiLayers=https%3A%2F%2Fneuroglancer.humanbrainproject.org%2Fprecomputed%2FFiber_Bundle%2FDWM_atlas%2Fleft-hemisphere%2FProbability_Maps%2FCingulum_Temporal_Left.nii",
+ "templateSelected=MNI+Colin+27&parcellationSelected=Cytoarchitectonic+Maps+-+v1.18&cRegionsSelected=%7B%22jubrain+colin+v18+right%22%3A%223k%22%7D&cNavigation=0.0.0.-W000..2_ZG29.-ASCS.2-8jM2._aAY3..BSR0..6mG.1w9sC%7E.gS4..3q90",
+ "templateSelected=MNI+152+ICBM+2009c+Nonlinear+Asymmetric&parcellationSelected=JuBrain+Cytoarchitectonic+Atlas&navigation=0_0_0_1__-0.2753947079181671_0.6631333827972412_-0.6360703706741333_0.2825356423854828__3000000__38875694.35035902_22074041.45779705_32925552.093212306__1071975.4977029096&niftiLayers=https%3A%2F%2Fneuroglancer.humanbrainproject.eu%2Fprecomputed%2FJuBrain%2F17%2Ficbm152casym%2Fpmaps%2FIFS_ifs3_r_N10_nlin2MNI152ASYM2009C_2.2_publicDOI_e664da66c465b00af07d0d53e6300b17.nii.gz",
+ "templateSelected=MNI+Colin+27&parcellationSelected=Cytoarchitectonic+Maps+-+v1.18&cRegionsSelected=%7B%22jubrain+colin+v18+right%22%3A%222-%22%7D&cNavigation=0.0.0.-W000..2_ZG29.-ASCS.2-8jM2._aAY3..BSR0..Bh0m%7E.nyLe.hCkC%7E..45jd",
+ "templateSelected=MNI+152+ICBM+2009c+Nonlinear+Asymmetric&parcellationSelected=Cytoarchitectonic+maps+-+v1.18&cRegionsSelected=%7B%22jubrain+mni152+v18+left%22%3A%225%22%7D&cNavigation=0.0.0.-W000..2_ZG29.-ASCS.2-8jM2._aAY3..BSR0..1MqM.26Pd8%7E.4qaI%7E..3q90",
+ "templateSelected=MNI+152+ICBM+2009c+Nonlinear+Asymmetric&parcellationSelected=Cytoarchitectonic+maps+-+v1.18&cRegionsSelected=%7B%22jubrain+mni152+v18+right%22%3A%2230%22%7D&cNavigation=0.0.0.-W000..2_ZG29.-ASCS.2-8jM2._aAY3..BSR0..E2CO%7E.nnMW.kRQK%7E..45jd",
+ "templateSelected=MNI+Colin+27&parcellationSelected=Cytoarchitectonic+Maps+-+v1.18&cRegionsSelected=%7B%22jubrain+colin+v18+right%22%3A%22k%22%7D&cNavigation=0.0.0.-W000..2_ZG29.-ASCS.2-8jM2._aAY3..BSR0..BzuQ%7E.o3_i.h4BK%7E..45jd",
+ "templateSelected=MNI+Colin+27&parcellationSelected=Cytoarchitectonic+Maps+-+v1.18&cRegionsSelected=%7B%22jubrain+colin+v18+left%22%3A%221p%22%7D&cNavigation=0.0.0.-W000..2_ZG29.-ASCS.2-8jM2._aAY3..DMVW..ZNsu%7E.l1JK.aGyo%7E..2Ul9",
+ "templateSelected=MNI+Colin+27&parcellationSelected=Cytoarchitectonic+Maps+-+v1.18&cRegionsSelected=%7B%22jubrain+colin+v18+right%22%3A%223e%22%7D&cNavigation=0.0.0.-W000..2_ZG29.-ASCS.2-8jM2._aAY3..BSR0..CFOu%7E.oAn4.gxpO%7E..45jd",
+ "templateSelected=MNI+Colin+27&parcellationSelected=Cytoarchitectonic+Maps+-+v1.18&cRegionsSelected=%7B%22jubrain+colin+v18+right%22%3A%224c%22%7D&cNavigation=0.0.0.-W000..2_ZG29.-ASCS.2-8jM2._aAY3..BSR0..2Yr.1w6Je%7E.CqH..3q90",
+ "templateSelected=MNI+152+ICBM+2009c+Nonlinear+Asymmetric&parcellationSelected=Fibre%20Bundle%20Atlas%20-%20Long%20Bundle&navigation=0_0_0_1__-0.2753947079181671_0.6631333827972412_-0.6360703706741333_0.2825356423854828__3000000__-29901044.899648257_15264845.851438016_-17445944.547899857__484084&niftiLayers=https%3A%2F%2Fneuroglancer.humanbrainproject.org%2Fprecomputed%2FFiber_Bundle%2FDWM_atlas%2Fleft-hemisphere%2FProbability_Maps%2FUncinate_Left.nii",
+ "templateSelected=MNI+152+ICBM+2009c+Nonlinear+Asymmetric&parcellationSelected=Cytoarchitectonic+maps+-+v1.18&cRegionsSelected=%7B%22jubrain+mni152+v18+right%22%3A%221q%22%7D&cNavigation=0.0.0.-W000..2_ZG29.-ASCS.2-8jM2._aAY3..DMVW..YPRG%7E.jAnO.sg_O%7E..2Ul9",
+ "templateSelected=Big+Brain+%28Histology%29&parcellationSelected=Cytoarchitectonic+Maps&navigation=0_0_0_1__0.7989629507064819_0.09687352180480957_-0.0713578313589096_-0.5892213582992554__1922235.5293810747__311768_-54882876_4142912__350000®ionsSelected=v2%231",
+ "templateSelected=MNI+152+ICBM+2009c+Nonlinear+Asymmetric&parcellationSelected=Fibre%20Bundle%20Atlas%20-%20Short%20Bundle&navigation=0_0_0_1__-0.2753947079181671_0.6631333827972412_-0.6360703706741333_0.2825356423854828__3000000__-40639583.333333336_-76233333.33333334_-11417708.333333336__484084&niftiLayers=https%3A%2F%2Fneuroglancer.humanbrainproject.org%2Fprecomputed%2FFiber_Bundle%2FSWM_atlas%2Fleft-hemisphere%2FProbability_Maps%2Flh_Fu-LO_0.nii",
+ "templateSelected=MNI+152+ICBM+2009c+Nonlinear+Asymmetric&parcellationSelected=Cytoarchitectonic+maps+-+v1.18&cRegionsSelected=%7B%22jubrain+mni152+v18+right%22%3A%22z%22%7D&cNavigation=0.0.0.-W000..2_ZG29.-ASCS.2-8jM2._aAY3..BSR0..EEyo%7E.nsUe.kLoy%7E..45jd",
+ "templateSelected=MNI+152+ICBM+2009c+Nonlinear+Asymmetric&parcellationSelected=Cytoarchitectonic+maps+-+v1.18&cRegionsSelected=%7B%22jubrain+mni152+v18+right%22%3A%224F%22%7D&cNavigation=0.0.0.-W000..2_ZG29.-ASCS.2-8jM2._aAY3..DMVW..2HRjm.2qnDi%7E.2aiDS..45jd",
+ "templateSelected=MNI+152+ICBM+2009c+Nonlinear+Asymmetric&parcellationSelected=Cytoarchitectonic+maps+-+v1.18&cRegionsSelected=%7B%22jubrain+mni152+v18+right%22%3A%223%22%7D&cNavigation=0.0.0.-W000..2_ZG29.-ASCS.2-8jM2._aAY3..BSR0..1MGE.26Pd8%7E.4sKo%7E..3q90",
+ "templateSelected=Big+Brain+%28Histology%29&parcellationSelected=Cytoarchitectonic+Maps&cRegionsSelected=%7B%22v3v%22%3A%221%22%7D&cNavigation=0.0.0.-W000..-DAqw.2_PGSc._ShZn.2-8GXE..7LIx..Echz.3Dv8q%7E.7gwp%7E..jZZ"
+]
diff --git a/deploy/bkwdCompat/urlState.js b/deploy/bkwdCompat/urlState.js
new file mode 100644
index 000000000..881e79cb6
--- /dev/null
+++ b/deploy/bkwdCompat/urlState.js
@@ -0,0 +1,160 @@
+// this module is suppose to rewrite state stored in query param
+// and convert it to path based url
+
+const waxolmObj = {
+ aId: 'minds/core/parcellationatlas/v1.0.0/522b368e-49a3-49fa-88d3-0870a307974a',
+ id: 'minds/core/referencespace/v1.0.0/d5717c4a-0fa1-46e6-918c-b8003069ade8',
+ parc: {
+ 'Waxholm Space rat brain atlas v3': {
+ id: 'minds/core/parcellationatlas/v1.0.0/ebb923ba-b4d5-4b82-8088-fa9215c2e1fe'
+ },
+ 'Whole Brain (v2.0)': {
+ id: 'minds/core/parcellationatlas/v1.0.0/2449a7f0-6dd0-4b5a-8f1e-aec0db03679d'
+ },
+ 'Waxholm Space rat brain atlas v2': {
+ id: 'minds/core/parcellationatlas/v1.0.0/2449a7f0-6dd0-4b5a-8f1e-aec0db03679d'
+ },
+ 'Waxholm Space rat brain atlas v1': {
+ id: 'minds/core/parcellationatlas/v1.0.0/11017b35-7056-4593-baad-3934d211daba'
+ },
+ }
+}
+
+const allenObj = {
+ aId: 'juelich/iav/atlas/v1.0.0/2',
+ id: 'minds/core/referencespace/v1.0.0/265d32a0-3d84-40a5-926f-bf89f68212b9',
+ parc: {
+ 'Allen Mouse Common Coordinate Framework v3 2017': {
+ id: 'minds/core/parcellationatlas/v1.0.0/05655b58-3b6f-49db-b285-64b5a0276f83'
+ },
+ 'Allen Mouse Brain Atlas': {
+ id: 'minds/core/parcellationatlas/v1.0.0/39a1384b-8413-4d27-af8d-22432225401f'
+ },
+ 'Allen Mouse Common Coordinate Framework v3 2015': {
+ id: 'minds/core/parcellationatlas/v1.0.0/39a1384b-8413-4d27-af8d-22432225401f'
+ },
+ }
+}
+
+const templateMap = {
+ 'Big Brain (Histology)': {
+ aId: 'juelich/iav/atlas/v1.0.0/1',
+ id: 'minds/core/referencespace/v1.0.0/a1655b99-82f1-420f-a3c2-fe80fd4c8588',
+ parc: {
+ 'Cytoarchitectonic Maps - v2.4': {
+ id: 'juelich/iav/atlas/v1.0.0/7'
+ },
+ 'Cortical Layers Segmentation': {
+ id: 'juelich/iav/atlas/v1.0.0/3'
+ },
+ 'Grey/White matter': {
+ id: 'juelich/iav/atlas/v1.0.0/4'
+ }
+ }
+ },
+ 'MNI 152 ICBM 2009c Nonlinear Asymmetric': {
+ aId: 'juelich/iav/atlas/v1.0.0/1',
+ id: 'minds/core/referencespace/v1.0.0/dafcffc5-4826-4bf1-8ff6-46b8a31ff8e2',
+ parc: {
+ 'Cytoarchitectonic Maps - v2.5.1': {
+ id: 'minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579-25'
+ },
+ 'Short Fiber Bundles - HCP': {
+ id: 'juelich/iav/atlas/v1.0.0/79cbeaa4ee96d5d3dfe2876e9f74b3dc3d3ffb84304fb9b965b1776563a1069c'
+ },
+ 'Cytoarchitectonic maps - v1.18': {
+ id: 'juelich/iav/atlas/v1.0.0/8'
+ },
+ 'Long Bundle': {
+ id: 'juelich/iav/atlas/v1.0.0/5'
+ },
+ 'fibre bundle short': {
+ id: 'juelich/iav/atlas/v1.0.0/6'
+ },
+ 'DiFuMo Atlas (64 dimensions)': {
+ id: 'minds/core/parcellationatlas/v1.0.0/d80fbab2-ce7f-4901-a3a2-3c8ef8a3b721'
+ },
+ 'DiFuMo Atlas (128 dimensions)': {
+ id: 'minds/core/parcellationatlas/v1.0.0/73f41e04-b7ee-4301-a828-4b298ad05ab8'
+ },
+ 'DiFuMo Atlas (256 dimensions)': {
+ id: 'minds/core/parcellationatlas/v1.0.0/141d510f-0342-4f94-ace7-c97d5f160235'
+ },
+ 'DiFuMo Atlas (512 dimensions)': {
+ id: 'minds/core/parcellationatlas/v1.0.0/63b5794f-79a4-4464-8dc1-b32e170f3d16'
+ },
+ 'DiFuMo Atlas (1024 dimensions)': {
+ id: 'minds/core/parcellationatlas/v1.0.0/12fca5c5-b02c-46ce-ab9f-f12babf4c7e1'
+ },
+ },
+ },
+ 'MNI Colin 27': {
+ aId: 'juelich/iav/atlas/v1.0.0/1',
+ id: 'minds/core/referencespace/v1.0.0/7f39f7be-445b-47c0-9791-e971c0b6d992',
+ parc: {
+ 'Cytoarchitectonic Maps - v2.5.1': {
+ id: 'minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579-25'
+ },
+ 'Cytoarchitectonic Maps - v1.18': {
+ id: 'juelich/iav/atlas/v1.0.0/8'
+ }
+ }
+ },
+ 'Waxholm Space rat brain MRI/DTI': waxolmObj,
+ 'Waxholm Rat V2.0': waxolmObj,
+ 'Allen Mouse Common Coordinate Framework v3': allenObj,
+ 'Allen Mouse': allenObj
+}
+
+module.exports = query => {
+ const {
+ standaloneVolumes,
+ niftiLayers, // deprecating - check if anyone calls this url
+ pluginStates,
+ previewingDatasetFiles,
+
+ templateSelected,
+ parcellationSelected,
+ regionsSelected, // deprecating - check if any one calls this url
+ cRegionsSelected,
+
+ navigation, // deprecating - check if any one calls this endpoint
+ cNavigation,
+ } = query || {}
+
+ if (navigation) console.warn(`navigation has been deprecated`)
+ if (regionsSelected) console.warn(`regionSelected has been deprecated`)
+ if (niftiLayers) console.warn(`nifitlayers has been deprecated`)
+
+ // pluginStates from query param were separated by __
+ // convert to uri component encoded JSON array
+ // to avoid potentially issues (e.g. url containing __, which is very possible)
+
+ const plugins = pluginStates && pluginStates.split('__')
+
+ let redirectUrl = '/#'
+ if (standaloneVolumes) {
+ redirectUrl += `/sv:${encodeURIComponent(standaloneVolumes)}`
+ if (cNavigation) redirectUrl += `/@:${encodeURIComponent(cNavigation)}`
+ if (previewingDatasetFiles) redirectUrl += `/dsp:${encodeURIComponent(previewingDatasetFiles)}`
+ if (plugins && plugins.length > 0) redirectUrl += `/pl:${encodeURIComponent(plugins)}`
+
+ if (niftiLayers) redirectUrl += `&niftiLayers=${encodeURIComponent(niftiLayers)}`
+ return redirectUrl
+ }
+
+ if (templateSelected && templateMap[templateSelected]) {
+ const { id: t, aId: a, parc } = templateMap[templateSelected]
+ redirectUrl += `/a:${encodeURIComponent(a)}/t:${encodeURIComponent(t)}`
+ const { id: p } = parc[parcellationSelected] || {}
+ if (p) redirectUrl += `/p:${encodeURIComponent(p)}`
+ if (cRegionsSelected) redirectUrl += `/r:${encodeURIComponent(cRegionsSelected)}`
+ if (cNavigation) redirectUrl += `/@:${encodeURIComponent(cNavigation)}`
+ if (previewingDatasetFiles) redirectUrl += `/dsp:${encodeURIComponent(previewingDatasetFiles)}`
+ if (plugins && plugins.length > 0) redirectUrl += `/pl:${encodeURIComponent(plugins)}`
+
+ if (niftiLayers) redirectUrl += `&niftiLayers=${encodeURIComponent(niftiLayers)}`
