diff --git a/deploy/datasets/query.js b/deploy/datasets/query.js
index 83986048bfd30ee2eca99c1bba2cd97cddf51b6d..b6f0c3f672bb4e57bd92f108a2db99091ada6cff 100644
--- a/deploy/datasets/query.js
+++ b/deploy/datasets/query.js
@@ -3,7 +3,7 @@ const request = require('request')
const URL = require('url')
const path = require('path')
const archiver = require('archiver')
-const { commonSenseDsFilter } = require('./supplements/commonSense')
+const { getCommonSenseDsFilter } = require('./supplements/commonSense')
const { getPreviewFile, hasPreview } = require('./supplements/previewFile')
const { init: kgQueryUtilInit, getUserKGRequestParam } = require('./util')
@@ -166,11 +166,11 @@ readConfigFile('waxholmRatV2_0.json')
readConfigFile('allenMouse.json')
.then(data => JSON.parse(data))
.then(json => {
- const flattenedAllen = flattenArray(json.parcellations[0].regions)
- allen2017Set = populateSet(flattenedAllen)
-
- const flattenedAllen2017 = flattenArray(json.parcellations[1].regions)
+ const flattenedAllen2017 = flattenArray(json.parcellations[0].regions)
allen2017Set = populateSet(flattenedAllen2017)
+
+ const flattenedAllen2015 = flattenArray(json.parcellations[1].regions)
+ allen2015Set = populateSet(flattenedAllen2015)
})
const filterByPRSet = (prs, atlasPrSet = new Set()) => {
@@ -183,7 +183,7 @@ const filterByPRName = ({ parcellationName = null, dataset = {parcellationAtlas:
: (dataset.parcellationAtlas || []).some(({ name }) => name === parcellationName)
const filter = (datasets = [], { templateName, parcellationName }) => datasets
- .filter(ds => commonSenseDsFilter({ ds, templateName, parcellationName }))
+ .filter(getCommonSenseDsFilter({ templateName, parcellationName }))
.filter(ds => {
if (/infant/.test(ds.name))
return false
diff --git a/deploy/datasets/supplements/commonSense.js b/deploy/datasets/supplements/commonSense.js
index 42e4f30f57e4a2b8e1c15ed7ebba0a4572bbcb60..404617f8f6e82ba5ff8475dbd5dd0bf27b1069b3 100644
--- a/deploy/datasets/supplements/commonSense.js
+++ b/deploy/datasets/supplements/commonSense.js
@@ -34,7 +34,7 @@ const mouseParcellationSet = new Set([
'Allen Mouse Common Coordinate Framework v3 2015'
])
-const dsIsHuman = ({ds}) => ds && ds.species.some(species => /homo\ sapiens/i.test(species))
+const dsIsHuman = ({ ds }) => ds && ds.species.some(species => /homo\ sapiens/i.test(species))
const dsIsRat = ({ ds }) => ds && ds.species.some(species => /rattus\ norvegicus/i.test(species))
const dsIsMouse = ({ ds }) => ds && ds.species.some(species => /mus\ musculus/i.test(species))
@@ -50,7 +50,23 @@ const queryIsHuman = ({ templateName, parcellationName }) =>
(templateName && humanTemplateSet.has(templateName))
|| (parcellationName && humanParcellationSet.has(parcellationName))
-exports.commonSenseDsFilter = ({ ds , templateName, parcellationName}) =>
- (queryIsHuman({ templateName, parcellationName }) && !dsIsRat({ ds }) && !dsIsMouse({ ds }))
- || (queryIsMouse({ templateName, parcellationName }) && !dsIsRat({ ds }) && !dsIsHuman({ ds }))
- || (queryIsRat({ templateName, parcellationName }) && !dsIsMouse({ ds }) && !dsIsHuman({ ds }))
+exports.getCommonSenseDsFilter = ({ templateName, parcellationName }) => {
+ const trueFilter = queryIsHuman({ templateName, parcellationName })
+ ? dsIsHuman
+ : queryIsMouse({ templateName, parcellationName })
