diff --git a/deploy/datasets/index.js b/deploy/datasets/index.js
index 0e884865bde8479f96771220ec0d6e75d06e9e3c..420a2d251539240302c3e472dba1bf95f045ad5f 100644
--- a/deploy/datasets/index.js
+++ b/deploy/datasets/index.js
@@ -120,15 +120,17 @@ datasetsRouter.post("/downloadParcellationThemself", (req,res, next) => {
var zip = new JSZip();
- zip.file("Publications.txt", req.body['publicationsText'])
+ zip.file("credits.txt", req.body['publicationsText'])
zip.file("Terms of use.txt", termsOfUse)
//ToDo: Need to download files dynamicly. Nii folder should remove
- if (req.body['fileName'].includes("JuBrain Cytoarchitectonic Atlas")) {
+ if (req.body['niiFiles']) {
var nii = zip.folder("nifti")
- nii.file('jubrain-max-pmap-v22c_space-mnicolin27.nii', fs.readFileSync(path.join(__dirname, 'nii') + '/' + 'jubrain-max-pmap-v22c_space-mnicolin27.nii'))
+ req.body['niiFiles'].forEach(file => {
+ nii.file(file['file'], fs.readFileSync(path.join(__dirname, 'nii') + '/' + file['file']))
+ })
}
zip.generateAsync({type:"base64"})
diff --git a/src/atlasViewer/atlasViewer.component.ts b/src/atlasViewer/atlasViewer.component.ts
index 4da6ccceeb0dc86bf906afde651fc022e53da50d..e5255e8182643a782aecc7d01718c077c399230c 100644
--- a/src/atlasViewer/atlasViewer.component.ts
+++ b/src/atlasViewer/atlasViewer.component.ts
@@ -21,6 +21,7 @@ import { AGREE_COOKIE, AGREE_KG_TOS, SHOW_KG_TOS } from "src/services/state/uiSt
import { TabsetComponent } from "ngx-bootstrap/tabs";
import { ToastService } from "src/services/toastService.service";
import { ZipFileDownloadService } from "src/services/zipFileDownload.service";
+import {forEach} from "@angular/router/src/utils/collection";
@Component({
selector: 'atlas-viewer',
@@ -92,6 +93,8 @@ export class AtlasViewer implements OnDestroy, OnInit, AfterViewInit {
handleToast
tPublication
pPublication
+ downloadingProcess = false
+ niiFileSize = 0
get toggleMessage(){
return this.constantsService.toggleMessage
@@ -221,6 +224,8 @@ export class AtlasViewer implements OnDestroy, OnInit, AfterViewInit {
this.subscriptions.push(
this.selectedParcellation$.subscribe(parcellation => {
this.selectedParcellation = parcellation
+ this.niiFileSize = 0
+
if (this.selectedTemplate && this.selectedParcellation) {
if (this.selectedTemplate['properties'] && this.selectedTemplate['properties']['publications']) {
@@ -233,6 +238,12 @@ export class AtlasViewer implements OnDestroy, OnInit, AfterViewInit {
} else {
this.pPublication = null
}
+ if(this.selectedParcellation['properties'] && this.selectedParcellation['properties']['nifty']) {
+ this.selectedParcellation['properties']['nifty'].forEach(nii => {
+ this.niiFileSize += nii['size']
+ })
+ }
+
} else {
this.tPublication = null
this.pPublication = null
@@ -247,7 +258,6 @@ export class AtlasViewer implements OnDestroy, OnInit, AfterViewInit {
this.handleToast = this.toastService.showToast(this.publications, {
timeout: 7000
})
-
}
})
)
@@ -256,6 +266,8 @@ export class AtlasViewer implements OnDestroy, OnInit, AfterViewInit {
}
downloadPublications() {
+ this.downloadingProcess = true
+
const fileName = this.selectedTemplate.name + ' - ' + this.selectedParcellation.name
let publicationsText = ''
@@ -274,7 +286,12 @@ export class AtlasViewer implements OnDestroy, OnInit, AfterViewInit {
