diff --git a/src/res/ext/MNI152.json b/src/res/ext/MNI152.json
index 4ff6635b1263ae0cf56f78c00f762747e866dda6..277c553ad0e9e5ba5bb7e7c6de5c546e1a296452 100644
--- a/src/res/ext/MNI152.json
+++ b/src/res/ext/MNI152.json
@@ -10,9 +10,9 @@
"nehubaConfigURL": "nehubaConfig/MNI152NehubaConfig",
"parcellations": [
{
- "fullId": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579-25-1",
- "@id": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579-25-1",
- "name": "Cytoarchitectonic Maps - v2.5.1",
+ "fullId": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579-25",
+ "@id": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579-25",
+ "name": "Cytoarchitectonic Maps - v2.5",
"auxillaryMeshIndices": [
65535
],
@@ -9835,19512 +9835,6 @@
"_": {
"@src": "https://gin.g-node.org/FZJ-INM1-BDA/20201204_JulichBrainV3_0_hemisphereSplit_metadata/src/eebf8ef90078fb722456eb5e77eb000ae09db776/output/nehubaUI/julich-brain-v3.0-icbm152.json"
}
- },
- {
- "fullId": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579-25",
- "@id": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579-25",
- "name": "Cytoarchitectonic Maps - v2.5",
- "auxillaryMeshIndices": [
- 65535
- ],
- "hasAdditionalViewMode": [],
- "originDatasets": [
- {
- "kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "5249afa7-5e04-4ffd-8039-c3a9231f717c"
- }
- ],
- "properties": {
- "description": "This dataset contains the whole-brain parcellation of the JuBrain Cytoarchitectonic Atlas (Amunts and Zilles, 2015) in the MNI ICBM 2009c Asymmetric as well as the MNI ICBM 152 2009c nonlinear asymmetric reference space. The parcellation is derived from the individual probability maps (PMs) of the cytoarchitectonic regions released in the JuBrain Atlas, that are further combined into a Maximum Probability Map (MPM). The MPM is calculated by considering for each voxel the probability of all cytoarchitectonic areas released in the atlas, and determining the most probable assignment (Eickhoff 2005). Note that methodological improvements and integration of new brain structures may lead to small deviations in earlier released datasets.",
- "publications": [
- {
- "doi": "https://doi.org/10.1038/nrn2776",
- "citation": "Zilles K, Amunts K (2010) Centenary of Brodmann’s map – conception and fate. Nature Reviews Neuroscience 11(2): 139-145 "
- },
- {
- "doi": "https://doi.org/10.1016/j.neuroimage.2007.02.037",
- "citation": "Amunts K, Schleicher A, Zilles K (2007) Cytoarchitecture of the cerebral cortex – more than localization. Neuroimage 37: 1061-1065"
- },
- {
- "doi": "http://dx.doi.org/10.1016/B978-012693019-1/50023-X",
- "citation": "Zilles K, Schleicher A, Palomero-Gallagher N, Amunts K (2002) Quantitative analysis of cyto- and receptor architecture of the human brain. In: /Brain Mapping: The Methods/, J. C. Mazziotta and A. Toga (eds.), USA: Elsevier, 2002, p. 573-602."