+ ? dsIsMouse
+ : queryIsRat({ templateName, parcellationName })
+ ? dsIsRat
+ : null
+
+ const falseFilters = queryIsHuman({ templateName, parcellationName })
+ ? [dsIsMouse, dsIsRat]
+ : queryIsMouse({ templateName, parcellationName })
+ ? [dsIsHuman, dsIsRat]
+ : queryIsRat({ templateName, parcellationName })
+ ? [dsIsMouse, dsIsHuman]
+ : []
+ return ds => trueFilter
+ ? trueFilter({ ds }) || (falseFilters.every(filterFn => !filterFn({ ds })))
+ : false
+}
diff --git a/src/atlasViewer/atlasViewer.template.html b/src/atlasViewer/atlasViewer.template.html
index 1cc074671e5d15a70883a22ae78ba102f3a90e47..20a455ef34dff06334cf514684e342d04a098451 100644
--- a/src/atlasViewer/atlasViewer.template.html
+++ b/src/atlasViewer/atlasViewer.template.html
@@ -6,7 +6,7 @@
<!-- kg tos -->
<ng-template #kgToS>
- <h2 mat-dialog-title>Knowldge Graph ToS</h2>
+ <h2 mat-dialog-title>Knowledge Graph ToS</h2>
<mat-dialog-content class="w-50vw">
<kgtos-component>
</kgtos-component>
diff --git a/src/res/ext/MNI152.json b/src/res/ext/MNI152.json
index fd2644c03ad6cc545934b38dc04b7ea3e4b9b192..7b9f06d945fe5c9c21ca785e74d17a75e3352b9c 100644
--- a/src/res/ext/MNI152.json
+++ b/src/res/ext/MNI152.json
@@ -10,9 +10,13 @@
"name": "JuBrain Cytoarchitectonic Atlas",
"ngId": "jubrain mni152 v18 left",
"auxillaryMeshIndices": [ 65535 ],
+ "originDatasets":[{
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "4ac9f0bc-560d-47e0-8916-7b24da9bb0ce"
+ }],
"properties": {
"version": "1.0",
- "description": "not yet",
+ "description": "This dataset contains the whole-brain parcellation of the JuBrain Cytoarchitectonic Atlas (Amunts and Zilles, 2015) in the MNI Colin 27 as well as the MNI ICBM 152 2009c nonlinear asymmetric reference space. The parcellation is derived from the individual probability maps (PMs) of the cytoarchitectonic regions released in the JuBrain Atlas, that are further combined into a Maximum Probability Map (MPM). The MPM is calculated by considering for each voxel the probability of all cytoarchitectonic areas released in the atlas, and determining the most probable assignment (Eickhoff 2005). Note that methodological improvements and integration of new brain structures may lead to small deviations in earlier released datasets.",
"publications": [
{
"doi": "https://doi.org/10.1038/nrn2776",
diff --git a/src/res/ext/allenMouse.json b/src/res/ext/allenMouse.json
index e0b9430c01d41992ffeb8367630c694251d31ed2..13ebc3c9f38106b9cd7d037544070be2abf7bb0f 100644
--- a/src/res/ext/allenMouse.json
+++ b/src/res/ext/allenMouse.json
@@ -27,6 +27,9 @@
],
"name": "root",
"labelIndex": 997,
+ "relatedAreas": [
+ "Whole brain"
+ ],
"children": [
{
"ngId": "v3_2017",
@@ -19115,726 +19118,348 @@
"type": "parcellation",
"regions": [
{
- "name": "Basic cell groups and regions",
- "labelIndex": 8,
+ "ngId": "atlas",
"rgb": [
- 191,
- 218,
- 227
+ 255,
+ 255,
+ 255
+ ],
+ "position": [
+ -1977500,
+ -867500,
+ -27500
+ ],
+ "name": "root",
+ "labelIndex": 997,
+ "relatedAreas": [
+ "Whole brain"
],
"children": [
{
- "name": "Cerebrum",
- "labelIndex": 567,
+ "name": "Basic cell groups and regions",
+ "labelIndex": 8,
"rgb": [
- 176,
- 240,
- 255
+ 191,
+ 218,
+ 227
],
"children": [
{
- "name": "Cerebral cortex",
- "labelIndex": 688,
+ "name": "Cerebrum",
+ "labelIndex": 567,
"rgb": [
176,