});
}
- this.zipFileDownloadService.downloadZip(publicationsText, fileName)
+ this.zipFileDownloadService.downloadZip(
+ publicationsText,
+ fileName,
+ this.selectedParcellation['properties'] && this.selectedParcellation['properties']['nifty']? this.selectedParcellation['properties']['nifty'] : 0).subscribe(data => {
+ this.downloadingProcess = false
+ })
publicationsText = ''
}
diff --git a/src/atlasViewer/atlasViewer.template.html b/src/atlasViewer/atlasViewer.template.html
index 955002822143ff47752603c3f963e7b81a75c90a..474312047f0dfc309b02a47c0ddab6e4bb95f2b9 100644
--- a/src/atlasViewer/atlasViewer.template.html
+++ b/src/atlasViewer/atlasViewer.template.html
@@ -287,7 +287,11 @@
<div class="download-buttons-panel">
<button mat-raised-button color="primary" class="downloadPublications" (click)="downloadPublications()">Explore <i class="fas fa-external-link-alt"></i></button>
- <button mat-raised-button color="primary" class="downloadPublications" (click)="downloadPublications()">Download <i class="fas fa-download"></i></button>
+ <button mat-raised-button color="primary" class="downloadPublications" (click)="downloadPublications()" [disabled] = "downloadingProcess" >
+ Download
+ <span *ngIf="niiFileSize > 0">(.nii {{niiFileSize/10000 | number:'.1-2'}} Mb) </span>
+ <i class="fas" [ngClass]="!downloadingProcess? 'fa-download' :'fa-spinner fa-pulse'"></i>
+ </button>
</div>
</div>
</ng-template>
\ No newline at end of file
diff --git a/src/components/radiolist/radiolist.component.ts b/src/components/radiolist/radiolist.component.ts
index 808e15d664a7941c139b89772c0f6dc2cd36ed40..109cda7a557234e74fe6d819b826edaf6f6a474b 100644
--- a/src/components/radiolist/radiolist.component.ts
+++ b/src/components/radiolist/radiolist.component.ts
@@ -8,22 +8,22 @@ import { ZipFileDownloadService } from "src/services/zipFileDownload.service";
styleUrls: [
'./radiolist.style.css'
],
- // styles: [
- // `
- // ul > li.selected > .textSpan:before
- // {
- // content: '\u2022';
- // width : 1em;
- // display:inline-block;
- // }
- // ul > li:not(.selected) > .textSpan:before
- // {
- // content: ' ';
- // width : 1em;
- // display:inline-block;
- // }
- // `
- // ],
+ styles: [
+ // `
+ // ul > li.selected > .textSpan:before
+ // {
+ // content: '\u2022';
+ // width : 1em;
+ // display:inline-block;
+ // }
+ // ul > li:not(.selected) > .textSpan:before
+ // {
+ // content: ' ';
+ // width : 1em;
+ // display:inline-block;
+ // }
+ // `
+ ],
changeDetection: ChangeDetectionStrategy.OnPush
})
@@ -50,12 +50,21 @@ export class RadioList{
@ViewChild('publicationTemplate') publicationTemplate: TemplateRef<any>
+ downloadingProcess = false
handleToast
+ niiFileSize = 0
constructor(private toastService: ToastService,
private zipFileDownloadService: ZipFileDownloadService) {}
showToast(item) {
+ this.niiFileSize = 0
+ if(item['properties']['nifty']) {
+ item['properties']['nifty'].forEach(nii => {
+ this.niiFileSize += nii['size']
+ })
+ }
+
if (this.handleToast) {
this.handleToast()
this.handleToast = null
@@ -63,18 +72,20 @@ export class RadioList{
this.handleToast = this.toastService.showToast(this.publicationTemplate, {
timeout: 7000
})
-
}
downloadPublications(item) {
- console.log(item['properties']['publications'])
+ this.downloadingProcess = true