- }
- ]
- },
- "regions": [
- {
- "name": "telencephalon",
- "children": [
- {
- "name": "cerebral nuclei",
- "children": [
- {
- "name": "basal forebrain",
- "children": [
- {
- "name": "magnocellular group within septum",
- "children": [
- {
- "name": "Ch 123 (Basal Forebrain)",
- "children": [
- {
- "name": "Ch 123 (Basal Forebrain)",
- "labelIndex": 79,
- "ngId": "ICBM152_V25_LEFT_NG",
- "_": {
- "xml": {
- "name": "Ch 123 (Basal Forebrain)",
- "gray": "79"
- }
- }
- },
- {
- "name": "Ch 123 (Basal Forebrain)",
- "labelIndex": 79,
- "ngId": "ICBM152_V25_RIGHT_NG",
- "_": {
- "xml": {
- "name": "Ch 123 (Basal Forebrain)",
- "gray": "79"
- }
- }
- }
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "Ch 123 (Basal Forebrain)",
- "arealabel": "Ch-123",
- "status": "publicP",
- "labelIndex": "286",
- "doi": "https://doi.org/10.25493/7SEP-P2V",
- "synonyms": [],
- "rgb": null
- }
- }
- }
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "magnocellular group within septum",
- "status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null
- }
- }
- },
- {
- "name": "sublenticular part of basal forebrain",
- "children": [
- {
- "name": "Ch 4 (Basal Forebrain)",
- "children": [
- {
- "name": "Ch 4 (Basal Forebrain)",
- "labelIndex": 13,
- "ngId": "ICBM152_V25_LEFT_NG",
- "_": {
- "xml": {
- "name": "Ch 4 (Basal Forebrain)",
- "gray": "13"
- }
- }
- },
- {
- "name": "Ch 4 (Basal Forebrain)",
- "labelIndex": 13,
- "ngId": "ICBM152_V25_RIGHT_NG",
- "_": {
- "xml": {
- "name": "Ch 4 (Basal Forebrain)",
- "gray": "13"
- }
- }
- }
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "Ch 4 (Basal Forebrain)",
- "arealabel": "Ch-4",
- "status": "publicP",
- "labelIndex": "264",
- "doi": "https://doi.org/10.25493/VZJ5-8WJ",
- "synonyms": [],
- "rgb": null
- }
- }
- }
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "sublenticular part of basal forebrain",
- "status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null
- }
- }
- },
- {
- "name": "magnocellular group within horizontal limb of diagnoal band",
- "children": [
- {
- "name": "Ch 123 (Basal Forebrain)",
- "children": [
- {
- "name": "Ch 123 (Basal Forebrain)",
- "labelIndex": 79,
- "ngId": "ICBM152_V25_LEFT_NG",
- "_": {
- "xml": {
- "name": "Ch 123 (Basal Forebrain)",
- "gray": "79"
- }
- }
- },
- {
- "name": "Ch 123 (Basal Forebrain)",
- "labelIndex": 79,
- "ngId": "ICBM152_V25_RIGHT_NG",
- "_": {
- "xml": {
- "name": "Ch 123 (Basal Forebrain)",
- "gray": "79"
- }
- }
- }
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "Ch 123 (Basal Forebrain)",
- "arealabel": "Ch-123",
- "status": "publicP",
- "labelIndex": "286",
- "doi": "https://doi.org/10.25493/7SEP-P2V",
- "synonyms": [],
- "rgb": null
- }
- }
- }
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "magnocellular group within horizontal limb of diagnoal band",
- "status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null
- }
- }
- }
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "basal forebrain",
- "status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null
- }
- }
- },
- {
- "name": "amygdala",
- "children": [
- {
- "name": "laterobasal group",
- "children": [
- {
- "name": "LB (Amygdala)",
- "children": [
- {
- "name": "LB (Amygdala)",
- "labelIndex": 94,
- "ngId": "ICBM152_V25_LEFT_NG",
- "_": {
- "xml": {
- "name": "LB (Amygdala)",
- "gray": "94"
- }
- }
- },
- {
- "name": "LB (Amygdala)",
- "labelIndex": 94,
- "ngId": "ICBM152_V25_RIGHT_NG",
- "_": {
- "xml": {
- "name": "LB (Amygdala)",
- "gray": "94"
- }
- }
- }
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "LB (Amygdala)",
- "arealabel": "LB",
- "status": "publicP",
- "labelIndex": "187",
- "doi": "https://doi.org/10.25493/C3X0-NV3",
- "synonyms": [],
- "rgb": null
- }
- }