- 255,
- 184
+ 240,
+ 255
],
"children": [
{
- "name": "Cortical plate",
- "labelIndex": 695,
+ "name": "Cerebral cortex",
+ "labelIndex": 688,
"rgb": [
- 112,
+ 176,
255,
- 112
+ 184
],
"children": [
{
- "name": "Isocortex",
- "labelIndex": 315,
+ "name": "Cortical plate",
+ "labelIndex": 695,
"rgb": [
112,
255,
- 113
+ 112
],
"children": [
{
- "name": "Frontal pole, cerebral cortex",
- "labelIndex": 184,
+ "name": "Isocortex",
+ "labelIndex": 315,
"rgb": [
- 38,
- 143,
- 69
+ 112,
+ 255,
+ 113
],
"children": [
{
- "name": "Frontal pole, layer 1",
- "labelIndex": 68,
- "rgb": [
- 38,
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- ],
- "children": [],
- "ontologyMetadata": {
- "id": 68,
- "atlas_id": 998,
- "ontology_id": 1,
- "acronym": "FRP1",
- "name": "Frontal pole, layer 1",
- "color_hex_triplet": "268F45",
- "graph_order": 7,
- "st_level": null,
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38,
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],
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+ -3502500,
+ 1067500
+ ],
+ [
+ -122500,
+ -3502500,
+ 1067500
+ ]
+ ]
},
{
- "name": "secondary fissure",
- "labelIndex": 3,
+ "name": "fourth ventricle",
+ "labelIndex": 145,
"rgb": [
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],
- "children": [],
- "ontologyMetadata": {
- "id": 3,
- "atlas_id": 707,
- "ontology_id": 1,
- "acronym": "sec",
- "name": "secondary fissure",
- "color_hex_triplet": "AAAAAA",
- "graph_order": 1299,
- "st_level": null,
- "hemisphere_id": 3,
- "parent_structure_id": 1040
- }
- },
- {
- "name": "posterolateral fissure",
- "labelIndex": 11,
- "rgb": [
- 170,
- 170,
- 170
+ "children": [
+ {
+ "name": "lateral recess",
+ "labelIndex": 153,
+ "rgb": [
+ 170,
+ 170,
+ 170
+ ],
+ "children": [],
+ "ontologyMetadata": {
+ "id": 153,
+ "atlas_id": 726,
+ "ontology_id": 1,
+ "acronym": "V4r",
+ "name": "lateral recess",
+ "color_hex_triplet": "AAAAAA",
+ "graph_order": 1285,
+ "st_level": null,
+ "hemisphere_id": 3,
+ "parent_structure_id": 145,
+ "centers": [
+ [
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+ 3410
+ ],
+ [
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+ 5070,
+ 7990
+ ]
+ ]
+ },
+ "POIs": [
+ [
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+ -5102500,
+ -1032500
+ ],
+ [
+ -2252500,
+ -5102500,
+ -1032500
+ ]
+ ]
+ }
],
- "children": [],
"ontologyMetadata": {
- "id": 11,
- "atlas_id": 708,
+ "id": 145,
+ "atlas_id": 725,
"ontology_id": 1,
- "acronym": "plf",
- "name": "posterolateral fissure",
+ "acronym": "V4",
+ "name": "fourth ventricle",
"color_hex_triplet": "AAAAAA",
- "graph_order": 1300,
+ "graph_order": 1284,
"st_level": null,
"hemisphere_id": 3,
- "parent_structure_id": 1040
- }
+ "parent_structure_id": 73,
+ "centers": [
+ [
+ 11620,
+ 4470,
+ 4400
+ ],
+ [
+ 11620,
+ 4470,
+ 7000
+ ]
+ ]
+ },
+ "POIs": [
+ [
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+ -4982500,
+ -432500
+ ],
+ [
+ -1262500,
+ -4982500,
+ -432500
+ ]
+ ]
},
{
- "name": "nodular fissure",
- "labelIndex": 18,
+ "name": "central canal, spinal cord/medulla",
+ "labelIndex": 164,
"rgb": [
170,
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@@ -67711,131 +67365,534 @@
],
"children": [],
"ontologyMetadata": {
- "id": 18,
- "atlas_id": 709,
+ "id": 164,
+ "atlas_id": 727,
"ontology_id": 1,