+ return redirectUrl
+ }
+ return null
+}
diff --git a/deploy/bkwdCompat/urlState.spec.js b/deploy/bkwdCompat/urlState.spec.js
new file mode 100644
index 000000000..225bf252f
--- /dev/null
+++ b/deploy/bkwdCompat/urlState.spec.js
@@ -0,0 +1,18 @@
+const { assert } = require('chai')
+const url = require('url')
+const arr = require('./ngLinks.json')
+const parseUrlState = require('./urlState')
+
+describe('> urlState.js', () => {
+ it('> works', () => {
+ for (const item of arr) {
+ const parsed = url.parse(`/?${item}`, true)
+ const out = parseUrlState(parsed.query)
+
+ assert(
+ true,
+ 'should not result in parsing error'
+ )
+ }
+ })
+})
diff --git a/docs/releases/v2.4.0.md b/docs/releases/v2.4.0.md
index b63ca6886..c5a089936 100644
--- a/docs/releases/v2.4.0.md
+++ b/docs/releases/v2.4.0.md
@@ -16,4 +16,5 @@
- reworked screenshot component, removed html2canvas dependency
- deprecated `getToastHandler` and `geModalHandler` in plugin API
- updated `openid-client` (#696) and removed unused dependencies
-- allowing for `/user` and `/user/config` endpoints to return non error, even if the user is not logged in. (#767)
\ No newline at end of file
+- allowing for `/user` and `/user/config` endpoints to return non error, even if the user is not logged in. (#767)
+- use routing instead of query param (#858)
diff --git a/package.json b/package.json
index 1f9d0340c..c32b06f78 100644
--- a/package.json
+++ b/package.json
@@ -76,6 +76,7 @@
"webpack-merge": "^4.1.2"
},
"dependencies": {
+ "@angular/router": "^9.1.13",
"@ngrx/effects": "^9.1.1",
"@ngrx/store": "^9.1.1",
"@types/node": "12.12.39",
diff --git a/src/atlasViewer/atlasViewer.history.service.spec.ts b/src/atlasViewer/atlasViewer.history.service.spec.ts
deleted file mode 100644
index 97e1e6fd1..000000000
--- a/src/atlasViewer/atlasViewer.history.service.spec.ts
+++ /dev/null
@@ -1,125 +0,0 @@
-import { AtlasViewerHistoryUseEffect } from './atlasViewer.history.service'
-import { TestBed, tick, fakeAsync, flush } from '@angular/core/testing'
-import { provideMockActions } from '@ngrx/effects/testing'
-import { provideMockStore } from '@ngrx/store/testing'
-import { Observable, of, Subscription } from 'rxjs'
-import { Action, Store } from '@ngrx/store'
-import { defaultRootState } from '../services/stateStore.service'
-import { cold } from 'jasmine-marbles'
-import { HttpClientTestingModule } from '@angular/common/http/testing'
-
-const bigbrainJson = require('!json-loader!src/res/ext/bigbrain.json')
-
-const actions$: Observable<Action> = of({type: 'TEST'})
-
-describe('atlasviewer.history.service.ts', () => {
- beforeEach(() => {
- TestBed.configureTestingModule({
- imports: [
- HttpClientTestingModule
- ],
- providers: [
- AtlasViewerHistoryUseEffect,
- provideMockActions(() => actions$),
- provideMockStore({ initialState: defaultRootState })
- ]
- })
- })
-
- afterEach(() => {
- })
-
- describe('currentStateSearchParam$', () => {
-
- it('should fire when template is set', () => {
-
- const effect = TestBed.get(AtlasViewerHistoryUseEffect)
- const store = TestBed.get(Store)
- const { viewerState } = defaultRootState
- store.setState({
- ...defaultRootState,
- viewerState: {
- ...viewerState,
- templateSelected: bigbrainJson
- }
- })
-
- const expected = cold('(a)', {
- a: 'templateSelected=Big+Brain+%28Histology%29'
- })
- expect(effect.currentStateSearchParam$).toBeObservable(expected)
- })
-
- it('should fire when template and parcellation is set', () => {
-
- const effect = TestBed.get(AtlasViewerHistoryUseEffect)
- const store = TestBed.get(Store)
- const { viewerState } = defaultRootState
- store.setState({
- ...defaultRootState,
- viewerState: {
- ...viewerState,
- templateSelected: bigbrainJson,
- parcellationSelected: bigbrainJson.parcellations[0]
- }
- })
-
- const expected = cold('(a)', {
- a: 'templateSelected=Big+Brain+%28Histology%29&parcellationSelected=Cytoarchitectonic+Maps+-+v2.4'
- })
-
- expect(effect.currentStateSearchParam$).toBeObservable(expected)
- })
- })
-
-
- describe('setNewSearchString$', () => {
-
- const obj = {
- spiedFn: () => {}
- }
- const subscriptions: Subscription[] = []
-
- let spy
-
- beforeAll(() => {
- spy = spyOn(obj, 'spiedFn')
- })
-
- beforeEach(() => {
- spy.calls.reset()
- })
-
- afterEach(() => {
- while (subscriptions.length > 0) subscriptions.pop().unsubscribe()
- })
-
- it('should fire when set', fakeAsync(() => {
-
- const store = TestBed.get(Store)
- const effect = TestBed.get(AtlasViewerHistoryUseEffect)
- subscriptions.push(
- effect.setNewSearchString$.subscribe(obj.spiedFn)
- )
- const { viewerState } = defaultRootState
-
- store.setState({
- ...defaultRootState,
- viewerState: {
- ...viewerState,
- templateSelected: bigbrainJson,
- parcellationSelected: bigbrainJson.parcellations[0]
- }
- })
- tick(100)
- expect(spy).toHaveBeenCalledTimes(1)
- }))
-
- it('should not call window.history.pushState on start', fakeAsync(() => {
- tick(100)
- expect(spy).toHaveBeenCalledTimes(0)
- }))
-
- })
-
-})
\ No newline at end of file
diff --git a/src/atlasViewer/atlasViewer.history.service.ts b/src/atlasViewer/atlasViewer.history.service.ts
deleted file mode 100644
index 6df36758a..000000000
--- a/src/atlasViewer/atlasViewer.history.service.ts
+++ /dev/null
@@ -1,147 +0,0 @@
-import { Injectable, OnDestroy } from "@angular/core";
-import { Actions, Effect, ofType } from '@ngrx/effects'
-import { Store } from "@ngrx/store";
-import { fromEvent, merge, of, Subscription } from "rxjs";
-import { debounceTime, distinctUntilChanged, filter, map, startWith, switchMap, switchMapTo, take, withLatestFrom, shareReplay } from "rxjs/operators";
-import { defaultRootState, GENERAL_ACTION_TYPES, IavRootStoreInterface } from "src/services/stateStore.service";
-import { AtlasViewerConstantsServices } from "src/atlasViewer/atlasViewer.constantService.service";
-import { cvtSearchParamToState, cvtStateToSearchParam } from "./atlasViewer.urlUtil";
-import { viewerStateHelperStoreName } from '../services/state/viewerState.store.helper'
-import { PureContantService } from "src/util";
-const getSearchParamStringFromState = state => {
- try {
- return cvtStateToSearchParam(state).toString()
- } catch (e) {
- throw new Error(`cvt state to search param error ${e.toString()}`)
- }
-}
-
-@Injectable({
- providedIn: 'root',
-})
-
-export class AtlasViewerHistoryUseEffect implements OnDestroy {
-
- // ensure that fetchedTemplates are all populated
- @Effect()
- public parsingSearchUrlToState$ = this.store$.pipe(
- filter(state => {
- return state.viewerState.fetchedTemplates.length === this.constantService.totalTemplates &&
- state[viewerStateHelperStoreName].fetchedAtlases.length === this.pureConstantSErvice.totalAtlasesLength
- }),
- take(1),
- switchMapTo(merge(
- // parsing state can occur via 2 ways:
- // either pop state event or on launch
- fromEvent(window, 'popstate').pipe(
- map(({ state }: PopStateEvent) => state),
- ),
- of(new URLSearchParams(window.location.search).toString()),
- )),
- ).pipe(
- withLatestFrom(this.store$),
- map(([searchUrl, storeState]: [string, any] ) => {
- const search = new URLSearchParams(searchUrl)
- try {
- if (Array.from(search.keys()).length === 0) {
- // if empty searchParam
- return {
- type: GENERAL_ACTION_TYPES.APPLY_STATE,
- state: {
- ...defaultRootState,
- ...storeState,
- viewerState: {
- ...defaultRootState.viewerState,
- fetchedTemplates: storeState.viewerState.fetchedTemplates,
- },
- },
- }
- } else {
- // if non empty search param
- const newState = cvtSearchParamToState(search, storeState)
- return {
- type: GENERAL_ACTION_TYPES.APPLY_STATE,
- state: newState,
- }
- }
- } catch (e) {
- // usually parsing error
- // TODO should log
- return {
- type: GENERAL_ACTION_TYPES.APPLY_STATE,
- state: {
- ...defaultRootState,
- viewerState: {
- ...defaultRootState.viewerState,
- fetchedTemplates: storeState.viewerState.fetchedTemplates,
- },
- viewerStateHelper: {
- ...defaultRootState.viewerStateHelper,
- fetchedAtlases: storeState.viewerStateHelper.fetchedAtlases
- }
- },
- }
- }
- }),
- )
-
- private subscriptions: Subscription[] = []
-
- private currentStateSearchParam$ = this.store$.pipe(
- map(s => {
- try {
- return getSearchParamStringFromState(s)
- } catch (e) {
- // TODO parsing state to search param error
- return null
- }
- }),
- filter(v => v !== null),
- )
-
- // GENERAL_ACTION_TYPES.APPLY_STATE is triggered by pop state or initial
- // conventiently, the action has a state property
- public setNewSearchString$ = this.actions$.pipe(
- ofType(GENERAL_ACTION_TYPES.APPLY_STATE),
- // subscribe to inner obs on init
- startWith({}),
- switchMap(({ state }: any) =>
- this.currentStateSearchParam$.pipe(
- shareReplay(1),
- distinctUntilChanged(),
- debounceTime(100),
-
- // compares the searchParam triggerd by change of state with the searchParam generated by GENERAL_ACTION_TYPES.APPLY_STATE
- // if the same, the change is induced by GENERAL_ACTION_TYPES.APPLY_STATE, and should NOT be pushed to history
- filter((newSearchParam, index) => {
- try {
- const oldSearchParam = (state && getSearchParamStringFromState(state)) || ''
-
- // in the unlikely event that user returns to the exact same state without use forward/back button
- return index > 0 || newSearchParam !== oldSearchParam
- } catch (e) {
- return index > 0 || newSearchParam !== ''
- }
- })
- )
- )
- )
-
- constructor(
- private store$: Store<IavRootStoreInterface>,
- private actions$: Actions,
- private constantService: AtlasViewerConstantsServices,
- private pureConstantSErvice: PureContantService
- ) {
-
- this.setNewSearchString$.subscribe(newSearchString => {
- const url = new URL(window.location.toString())
- url.search = newSearchString
- window.history.pushState(newSearchString, '', url.toString())
- })
- }
-
- public ngOnDestroy() {
- while (this.subscriptions.length > 0) { this.subscriptions.pop().unsubscribe() }
- }
-}
diff --git a/src/atlasViewer/atlasViewer.urlUtil.spec.ts b/src/atlasViewer/atlasViewer.urlUtil.spec.ts
deleted file mode 100644
index bc47b72d3..000000000
--- a/src/atlasViewer/atlasViewer.urlUtil.spec.ts
+++ /dev/null
@@ -1,337 +0,0 @@
-// tslint:disable:no-empty
-
-import {} from 'jasmine'
-import { defaultRootState } from 'src/services/stateStore.service'
-import { cvtSearchParamToState, cvtStateToSearchParam, decodeToNumber, encodeNumber } from './atlasViewer.urlUtil'
-
-const bigbrainJson = require('!json-loader!src/res/ext/bigbrain.json')
-const colin = require('!json-loader!src/res/ext/colin.json')
-const mni152 = require('!json-loader!src/res/ext/MNI152.json')
-const mni152Nehubaconfig = require('!json-loader!src/res/ext/MNI152NehubaConfig.json')
-const allen = require('!json-loader!src/res/ext/allenMouse.json')
-const waxholm = require('!json-loader!src/res/ext/waxholmRatV2_0.json')