- }
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "laterobasal group",
- "status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null
- }
- }
- },
- {
- "name": "superficial group",
- "children": [
- {
- "name": "CM (Amygdala)",
- "children": [
- {
- "name": "CM (Amygdala)",
- "labelIndex": 44,
- "ngId": "ICBM152_V25_LEFT_NG",
- "_": {
- "xml": {
- "name": "CM (Amygdala)",
- "gray": "44"
- }
- }
- },
- {
- "name": "CM (Amygdala)",
- "labelIndex": 44,
- "ngId": "ICBM152_V25_RIGHT_NG",
- "_": {
- "xml": {
- "name": "CM (Amygdala)",
- "gray": "44"
- }
- }
- }
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "CM (Amygdala)",
- "arealabel": "CM",
- "status": "publicP",
- "labelIndex": "290",
- "doi": "https://doi.org/10.25493/36FR-C95",
- "synonyms": [],
- "rgb": null
- }
- }
- },
- {
- "name": "SF (Amygdala)",
- "children": [
- {
- "name": "SF (Amygdala)",
- "labelIndex": 111,
- "ngId": "ICBM152_V25_LEFT_NG",
- "_": {
- "xml": {
- "name": "SF (Amygdala)",
- "gray": "111"
- }
- }
- },
- {
- "name": "SF (Amygdala)",
- "labelIndex": 110,
- "ngId": "ICBM152_V25_RIGHT_NG",
- "_": {
- "xml": {
- "name": "SF (Amygdala)",
- "gray": "110"
- }
- }
- }
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "SF (Amygdala)",
- "arealabel": "SF",
- "status": "publicP",
- "labelIndex": "185",
- "doi": "https://doi.org/10.25493/WD31-SEA",
- "synonyms": [],
- "rgb": null
- }
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- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "superficial group",
- "status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null
- }
- }
- },
- {
- "name": "fiber masses",
- "children": [
- {
- "name": "VTM (Amygdala)",
- "children": [
- {
- "name": "VTM (Amygdala)",
- "labelIndex": 83,
- "ngId": "ICBM152_V25_LEFT_NG",
- "_": {
- "xml": {
- "name": "VTM (Amygdala)",
- "gray": "83"
- }
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- "name": "VTM (Amygdala)",
- "labelIndex": 83,
- "ngId": "ICBM152_V25_RIGHT_NG",
- "_": {
- "xml": {
- "name": "VTM (Amygdala)",
- "gray": "83"
- }
- }
- }
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "VTM (Amygdala)",
- "arealabel": "VTM",
- "status": "publicP",
- "labelIndex": "228",
- "doi": "https://doi.org/10.25493/99HN-XRE",
- "synonyms": [],
- "rgb": null
- }
- }
- },
- {
- "name": "IF (Amygdala)",
- "children": [
- {
- "name": "IF (Amygdala)",
- "labelIndex": 61,
- "ngId": "ICBM152_V25_LEFT_NG",
- "_": {
- "xml": {
- "name": "IF (Amygdala)",
- "gray": "61"
- }
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- },
- {
- "name": "IF (Amygdala)",
- "labelIndex": 61,
- "ngId": "ICBM152_V25_RIGHT_NG",
- "_": {
- "xml": {
- "name": "IF (Amygdala)",
- "gray": "61"
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- "name": "IF (Amygdala)",
- "arealabel": "IF",
- "status": "publicP",
- "labelIndex": "237",
- "doi": "https://doi.org/10.25493/GWPR-G6K",
- "synonyms": [],
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- },
- {
- "name": "MF (Amygdala)",
- "children": [
- {
- "name": "MF (Amygdala)",
- "labelIndex": 104,
- "ngId": "ICBM152_V25_LEFT_NG",
- "_": {
- "xml": {
- "name": "MF (Amygdala)",
- "gray": "104"
- }
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- "name": "MF (Amygdala)",
- "labelIndex": 104,
- "ngId": "ICBM152_V25_RIGHT_NG",
- "_": {
- "xml": {
- "name": "MF (Amygdala)",
- "gray": "104"
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- "name": "MF (Amygdala)",
- "arealabel": "MF",
- "status": "publicP",
- "labelIndex": "235",
- "doi": "https://doi.org/10.25493/9375-55V",
- "synonyms": [],
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- "_": {
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- "name": "fiber masses",
- "status": null,
- "labelIndex": null,