- "acronym": "nf",
- "name": "nodular fissure",
+ "acronym": "c",
+ "name": "central canal, spinal cord/medulla",
"color_hex_triplet": "AAAAAA",
- "graph_order": 1301,
+ "graph_order": 1286,
"st_level": null,
"hemisphere_id": 3,
- "parent_structure_id": 1040
- }
- },
- {
- "name": "simple fissure",
- "labelIndex": 25,
- "rgb": [
- 170,
- 170,
- 170
+ "parent_structure_id": 73,
+ "centers": [
+ [
+ 12720,
+ 5570,
+ 5690
+ ],
+ [
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+ ]
+ ]
+ },
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+ -1532500
+ ],
+ [
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+ -6082500,
+ -1532500
+ ]
+ ]
+ }
+ ],
+ "ontologyMetadata": {
+ "id": 73,
+ "atlas_id": 716,
+ "ontology_id": 1,
+ "acronym": "VS",
+ "name": "ventricular systems",
+ "color_hex_triplet": "AAAAAA",
+ "graph_order": 1275,
+ "st_level": null,
+ "hemisphere_id": 3,
+ "parent_structure_id": 997,
+ "centers": [
+ [
+ 7790,
+ 3740,
+ 5680
],
- "children": [],
- "ontologyMetadata": {
- "id": 25,
- "atlas_id": 710,
- "ontology_id": 1,
- "acronym": "sif",
- "name": "simple fissure",
- "color_hex_triplet": "AAAAAA",
- "graph_order": 1302,
- "st_level": null,
- "hemisphere_id": 3,
- "parent_structure_id": 1040
- }
- },
+ [
+ 7790,
+ 3740,
+ 5720
+ ]
+ ]
+ },
+ "POIs": [
+ [
+ 57500,
+ -1152500,
+ 297500
+ ],
+ [
+ 17500,
+ -1152500,
+ 297500
+ ]
+ ]
+ },
+ {
+ "name": "grooves",
+ "labelIndex": 1024,
+ "rgb": [
+ 170,
+ 170,
+ 170
+ ],
+ "children": [
{
- "name": "intercrural fissure",
- "labelIndex": 34,
+ "name": "grooves of the cerebral cortex",
+ "labelIndex": 1032,
"rgb": [
170,
170,
170
],
- "children": [],
- "ontologyMetadata": {
- "id": 34,
- "atlas_id": 711,
- "ontology_id": 1,
- "acronym": "icf",
- "name": "intercrural fissure",
- "color_hex_triplet": "AAAAAA",
- "graph_order": 1303,
- "st_level": null,
- "hemisphere_id": 3,
- "parent_structure_id": 1040
- }
- },
- {
- "name": "ansoparamedian fissure",
- "labelIndex": 43,
- "rgb": [
- 170,
- 170,
- 170
+ "children": [
+ {
+ "name": "endorhinal groove",
+ "labelIndex": 1055,
+ "rgb": [
+ 170,
+ 170,
+ 170
+ ],
+ "children": [],
+ "ontologyMetadata": {
+ "id": 1055,
+ "atlas_id": 697,
+ "ontology_id": 1,
+ "acronym": "eg",
+ "name": "endorhinal groove",
+ "color_hex_triplet": "AAAAAA",
+ "graph_order": 1289,
+ "st_level": null,
+ "hemisphere_id": 3,
+ "parent_structure_id": 1032
+ }
+ },
+ {
+ "name": "hippocampal fissure",
+ "labelIndex": 1063,
+ "rgb": [
+ 170,
+ 170,
+ 170
+ ],
+ "children": [],
+ "ontologyMetadata": {
+ "id": 1063,
+ "atlas_id": 698,
+ "ontology_id": 1,
+ "acronym": "hf",
+ "name": "hippocampal fissure",
+ "color_hex_triplet": "AAAAAA",
+ "graph_order": 1290,
+ "st_level": null,
+ "hemisphere_id": 3,
+ "parent_structure_id": 1032
+ }
+ },
+ {
+ "name": "rhinal fissure",
+ "labelIndex": 1071,
+ "rgb": [
+ 170,
+ 170,
+ 170
+ ],
+ "children": [],
+ "ontologyMetadata": {
+ "id": 1071,
+ "atlas_id": 699,
+ "ontology_id": 1,
+ "acronym": "rf",
+ "name": "rhinal fissure",
+ "color_hex_triplet": "AAAAAA",
+ "graph_order": 1291,
+ "st_level": null,
+ "hemisphere_id": 3,
+ "parent_structure_id": 1032
+ }
+ },
+ {
+ "name": "rhinal incisure",
+ "labelIndex": 1078,
+ "rgb": [
+ 170,
+ 170,
+ 170
+ ],
+ "children": [],
+ "ontologyMetadata": {
+ "id": 1078,
+ "atlas_id": 700,
+ "ontology_id": 1,