-const atlasHumanMultilevel = require('!json-loader!src/res/ext/atlas/atlas_multiLevelHuman.json')
-
-const { defaultState: viewerHelperDefaultState,viewerStateHelperStoreName } = require('src/services/state/viewerState.store.helper')
-
-const { viewerState, ...rest } = defaultRootState
-const fetchedTemplateRootState = {
- ...rest,
- viewerState: {
- ...viewerState,
- fetchedTemplates: [ bigbrainJson, colin, mni152, allen, waxholm ],
- },
- [viewerStateHelperStoreName]: {
- ...viewerHelperDefaultState,
- fetchedAtlases: [ atlasHumanMultilevel ]
- }
-}
-
-// TODO finish writing tests
-describe('atlasViewer.urlUtil.ts', () => {
- describe('cvtSearchParamToState', () => {
-
- it('> convert empty search param to empty state', () => {
- const searchparam = new URLSearchParams()
- expect(() => cvtSearchParamToState(searchparam, defaultRootState)).toThrow()
- })
-
- it('> parses template into atlasId properly', () => {
- const searchparam = new URLSearchParams()
- searchparam.set('templateSelected', bigbrainJson.name)
-
- const newState = cvtSearchParamToState(searchparam, fetchedTemplateRootState)
- expect(
- newState[viewerStateHelperStoreName]['selectedAtlasId']
- ).toEqual(
- atlasHumanMultilevel['@id']
- )
- })
-
- describe('> parses parcellation selected into overlayingAdditionalParcellations properly', () => {
- it('> if the selected layer is base layer, it should not populate overlayingAdditionalParcellations', () => {
- const searchparam = new URLSearchParams()
-
- searchparam.set('templateSelected', bigbrainJson.name)
- searchparam.set('parcellationSelected', bigbrainJson.parcellations[0].name)
-
- const newState = cvtSearchParamToState(searchparam, fetchedTemplateRootState)
- expect(
- newState[viewerStateHelperStoreName]['overlayingAdditionalParcellations']
- ).toEqual([])
- })
-
- it('> if the selected layer is non base layer, it should be populated', () => {
- const searchparam = new URLSearchParams()
-
- searchparam.set('templateSelected', bigbrainJson.name)
- searchparam.set('parcellationSelected', bigbrainJson.parcellations[1].name)
-
- const newState = cvtSearchParamToState(searchparam, fetchedTemplateRootState)
- expect(
- newState[viewerStateHelperStoreName]['overlayingAdditionalParcellations'].length
- ).toEqual(1)
- expect(
- newState[viewerStateHelperStoreName]['overlayingAdditionalParcellations'][0]['@id']
- ).toEqual(bigbrainJson.parcellations[1]['@id'])
- })
- })
-
- it('> successfully converts with only template defined', () => {
- const searchparam = new URLSearchParams('?templateSelected=Big+Brain+%28Histology%29')
-
- const newState = cvtSearchParamToState(searchparam, fetchedTemplateRootState)
-
- const { parcellationSelected, templateSelected } = newState.viewerState
- expect(templateSelected.name).toEqual(bigbrainJson.name)
- expect(parcellationSelected.name).toEqual(bigbrainJson.parcellations[0].name)
- })
-
- it('successfully converts with template AND parcellation defined', () => {
- const searchparam = new URLSearchParams()
- searchparam.set('templateSelected', mni152.name)
- searchparam.set('parcellationSelected', mni152.parcellations[1].name)
-
- const newState = cvtSearchParamToState(searchparam, fetchedTemplateRootState)
-
- const { parcellationSelected, templateSelected } = newState.viewerState
- expect(templateSelected.name).toEqual(mni152.name)
- expect(parcellationSelected.name).toEqual(mni152.parcellations[1].name)
- })
-
- it('successfully converts with template, parcellation AND selected regions defined', () => {
-
- })
-
- it('parses cNavigation correctly', () => {
-
- })
-
- describe('niftiLayers', () => {
- let searchparam = new URLSearchParams()
- beforeEach(() => {
- searchparam = new URLSearchParams()
- searchparam.set('templateSelected', mni152.name)
- searchparam.set('parcellationSelected', mni152.parcellations[1].name)
- })
-
-
- it('parses niftiLayers correctly', () => {
- const uri1 = `https://neuroglancer.humanbrainproject.eu/precomputed/JuBrain/17/icbm152casym/pmaps/Visual_hOc1_r_N10_nlin2MNI152ASYM2009C_2.4_publicP_a48ca5d938781ebaf1eaa25f59df74d0.nii.gz`
- const uri2 = `https://neuroglancer.humanbrainproject.eu/precomputed/JuBrain/17/icbm152casym/pmaps/Visual_hOc1_r_N10_nlin2MNI152ASYM2009C_2000.4_publicP_a48ca5d938781ebaf1eaa25f59df74d0.nii.gz`
- searchparam.set('niftiLayers', [uri1, uri2].join('__'))
-
- const newState = cvtSearchParamToState(searchparam, fetchedTemplateRootState)
- expect(newState.ngViewerState.layers.length).toEqual(2)
-
- const layer1 = newState.ngViewerState.layers[0]
- expect(layer1.name).toEqual(uri1)
- expect(layer1.source).toEqual(`nifti://${uri1}`)
- expect(layer1.mixability).toEqual('nonmixable')
-
- const layer2 = newState.ngViewerState.layers[1]
- expect(layer2.name).toEqual(uri2)
- expect(layer2.source).toEqual(`nifti://${uri2}`)
- expect(layer2.mixability).toEqual('nonmixable')
- })
-
- it('parses multiple niftiLayers correctly', () => {
-
- const uri = `https://neuroglancer.humanbrainproject.eu/precomputed/JuBrain/17/icbm152casym/pmaps/Visual_hOc1_r_N10_nlin2MNI152ASYM2009C_2.4_publicP_a48ca5d938781ebaf1eaa25f59df74d0.nii.gz`
- searchparam.set('niftiLayers', uri)
-
- const newState = cvtSearchParamToState(searchparam, fetchedTemplateRootState)
- expect(newState.ngViewerState.layers.length).toEqual(1)
-
- const layer = newState.ngViewerState.layers[0]
- expect(layer.name).toEqual(uri)
- expect(layer.source).toEqual(`nifti://${uri}`)
- expect(layer.mixability).toEqual('nonmixable')
- })
- })
-
- it('parses pluginStates correctly', () => {
- const searchParam = new URLSearchParams()
- searchParam.set('templateSelected', 'MNI 152 ICBM 2009c Nonlinear Asymmetric')
- searchParam.set('parcellationSelected', 'JuBrain Cytoarchitectonic Atlas')
- searchParam.set('pluginStates', 'http://localhost:3001/manifest.json')
-
- const newState = cvtSearchParamToState(searchParam, fetchedTemplateRootState)
- expect(newState.pluginState.initManifests).toEqual([
- ['INIT_MANIFEST_SRC', 'http://localhost:3001/manifest.json']
- ])
- })
-
- it('if both standaloneVolumes and templateSelected are set, only standaloneVolumes are honoured', () => {
- const searchParam = new URLSearchParams()
-
- searchParam.set('templateSelected', 'MNI 152 ICBM 2009c Nonlinear Asymmetric')
- searchParam.set('parcellationSelected', 'JuBrain Cytoarchitectonic Atlas')
- searchParam.set('standaloneVolumes', JSON.stringify(['nifti://http://localhost/nii.gz']))
-
- const newState = cvtSearchParamToState(searchParam, fetchedTemplateRootState)
- expect(newState.viewerState.templateSelected).toBeFalsy()
- expect(newState.viewerState.parcellationSelected).toBeFalsy()
- expect(newState.viewerState.standaloneVolumes).toEqual(['nifti://http://localhost/nii.gz'])
- })
- })
-
- describe('> cvtStateToSearchParam', () => {
-
- it('> should convert template selected', () => {
- const { viewerState } = defaultRootState
- const searchParam = cvtStateToSearchParam({
- ...defaultRootState,
- viewerState: {
- ...viewerState,
- templateSelected: bigbrainJson,
- }
- })
-
- const stringified = searchParam.toString()
- expect(stringified).toBe('templateSelected=Big+Brain+%28Histology%29')
- })
- it('> should convert template selected and parcellation selected', () => {
-
- const { viewerState } = defaultRootState
- const searchParam = cvtStateToSearchParam({
- ...defaultRootState,
- viewerState: {
- ...viewerState,
- templateSelected: bigbrainJson,
- parcellationSelected: bigbrainJson.parcellations[0]
- }
- })
-
- const stringified = searchParam.toString()
- expect(stringified).toBe('templateSelected=Big+Brain+%28Histology%29&parcellationSelected=Cytoarchitectonic+Maps+-+v2.4')
- })
- })
-
- const FLOAT_PRECISION = 6
-
- describe('encodeNumber/decodeToNumber', () => {
-
- const getCompareOriginal = (original: number[]) => (element: string, index: number) =>
- original[index].toString().length >= element.length
-
- const lengthShortened = (original: number[], encodedString: string[]) =>
- encodedString.every(getCompareOriginal(original))
-
- it('should encode/decode positive integer as expected', () => {
-
- const positiveInt = [
- 0,
- 1,
- 99999999999,
- 12347,
- ]
-
- const encodedString = positiveInt.map(n => encodeNumber(n))
- const decodedString = encodedString.map(s => decodeToNumber(s))
- expect(decodedString).toEqual(positiveInt)
-
- expect(lengthShortened(positiveInt, encodedString)).toBe(true)
- })
-
- it('should encode/decode ANY positive integer as expected', () => {
- const posInt = Array(1000).fill(null).map(() => {
- const numDig = Math.ceil(Math.random() * 7)
- return Math.floor(Math.random() * Math.pow(10, numDig))
- })
- const encodedString = posInt.map(n => encodeNumber(n))
- const decodedNumber = encodedString.map(s => decodeToNumber(s))
- expect(decodedNumber).toEqual(posInt)
-
- expect(lengthShortened(posInt, encodedString)).toBe(true)
- })
-
- it('should encode/decode signed integer as expected', () => {
-
- const signedInt = [
- 0,
- -0,
- -1,
- 1,
- 128,
- -54,
- ]
-
- const encodedString = signedInt.map(n => encodeNumber(n))
- const decodedNumber = encodedString.map(s => decodeToNumber(s))
-
- /**
- * -0 will be converted to 0 by the encode/decode process, but does not deep equal, according to jasmine
- */
- expect(decodedNumber).toEqual(signedInt.map(v => v === 0 ? 0 : v))
-
- expect(lengthShortened(signedInt, encodedString)).toBe(true)
- })
-
- it('should encode/decode ANY signed integer as expected', () => {
-
- const signedInt = Array(1000).fill(null).map(() => {
- const numDig = Math.ceil(Math.random() * 7)
- return Math.floor(Math.random() * Math.pow(10, numDig)) * (Math.random() > 0.5 ? 1 : -1)
- })
- const encodedString = signedInt.map(n => encodeNumber(n))
- const decodedNumber = encodedString.map(s => decodeToNumber(s))
-
- /**
- * -0 will be converted to 0 by the encode/decode process, but does not deep equal, according to jasmine
- */
- expect(decodedNumber).toEqual(signedInt.map(v => v === 0 ? 0 : v))
-
- expect(lengthShortened(signedInt, encodedString)).toBe(true)
- })
-
- it('should encode/decode float as expected', () => {
- const floatNum = [
- 0.111,
- 12.23,
- 1723.0,
- ]
-
- const encodedString = floatNum.map(f => encodeNumber(f, { float: true }))
- const decodedNumber = encodedString.map(s => decodeToNumber(s, { float: true }))
- expect(decodedNumber.map(n => n.toFixed(FLOAT_PRECISION))).toEqual(floatNum.map(n => n.toFixed(FLOAT_PRECISION)))
- })
-
- it('should encode/decode ANY float as expected', () => {
- const floatNums = Array(1000).fill(null).map(() => {
- const numDig = Math.ceil(Math.random() * 7)
- return (Math.random() > 0.5 ? 1 : -1) * Math.floor(
- Math.random() * Math.pow(10, numDig),
- )
- })
-
- const encodedString = floatNums.map(f => encodeNumber(f, { float: true }))
- const decodedNumber = encodedString.map(s => decodeToNumber(s, { float: true }))
-