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- }
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- {
- "name": "centromedial group",
- "children": [
- {
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- "children": [
- {
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- "labelIndex": 44,
- "ngId": "ICBM152_V25_LEFT_NG",
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- "ngId": "ICBM152_V25_RIGHT_NG",
- "_": {
- "xml": {
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- "_": {
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- "name": "cerebral nuclei",
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- "labelIndex": null,
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- },
- {
- "name": "cerebral cortex",
- "children": [
- {
- "name": "parietal lobe",
- "children": [
- {
- "name": "superior parietal lobule",
- "children": [
- {
- "name": "Area 5L (SPL)",
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- "labelIndex": 97,
- "ngId": "ICBM152_V25_LEFT_NG",
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- "status": "publicP",
- "labelIndex": "130",
- "doi": "https://doi.org/10.25493/C1FQ-2F",
- "synonyms": [],
- "rgb": null
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- "name": "Area 7M (SPL)",
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- "labelIndex": 89,
- "ngId": "ICBM152_V25_LEFT_NG",
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- "doi": "https://doi.org/10.25493/F25F-EKW",
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- "kgId": "f3ae17b7-f994-4161-ba60-46a971610167"
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- "_": {
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- "name": "GapMap Temporal-to-Parietal (GapMap)",
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- "ngId": "ICBM152_V24_RIGHT_NG",
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- "ngId": "ICBM152_V24_RIGHT_NG",
- "rgb": [
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- "originDatasets": [
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- "kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "1db74846-624c-4be3-b4cc-71c18e94b119"
- }
- ],
- "_": {
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- "name": "GapMap Frontal-II (GapMap)",
- "id": "501",
- "grayvalue": "90"
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- "dat": {
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- "names": "501 GapMap-Frontal-II"
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- "ngId": "ICBM152_V24_RIGHT_NG",
- "rgb": [
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- "originDatasets": [
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- "kgId": "6e0c6897-7ecf-451e-a9ad-d3e96bcc7b45"
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- "grayvalue": "96"
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- "names": "502 GapMap-Frontal-to-Temporal"
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- "position": [
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- ]
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- "_": {
- "@src": "https://gin.g-node.org/FZJ-INM1-BDA/20201002_JulichBrain-V2_4-ICBM152_ontology/src/fdfca63e85a1fbea4df916cb604b8b1bc2ab0a28/output/nehuba-ui/julich-brain-v2_4-icbm152.json"
- }
},{
"@id": "juelich/iav/atlas/v1.0.0/79cbeaa4ee96d5d3dfe2876e9f74b3dc3d3ffb84304fb9b965b1776563a1069c",
"ngId": "superficial-white-bundle-HCP",
diff --git a/src/res/ext/atlas/atlas_multiLevelHuman.json b/src/res/ext/atlas/atlas_multiLevelHuman.json
index 54b1f28a76d67dfbff51f45162f06c0b33b1f78b..36d9d008da84e634321e63595bf02760502602ac 100644
--- a/src/res/ext/atlas/atlas_multiLevelHuman.json
+++ b/src/res/ext/atlas/atlas_multiLevelHuman.json
@@ -8,18 +8,10 @@