+ "acronym": "ri",
+ "name": "rhinal incisure",
+ "color_hex_triplet": "AAAAAA",
+ "graph_order": 1292,
+ "st_level": null,
+ "hemisphere_id": 3,
+ "parent_structure_id": 1032
+ }
+ }
],
- "children": [],
"ontologyMetadata": {
- "id": 43,
- "atlas_id": 712,
+ "id": 1032,
+ "atlas_id": 694,
"ontology_id": 1,
- "acronym": "apf",
- "name": "ansoparamedian fissure",
+ "acronym": "grv of CTX",
+ "name": "grooves of the cerebral cortex",
"color_hex_triplet": "AAAAAA",
- "graph_order": 1304,
+ "graph_order": 1288,
"st_level": null,
"hemisphere_id": 3,
- "parent_structure_id": 1040
+ "parent_structure_id": 1024
}
},
{
- "name": "intraparafloccular fissure",
- "labelIndex": 49,
+ "name": "grooves of the cerebellar cortex",
+ "labelIndex": 1040,
"rgb": [
170,
170,
170
],
- "children": [],
- "ontologyMetadata": {
- "id": 49,
- "atlas_id": 713,
- "ontology_id": 1,
- "acronym": "ipf",
- "name": "intraparafloccular fissure",
- "color_hex_triplet": "AAAAAA",
- "graph_order": 1305,
- "st_level": null,
- "hemisphere_id": 3,
- "parent_structure_id": 1040
- }
- },
- {
- "name": "paramedian sulcus",
- "labelIndex": 57,
- "rgb": [
- 170,
- 170,
- 170
+ "children": [
+ {
+ "name": "precentral fissure",
+ "labelIndex": 1087,
+ "rgb": [
+ 170,
+ 170,
+ 170
+ ],
+ "children": [],
+ "ontologyMetadata": {
+ "id": 1087,
+ "atlas_id": 701,
+ "ontology_id": 1,
+ "acronym": "pce",
+ "name": "precentral fissure",
+ "color_hex_triplet": "AAAAAA",
+ "graph_order": 1294,
+ "st_level": null,
+ "hemisphere_id": 3,
+ "parent_structure_id": 1040
+ }
+ },
+ {
+ "name": "preculminate fissure",
+ "labelIndex": 1095,
+ "rgb": [
+ 170,
+ 170,
+ 170
+ ],
+ "children": [],
+ "ontologyMetadata": {
+ "id": 1095,
+ "atlas_id": 702,
+ "ontology_id": 1,
+ "acronym": "pcf",
+ "name": "preculminate fissure",
+ "color_hex_triplet": "AAAAAA",
+ "graph_order": 1295,
+ "st_level": null,
+ "hemisphere_id": 3,
+ "parent_structure_id": 1040
+ }
+ },
+ {
+ "name": "primary fissure",
+ "labelIndex": 1103,
+ "rgb": [
+ 170,
+ 170,
+ 170
+ ],
+ "children": [],
+ "ontologyMetadata": {
+ "id": 1103,
+ "atlas_id": 703,
+ "ontology_id": 1,
+ "acronym": "pri",
+ "name": "primary fissure",
+ "color_hex_triplet": "AAAAAA",
+ "graph_order": 1296,
+ "st_level": null,
+ "hemisphere_id": 3,
+ "parent_structure_id": 1040
+ }
+ },
+ {
+ "name": "posterior superior fissure",
+ "labelIndex": 1112,
+ "rgb": [
+ 170,
+ 170,
+ 170
+ ],
+ "children": [],
+ "ontologyMetadata": {
+ "id": 1112,
+ "atlas_id": 704,
+ "ontology_id": 1,
+ "acronym": "psf",
+ "name": "posterior superior fissure",
+ "color_hex_triplet": "AAAAAA",
+ "graph_order": 1297,
+ "st_level": null,
+ "hemisphere_id": 3,
+ "parent_structure_id": 1040
+ }
+ },
+ {
+ "name": "prepyramidal fissure",
+ "labelIndex": 1119,
+ "rgb": [
+ 170,
+ 170,
+ 170
+ ],
+ "children": [],
+ "ontologyMetadata": {
+ "id": 1119,
+ "atlas_id": 705,
+ "ontology_id": 1,
+ "acronym": "ppf",
+ "name": "prepyramidal fissure",
+ "color_hex_triplet": "AAAAAA",
+ "graph_order": 1298,
+ "st_level": null,
+ "hemisphere_id": 3,
+ "parent_structure_id": 1040
+ }
+ },
+ {
+ "name": "secondary fissure",
+ "labelIndex": 3,
+ "rgb": [
+ 170,
+ 170,
+ 170
+ ],
+ "children": [],
+ "ontologyMetadata": {
+ "id": 3,
+ "atlas_id": 707,
+ "ontology_id": 1,
+ "acronym": "sec",
+ "name": "secondary fissure",