- expect(floatNums.map(v => v.toFixed(FLOAT_PRECISION))).toEqual(decodedNumber.map(n => n.toFixed(FLOAT_PRECISION)))
- })
-
- it('poisoned hash should throw', () => {
- const illegialCharacters = './\\?#!@#^%&*()+={}[]\'"\n\t;:'
- for (const char of illegialCharacters.split('')) {
- expect(() => {
- decodeToNumber(char)
- }).toThrow()
- }
- })
-
- it('poisoned hash can be caught', () => {
-
- const testArray = ['abc', './\\', 'Cde']
- const decodedNum = testArray.map(v => {
- try {
- return decodeToNumber(v)
- } catch (e) {
- return null
- }
- }).filter(v => !!v)
- expect(decodedNum.length).toEqual(2)
- })
- })
-
-})
diff --git a/src/atlasViewer/atlasViewer.urlUtil.ts b/src/atlasViewer/atlasViewer.urlUtil.ts
deleted file mode 100644
index 690094788..000000000
--- a/src/atlasViewer/atlasViewer.urlUtil.ts
+++ /dev/null
@@ -1,437 +0,0 @@
-import { getGetRegionFromLabelIndexId } from 'src/util/fn'
-import { mixNgLayers } from "src/services/state/ngViewerState.store";
-import { PLUGINSTORE_CONSTANTS } from 'src/services/state/pluginState.store'
-import { getShader, PMAP_DEFAULT_CONFIG } from "src/util/constants";
-import { viewerStateHelperStoreName } from "src/services/state/viewerState.store.helper";
-import { serialiseParcellationRegion } from "common/util"
-export const PARSING_SEARCHPARAM_ERROR = {
- TEMPALTE_NOT_SET: 'TEMPALTE_NOT_SET',
- TEMPLATE_NOT_FOUND: 'TEMPLATE_NOT_FOUND',
- PARCELLATION_NOT_UPDATED: 'PARCELLATION_NOT_UPDATED',
-}
-const PARSING_SEARCHPARAM_WARNING = {
- UNKNOWN_PARCELLATION: 'UNKNOWN_PARCELLATION',
- DECODE_CIPHER_ERROR: 'DECODE_CIPHER_ERROR',
- ID_ERROR: 'ID_ERROR'
-}
-
-export const CVT_STATE_TO_SEARCHPARAM_ERROR = {
- TEMPLATE_NOT_SELECTED: 'TEMPLATE_NOT_SELECTED',
-}
-
-/**
- * First attempt at encoding int (e.g. selected region, navigation location) from number (loc info density) to b64 (higher info density)
- * The constraint is that the cipher needs to be commpatible with URI encoding
- * and a URI compatible separator is required.
- *
- * The implementation below came from
- * https://stackoverflow.com/a/6573119/6059235
- *
- * While a faster solution exist in the same post, this operation is expected to be done:
- * - once per 1 sec frequency
- * - on < 1000 numbers
- *
- * So performance is not really that important (Also, need to learn bitwise operation)
- */
-
-const cipher = '0123456789ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz_-'
-export const separator = "."
-const negString = '~'
-
-const encodeInt = (number: number) => {
- if (number % 1 !== 0) { throw new Error('cannot encodeInt on a float. Ensure float flag is set') }
- if (isNaN(Number(number)) || number === null || number === Number.POSITIVE_INFINITY) { throw new Error('The input is not valid') }
-
- let rixit // like 'digit', only in some non-decimal radix
- let residual
- let result = ''
-
- if (number < 0) {
- result += negString
- residual = Math.floor(number * -1)
- } else {
- residual = Math.floor(number)
- }
-
- /* eslint-disable-next-line no-constant-condition */
- while (true) {
- rixit = residual % 64
- // this.log.log("rixit : " + rixit)
- // this.log.log("result before : " + result)
- result = cipher.charAt(rixit) + result
- // this.log.log("result after : " + result)
- // this.log.log("residual before : " + residual)
- residual = Math.floor(residual / 64)
- // this.log.log("residual after : " + residual)
-
- if (residual === 0) {
- break;
- }
- }
- return result
-}
-
-interface IB64EncodingOption {
- float: boolean
-}
-
-const defaultB64EncodingOption = {
- float: false,
-}
-
-export const encodeNumber:
- (number: number, option?: IB64EncodingOption) => string =
- (number: number, { float = false }: IB64EncodingOption = defaultB64EncodingOption) => {
- if (!float) { return encodeInt(number) } else {
- const floatArray = new Float32Array(1)
- floatArray[0] = number
- const intArray = new Uint32Array(floatArray.buffer)
- const castedInt = intArray[0]
- return encodeInt(castedInt)
- }
- }
-
-const decodetoInt = (encodedString: string) => {
- let _encodedString
- let negFlag = false
- if (encodedString.slice(-1) === negString) {
- negFlag = true
- _encodedString = encodedString.slice(0, -1)
- } else {
- _encodedString = encodedString
- }
- return (negFlag ? -1 : 1) * [..._encodedString].reduce((acc, curr) => {
- const index = cipher.indexOf(curr)
- if (index < 0) { throw new Error(`Poisoned b64 encoding ${encodedString}`) }
- return acc * 64 + index
- }, 0)
-}
-
-export const decodeToNumber:
- (encodedString: string, option?: IB64EncodingOption) => number =
- (encodedString: string, {float = false} = defaultB64EncodingOption) => {
- if (!float) { return decodetoInt(encodedString) } else {
- const _int = decodetoInt(encodedString)
- const intArray = new Uint32Array(1)
- intArray[0] = _int
- const castedFloat = new Float32Array(intArray.buffer)
- return castedFloat[0]
- }
- }
-
-
-export const cvtStateToSearchParam = (state: any): URLSearchParams => {
- const searchParam = new URLSearchParams()
-
- const { viewerState, pluginState, uiState } = state
- const { templateSelected, parcellationSelected, navigation, regionsSelected, standaloneVolumes } = viewerState
-
- if (standaloneVolumes && Array.isArray(standaloneVolumes) && standaloneVolumes.length > 0) {
- searchParam.set('standaloneVolumes', JSON.stringify(standaloneVolumes))
- } else {
- if (!templateSelected) { throw new Error(CVT_STATE_TO_SEARCHPARAM_ERROR.TEMPLATE_NOT_SELECTED) }
-
- // encoding states
- searchParam.set('templateSelected', templateSelected.name)
- if (!!parcellationSelected) searchParam.set('parcellationSelected', parcellationSelected.name)
-
- // encoding selected regions
- const accumulatorMap = new Map<string, number[]>()
- for (const region of regionsSelected) {
- const { ngId, labelIndex } = region
- const existingEntry = accumulatorMap.get(ngId)
- if (existingEntry) { existingEntry.push(labelIndex) } else { accumulatorMap.set(ngId, [ labelIndex ]) }
- }
- const cRegionObj = {}
- for (const [key, arr] of accumulatorMap) {
- cRegionObj[key] = arr.map(n => encodeNumber(n)).join(separator)
- }
- if (Object.keys(cRegionObj).length > 0) searchParam.set('cRegionsSelected', JSON.stringify(cRegionObj))
- }
- // encoding navigation
- if (navigation) {
- const { orientation, perspectiveOrientation, perspectiveZoom, position, zoom } = navigation
- if (orientation && perspectiveOrientation && perspectiveZoom && position && zoom) {
- const cNavString = [
- orientation.map(n => encodeNumber(n, {float: true})).join(separator),
- perspectiveOrientation.map(n => encodeNumber(n, {float: true})).join(separator),
- encodeNumber(Math.floor(perspectiveZoom)),
- Array.from(position).map((v: number) => Math.floor(v)).map(n => encodeNumber(n)).join(separator),
- encodeNumber(Math.floor(zoom)),
- ].join(`${separator}${separator}`)
- searchParam.set('cNavigation', cNavString)
- }
- }
-
- // plugin state
- const { initManifests } = pluginState
- const pluginStateParam = (initManifests as any[])
- .filter(([ src ]) => src !== PLUGINSTORE_CONSTANTS.INIT_MANIFEST_SRC)
- .map(([ _src, url]) => url)
- .join('__')
-
- // previewDataset state
-
- const { previewingDatasetFiles } = uiState
-
- if (previewingDatasetFiles && Array.isArray(previewingDatasetFiles)) {
- const dsPrvArr = []
- const datasetPreviews = (previewingDatasetFiles as {datasetId: string, filename: string}[])
- for (const preview of datasetPreviews) {
- dsPrvArr.push(preview)
- }
-
- if (dsPrvArr.length > 0) searchParam.set('previewingDatasetFiles', JSON.stringify(dsPrvArr))
- }
-
- if (initManifests.length > 0) { searchParam.set('pluginState', pluginStateParam) }
-
- return searchParam
-}
-
-const { TEMPLATE_NOT_FOUND, TEMPALTE_NOT_SET, PARCELLATION_NOT_UPDATED } = PARSING_SEARCHPARAM_ERROR
-const { UNKNOWN_PARCELLATION, DECODE_CIPHER_ERROR, ID_ERROR } = PARSING_SEARCHPARAM_WARNING
-
-const parseSearchParamForTemplateParcellationRegion = (searchparams: URLSearchParams, state: any, cb?: (arg: any) => void) => {
-
-
- /**
- * TODO if search param of either template or parcellation is incorrect, wrong things are searched
- */
-
-
- const templateSelected = (() => {
- const { fetchedTemplates } = state.viewerState
-
- const searchedName = (() => {
- const param = searchparams.get('templateSelected')
- if (param === 'Allen Mouse') { return `Allen adult mouse brain reference atlas V3` }
- if (param === 'Waxholm Rat V2.0') { return 'Waxholm Space rat brain atlas v.2.0' }
- return param
- })()
-
- if (!searchedName) { throw new Error(TEMPALTE_NOT_SET) }
- const templateToLoad = fetchedTemplates.find(template => template.name === searchedName)
- if (!templateToLoad) { throw new Error(TEMPLATE_NOT_FOUND) }
- return templateToLoad
- })()
-
- const parcellationSelected = (() => {
- const searchedName = (() => {
- const param = searchparams.get('parcellationSelected')
- if (param === 'Allen Mouse Brain Atlas') { return 'Allen adult mouse brain reference atlas V3 Brain Atlas' }
- if (param === 'Whole Brain (v2.0)') { return 'Waxholm Space rat brain atlas v.2.0' }
- return param
- })()
- const parcellationToLoad = templateSelected.parcellations.find(parcellation => parcellation.name === searchedName)
- if (!parcellationToLoad) { cb && cb({ type: UNKNOWN_PARCELLATION }) }
- return parcellationToLoad || templateSelected.parcellations[0]
- })()
-
- /* selected regions */
-
- const regionsSelected = (() => {
-
- // TODO deprecate. Fallback (defaultNgId) (should) already exist
- // if (!viewerState.parcellationSelected.updated) throw new Error(PARCELLATION_NOT_UPDATED)
-
- const getRegionFromlabelIndexId = getGetRegionFromLabelIndexId({ parcellation: parcellationSelected })
- /**
- * either or both parcellationToLoad and .regions maybe empty
- */
- /**
- * backwards compatibility
- */
- const selectedRegionsParam = searchparams.get('regionsSelected')
- if (selectedRegionsParam) {
- const ids = selectedRegionsParam.split('_')
- return ids.map(labelIndexId => getRegionFromlabelIndexId({ labelIndexId }))
- }
-
- const cRegionsSelectedParam = searchparams.get('cRegionsSelected')
- if (cRegionsSelectedParam) {
- try {
- const json = JSON.parse(cRegionsSelectedParam)
-
- const selectRegionIds = []
-
- for (const ngId in json) {
- const val = json[ngId]
- const labelIndicies = val.split(separator).map(n => {
- try {
- return decodeToNumber(n)
- } catch (e) {
- /**
- * TODO poisonsed encoded char, send error message
- */
- cb && cb({ type: DECODE_CIPHER_ERROR, message: `cRegionSelectionParam is malformed: cannot decode ${n}` })
- return null
- }
- }).filter(v => !!v)
- for (const labelIndex of labelIndicies) {
- selectRegionIds.push( serialiseParcellationRegion({ ngId, labelIndex }) )
- }
- }
- return selectRegionIds
- .map(labelIndexId => {
- const region = getRegionFromlabelIndexId({ labelIndexId })
- if (!region) cb && cb({ type: ID_ERROR, message: `region with id ${labelIndexId} not found, and will be ignored.` })