"name": "MNI 152 ICBM 2009c Nonlinear Asymmetric",
"displayName": "ICBM 152 2009c Nonlinear Asymmetric",
"availableIn": [
- {
- "@id": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579-25-1",
- "name": "Cytoarchitectonic maps - v2.5.1"
- },
{
"@id": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579-25",
"name": "Cytoarchitectonic maps - v2.5"
},
- {
- "@id": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579",
- "name": "Cytoarchitectonic maps - v2.4"
- },
{
"@id": "juelich/iav/atlas/v1.0.0/8",
"name": "Cytoarchitectonic Maps - v1.18"
@@ -63,18 +55,10 @@
"@id": "minds/core/referencespace/v1.0.0/7f39f7be-445b-47c0-9791-e971c0b6d992",
"name": "MNI Colin 27",
"availableIn": [
- {
- "@id": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579-25-1",
- "name": "Cytoarchitectonic maps - v2.5.1"
- },
{
"@id": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579-25",
"name": "Cytoarchitectonic maps - v2.5"
},
- {
- "@id": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579",
- "name": "Cytoarchitectonic maps - v2.4"
- },
{
"@id": "juelich/iav/atlas/v1.0.0/8",
"name": "Cytoarchitectonic Maps - v1.18"
@@ -106,7 +90,7 @@
"name": "Cytoarchitectonic Maps - v1.18",
"baseLayer": true,
"@version": {
- "@next": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579",
+ "@next": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579-25",
"@this": "juelich/iav/atlas/v1.0.0/8",
"name": "v1.18",
"@previous": null
@@ -145,68 +129,14 @@
}
]
},
- {
- "@id": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579-25-1",
- "name": "Cytoarchitectonic maps",
- "baseLayer": true,
- "@version": {
- "@next": null,
- "@this": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579-25-1",
- "name": "v2.5.1",
- "@previous": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579-25"
- },
- "availableIn": [
- {
- "@id": "minds/core/referencespace/v1.0.0/dafcffc5-4826-4bf1-8ff6-46b8a31ff8e2",
- "name": "MNI 152 ICBM 2009c Nonlinear Asymmetric",
- "originalDatasetFormats": [{
- "name": "probability map"
- }]
- },
- {
- "@id": "minds/core/referencespace/v1.0.0/7f39f7be-445b-47c0-9791-e971c0b6d992",
- "name": "MNI Colin 27",
- "originalDatasetFormats": [{
- "name": "probability map"
- }]
- }
- ]
- },
{
"@id": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579-25",
"name": "Cytoarchitectonic maps",
"baseLayer": true,
"@version": {
- "@next": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579-25-1",
+ "@next": null,
"@this": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579-25",
"name": "v2.5",
- "@previous": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579"
- },
- "availableIn": [
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- "@id": "minds/core/referencespace/v1.0.0/dafcffc5-4826-4bf1-8ff6-46b8a31ff8e2",
- "name": "MNI 152 ICBM 2009c Nonlinear Asymmetric",
- "originalDatasetFormats": [{
- "name": "probability map"
- }]
- },
- {
- "@id": "minds/core/referencespace/v1.0.0/7f39f7be-445b-47c0-9791-e971c0b6d992",
- "name": "MNI Colin 27",
- "originalDatasetFormats": [{
- "name": "probability map"
- }]
- }
- ]
- },
- {
- "@id": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579",
- "name": "Cytoarchitectonic maps",
- "baseLayer": true,
- "@version": {
- "@next": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579-25",
- "@this": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579",
- "name": "v2.4",
"@previous": "juelich/iav/atlas/v1.0.0/8"
},
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diff --git a/src/res/ext/colin.json b/src/res/ext/colin.json
index 615812921d7a5b3b043375cdfa774b9cc287134b..5afb7811358cb131d5ef252b35d50e40d87ce484 100644
--- a/src/res/ext/colin.json
+++ b/src/res/ext/colin.json
@@ -9,9 +9,9 @@
"nehubaConfigURL": "nehubaConfig/colinNehubaConfig",