+ "color_hex_triplet": "AAAAAA",
+ "graph_order": 1299,
+ "st_level": null,
+ "hemisphere_id": 3,
+ "parent_structure_id": 1040
+ }
+ },
+ {
+ "name": "posterolateral fissure",
+ "labelIndex": 11,
+ "rgb": [
+ 170,
+ 170,
+ 170
+ ],
+ "children": [],
+ "ontologyMetadata": {
+ "id": 11,
+ "atlas_id": 708,
+ "ontology_id": 1,
+ "acronym": "plf",
+ "name": "posterolateral fissure",
+ "color_hex_triplet": "AAAAAA",
+ "graph_order": 1300,
+ "st_level": null,
+ "hemisphere_id": 3,
+ "parent_structure_id": 1040
+ }
+ },
+ {
+ "name": "nodular fissure",
+ "labelIndex": 18,
+ "rgb": [
+ 170,
+ 170,
+ 170
+ ],
+ "children": [],
+ "ontologyMetadata": {
+ "id": 18,
+ "atlas_id": 709,
+ "ontology_id": 1,
+ "acronym": "nf",
+ "name": "nodular fissure",
+ "color_hex_triplet": "AAAAAA",
+ "graph_order": 1301,
+ "st_level": null,
+ "hemisphere_id": 3,
+ "parent_structure_id": 1040
+ }
+ },
+ {
+ "name": "simple fissure",
+ "labelIndex": 25,
+ "rgb": [
+ 170,
+ 170,
+ 170
+ ],
+ "children": [],
+ "ontologyMetadata": {
+ "id": 25,
+ "atlas_id": 710,
+ "ontology_id": 1,
+ "acronym": "sif",
+ "name": "simple fissure",
+ "color_hex_triplet": "AAAAAA",
+ "graph_order": 1302,
+ "st_level": null,
+ "hemisphere_id": 3,
+ "parent_structure_id": 1040
+ }
+ },
+ {
+ "name": "intercrural fissure",
+ "labelIndex": 34,
+ "rgb": [
+ 170,
+ 170,
+ 170
+ ],
+ "children": [],
+ "ontologyMetadata": {
+ "id": 34,
+ "atlas_id": 711,
+ "ontology_id": 1,
+ "acronym": "icf",
+ "name": "intercrural fissure",
+ "color_hex_triplet": "AAAAAA",
+ "graph_order": 1303,
+ "st_level": null,
+ "hemisphere_id": 3,
+ "parent_structure_id": 1040
+ }
+ },
+ {
+ "name": "ansoparamedian fissure",
+ "labelIndex": 43,
+ "rgb": [
+ 170,
+ 170,
+ 170
+ ],
+ "children": [],
+ "ontologyMetadata": {
+ "id": 43,
+ "atlas_id": 712,
+ "ontology_id": 1,
+ "acronym": "apf",
+ "name": "ansoparamedian fissure",
+ "color_hex_triplet": "AAAAAA",
+ "graph_order": 1304,
+ "st_level": null,
+ "hemisphere_id": 3,
+ "parent_structure_id": 1040
+ }
+ },
+ {
+ "name": "intraparafloccular fissure",
+ "labelIndex": 49,
+ "rgb": [
+ 170,
+ 170,
+ 170
+ ],
+ "children": [],
+ "ontologyMetadata": {
+ "id": 49,
+ "atlas_id": 713,
+ "ontology_id": 1,
+ "acronym": "ipf",
+ "name": "intraparafloccular fissure",
+ "color_hex_triplet": "AAAAAA",
+ "graph_order": 1305,
+ "st_level": null,
+ "hemisphere_id": 3,
+ "parent_structure_id": 1040
+ }
+ },
+ {
+ "name": "paramedian sulcus",
+ "labelIndex": 57,
+ "rgb": [
+ 170,
+ 170,
+ 170
+ ],
+ "children": [],
+ "ontologyMetadata": {
+ "id": 57,
+ "atlas_id": 714,
+ "ontology_id": 1,
+ "acronym": "pms",
+ "name": "paramedian sulcus",
+ "color_hex_triplet": "AAAAAA",
+ "graph_order": 1306,
+ "st_level": null,
+ "hemisphere_id": 3,
+ "parent_structure_id": 1040
+ }
+ },
+ {
+ "name": "parafloccular sulcus",
+ "labelIndex": 65,
+ "rgb": [
+ 170,
+ 170,
+ 170
+ ],
+ "children": [],
+ "ontologyMetadata": {
+ "id": 65,
+ "atlas_id": 715,
+ "ontology_id": 1,
+ "acronym": "pfs",
+ "name": "parafloccular sulcus",
+ "color_hex_triplet": "AAAAAA",
+ "graph_order": 1307,
+ "st_level": null,
+ "hemisphere_id": 3,
+ "parent_structure_id": 1040
+ }
+ }
],
- "children": [],
"ontologyMetadata": {
- "id": 57,
- "atlas_id": 714,
+ "id": 1040,
+ "atlas_id": 695,
"ontology_id": 1,
- "acronym": "pms",
- "name": "paramedian sulcus",