- return region
- })
- .filter(r => !!r)
-
- } catch (e) {
- /**
- * parsing cRegionSelected error
- */
- cb && cb({ type: DECODE_CIPHER_ERROR, message: `parsing cRegionSelected error ${e.toString()}` })
- }
- }
- return []
- })()
-
- return {
- templateSelected,
- parcellationSelected,
- regionsSelected
- }
-}
-
-export const cvtSearchParamToState = (searchparams: URLSearchParams, state: any, callback?: (error: any) => void): any => {
-
- const returnState = JSON.parse(JSON.stringify(state)) as any
-
- /* eslint-disable-next-line @typescript-eslint/no-empty-function */
- const warningCb = callback || (() => {})
-
- const { viewerState } = returnState
-
- const searchParamStandaloneVolumes = (() => {
- const param = searchparams.get('standaloneVolumes')
- if (!param) {
- return null
- }
- const arr = JSON.parse(param)
- if (Array.isArray(arr)) {
- return arr
- }
- else {
- throw new Error(`param standaloneVolumes does not parse to array: ${param}`)
- }
- })()
-
- if (!!searchParamStandaloneVolumes) {
- viewerState.standaloneVolumes = searchParamStandaloneVolumes
- } else {
- const { templateSelected, parcellationSelected, regionsSelected } = parseSearchParamForTemplateParcellationRegion(searchparams, state, warningCb)
- viewerState.templateSelected = templateSelected
- viewerState.parcellationSelected = parcellationSelected
- viewerState.regionsSelected = regionsSelected
- }
-
- /* now that the parcellation is loaded, load the navigation state */
- /* what to do with malformed navigation? */
-
- // for backwards compatibility
- const _viewerState = searchparams.get('navigation')
- if (_viewerState) {
- const [o, po, pz, p, z] = _viewerState.split('__')
- viewerState.navigation = {
- orientation : o.split('_').map(n => Number(n)),
- perspectiveOrientation : po.split('_').map(n => Number(n)),
- perspectiveZoom : Number(pz),
- position : p.split('_').map(n => Number(n)),
- zoom : Number(z),
-
- // flag to allow for animation when enabled
- animation: {},
- }
- }
-
- const cViewerState = searchparams.get('cNavigation')
- if (cViewerState) {
- try {
- const [ cO, cPO, cPZ, cP, cZ ] = cViewerState.split(`${separator}${separator}`)
- const o = cO.split(separator).map(s => decodeToNumber(s, {float: true}))
- const po = cPO.split(separator).map(s => decodeToNumber(s, {float: true}))
- const pz = decodeToNumber(cPZ)
- const p = cP.split(separator).map(s => decodeToNumber(s))
- const z = decodeToNumber(cZ)
- viewerState.navigation = {
- orientation: o,
- perspectiveOrientation: po,
- perspectiveZoom: pz,
- position: p,
- zoom: z,
-
- // flag to allow for animation when enabled
- animation: {},
- }
- } catch (e) {
- /**
- * TODO Poisoned encoded char
- * send error message
- */
- }
- }
-
- const niftiLayers = searchparams.get('niftiLayers')
- if (niftiLayers) {
- const layers = niftiLayers
- .split('__')
- .map(layer => {
- return {
- name : layer,
- source : `nifti://${layer}`,
- mixability : 'nonmixable',
- shader : getShader(PMAP_DEFAULT_CONFIG),
- } as any
- })
- const { ngViewerState } = returnState
- ngViewerState.layers = mixNgLayers(ngViewerState.layers, layers)
- }
-
- const { pluginState } = returnState
- const pluginStates = searchparams.get('pluginStates')
- if (pluginStates) {
- const arrPluginStates = pluginStates.split('__')
- pluginState.initManifests = arrPluginStates.map(url => [PLUGINSTORE_CONSTANTS.INIT_MANIFEST_SRC, url] as [string, string])
- }
-
- const { uiState } = returnState
- const stringSearchParam = searchparams.get('previewingDatasetFiles')
- try {
- if (stringSearchParam) {
- const arr = JSON.parse(stringSearchParam) as Array<{datasetId: string, filename: string}>
- uiState.previewingDatasetFiles = arr.map(({ datasetId, filename }) => {
- return {
- datasetId,
- filename
- }
- })
- }
- } catch (e) {
- // parsing previewingDatasetFiles
- }
-
- /**
- * parsing template to get atlasId
- */
- (() => {
-
- const viewreHelperState = returnState[viewerStateHelperStoreName]
- const { templateSelected, parcellationSelected } = returnState['viewerState']
- const { fetchedAtlases, ...rest } = viewreHelperState
-
- const selectedAtlas = fetchedAtlases.find(a => a['templateSpaces'].find(t => t['@id'] === (templateSelected && templateSelected['@id'])))
-
- const overlayLayer = selectedAtlas && selectedAtlas['parcellations'].find(p => p['@id'] === (parcellationSelected && parcellationSelected['@id']))
-
- viewreHelperState['selectedAtlasId'] = selectedAtlas && selectedAtlas['@id']
- viewreHelperState['overlayingAdditionalParcellations'] = (overlayLayer && !overlayLayer['baseLayer'])
- ? [ overlayLayer ]
- : []
- })()
-
- return returnState
-}
diff --git a/src/main.module.ts b/src/main.module.ts
index 189e7a8a0..d6bd2eee0 100644
--- a/src/main.module.ts
+++ b/src/main.module.ts
@@ -36,7 +36,6 @@ import { ClickInterceptor, CLICK_INTERCEPTOR_INJECTOR, UtilModule } from "src/ut
import { SpotLightModule } from 'src/spotlight/spot-light.module'
import { TryMeComponent } from "./ui/tryme/tryme.component";
import { UiStateUseEffect } from "src/services/state/uiState.store";
-import { AtlasViewerHistoryUseEffect } from "./atlasViewer/atlasViewer.history.service";
import { PluginServiceUseEffect } from './services/effect/pluginUseEffect';
import { TemplateCoordinatesTransformation } from "src/services/templateCoordinatesTransformation.service";
import { NewTemplateUseEffect } from './services/effect/newTemplate.effect';
@@ -60,6 +59,7 @@ import { ViewerModule } from './viewerModule';
import { CookieModule } from './ui/cookieAgreement/module';
import { KgTosModule } from './ui/kgtos/module';
import { MouseoverModule } from './mouseoverModule/mouseover.module';
+import { AtlasViewerRouterModule } from './routerModule';
export function debug(reducer: ActionReducer<any>): ActionReducer<any> {
return function(state, action) {
@@ -92,6 +92,7 @@ export function debug(reducer: ActionReducer<any>): ActionReducer<any> {
CookieModule,
KgTosModule,
MouseoverModule,
+ AtlasViewerRouterModule,
EffectsModule.forRoot([
UseEffects,
@@ -100,7 +101,6 @@ export function debug(reducer: ActionReducer<any>): ActionReducer<any> {
ViewerStateUseEffect,
NgViewerUseEffect,
PluginServiceUseEffect,
- AtlasViewerHistoryUseEffect,
UiStateUseEffect,
NewTemplateUseEffect,
ViewerStateHelperEffect,
diff --git a/src/routerModule/cipher.spec.ts b/src/routerModule/cipher.spec.ts
new file mode 100644
index 000000000..c06a50c0b
--- /dev/null
+++ b/src/routerModule/cipher.spec.ts
@@ -0,0 +1,130 @@
+import { decodeToNumber, encodeNumber } from "./cipher"
+
+describe('common.ts', () => {
+
+ const FLOAT_PRECISION = 6
+ describe('encodeNumber/decodeToNumber', () => {
+
+ const getCompareOriginal = (original: number[]) => (element: string, index: number) =>
+ original[index].toString().length >= element.length
+
+ const lengthShortened = (original: number[], encodedString: string[]) =>
+ encodedString.every(getCompareOriginal(original))
+
+ it('should encode/decode positive integer as expected', () => {
+
+ const positiveInt = [
+ 0,
+ 1,
+ 99999999999,
+ 12347,
+ ]
+
+ const encodedString = positiveInt.map(n => encodeNumber(n))
+ const decodedString = encodedString.map(s => decodeToNumber(s))
+ expect(decodedString).toEqual(positiveInt)
+
+ expect(lengthShortened(positiveInt, encodedString)).toBe(true)
+ })
+
+ it('should encode/decode ANY positive integer as expected', () => {
+ const posInt = Array(1000).fill(null).map(() => {
+ const numDig = Math.ceil(Math.random() * 7)
+ return Math.floor(Math.random() * Math.pow(10, numDig))
+ })
+ const encodedString = posInt.map(n => encodeNumber(n))
+ const decodedNumber = encodedString.map(s => decodeToNumber(s))
+ expect(decodedNumber).toEqual(posInt)
+
+ expect(lengthShortened(posInt, encodedString)).toBe(true)
+ })
+
+ it('should encode/decode signed integer as expected', () => {
+
+ const signedInt = [
+ 0,
+ -0,
+ -1,
+ 1,
+ 128,
+ -54,
+ ]
+
+ const encodedString = signedInt.map(n => encodeNumber(n))
+ const decodedNumber = encodedString.map(s => decodeToNumber(s))
+
+ /**
+ * -0 will be converted to 0 by the encode/decode process, but does not deep equal, according to jasmine
+ */
+ expect(decodedNumber).toEqual(signedInt.map(v => v === 0 ? 0 : v))
+
+ expect(lengthShortened(signedInt, encodedString)).toBe(true)
+ })
+
+ it('should encode/decode ANY signed integer as expected', () => {
+
+ const signedInt = Array(1000).fill(null).map(() => {
+ const numDig = Math.ceil(Math.random() * 7)
+ return Math.floor(Math.random() * Math.pow(10, numDig)) * (Math.random() > 0.5 ? 1 : -1)
+ })
+ const encodedString = signedInt.map(n => encodeNumber(n))
+ const decodedNumber = encodedString.map(s => decodeToNumber(s))
+
+ /**
+ * -0 will be converted to 0 by the encode/decode process, but does not deep equal, according to jasmine
+ */
+ expect(decodedNumber).toEqual(signedInt.map(v => v === 0 ? 0 : v))
+
+ expect(lengthShortened(signedInt, encodedString)).toBe(true)
+ })
+
+ it('should encode/decode float as expected', () => {
+ const floatNum = [
+ 0.111,
+ 12.23,
+ 1723.0,
+ ]
+
+ const encodedString = floatNum.map(f => encodeNumber(f, { float: true }))
+ const decodedNumber = encodedString.map(s => decodeToNumber(s, { float: true }))
+ expect(decodedNumber.map(n => n.toFixed(FLOAT_PRECISION))).toEqual(floatNum.map(n => n.toFixed(FLOAT_PRECISION)))
+ })
+
+ it('should encode/decode ANY float as expected', () => {
+ const floatNums = Array(1000).fill(null).map(() => {
+ const numDig = Math.ceil(Math.random() * 7)
+ return (Math.random() > 0.5 ? 1 : -1) * Math.floor(
+ Math.random() * Math.pow(10, numDig),
+ )
+ })
+
+ const encodedString = floatNums.map(f => encodeNumber(f, { float: true }))
+ const decodedNumber = encodedString.map(s => decodeToNumber(s, { float: true }))
+
+ expect(floatNums.map(v => v.toFixed(FLOAT_PRECISION))).toEqual(decodedNumber.map(n => n.toFixed(FLOAT_PRECISION)))
+ })
+
+ it('poisoned hash should throw', () => {
+ const illegialCharacters = './\\?#!@#^%&*()+={}[]\'"\n\t;:'
+ for (const char of illegialCharacters.split('')) {
+ expect(() => {
+ decodeToNumber(char)
+ }).toThrow()
+ }
+ })
+
+ it('poisoned hash can be caught', () => {
+
+ const testArray = ['abc', './\\', 'Cde']
+ const decodedNum = testArray.map(v => {
+ try {
+ return decodeToNumber(v)
+ } catch (e) {
+ return null
+ }
+ }).filter(v => !!v)
+ expect(decodedNum.length).toEqual(2)
+ })
+ })
+
+})
diff --git a/src/routerModule/cipher.ts b/src/routerModule/cipher.ts
new file mode 100644
index 000000000..87cd9f870
--- /dev/null
+++ b/src/routerModule/cipher.ts
@@ -0,0 +1,99 @@
+/**
+ * First attempt at encoding int (e.g. selected region, navigation location) from number (loc info density) to b64 (higher info density)
+ * The constraint is that the cipher needs to be commpatible with URI encoding
+ * and a URI compatible separator is required.