+
const filename = item['name']
let publicationsText = item['name'] + ' Publications:\r\n'
item['properties']['publications'].forEach((p, i) => {
publicationsText += '\t' + (i+1) + '. ' + p['citation'] + ' - ' + p['doi'] + '\r\n'
});
- this.zipFileDownloadService.downloadZip(publicationsText, filename)
+ this.zipFileDownloadService.downloadZip(publicationsText, filename, item['properties']['nifty']? item['properties']['nifty'] : 0).subscribe(data => {
+ this.downloadingProcess = false
+ })
publicationsText = ''
}
diff --git a/src/components/radiolist/radiolist.template.html b/src/components/radiolist/radiolist.template.html
index 1dce33c86f9832caeb706f9be4a4ea29147fa3a8..617e9801ff206b5f68ddf6a5f3fe11ab932b73b3 100644
--- a/src/components/radiolist/radiolist.template.html
+++ b/src/components/radiolist/radiolist.template.html
@@ -26,17 +26,21 @@
</span>
-<ng-template #publicationTemplate>
- <div *ngIf="input['properties'] && input['properties']['publications']" class="timerToast">
+<ng-template #publicationTemplate *ngIf="input['properties'] && input['properties']['publications']">
+ <div class="timerToast">
<p>{{input['name']}}</p>
<p class="textPartInPublications">{{input['properties']['description']}}</p>
- <p>{{input['name']}} Publication(s)</p>
+ <p>Publication(s)</p>
<div *ngFor="let p of input['properties']['publications']" class="textPartInPublications">
<a [href]="p['doi']" target="_blank">{{p['citation']}}</a>
</div>
<div class="download-buttons-panel">
- <button mat-raised-button color="primary" class="downloadPublications" (click)="downloadPublications()">Explore <i class="fas fa-external-link-alt"></i></button>
- <button mat-raised-button color="primary" class="downloadPublications" (click)="downloadPublications()">Download <i class="fas fa-download"></i></button>
+ <button mat-raised-button color="primary" class="downloadPublications" (click)="downloadPublications(input)">Explore <i class="fas fa-external-link-alt"></i></button>
+ <button mat-raised-button color="primary" class="downloadPublications" (click)="downloadPublications(input)" [disabled] = "downloadingProcess" >
+ Download
+ <span *ngIf="niiFileSize > 0">(.nii {{niiFileSize/10000 | number:'.1-2'}} Mb) </span>
+ <i class="fas" [ngClass]="!downloadingProcess? 'fa-download' :'fa-spinner fa-pulse'"></i>
+ </button>
</div>
</div>
</ng-template>
diff --git a/src/res/ext/MNI152.json b/src/res/ext/MNI152.json
index e17ae936b1d5b6012d0510d5ae7326931eb1efc1..b018dd5c8c8ee3e63a6b90cc75b0e50e87918b13 100644
--- a/src/res/ext/MNI152.json
+++ b/src/res/ext/MNI152.json
@@ -1 +1 @@
-{"name":"MNI 152 ICBM 2009c Nonlinear Asymmetric","type":"template","species":"Human","useTheme":"dark","ngId":"mni152","nehubaConfigURL":"nehubaConfig/MNI152NehubaConfig","parcellations":[{"name":"JuBrain Cytoarchitectonic Atlas","properties":{"version":"1.0","description":"not yet","publications":[]},"regions":[{"name":"telencephalon","status":null,"labelIndex":null,"synonyms":[],"rgb":null,"children":[{"name":"cerebral nuclei","status":null,"labelIndex":null,"synonyms":[],"rgb":null,"children":[{"name":"basal forebrain","status":null,"labelIndex":null,"synonyms":[],"rgb":null,"children":[{"name":"magnocellular group within septum","status":null,"labelIndex":null,"synonyms":[],"rgb":null,"children":[{"name":"Ch 