From 3f7d83571ed1aa1215c6471d8ec3fbd159f06bf2 Mon Sep 17 00:00:00 2001
From: Xiao Gui <xgui3783@gmail.com>
Date: Mon, 7 Dec 2020 19:06:49 +0100
Subject: [PATCH] update color, id, pmap preview for julich brain v3.0
---
src/res/ext/MNI152.json | 6352 +++++++++++++++++++++++++++++++--------
src/res/ext/colin.json | 6352 +++++++++++++++++++++++++++++++--------
2 files changed, 10250 insertions(+), 2454 deletions(-)
diff --git a/src/res/ext/MNI152.json b/src/res/ext/MNI152.json
index 97beaa5bc..4ff6635b1 100644
--- a/src/res/ext/MNI152.json
+++ b/src/res/ext/MNI152.json
@@ -58,26 +58,62 @@
"children": [
{
"name": "Ch 123 (Basal Forebrain)",
+ "status": "left hemisphere",
"labelIndex": 62,
"ngId": "MNI152_V25_LEFT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "Ch 123 (Basal Forebrain)",
"gray": "79"
- },
- "splitHemisphere": "62"
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "Ch 123 (Basal Forebrain) [v4.2, ICBM 2009c Asymmetric, left hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "147aaab9-d5f2-48db-80f3-95adc9e7e8a6"
+ }
+ ],
+ "rgb": [
+ 200,
+ 200,
+ 200
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "bb111a95-e04c-4987-8254-4af4ed8b0022"
+ }
}
},
{
"name": "Ch 123 (Basal Forebrain)",
+ "status": "right hemisphere",
"labelIndex": 62,
"ngId": "MNI152_V25_RIGHT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "Ch 123 (Basal Forebrain)",
"gray": "79"
- },
- "splitHemisphere": "62"
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "Ch 123 (Basal Forebrain) [v4.2, ICBM 2009c Asymmetric, right hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "147aaab9-d5f2-48db-80f3-95adc9e7e8a6"
+ }
+ ],
+ "rgb": [
+ 200,
+ 200,
+ 200
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "bb111a95-e04c-4987-8254-4af4ed8b0022"
+ }
}
}
],
@@ -93,16 +129,7 @@
}
}
}
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "magnocellular group within septum",
- "status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null
- }
- }
+ ]
},
{
"name": "sublenticular part of basal forebrain",
@@ -112,26 +139,62 @@
"children": [
{
"name": "Ch 4 (Basal Forebrain)",
+ "status": "left hemisphere",
"labelIndex": 97,
"ngId": "MNI152_V25_LEFT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "Ch 4 (Basal Forebrain)",
"gray": "13"
- },
- "splitHemisphere": "97"
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "Ch 4 (Basal Forebrain) [v4.2, ICBM 2009c Asymmetric, left hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "791a14c8-b899-414f-b237-27574a4cce7e"
+ }
+ ],
+ "rgb": [
+ 200,
+ 200,
+ 200
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "a5c9d95f-8e7c-4454-91b6-a790387370fc"
+ }
}
},
{
"name": "Ch 4 (Basal Forebrain)",
+ "status": "right hemisphere",
"labelIndex": 97,
"ngId": "MNI152_V25_RIGHT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "Ch 4 (Basal Forebrain)",
"gray": "13"
- },
- "splitHemisphere": "97"
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "Ch 4 (Basal Forebrain) [v4.2, ICBM 2009c Asymmetric, right hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "791a14c8-b899-414f-b237-27574a4cce7e"
+ }
+ ],
+ "rgb": [
+ 200,
+ 200,
+ 200
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "a5c9d95f-8e7c-4454-91b6-a790387370fc"
+ }
}
}
],
@@ -147,16 +210,7 @@
}
}
}
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "sublenticular part of basal forebrain",
- "status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null
- }
- }
+ ]
},
{
"name": "magnocellular group within horizontal limb of diagnoal band",
@@ -166,26 +220,62 @@
"children": [
{
"name": "Ch 123 (Basal Forebrain)",
+ "status": "left hemisphere",
"labelIndex": 62,
"ngId": "MNI152_V25_LEFT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "Ch 123 (Basal Forebrain)",
"gray": "79"
- },
- "splitHemisphere": "62"
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "Ch 123 (Basal Forebrain) [v4.2, ICBM 2009c Asymmetric, left hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "147aaab9-d5f2-48db-80f3-95adc9e7e8a6"
+ }
+ ],
+ "rgb": [
+ 200,
+ 200,
+ 200
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "bb111a95-e04c-4987-8254-4af4ed8b0022"
+ }
}
},
{
"name": "Ch 123 (Basal Forebrain)",
+ "status": "right hemisphere",
"labelIndex": 62,
"ngId": "MNI152_V25_RIGHT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "Ch 123 (Basal Forebrain)",
"gray": "79"
- },
- "splitHemisphere": "62"
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "Ch 123 (Basal Forebrain) [v4.2, ICBM 2009c Asymmetric, right hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "147aaab9-d5f2-48db-80f3-95adc9e7e8a6"
+ }
+ ],
+ "rgb": [
+ 200,
+ 200,
+ 200
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "bb111a95-e04c-4987-8254-4af4ed8b0022"
+ }
}
}
],
@@ -201,27 +291,9 @@
}
}
}
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "magnocellular group within horizontal limb of diagnoal band",
- "status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null
- }
- }
- }
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "basal forebrain",
- "status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null
+ ]
}
- }
+ ]
},
{
"name": "amygdala",
@@ -234,26 +306,62 @@
"children": [
{
"name": "LB (Amygdala)",
+ "status": "left hemisphere",
"labelIndex": 41,