+ *
+ * The implementation below came from
+ * https://stackoverflow.com/a/6573119/6059235
+ *
+ * While a faster solution exist in the same post, this operation is expected to be done:
+ * - once per 1 sec frequency
+ * - on < 1000 numbers
+ *
+ * So performance is not really that important (Also, need to learn bitwise operation)
+ */
+
+const cipher = '0123456789ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz_-'
+export const separator = "."
+const negString = '~'
+
+const encodeInt = (number: number) => {
+ if (number % 1 !== 0) { throw new Error('cannot encodeInt on a float. Ensure float flag is set') }
+ if (isNaN(Number(number)) || number === null || number === Number.POSITIVE_INFINITY) { throw new Error('The input is not valid') }
+
+ let rixit // like 'digit', only in some non-decimal radix
+ let residual
+ let result = ''
+
+ if (number < 0) {
+ result += negString
+ residual = Math.floor(number * -1)
+ } else {
+ residual = Math.floor(number)
+ }
+
+ /* eslint-disable-next-line no-constant-condition */
+ while (true) {
+ rixit = residual % 64
+ // this.log.log("rixit : " + rixit)
+ // this.log.log("result before : " + result)
+ result = cipher.charAt(rixit) + result
+ // this.log.log("result after : " + result)
+ // this.log.log("residual before : " + residual)
+ residual = Math.floor(residual / 64)
+ // this.log.log("residual after : " + residual)
+
+ if (residual === 0) {
+ break;
+ }
+ }
+ return result
+}
+
+interface IB64EncodingOption {
+ float: boolean
+}
+
+const defaultB64EncodingOption = {
+ float: false,
+}
+
+export const encodeNumber:
+ (number: number, option?: IB64EncodingOption) => string =
+ (number: number, { float = false }: IB64EncodingOption = defaultB64EncodingOption) => {
+ if (!float) { return encodeInt(number) } else {
+ const floatArray = new Float32Array(1)
+ floatArray[0] = number
+ const intArray = new Uint32Array(floatArray.buffer)
+ const castedInt = intArray[0]
+ return encodeInt(castedInt)
+ }
+ }
+
+const decodetoInt = (encodedString: string) => {
+ let _encodedString
+ let negFlag = false
+ if (encodedString.slice(-1) === negString) {
+ negFlag = true
+ _encodedString = encodedString.slice(0, -1)
+ } else {
+ _encodedString = encodedString
+ }
+ return (negFlag ? -1 : 1) * [..._encodedString].reduce((acc, curr) => {
+ const index = cipher.indexOf(curr)
+ if (index < 0) { throw new Error(`Poisoned b64 encoding ${encodedString}`) }
+ return acc * 64 + index
+ }, 0)
+}
+
+export const decodeToNumber:
+ (encodedString: string, option?: IB64EncodingOption) => number =
+ (encodedString: string, {float = false} = defaultB64EncodingOption) => {
+ if (!float) { return decodetoInt(encodedString) } else {
+ const _int = decodetoInt(encodedString)
+ const intArray = new Uint32Array(1)
+ intArray[0] = _int
+ const castedFloat = new Float32Array(intArray.buffer)
+ return castedFloat[0]
+ }
+ }
diff --git a/src/routerModule/index.ts b/src/routerModule/index.ts
new file mode 100644
index 000000000..bd2944c55
--- /dev/null
+++ b/src/routerModule/index.ts
@@ -0,0 +1 @@
+export { AtlasViewerRouterModule } from './module'
diff --git a/src/routerModule/module.ts b/src/routerModule/module.ts
new file mode 100644
index 000000000..1053deeb9
--- /dev/null
+++ b/src/routerModule/module.ts
@@ -0,0 +1,30 @@
+import { APP_BASE_HREF } from "@angular/common";
+import { NgModule } from "@angular/core";
+import { RouterModule } from '@angular/router'
+import { RouterService } from "./router.service";
+import { routes } from "./util";
+
+
+@NgModule({
+ imports:[
+ RouterModule.forRoot(routes, {
+ useHash: true
+ })
+ ],
+ providers: [
+ {
+ provide: APP_BASE_HREF,
+ useValue: '/'
+ },
+ RouterService
+ ],
+ exports:[
+ RouterModule
+ ]
+})
+
+export class AtlasViewerRouterModule{
+
+ // eslint-disable-next-line @typescript-eslint/no-empty-function
+ constructor(_service: RouterService){}
+}
diff --git a/src/routerModule/router.service.spec.ts b/src/routerModule/router.service.spec.ts
new file mode 100644
index 000000000..ef6505f89
--- /dev/null
+++ b/src/routerModule/router.service.spec.ts
@@ -0,0 +1,265 @@
+import { APP_BASE_HREF, Location } from "@angular/common"
+import { discardPeriodicTasks, fakeAsync, TestBed, tick } from "@angular/core/testing"
+import { Router } from "@angular/router"
+import { RouterTestingModule } from '@angular/router/testing'
+import { MockStore, provideMockStore } from "@ngrx/store/testing"
+import { hot } from "jasmine-marbles"
+import { of } from "rxjs"
+import { viewerStateFetchedAtlasesSelector, viewerStateFetchedTemplatesSelector } from "src/services/state/viewerState/selectors"
+import { PureContantService } from "src/util"
+import { RouterService } from "./router.service"
+import * as util from './util'
+
+const { routes, DummyCmp } = util
+const dummyPureConstantService = {
+ getTemplateEndpoint$: of(['dummy']),
+ totalAtlasesLength: 2
+}
+
+let cvtStateToHashedRoutesSpy: jasmine.Spy
+let cvtFullRouteToStateSpy: jasmine.Spy
+let location: Location
+let router: Router
+
+describe('> router.service.ts', () => {
+ describe('> RouterService', () => {
+ beforeEach(() => {
+ cvtStateToHashedRoutesSpy= jasmine.createSpy('cvtStateToHashedRoutesSpy')
+ cvtFullRouteToStateSpy= jasmine.createSpy('cvtFullRouteToState')
+
+ spyOnProperty(util, 'cvtStateToHashedRoutes').and.returnValue(cvtStateToHashedRoutesSpy)
+ spyOnProperty(util, 'cvtFullRouteToState').and.returnValue(cvtFullRouteToStateSpy)
+
+ TestBed.configureTestingModule({
+ imports: [
+ RouterTestingModule.withRoutes(routes, {
+ useHash: true
+ }),
+ ],
+ declarations: [
+ DummyCmp,
+ ],
+ providers: [
+ provideMockStore(),
+ {
+ provide: PureContantService,
+ useValue: dummyPureConstantService
+ },
+ {
+ provide: APP_BASE_HREF,
+ useValue: '/'
+ }
+ ]
+ })
+
+ const mockStore = TestBed.inject(MockStore)
+ mockStore.overrideSelector(viewerStateFetchedTemplatesSelector, ['dummy'])
+ mockStore.overrideSelector(viewerStateFetchedAtlasesSelector, ['foo', 'bar'])
+ })
+
+ afterEach(() => {
+ cvtStateToHashedRoutesSpy.calls.reset()
+ cvtFullRouteToStateSpy.calls.reset()
+ })
+ it('> can be init, and configuration emits allFetchingReady$', () => {
+ const service = TestBed.inject(RouterService)
+ expect(service).toBeTruthy()
+ expect(
+ service['allFetchingReady$']
+ ).toBeObservable(
+ hot('(a|)', {
+ a: true
+ })
+ )
+ })
+
+ describe('> on state set', () => {
+
+ it('> should call cvtStateToHashedRoutes', fakeAsync(() => {
+ cvtStateToHashedRoutesSpy.and.callFake(() => [])
+ const service = TestBed.inject(RouterService)
+ const store = TestBed.inject(MockStore)
+ const fakeState = {
+ foo: 'bar'
+ }
+ store.setState(fakeState)
+ tick(320)
+ expect(cvtStateToHashedRoutesSpy).toHaveBeenCalledWith(fakeState)
+ }))
+ it('> if cvtStateToHashedRoutes throws, should navigate to home', fakeAsync(() => {
+ cvtStateToHashedRoutesSpy.and.callFake(() => {
+ throw new Error(`foo bar`)
+ })
+ const service = TestBed.inject(RouterService)
+ const store = TestBed.inject(MockStore)
+ const fakeState = {
+ foo: 'bar'
+ }
+ store.setState(fakeState)
+ tick(320)
+ location = TestBed.inject(Location)
+ expect(
+ location.path()
+ ).toBe('/')
+
+ }))
+ it('> if cvtStateToHashedRoutes returns, should navigate to expected location', fakeAsync(() => {
+ cvtStateToHashedRoutesSpy.and.callFake(() => {
+ return ['foo', 'bar']
+ })
+ const service = TestBed.inject(RouterService)
+ const store = TestBed.inject(MockStore)
+ const fakeState = {
+ foo: 'bar'
+ }
+ store.setState(fakeState)
+ tick(320)
+ location = TestBed.inject(Location)
+ expect(
+ location.path()
+ ).toBe('/foo/bar')
+ }))
+ })
+
+ describe('> on route change', () => {
+
+
+ describe('> compares new state and previous state', () => {
+
+ it('> calls cvtFullRouteToState', fakeAsync(() => {
+ const fakeParsedState = {
+ bizz: 'buzz'
+ }
+ cvtFullRouteToStateSpy.and.callFake(() => fakeParsedState)
+ cvtStateToHashedRoutesSpy.and.callFake(() => {
+ return ['bizz', 'buzz']
+ })
+ router = TestBed.inject(Router)
+ router.navigate(['foo', 'bar'])
+
+ TestBed.inject(RouterService)
+
+ tick()
+
+ expect(cvtFullRouteToStateSpy).toHaveBeenCalledWith(
+ router.parseUrl('/foo/bar'), {}
+ )
+
+ discardPeriodicTasks()
+
+ }))
+
+ it('> calls cvtStateToHashedRoutes with returned states', fakeAsync(() => {
+ const fakeParsedState = {
+ bizz: 'buzz'
+ }
+ cvtFullRouteToStateSpy.and.callFake(() => fakeParsedState)
+ cvtStateToHashedRoutesSpy.and.callFake(() => {
+ return ['bizz', 'buzz']
+ })
+ router = TestBed.inject(Router)
+ router.navigate(['foo', 'bar'])
+
+ TestBed.inject(RouterService)
+
+ tick()
+
+ expect(cvtStateToHashedRoutesSpy).toHaveBeenCalledWith(fakeParsedState)
+
+ discardPeriodicTasks()
+ }))
+
+ describe('> when cvtStateToHashedRoutes ...', () => {
+ it('> ...throws, should handle elegantly', fakeAsync(() => {
+ const fakeParsedState = {
+ bizz: 'buzz'
+ }
+ cvtFullRouteToStateSpy.and.callFake(() => fakeParsedState)
+ cvtStateToHashedRoutesSpy.and.callFake(() => {
+ throw new Error(`fizz buzz`)
+ })
+ router = TestBed.inject(Router)
+ router.navigate(['foo', 'bar'])
+
+ TestBed.inject(RouterService)
+ const store = TestBed.inject(MockStore)
+ const dispatchSpy = spyOn(store, 'dispatch')
+
+ tick()
+
+ expect(dispatchSpy).toHaveBeenCalled()
+
+ discardPeriodicTasks()
+ }))
+
+ it('> ... returns different value, dispatches', fakeAsync(() => {
+ const fakeParsedState = {
+ bizz: 'buzz'
+ }
+ cvtFullRouteToStateSpy.and.callFake(() => fakeParsedState)
+ cvtStateToHashedRoutesSpy.and.callFake(() => {
+ return ['fizz', 'buzz']
+ })
+ router = TestBed.inject(Router)
+ router.navigate(['foo', 'bar'])
+
+ TestBed.inject(RouterService)
+ const store = TestBed.inject(MockStore)
+ const dispatchSpy = spyOn(store, 'dispatch')
+
+ tick()
+
+ expect(dispatchSpy).toHaveBeenCalled()
+
+ discardPeriodicTasks()
+ }))
+
+ it('> ... returns same value, but firstRenderFlag is true, dispatches', fakeAsync(() => {
+ const fakeParsedState = {
+ bizz: 'buzz'