123 (Basal Forebrain)","arealabel":"Ch-123","status":"publicP","labelIndex":null,"synonyms":[],"rgb":[124,233,167],"children":[{"name":"Ch 123 (Basal Forebrain) - left hemisphere","rgb":[124,233,167],"labelIndex":286,"ngId":"jubrain v17 left","children":[]},{"name":"Ch 123 (Basal Forebrain) - right hemisphere","rgb":[124,233,167],"ngId":"jubrain v17 right","labelIndex":286,"children":[]}]}]},{"name":"sublenticular part of basal forebrain","status":null,"labelIndex":null,"synonyms":[],"rgb":null,"children":[{"name":"Ch 4 (Basal Forebrain)","arealabel":"Ch-4","status":"publicP","labelIndex":null,"synonyms":[],"rgb":[116,243,12],"children":[{"name":"Ch 4 (Basal Forebrain) - left hemisphere","rgb":[116,243,12],"labelIndex":264,"ngId":"jubrain v17 left","children":[]},{"name":"Ch 4 (Basal Forebrain) - right hemisphere","rgb":[116,243,12],"ngId":"jubrain v17 right","labelIndex":264,"children":[]}]}]},{"name":"magnocellular group within horizontal limb of diagnoal band","status":null,"labelIndex":null,"synonyms":[],"rgb":null,"children":[{"name":"Ch 123 (Basal Forebrain)","arealabel":"Ch-123","status":"publicP","labelIndex":null,"synonyms":[],"rgb":[124,233,167],"children":[{"name":"Ch 123 (Basal Forebrain) - left hemisphere","rgb":[124,233,167],"labelIndex":286,"ngId":"jubrain v17 left","children":[]},{"name":"Ch 123 (Basal Forebrain) - right hemisphere","rgb":[124,233,167],"ngId":"jubrain v17 right","labelIndex":286,"children":[]}]}]}]},{"name":"amygdala","status":null,"labelIndex":null,"synonyms":[],"rgb":null,"children":[{"name":"laterobasal group","status":null,"labelIndex":null,"synonyms":[],"rgb":null,"children":[{"name":"LB (Amygdala)","arealabel":"LB","status":"publicP","labelIndex":null,"synonyms":[],"rgb":[188,16,222],"children":[{"name":"LB (Amygdala) - left hemisphere","rgb":[188,16,222],"labelIndex":187,"ngId":"jubrain v17 left","children":[]},{"name":"LB (Amygdala) - right hemisphere","rgb":[188,16,222],"ngId":"jubrain v17 right","labelIndex":187,"children":[]}]}]},{"name":"superficial group","status":null,"labelIndex":null,"synonyms":[],"rgb":null,"children":[{"name":"CM (Amygdala)","arealabel":"CM","status":"publicP","labelIndex":null,"synonyms":[],"rgb":[102,180,202],"children":[{"name":"CM (Amygdala) - left hemisphere","rgb":[102,180,202],"labelIndex":22,"ngId":"jubrain v17 left","children":[]},{"name":"CM (Amygdala) - right hemisphere","rgb":[102,180,202],"ngId":"jubrain v17 right","labelIndex":22,"children":[]}]},{"name":"SF (Amygdala)","arealabel":"SF","status":"publicP","labelIndex":null,"synonyms":[],"rgb":[18,168,22],"children":[{"name":"SF (Amygdala) - left hemisphere","rgb":[18,168,22],"labelIndex":186,"ngId":"jubrain v17 left","children":[]},{"name":"SF (Amygdala) - right hemisphere","rgb":[18,168,22],"ngId":"jubrain v17 right","labelIndex":186,"children":[]}]}]},{"name":"fiber masses","status":null,"labelIndex":null,"synonyms":[],"rgb":null,"children":[{"name":"MF (Amygdala)","arealabel":"MF","status":"publicP","labelIndex":null,"synonyms":[],"rgb":[190,200,9],"children":[{"name":"MF (Amygdala) - left hemisphere","rgb":[190,200,9],"labelIndex":235,"ngId":"jubrain v17 left","children":[]},{"name":"MF (Amygdala) - right hemisphere","rgb":[190,200,9],"ngId":"jubrain v17 