"parcellations": [
{
- "fullId": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579-25-1",
- "@id": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579-25-1",
- "name": "Cytoarchitectonic Maps - v2.5.1",
+ "fullId": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579-25",
+ "@id": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579-25",
+ "name": "Cytoarchitectonic Maps - v2.5",
"auxillaryMeshIndices": [
65535
],
@@ -9834,19512 +9834,6 @@
"_": {
"@src": "https://gin.g-node.org/FZJ-INM1-BDA/20201204_JulichBrainV3_0_hemisphereSplit_metadata/src/eebf8ef90078fb722456eb5e77eb000ae09db776/output/nehubaUI/julich-brain-v3.0-colin.json"
}
- },
- {
- "fullId": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579-25",
- "@id": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579-25",
- "name": "Cytoarchitectonic Maps - v2.5",
- "auxillaryMeshIndices": [
- 65535
- ],
- "hasAdditionalViewMode": [],
- "originDatasets": [
- {
- "kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "5249afa7-5e04-4ffd-8039-c3a9231f717c"
- }
- ],
- "properties": {
- "description": "This dataset contains the whole-brain parcellation of the JuBrain Cytoarchitectonic Atlas (Amunts and Zilles, 2015) in the MNI Colin 27 as well as the MNI ICBM 152 2009c nonlinear asymmetric reference space. The parcellation is derived from the individual probability maps (PMs) of the cytoarchitectonic regions released in the JuBrain Atlas, that are further combined into a Maximum Probability Map (MPM). The MPM is calculated by considering for each voxel the probability of all cytoarchitectonic areas released in the atlas, and determining the most probable assignment (Eickhoff 2005). Note that methodological improvements and integration of new brain structures may lead to small deviations in earlier released datasets.",
- "publications": [
- {
- "doi": "https://doi.org/10.1038/nrn2776",
- "citation": "Zilles K, Amunts K (2010) Centenary of Brodmann’s map – conception and fate. Nature Reviews Neuroscience 11(2): 139-145 "
- },
- {
- "doi": "https://doi.org/10.1016/j.neuroimage.2007.02.037",
- "citation": "Amunts K, Schleicher A, Zilles K (2007) Cytoarchitecture of the cerebral cortex – more than localization. Neuroimage 37: 1061-1065"
- },
- {
- "doi": "http://dx.doi.org/10.1016/B978-012693019-1/50023-X",
- "citation": "Zilles K, Schleicher A, Palomero-Gallagher N, Amunts K (2002) Quantitative analysis of cyto- and receptor architecture of the human brain. In: /Brain Mapping: The Methods/, J. C. Mazziotta and A. Toga (eds.), USA: Elsevier, 2002, p. 573-602."
- }
- ]
- },
- "regions": [
- {
- "name": "telencephalon",
- "children": [
- {
- "name": "cerebral nuclei",
- "children": [
- {
- "name": "basal forebrain",
- "children": [
- {
- "name": "magnocellular group within septum",
- "children": [
- {
- "name": "Ch 123 (Basal Forebrain)",
- "children": [
- {
- "name": "Ch 123 (Basal Forebrain)",
- "labelIndex": 79,
- "ngId": "COLIN_V25_LEFT_NG",
- "_": {
- "xml": {
- "name": "Ch 123 (Basal Forebrain)",
- "gray": "79"
- }
- }
- },
- {
- "name": "Ch 123 (Basal Forebrain)",
- "labelIndex": 79,
- "ngId": "COLIN_V25_RIGHT_NG",
- "_": {
- "xml": {
- "name": "Ch 123 (Basal Forebrain)",
- "gray": "79"
- }
- }
- }
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "Ch 123 (Basal Forebrain)",
- "arealabel": "Ch-123",
- "status": "publicP",
- "labelIndex": "286",
- "doi": "https://doi.org/10.25493/7SEP-P2V",
- "synonyms": [],
- "rgb": null
- }
- }
- }
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "magnocellular group within septum",
- "status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null
- }
- }
- },
- {
- "name": "sublenticular part of basal forebrain",
- "children": [
- {