+ }
+ cvtFullRouteToStateSpy.and.callFake(() => fakeParsedState)
+ cvtStateToHashedRoutesSpy.and.callFake(() => {
+ return ['foo', 'bar']
+ })
+ router = TestBed.inject(Router)
+ router.navigate(['foo', 'bar'])
+
+ TestBed.inject(RouterService)
+ const store = TestBed.inject(MockStore)
+ const dispatchSpy = spyOn(store, 'dispatch')
+
+ tick()
+
+ expect(dispatchSpy).toHaveBeenCalled()
+
+ discardPeriodicTasks()
+ }))
+
+ it('> ... returns same value, but firstRenderFlag is false, does not dispatches', fakeAsync(() => {
+ const fakeParsedState = {
+ bizz: 'buzz'
+ }
+ cvtFullRouteToStateSpy.and.callFake(() => fakeParsedState)
+ cvtStateToHashedRoutesSpy.and.callFake(() => {
+ return ['foo', 'bar']
+ })
+ router = TestBed.inject(Router)
+ router.navigate(['foo', 'bar'])
+
+ const service = TestBed.inject(RouterService)
+ service['firstRenderFlag'] = false
+ const store = TestBed.inject(MockStore)
+ const dispatchSpy = spyOn(store, 'dispatch')
+
+ tick()
+
+ expect(dispatchSpy).not.toHaveBeenCalled()
+
+ discardPeriodicTasks()
+ }))
+ })
+ })
+ })
+ })
+})
diff --git a/src/routerModule/router.service.ts b/src/routerModule/router.service.ts
new file mode 100644
index 000000000..566146194
--- /dev/null
+++ b/src/routerModule/router.service.ts
@@ -0,0 +1,127 @@
+import { Injectable } from "@angular/core";
+import { APP_BASE_HREF } from "@angular/common";
+import { Inject } from "@angular/core";
+import { NavigationEnd, Router } from '@angular/router'
+import { select, Store } from "@ngrx/store";
+import { combineLatest, Observable } from "rxjs";
+import { debounceTime, filter, map, mapTo, shareReplay, switchMapTo, take, tap, withLatestFrom } from "rxjs/operators";
+import { viewerStateFetchedTemplatesSelector } from "src/services/state/viewerState.store.helper";
+import { viewerStateFetchedAtlasesSelector } from "src/services/state/viewerState/selectors";
+import { generalApplyState } from "src/services/stateStore.helper";
+import { PureContantService } from "src/util";
+import { cvtStateToHashedRoutes, cvtFullRouteToState } from "./util";
+
+@Injectable({
+ providedIn: 'root'
+})
+
+export class RouterService {
+
+ private firstRenderFlag = true
+ private allFetchingReady$: Observable<boolean>
+
+ constructor(
+ router: Router,
+ pureConstantService: PureContantService,
+ store$: Store<any>,
+ @Inject(APP_BASE_HREF) baseHref: string
+ ){
+
+ // could be navigation (history api)
+ // could be on init
+ const navEnd$ = router.events.pipe(
+ filter(ev => ev instanceof NavigationEnd),
+ shareReplay(1)
+ )
+
+ navEnd$.subscribe()
+
+ this.allFetchingReady$ = combineLatest([
+ pureConstantService.getTemplateEndpoint$.pipe(
+ filter(arr => !!arr && Array.isArray(arr)),
+ map(arr => arr.length)
+ ),
+ store$.pipe(
+ select(viewerStateFetchedTemplatesSelector),
+ filter(arr => !!arr && Array.isArray(arr)),
+ map(arr => arr.length)
+ ),
+ store$.pipe(
+ select(viewerStateFetchedAtlasesSelector),
+ filter(arr => !!arr && Array.isArray(arr)),
+ map(arr => arr.length)
+ )
+ ]).pipe(
+ filter(([ expNumTmpl, actNumTmpl, actNumAtlas ]) => {
+ return expNumTmpl === actNumTmpl && actNumAtlas === pureConstantService.totalAtlasesLength
+ }),
+ mapTo(true),
+ take(1),
+ shareReplay(1),
+ )
+
+ this.allFetchingReady$.pipe(
+ switchMapTo(
+ navEnd$.pipe(
+ withLatestFrom(store$)
+ )
+ )
+ ).subscribe(([ev, state]: [NavigationEnd, any]) => {
+ const fullPath = ev.urlAfterRedirects
+ const newState = cvtFullRouteToState(router.parseUrl(fullPath), state)
+ let newUrl: any[]
+ try {
+ newUrl = cvtStateToHashedRoutes(newState)
+ } catch (_e) {
+ console.error(`cvtStateToHashedRoutes error`, _e)
+ }
+
+ // NB this is required, as parseUrl seems to decode %3A back to :
+ // resulting in false positive
+ const newRoute = newUrl && router.parseUrl(
+ `/${newUrl.join('/')}`
+ ).toString()
+ const currentRoute = router.routerState.snapshot.url
+
+ // this fn would in principle be invoked every time path changes
+ // We are only interested in when path changes as a result of:
+ // - on open
+ // - on on history
+ // on way to do this is by checking the updated route === current route
+ // above scenarios would result in newRoute !== currentRoute
+ if ( this.firstRenderFlag || newRoute !== currentRoute) {
+ this.firstRenderFlag = false
+ store$.dispatch(
+ generalApplyState({
+ state: newState
+ })
+ )
+ }
+ })
+
+ // TODO this may still be a bit finiky.
+ // we rely on that update of store happens within 160ms
+ // which may or many not be
+ this.allFetchingReady$.pipe(
+ switchMapTo(
+ store$.pipe(
+ debounceTime(160),
+ map(state => {
+ try {
+ return cvtStateToHashedRoutes(state)
+ } catch (e) {
+ return []
+ }
+ })
+ )
+ )
+ ).subscribe(routes => {
+ if (routes.length === 0) {
+ router.navigate([ baseHref ])
+ } else {
+ const joinedRoutes = `/${routes.join('/')}`
+ router.navigateByUrl(joinedRoutes)
+ }
+ })
+ }
+}
diff --git a/src/routerModule/util.ts b/src/routerModule/util.ts
new file mode 100644
index 000000000..70788dc29
--- /dev/null
+++ b/src/routerModule/util.ts
@@ -0,0 +1,396 @@
+import { viewerStateGetSelectedAtlas, viewerStateSelectedParcellationSelector, viewerStateSelectedRegionsSelector, viewerStateSelectedTemplateSelector, viewerStateSelectorNavigation, viewerStateSelectorStandaloneVolumes } from "src/services/state/viewerState/selectors"
+import { encodeNumber, decodeToNumber, separator } from './cipher'
+import { getGetRegionFromLabelIndexId } from 'src/util/fn'
+import { serialiseParcellationRegion } from "common/util"
+import { UrlTree } from "@angular/router"
+import { getShader, PMAP_DEFAULT_CONFIG } from "src/util/constants"
+import { mixNgLayers } from "src/services/state/ngViewerState.store"
+import { PLUGINSTORE_CONSTANTS } from 'src/services/state/pluginState.store'
+import { viewerStateHelperStoreName } from "src/services/state/viewerState.store.helper"
+import { uiStatePreviewingDatasetFilesSelector } from "src/services/state/uiState/selectors"
+import { Component } from "@angular/core"
+
+export const PARSE_ERROR = {
+ TEMPALTE_NOT_SET: 'TEMPALTE_NOT_SET',
+ TEMPLATE_NOT_FOUND: 'TEMPLATE_NOT_FOUND',
+ PARCELLATION_NOT_UPDATED: 'PARCELLATION_NOT_UPDATED',
+}
+
+const endcodePath = (key: string, val: string) => `${key}:${encodeURIComponent(val)}`
+const decodePath = (path: string) => {
+ const re = /^(.*?):(.+)$/.exec(path)
+ if (!re) return null
+ return {
+ key: re[1],
+ val: decodeURIComponent(re[2])
+ }
+}
+
+type TUrlStandaloneVolume = {
+ sv: string // standalone volume
+}
+
+type TUrlAtlas = {
+ a: string // atlas
+ t: string // template
+ p: string // parcellation
+ r?: string // region selected
+}
+
+type TUrlPreviewDs = {
+ dsp: string // dataset preview
+}
+
+type TUrlPlugin = {
+ pl: string // pluginState
+}
+
+type TUrlNav = {
+ ['@']: string // string
+}
+
+type TConditional = Partial<
+ TUrlPreviewDs &
+ TUrlPlugin &
+ TUrlNav
+>
+
+type TUrlPathObj = (TUrlAtlas | TUrlStandaloneVolume) & TConditional
+
+function parseSearchParamForTemplateParcellationRegion(obj: TUrlPathObj, state: any) {
+
+ /**
+ * TODO if search param of either template or parcellation is incorrect, wrong things are searched
+ */
+
+ const templateSelected = (() => {
+ const { fetchedTemplates } = state.viewerState
+
+ const searchedId = obj['t']
+
+ if (!searchedId) { throw new Error(PARSE_ERROR.TEMPALTE_NOT_SET) }
+ const templateToLoad = fetchedTemplates.find(template => (template['@id'] || template['fullId']) === searchedId)
+ if (!templateToLoad) { throw new Error(PARSE_ERROR.TEMPLATE_NOT_FOUND) }
+ return templateToLoad
+ })()
+
+ const parcellationSelected = (() => {
+ const searchedId = obj['p']
+
+ const parcellationToLoad = templateSelected.parcellations.find(parcellation => parcellation['@id'] || parcellation['fullId'] === searchedId)
+ if (!parcellationToLoad) {
+ // catch error
+ }
+ return parcellationToLoad || templateSelected.parcellations[0]
+ })()
+
+ /* selected regions */
+
+ const regionsSelected = (() => {
+
+ // TODO deprecate. Fallback (defaultNgId) (should) already exist
+ // if (!viewerState.parcellationSelected.updated) throw new Error(PARCELLATION_NOT_UPDATED)
+
+ const getRegionFromlabelIndexId = getGetRegionFromLabelIndexId({ parcellation: parcellationSelected })
+ /**
+ * either or both parcellationToLoad and .regions maybe empty
+ */
+
+ const cRegionsSelectedParam = obj['r']
+ if (cRegionsSelectedParam) {
+ try {
+ const json = JSON.parse(cRegionsSelectedParam)
+
+ const selectRegionIds = []
+
+ for (const ngId in json) {
+ const val = json[ngId]
+ const labelIndicies = val.split(separator).map(n => {
+ try {
+ return decodeToNumber(n)
+ } catch (e) {
+ /**
+ * TODO poisonsed encoded char, send error message
+ */
+ return null
+ }
+ }).filter(v => !!v)
+ for (const labelIndex of labelIndicies) {
+ selectRegionIds.push( serialiseParcellationRegion({ ngId, labelIndex }) )
+ }
+ }
+ return selectRegionIds
+ .map(labelIndexId => {
+ const region = getRegionFromlabelIndexId({ labelIndexId })
+ if (!region) {
+ // cb && cb({ type: ID_ERROR, message: `region with id ${labelIndexId} not found, and will be ignored.` })
+ }
+ return region
+ })
+ .filter(r => !!r)
+
+ } catch (e) {
+ /**
+ * parsing cRegionSelected error
+ */
+ // cb && cb({ type: DECODE_CIPHER_ERROR, message: `parsing cRegionSelected error ${e.toString()}` })
+ }
+ }
+ return []
+ })()
+
+ return {
+ templateSelected,
+ parcellationSelected,
+ regionsSelected,
+ }
+}
+
+export const cvtFullRouteToState = (fullPath: UrlTree, state) => {
+
+ if (!fullPath.root.hasChildren()) return state
+ if (!fullPath.root.children['primary']) return state
+
+ const pathFragments = fullPath.root.children['primary'].segments
+ const returnState = JSON.parse(JSON.stringify(state))
+
+ const returnObj: Partial<TUrlPathObj> = {}
+ for (const f of pathFragments) {
+ const { key, val } = decodePath(f.path) || {}
+ if (!key || !val) continue
+ returnObj[key] = val
+ }
+
+ // TODO deprecate
+ // but ensure bkwd compat?