right","labelIndex":235,"children":[]}]},{"name":"VTM (Amygdala)","arealabel":"VTM","status":"publicP","labelIndex":null,"synonyms":[],"rgb":[89,178,185],"children":[{"name":"VTM (Amygdala) - left hemisphere","rgb":[89,178,185],"labelIndex":228,"ngId":"jubrain v17 left","children":[]},{"name":"VTM (Amygdala) - right hemisphere","rgb":[89,178,185],"ngId":"jubrain v17 right","labelIndex":228,"children":[]}]},{"name":"IF (Amygdala)","arealabel":"IF","status":"publicP","labelIndex":null,"synonyms":[],"rgb":[120,190,129],"children":[{"name":"IF (Amygdala) - left hemisphere","rgb":[120,190,129],"labelIndex":237,"ngId":"jubrain v17 left","children":[]},{"name":"IF (Amygdala) - right hemisphere","rgb":[120,190,129],"ngId":"jubrain v17 right","labelIndex":237,"children":[]}]}]},{"name":"centromedial group","status":null,"labelIndex":null,"synonyms":[],"rgb":null,"children":[{"name":"CM (Amygdala)","arealabel":"CM","status":"publicP","labelIndex":null,"synonyms":[],"rgb":[89,4,190],"children":[{"name":"CM (Amygdala) - left hemisphere","rgb":[89,4,190],"labelIndex":16,"ngId":"jubrain v17 left","children":[]},{"name":"CM (Amygdala) - right hemisphere","rgb":[89,4,190],"ngId":"jubrain v17 right","labelIndex":16,"children":[]}]},{"name":"CM (Amygdala)","arealabel":"CM","status":"publicP","labelIndex":null,"synonyms":[],"rgb":[9,120,220],"children":[{"name":"CM (Amygdala) - left hemisphere","rgb":[9,120,220],"labelIndex":21,"ngId":"jubrain v17 left","children":[]},{"name":"CM (Amygdala) - right hemisphere","rgb":[9,120,220],"ngId":"jubrain v17 right","labelIndex":21,"children":[]}]}]}]}]},{"name":"cerebral cortex","status":null,"labelIndex":null,"synonyms":[],"rgb":null,"children":[{"name":"parietal lobe","status":null,"labelIndex":null,"synonyms":[],"rgb":null,"children":[{"name":"superior parietal lobule","status":null,"labelIndex":null,"synonyms":[],"rgb":null,"children":[{"name":"Area 7P (SPL)","arealabel":"Area-7P","status":"publicP","labelIndex":null,"synonyms":[],"rgb":[52,20,106],"children":[{"name":"Area 7P (SPL) - left hemisphere","rgb":[52,20,106],"labelIndex":208,"ngId":"jubrain v17 left","children":[]},{"name":"Area 7P (SPL) - right hemisphere","rgb":[52,20,106],"ngId":"jubrain v17 right","labelIndex":208,"children":[]}]},{"name":"Area 5M (SPL)","arealabel":"Area-5M","status":"publicP","labelIndex":null,"synonyms":[],"rgb":[225,245,76],"children":[{"name":"Area 5M (SPL) - left hemisphere","rgb":[225,245,76],"labelIndex":131,"ngId":"jubrain v17 left","children":[]},{"name":"Area 5M (SPL) - right hemisphere","rgb":[225,245,76],"ngId":"jubrain v17 right","labelIndex":131,"children":[]}]},{"name":"Area 7PC (SPL)","arealabel":"Area-7PC","status":"publicP","labelIndex":null,"synonyms":[],"rgb":[252,89,28],"children":[{"name":"Area 7PC (SPL) - left hemisphere","rgb":[252,89,28],"labelIndex":132,"ngId":"jubrain v17 left","children":[]},{"name":"Area 7PC (SPL) - right hemisphere","rgb":[252,89,28],"ngId":"jubrain v17 right","labelIndex":132,"children":[]}]},{"name":"Area 5L (SPL)","arealabel":"Area-5L","status":"publicP","labelIndex":null,"synonyms":[],"rgb":[184,185,58],"children":[{"name":"Area 5L (SPL) - left hemisphere","rgb":[184,185,58],"labelIndex":130,"ngId":"jubrain v17 left","children":[]},{"name":"Area 5L (SPL) - right hemisphere","rgb":[184,185,58],"ngId":"jubrain