+ "acronym": "grv of CBX",
+ "name": "grooves of the cerebellar cortex",
"color_hex_triplet": "AAAAAA",
- "graph_order": 1306,
+ "graph_order": 1293,
"st_level": null,
"hemisphere_id": 3,
- "parent_structure_id": 1040
+ "parent_structure_id": 1024
}
},
{
- "name": "parafloccular sulcus",
- "labelIndex": 65,
+ "name": "Interpeduncular fossa",
+ "labelIndex": 624,
"rgb": [
170,
170,
@@ -67843,89 +67900,55 @@
],
"children": [],
"ontologyMetadata": {
- "id": 65,
- "atlas_id": 715,
+ "id": 624,
+ "atlas_id": 926,
"ontology_id": 1,
- "acronym": "pfs",
- "name": "parafloccular sulcus",
+ "acronym": "IPF",
+ "name": "Interpeduncular fossa",
"color_hex_triplet": "AAAAAA",
- "graph_order": 1307,
+ "graph_order": 1308,
"st_level": null,
"hemisphere_id": 3,
- "parent_structure_id": 1040
+ "parent_structure_id": 1024
}
}
],
"ontologyMetadata": {
- "id": 1040,
- "atlas_id": 695,
+ "id": 1024,
+ "atlas_id": 693,
"ontology_id": 1,
- "acronym": "grv of CBX",
- "name": "grooves of the cerebellar cortex",
+ "acronym": "grv",
+ "name": "grooves",
"color_hex_triplet": "AAAAAA",
- "graph_order": 1293,
+ "graph_order": 1287,
"st_level": null,
"hemisphere_id": 3,
- "parent_structure_id": 1024
+ "parent_structure_id": 997
}
},
{
- "name": "Interpeduncular fossa",
- "labelIndex": 624,
+ "name": "retina",
+ "labelIndex": 304325711,
"rgb": [
- 170,
- 170,
- 170
+ 127,
+ 46,
+ 126
],
"children": [],
"ontologyMetadata": {
- "id": 624,
- "atlas_id": 926,
+ "id": 304325711,
+ "atlas_id": null,
"ontology_id": 1,
- "acronym": "IPF",
- "name": "Interpeduncular fossa",
- "color_hex_triplet": "AAAAAA",
- "graph_order": 1308,
+ "acronym": "retina",
+ "name": "retina",
+ "color_hex_triplet": "7F2E7E",
+ "graph_order": 1309,
"st_level": null,
"hemisphere_id": 3,
- "parent_structure_id": 1024
+ "parent_structure_id": 997
}
}
- ],
- "ontologyMetadata": {
- "id": 1024,
- "atlas_id": 693,
- "ontology_id": 1,
- "acronym": "grv",
- "name": "grooves",
- "color_hex_triplet": "AAAAAA",
- "graph_order": 1287,
- "st_level": null,
- "hemisphere_id": 3,
- "parent_structure_id": 997
- }
- },
- {
- "name": "retina",
- "labelIndex": 304325711,
- "rgb": [
- 127,
- 46,
- 126
- ],
- "children": [],
- "ontologyMetadata": {
- "id": 304325711,
- "atlas_id": null,
- "ontology_id": 1,
- "acronym": "retina",
- "name": "retina",
- "color_hex_triplet": "7F2E7E",
- "graph_order": 1309,
- "st_level": null,
- "hemisphere_id": 3,
- "parent_structure_id": 997
- }
+ ]
}
],
"properties": {
diff --git a/src/res/ext/colin.json b/src/res/ext/colin.json
index cf46f53ef0dc35cae62852cd238f03cd123e570f..cc450f3455422e968b837474909fbce47be8decc 100644
--- a/src/res/ext/colin.json
+++ b/src/res/ext/colin.json
@@ -10,9 +10,13 @@
"name": "JuBrain Cytoarchitectonic Atlas",
"ngId": "jubrain colin v18 left",
"auxillaryMeshIndices": [ 65535 ],
+ "originDatasets":[{
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "4ac9f0bc-560d-47e0-8916-7b24da9bb0ce"
+ }],
"properties": {
"version": "1.0",
- "description": "not yet",