+ const niftiLayers = fullPath.queryParams['niftiLayers']
+ if (niftiLayers) {
+ const layers = niftiLayers
+ .split('__')
+ .map(layer => {
+ return {
+ name : layer,
+ source : `nifti://${layer}`,
+ mixability : 'nonmixable',
+ shader : getShader(PMAP_DEFAULT_CONFIG),
+ } as any
+ })
+ const { ngViewerState } = returnState
+ ngViewerState.layers = mixNgLayers(ngViewerState.layers, layers)
+ }
+ // -- end deprecate
+
+ // logical assignment. Use instead of above after typescript > v4.0.0
+ // returnState['viewerState'] ||= {}
+ if (!returnState['viewerState']) {
+ returnState['viewerState'] = {}
+ }
+ // -- end fix logical assignment
+
+ // nav obj is almost always defined, regardless if standaloneVolume or not
+ const cViewerState = returnObj['@']
+ let parsedNavObj = {}
+ if (cViewerState) {
+ try {
+ const [ cO, cPO, cPZ, cP, cZ ] = cViewerState.split(`${separator}${separator}`)
+ const o = cO.split(separator).map(s => decodeToNumber(s, {float: true}))
+ const po = cPO.split(separator).map(s => decodeToNumber(s, {float: true}))
+ const pz = decodeToNumber(cPZ)
+ const p = cP.split(separator).map(s => decodeToNumber(s))
+ const z = decodeToNumber(cZ)
+ parsedNavObj = {
+ orientation: o,
+ perspectiveOrientation: po,
+ perspectiveZoom: pz,
+ position: p,
+ zoom: z,
+
+ // flag to allow for animation when enabled
+ animation: {},
+ }
+ } catch (_e) {
+ /**
+ * TODO Poisoned encoded char
+ * send error message
+ */
+ }
+ }
+
+ // pluginState should always be defined, regardless if standalone volume or not
+ const pluginStates = returnObj['pl']
+ const { pluginState } = returnState
+ if (pluginStates) {
+ try {
+ const arrPluginStates = JSON.parse(pluginStates)
+ pluginState.initManifests = arrPluginStates.map(url => [PLUGINSTORE_CONSTANTS.INIT_MANIFEST_SRC, url] as [string, string])
+ } catch (_e) {
+ /**
+ * parsing plugin error
+ */
+ }
+ }
+
+ // preview dataset can and should be displayed regardless of standalone volume or not
+ const { uiState } = returnState
+ const stringSearchParam = returnObj['dsp']
+ try {
+ if (stringSearchParam) {
+ const arr = JSON.parse(stringSearchParam) as Array<{datasetId: string, filename: string}>
+ uiState.previewingDatasetFiles = arr.map(({ datasetId, filename }) => {
+ return {
+ datasetId,
+ filename
+ }
+ })
+ }
+ } catch (e) {
+ // parsing previewingDatasetFiles
+ }
+
+ // If sv (standaloneVolume is defined)
+ // only load sv in state
+ // ignore all other params
+ if (!!returnObj['sv']) {
+ try {
+ const parsedArr = JSON.parse(returnObj['sv'])
+ if (!Array.isArray(parsedArr)) throw new Error(`Parsed standalone volumes not of type array`)
+
+ returnState['viewerState']['standaloneVolumes'] = parsedArr
+ returnState['viewerState']['navigation'] = parsedNavObj
+ return returnState
+ } catch (_e) {
+ // if any error occurs, parse rest per normal
+ }
+ }
+
+ try {
+ const { parcellationSelected, regionsSelected, templateSelected } = parseSearchParamForTemplateParcellationRegion(returnObj as TUrlPathObj, state)
+
+ returnState['viewerState']['parcellationSelected'] = parcellationSelected
+ returnState['viewerState']['regionsSelected'] = regionsSelected
+ returnState['viewerState']['templateSelected'] = templateSelected
+
+ returnState['viewerState']['navigation'] = parsedNavObj
+ } catch (e) {
+ // if error, show error on UI?
+ }
+
+ /**
+ * parsing template to get atlasId
+ */
+ (() => {
+
+ const viewreHelperState = returnState[viewerStateHelperStoreName]
+ const { templateSelected, parcellationSelected } = returnState['viewerState']
+ const { fetchedAtlases, ...rest } = viewreHelperState
+
+ const selectedAtlas = fetchedAtlases.find(a => a['templateSpaces'].find(t => t['@id'] === (templateSelected && templateSelected['@id'])))
+
+ const overlayLayer = selectedAtlas && selectedAtlas['parcellations'].find(p => p['@id'] === (parcellationSelected && parcellationSelected['@id']))
+
+ viewreHelperState['selectedAtlasId'] = selectedAtlas && selectedAtlas['@id']
+ viewreHelperState['overlayingAdditionalParcellations'] = (overlayLayer && !overlayLayer['baseLayer'])
+ ? [ overlayLayer ]
+ : []
+ })()
+
+ return returnState
+}
+
+export const cvtStateToHashedRoutes = state => {
+ // TODO check if this causes memleak
+ const selectedAtlas = viewerStateGetSelectedAtlas(state)
+ const selectedTemplate = viewerStateSelectedTemplateSelector(state)
+ const selectedParcellation = viewerStateSelectedParcellationSelector(state)
+ const selectedRegions = viewerStateSelectedRegionsSelector(state)
+ const standaloneVolumes = viewerStateSelectorStandaloneVolumes(state)
+ const navigation = viewerStateSelectorNavigation(state)
+
+ const previewingDatasetFiles = uiStatePreviewingDatasetFilesSelector(state)
+ let dsPrvString: string
+ if (previewingDatasetFiles && Array.isArray(previewingDatasetFiles)) {
+ const dsPrvArr = []
+ const datasetPreviews = (previewingDatasetFiles as {datasetId: string, filename: string}[])
+ for (const preview of datasetPreviews) {
+ dsPrvArr.push(preview)
+ }
+
+ if (dsPrvArr.length > 0) dsPrvString = JSON.stringify(dsPrvArr)
+ }
+
+ let cNavString: string
+ if (navigation) {
+ const { orientation, perspectiveOrientation, perspectiveZoom, position, zoom } = navigation
+ if (orientation && perspectiveOrientation && perspectiveZoom && position && zoom) {
+ cNavString = [
+ orientation.map((n: number) => encodeNumber(n, {float: true})).join(separator),
+ perspectiveOrientation.map(n => encodeNumber(n, {float: true})).join(separator),
+ encodeNumber(Math.floor(perspectiveZoom)),
+ Array.from(position).map((v: number) => Math.floor(v)).map(n => encodeNumber(n)).join(separator),
+ encodeNumber(Math.floor(zoom)),
+ ].join(`${separator}${separator}`)
+ }
+ }
+
+ // encoding selected regions
+ const accumulatorMap = new Map<string, number[]>()
+ for (const region of selectedRegions) {
+ const { ngId, labelIndex } = region
+ const existingEntry = accumulatorMap.get(ngId)
+ if (existingEntry) { existingEntry.push(labelIndex) } else { accumulatorMap.set(ngId, [ labelIndex ]) }
+ }
+ const cRegionObj = {}
+ for (const [key, arr] of accumulatorMap) {
+ cRegionObj[key] = arr.map(n => encodeNumber(n)).join(separator)
+ }
+
+ let routes: TUrlPathObj
+
+ routes = {
+ // for atlas
+ a: selectedAtlas && selectedAtlas['@id'],
+ // for template
+ t: selectedTemplate && (selectedTemplate['@id'] || selectedTemplate['fullId']),
+ // for parcellation
+ p: selectedParcellation && (selectedParcellation['@id'] || selectedParcellation['fullId']),
+ // for regions
+ r: Object.keys(cRegionObj).length > 0 && JSON.stringify(cRegionObj),
+ // nav
+ ['@']: cNavString,
+ // dataset file preview
+ dsp: dsPrvString,
+ }
+
+ /**
+ * if any params needs to overwrite previosu routes, put them here
+ */
+ if (standaloneVolumes && Array.isArray(standaloneVolumes) && standaloneVolumes.length > 0) {
+ routes = {
+ // standalone volumes
+ sv: JSON.stringify(standaloneVolumes),
+ // nav
+ ['@']: cNavString,
+ dsp: dsPrvString
+ }
+ }
+
+ const returnRoutes = []
+ for (const key in routes) {
+ if (!!routes[key]) {
+ returnRoutes.push(
+ endcodePath(key, routes[key])
+ )
+ }
+ }
+ return returnRoutes
+}
+
+@Component({
+ template: ''
+})
+export class DummyCmp{}
+
+export const routes = [{
+ path: '**',
+ component: DummyCmp
+}]
diff --git a/src/services/state/viewerState/selectors.ts b/src/services/state/viewerState/selectors.ts
index 7d71b3083..bd950ac9e 100644
--- a/src/services/state/viewerState/selectors.ts
+++ b/src/services/state/viewerState/selectors.ts
@@ -32,6 +32,11 @@ export const viewerStateSelectedTemplateSelector = createSelector(
viewerState => viewerState['templateSelected']
)
+export const viewerStateSelectorStandaloneVolumes = createSelector(
+ state => state['viewerState'],
+ viewerState => viewerState['standaloneVolumes']
+)
+
/**
* viewerStateSelectedTemplateSelector may have it navigation mutated to allow for initiliasation of viewer at the correct navigation
* in some circumstances, it may be required to get the original navigation object
diff --git a/src/state/stateAggregator.directive.ts b/src/state/stateAggregator.directive.ts
index fdf9bd9b4..62d666662 100644
--- a/src/state/stateAggregator.directive.ts
+++ b/src/state/stateAggregator.directive.ts
@@ -1,10 +1,10 @@
import { Directive } from "@angular/core";
-import { Store } from "@ngrx/store";
+import { NavigationEnd, Router } from "@angular/router";
import { Observable } from "rxjs";
-import { map, debounceTime, shareReplay } from "rxjs/operators";
-import { cvtStateToSearchParam } from "src/atlasViewer/atlasViewer.urlUtil";
+import { filter, map } from "rxjs/operators";
-const jsonVersion = '0.0.1'
+const jsonVersion = '1.0.0'
+// ver 0.0.1 === query param
interface IJsonifiedState {
ver: string
@@ -20,18 +20,16 @@ export class StateAggregator{
public jsonifiedSstate$: Observable<IJsonifiedState>
constructor(
- private store$: Store<any>
+ router: Router
){
- this.jsonifiedSstate$ = this.store$.pipe(
- debounceTime(100),
- map(json => {
- const queryString = cvtStateToSearchParam(json)
+ this.jsonifiedSstate$ = router.events.pipe(
+ filter(ev => ev instanceof NavigationEnd),
+ map((ev: NavigationEnd) => {
return {
ver: jsonVersion,
- queryString: queryString.toString()
+ queryString: ev.urlAfterRedirects
}
- }),
- shareReplay(1)
+ })
)
}
}
--
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