v17 right","labelIndex":130,"children":[]}]},{"name":"Area 7M (SPL)","arealabel":"Area-7M","status":"publicP","labelIndex":null,"synonyms":[],"rgb":[205,61,236],"children":[{"name":"Area 7M (SPL) - left hemisphere","rgb":[205,61,236],"labelIndex":135,"ngId":"jubrain v17 left","children":[]},{"name":"Area 7M (SPL) - right hemisphere","rgb":[205,61,236],"ngId":"jubrain v17 right","labelIndex":135,"children":[]}]},{"name":"Area 7A (SPL)","arealabel":"Area-7A","status":"publicP","labelIndex":null,"synonyms":[],"rgb":[38,204,19],"children":[{"name":"Area 7A (SPL) - left hemisphere","rgb":[38,204,19],"labelIndex":134,"ngId":"jubrain v17 left","children":[]},{"name":"Area 7A (SPL) - right hemisphere","rgb":[38,204,19],"ngId":"jubrain v17 right","labelIndex":134,"children":[]}]},{"name":"Area 5Ci (SPL)","arealabel":"Area-5Ci","status":"publicP","labelIndex":null,"synonyms":[],"rgb":[79,242,146],"children":[{"name":"Area 5Ci (SPL) - left hemisphere","rgb":[79,242,146],"labelIndex":136,"ngId":"jubrain v17 left","children":[]},{"name":"Area 5Ci (SPL) - right hemisphere","rgb":[79,242,146],"ngId":"jubrain v17 right","labelIndex":136,"children":[]}]}]},{"name":"parietal operculum","status":null,"labelIndex":null,"synonyms":[],"rgb":null,"children":[{"name":"Area OP2 (POperc)","arealabel":"Area-OP2","status":"publicP","labelIndex":null,"synonyms":[],"rgb":[36,47,221],"children":[{"name":"Area OP2 (POperc) - left hemisphere","rgb":[36,47,221],"labelIndex":74,"ngId":"jubrain v17 left","children":[]},{"name":"Area OP2 (POperc) - right hemisphere","rgb":[36,47,221],"ngId":"jubrain v17 right","labelIndex":74,"children":[]}]},{"name":"Area OP4 (POperc)","arealabel":"Area-OP4","status":"publicP","labelIndex":null,"synonyms":[],"rgb":[89,80,132],"children":[{"name":"Area OP4 (POperc) - left hemisphere","rgb":[89,80,132],"labelIndex":72,"ngId":"jubrain v17 left","children":[]},{"name":"Area OP4 (POperc) - right hemisphere","rgb":[89,80,132],"ngId":"jubrain v17 right","labelIndex":72,"children":[]}]},{"name":"Area OP3 (POperc)","arealabel":"Area-OP3","status":"publicP","labelIndex":null,"synonyms":[],"rgb":[58,122,80],"children":[{"name":"Area OP3 (POperc) - left hemisphere","rgb":[58,122,80],"labelIndex":75,"ngId":"jubrain v17 left","children":[]},{"name":"Area OP3 (POperc) - right hemisphere","rgb":[58,122,80],"ngId":"jubrain v17 right","labelIndex":75,"children":[]}]},{"name":"Area OP1 (POperc)","arealabel":"Area-OP1","status":"publicP","labelIndex":null,"synonyms":[],"rgb":[250,182,34],"children":[{"name":"Area OP1 (POperc) - left hemisphere","rgb":[250,182,34],"labelIndex":73,"ngId":"jubrain v17 left","children":[]},{"name":"Area OP1 (POperc) - right hemisphere","rgb":[250,182,34],"ngId":"jubrain v17 right","labelIndex":73,"children":[]}]}]},{"name":"postcentral gyrus","status":null,"labelIndex":null,"synonyms":[],"rgb":null,"children":[{"name":"Area 1 (PostCG)","arealabel":"Area-1","status":"publicP","labelIndex":null,"synonyms":[],"rgb":[232,185,250],"children":[{"name":"Area 1 (PostCG) - left hemisphere","rgb":[232,185,250],"labelIndex":125,"ngId":"jubrain v17 left","children":[]},{"name":"Area 1 (PostCG) - right hemisphere","rgb":[232,185,250],"ngId":"jubrain v17 right","labelIndex":125,"children":[]}]},{"name":"Area 3b (PostCG)","arealabel":"Area-3b","status":"publicP","labelIndex":null,"synonyms":[],"rgb":[239,246,155],"children":[{"name":"Area 3b (PostCG) - left hemisphere","rgb":[239,246,155],"labelIndex":127,"ngId":"jubrain v17 left","children":[]},{"name":"Area 3b (PostCG) - right hemisphere","rgb":[239,246,155],"ngId":"jubrain v17 right","labelIndex":127,"children":[]}]},{"name":"Area 3a (PostCG)","arealabel":"Area-3a","status":"publicP","labelIndex":null,"synonyms":[],"rgb":[187,133,50],"children":[{"name":"Area 3a (PostCG) - 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diff --git a/src/res/ext/colin.json b/src/res/ext/colin.json
index e102f7602c73bdab81ad74bed31655428260a07c..44347927edd33fb406eed1383664ece8cd1de3aa 100644
--- a/src/res/ext/colin.json
+++ b/src/res/ext/colin.json
@@ -1 +1 @@
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In 1998, a new atlas with much higher definition than MNI305s was created at the MNI. One individual (CJH) was scanned 27 times and the images linearly registered to create an average with high SNR and structure definition (Holmes et al., 1998). This average was linearly registered to the average 305. Ironically, this dataset was not originally intended for use as a stereotaxic template but as the sub- strate for an ROI parcellation scheme to be used with ANIMAL non-linear spatial normalization (Collins et al., 1995), i.e. it was intended for the purpose of segmentation, NOT stereotaxy. As a single brain atlas, it did not capture anatomical variability and was, to some degree, a reversion to the Talairach approach. However, the high definition proved too attractive to the community and, after non-linear mapping to fit the MNI305 space, it has been adopted by many groups as a stereotaxic template (e.g., AFNI, Cox,; Brainstorm, Tadel et al., 2011; SPM, Litvak et al., 2011; Fieldtrip, Oostenveld et al., 2011)."}}
\ No newline at end of file
diff --git a/src/services/zipFileDownload.service.ts b/src/services/zipFileDownload.service.ts
index 434a11338646477647249970c75463c7b17fd2c2..f6b9e164faeb25c84d7590d9085fb4edd81de708 100644
--- a/src/services/zipFileDownload.service.ts
+++ b/src/services/zipFileDownload.service.ts
@@ -1,21 +1,25 @@
import { Injectable } from "@angular/core";
import {HttpClient} from "@angular/common/http";
import {AtlasViewerConstantsServices} from "src/atlasViewer/atlasViewer.constantService.service";
+import {map} from "rxjs/operators";
@Injectable({ providedIn: 'root' })
export class ZipFileDownloadService {
constructor(private httpClient: HttpClient, private constantService: AtlasViewerConstantsServices) {}
- downloadZip(publicationsText, fileName) {
+ downloadZip(publicationsText, fileName, niiFiles) {
const correctedName = fileName.replace(/[|&;$%@"<>()+,/]/g, "")
- this.httpClient.post(this.constantService.backendUrl + 'datasets/downloadParcellationThemself', {
+ return this.httpClient.post(this.constantService.backendUrl + 'datasets/downloadParcellationThemself', {
fileName: correctedName,
publicationsText: publicationsText,
+ niiFiles: niiFiles === 0 ? null : niiFiles
},{responseType: "text"}
- ).subscribe(data => {
- this.downloadFile(data, correctedName)
- })
+ ).pipe(
+ map (data => {
+ this.downloadFile(data, correctedName)
+ })
+ )
}
downloadFile(data, fileName) {