- "name": "Ch 4 (Basal Forebrain)",
- "children": [
- {
- "name": "Ch 4 (Basal Forebrain)",
- "labelIndex": 13,
- "ngId": "COLIN_V25_LEFT_NG",
- "_": {
- "xml": {
- "name": "Ch 4 (Basal Forebrain)",
- "gray": "13"
- }
- }
- },
- {
- "name": "Ch 4 (Basal Forebrain)",
- "labelIndex": 13,
- "ngId": "COLIN_V25_RIGHT_NG",
- "_": {
- "xml": {
- "name": "Ch 4 (Basal Forebrain)",
- "gray": "13"
- }
- }
- }
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "Ch 4 (Basal Forebrain)",
- "arealabel": "Ch-4",
- "status": "publicP",
- "labelIndex": "264",
- "doi": "https://doi.org/10.25493/VZJ5-8WJ",
- "synonyms": [],
- "rgb": null
- }
- }
- }
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "sublenticular part of basal forebrain",
- "status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null
- }
- }
- },
- {
- "name": "magnocellular group within horizontal limb of diagnoal band",
- "children": [
- {
- "name": "Ch 123 (Basal Forebrain)",
- "children": [
- {
- "name": "Ch 123 (Basal Forebrain)",
- "labelIndex": 79,
- "ngId": "COLIN_V25_LEFT_NG",
- "_": {
- "xml": {
- "name": "Ch 123 (Basal Forebrain)",
- "gray": "79"
- }
- }
- },
- {
- "name": "Ch 123 (Basal Forebrain)",
- "labelIndex": 79,
- "ngId": "COLIN_V25_RIGHT_NG",
- "_": {
- "xml": {
- "name": "Ch 123 (Basal Forebrain)",
- "gray": "79"
- }
- }
- }
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "Ch 123 (Basal Forebrain)",
- "arealabel": "Ch-123",
- "status": "publicP",
- "labelIndex": "286",
- "doi": "https://doi.org/10.25493/7SEP-P2V",
- "synonyms": [],
- "rgb": null
- }
- }
- }
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "magnocellular group within horizontal limb of diagnoal band",
- "status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null
- }
- }
- }
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "basal forebrain",
- "status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null
- }
- }
- },
- {
- "name": "amygdala",
- "children": [
- {
- "name": "laterobasal group",
- "children": [
- {
- "name": "LB (Amygdala)",
- "children": [
- {
- "name": "LB (Amygdala)",
- "labelIndex": 94,
- "ngId": "COLIN_V25_LEFT_NG",
- "_": {
- "xml": {
- "name": "LB (Amygdala)",
- "gray": "94"
- }
- }
- },
- {
- "name": "LB (Amygdala)",
- "labelIndex": 94,
- "ngId": "COLIN_V25_RIGHT_NG",
- "_": {
- "xml": {
- "name": "LB (Amygdala)",
- "gray": "94"
- }
- }
- }
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "LB (Amygdala)",
- "arealabel": "LB",
- "status": "publicP",
- "labelIndex": "187",
- "doi": "https://doi.org/10.25493/C3X0-NV3",
- "synonyms": [],
- "rgb": null
- }
- }
- }
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "laterobasal group",
- "status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null
- }
- }
- },
- {
- "name": "superficial group",
- "children": [
- {
- "name": "CM (Amygdala)",
- "children": [
- {
- "name": "CM (Amygdala)",
- "labelIndex": 44,
- "ngId": "COLIN_V25_LEFT_NG",
- "_": {
- "xml": {
- "name": "CM (Amygdala)",
- "gray": "44"
- }
- }
- },
- {
- "name": "CM (Amygdala)",
- "labelIndex": 44,
- "ngId": "COLIN_V25_RIGHT_NG",
- "_": {
- "xml": {
- "name": "CM (Amygdala)",
- "gray": "44"
- }
- }
- }
- ],
- "_": {
- "julichbrain-ontology_25.json": {
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- "arealabel": "CM",
- "status": "publicP",
- "labelIndex": "290",
- "doi": "https://doi.org/10.25493/36FR-C95",
- "synonyms": [],
- "rgb": null
- }
- }
- },
- {
- "name": "SF (Amygdala)",
- "children": [
- {
- "name": "SF (Amygdala)",
- "labelIndex": 110,
- "ngId": "COLIN_V25_LEFT_NG",
- "_": {
- "xml": {
- "name": "SF (Amygdala)",
- "gray": "110"
- }
- }
- },
- {
- "name": "SF (Amygdala)",
- "labelIndex": 110,
- "ngId": "COLIN_V25_RIGHT_NG",
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