+ "description": "This dataset contains the whole-brain parcellation of the JuBrain Cytoarchitectonic Atlas (Amunts and Zilles, 2015) in the MNI Colin 27 as well as the MNI ICBM 152 2009c nonlinear asymmetric reference space. The parcellation is derived from the individual probability maps (PMs) of the cytoarchitectonic regions released in the JuBrain Atlas, that are further combined into a Maximum Probability Map (MPM). The MPM is calculated by considering for each voxel the probability of all cytoarchitectonic areas released in the atlas, and determining the most probable assignment (Eickhoff 2005). Note that methodological improvements and integration of new brain structures may lead to small deviations in earlier released datasets.",
"publications": [
{
"doi": "https://doi.org/10.1038/nrn2776",
diff --git a/src/res/ext/waxholmRatV2_0.json b/src/res/ext/waxholmRatV2_0.json
index e83c481d1b290d578113a6db9923520c194da9f2..58c045cb923f560434ec224ee815a2bd800e22d9 100644
--- a/src/res/ext/waxholmRatV2_0.json
+++ b/src/res/ext/waxholmRatV2_0.json
@@ -13,6 +13,10 @@
"ngId": "v3",
"type": "parcellation",
"name": "Waxholm Space rat brain atlas v3",
+ "originDatasets":[{
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "e80f9946-1aa9-494b-b81a-9048ca9afdbe"
+ }],
"regions": [{
"ngId": "v3",
"name": "Whole brain",
@@ -1544,6 +1548,10 @@
"ngId": "v2",
"type": "parcellation",
"name": "Waxholm Space rat brain atlas v2",
+ "originDatasets":[{
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "2c8ec4fb-45ca-4fe7-accf-c41b5e92c43d"
+ }],
"regions": [
{
"name": "Whole brain",
@@ -3193,6 +3201,10 @@
"ngId": "v1_01",
"type": "parcellation",
"name": "Waxholm Space rat brain atlas v1",
+ "originDatasets":[{
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "f40e466b-8247-463a-a4cb-56dfe68e7059"
+ }],
"regions": [
{
"ngId": "v1_01",
diff --git a/src/ui/databrowserModule/singleDataset/detailedView/singleDataset.template.html b/src/ui/databrowserModule/singleDataset/detailedView/singleDataset.template.html
index 7712519f9f92f68f5fad0509b22c98ba826b8053..8321998876bf131bef4e8a55259e4640d76b8cb5 100644
--- a/src/ui/databrowserModule/singleDataset/detailedView/singleDataset.template.html
+++ b/src/ui/databrowserModule/singleDataset/detailedView/singleDataset.template.html
@@ -61,7 +61,11 @@
<!-- description -->
<mat-card-content *ngIf="!simpleMode">
- <small>{{ description }}</small>
+ <small>
+ <markdown-dom [markdown]="description">
+
+ </markdown-dom>
+ </small>
</mat-card-content>
<!-- publications -->
diff --git a/src/ui/nehubaContainer/statusCard/statusCard.template.html b/src/ui/nehubaContainer/statusCard/statusCard.template.html
index 9ccb604a3909ac6c06e0a73a12b79f1fa9106277..abb1d0047ffcecb30427ded8f9621b874c4d9854 100644
--- a/src/ui/nehubaContainer/statusCard/statusCard.template.html
+++ b/src/ui/nehubaContainer/statusCard/statusCard.template.html
@@ -44,7 +44,7 @@
navigateInput/>
<br />
- <small *ngIf="!isMobile">Mouse: </small>
+ <small *ngIf="!isMobile">Cursor: </small>
<small *ngIf="!isMobile">
{{ mouseCoord }}
</small>
diff --git a/src/util/pipes/templateParcellationHasMoreInfo.pipe.ts b/src/util/pipes/templateParcellationHasMoreInfo.pipe.ts
index aab97596acd5dd8fa6d335e45486756134a001c8..6d9facbe7f966ad4f7070fa294832fd05e47cf82 100644
--- a/src/util/pipes/templateParcellationHasMoreInfo.pipe.ts
+++ b/src/util/pipes/templateParcellationHasMoreInfo.pipe.ts
@@ -31,6 +31,7 @@ export class TemplateParcellationHasMoreInfo implements PipeTransform{
|| notNullNotEmptyString(pDescriptions)
|| notEmptyArray(publications)
|| notEmptyArray(pPublications)
+ || notEmptyArray(originDatasets)
return hasMoreInfo
? {