"ngId": "MNI152_V25_LEFT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "LB (Amygdala)",
"gray": "94"
- },
- "splitHemisphere": "41"
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "LB (Amygdala) [v8.0, ICBM 2009c Asymmetric, left hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "fa4cab6a-1cec-4cec-b481-90aa0cc7d96c"
+ }
+ ],
+ "rgb": [
+ 200,
+ 200,
+ 200
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "708df0fa-e9a4-4c23-bd85-8957f6d30faf"
+ }
}
},
{
"name": "LB (Amygdala)",
+ "status": "right hemisphere",
"labelIndex": 41,
"ngId": "MNI152_V25_RIGHT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "LB (Amygdala)",
"gray": "94"
- },
- "splitHemisphere": "41"
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "LB (Amygdala) [v8.0, ICBM 2009c Asymmetric, right hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "fa4cab6a-1cec-4cec-b481-90aa0cc7d96c"
+ }
+ ],
+ "rgb": [
+ 200,
+ 200,
+ 200
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "708df0fa-e9a4-4c23-bd85-8957f6d30faf"
+ }
}
}
],
@@ -269,16 +377,7 @@
}
}
}
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "laterobasal group",
- "status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null
- }
- }
+ ]
},
{
"name": "superficial group",
@@ -288,39 +387,75 @@
"children": [
{
"name": "CM (Amygdala)",
+ "status": "left hemisphere",
"labelIndex": 85,
"ngId": "MNI152_V25_LEFT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "CM (Amygdala)",
"gray": "44"
- },
- "splitHemisphere": "85"
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "CM (Amygdala) [v8.0, ICBM 2009c Asymmetric, left hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "21ed6af0-5c39-4153-a3b8-8983530436ac"
+ }
+ ],
+ "rgb": [
+ 200,
+ 200,
+ 200
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "7aba8aef-6430-4fa7-ab54-8ecac558faed"
+ }
}
},
{
"name": "CM (Amygdala)",
+ "status": "right hemisphere",
"labelIndex": 85,
"ngId": "MNI152_V25_RIGHT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "CM (Amygdala)",
"gray": "44"
- },
- "splitHemisphere": "85"
- }
- }
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "CM (Amygdala)",
- "arealabel": "CM",
- "status": "publicP",
- "labelIndex": "290",
- "doi": "https://doi.org/10.25493/36FR-C95",
- "synonyms": [],
- "rgb": null
- }
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "CM (Amygdala) [v8.0, ICBM 2009c Asymmetric, right hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "21ed6af0-5c39-4153-a3b8-8983530436ac"
+ }
+ ],
+ "rgb": [
+ 200,
+ 200,
+ 200
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "7aba8aef-6430-4fa7-ab54-8ecac558faed"
+ }
+ }
+ }
+ ],
+ "_": {
+ "julichbrain-ontology_25.json": {
+ "name": "CM (Amygdala)",
+ "arealabel": "CM",
+ "status": "publicP",
+ "labelIndex": "290",
+ "doi": "https://doi.org/10.25493/36FR-C95",
+ "synonyms": [],
+ "rgb": null
+ }
}
},
{
@@ -328,26 +463,62 @@
"children": [
{
"name": "SF (Amygdala)",
+ "status": "left hemisphere",
"labelIndex": 5,
"ngId": "MNI152_V25_LEFT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "SF (Amygdala)",
"gray": "110"
- },
- "splitHemisphere": "5"
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "SF (Amygdala) [v8.0, ICBM 2009c Asymmetric, left hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "37a6a7d9-5252-4605-a792-6fefe2fde816"
+ }
+ ],
+ "rgb": [
+ 200,
+ 200,
+ 200
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "48929163-bf7b-4471-9f14-991c5225eced"
+ }
}
},
{
"name": "SF (Amygdala)",
+ "status": "right hemisphere",
"labelIndex": 5,
"ngId": "MNI152_V25_RIGHT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "SF (Amygdala)",
"gray": "110"
- },
- "splitHemisphere": "5"
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "SF (Amygdala) [v8.0, ICBM 2009c Asymmetric, right hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "37a6a7d9-5252-4605-a792-6fefe2fde816"
+ }
+ ],
+ "rgb": [
+ 200,
+ 200,
+ 200
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "48929163-bf7b-4471-9f14-991c5225eced"
+ }
}
}
],
@@ -363,16 +534,7 @@
}
}
}
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "superficial group",
- "status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null
- }
- }
+ ]
},
{
"name": "fiber masses",
@@ -382,26 +544,62 @@
"children": [
{
"name": "VTM (Amygdala)",
+ "status": "left hemisphere",
"labelIndex": 109,
"ngId": "MNI152_V25_LEFT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "VTM (Amygdala)",
"gray": "83"
- },
- "splitHemisphere": "109"
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "VTM (Amygdala) [v8.0, ICBM 2009c Asymmetric, left hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "9428d48e-f222-4191-96b8-02d3fa6068da"
+ }
+ ],
+ "rgb": [
+ 200,
+ 200,
+ 200
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "a964e6e6-8014-41a2-b975-754d75cbb6f2"
+ }
}
},
{
"name": "VTM (Amygdala)",
+ "status": "right hemisphere",
"labelIndex": 109,
"ngId": "MNI152_V25_RIGHT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "VTM (Amygdala)",
"gray": "83"
- },
- "splitHemisphere": "109"
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "VTM (Amygdala) [v8.0, ICBM 2009c Asymmetric, right hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "9428d48e-f222-4191-96b8-02d3fa6068da"
+ }
+ ],
+ "rgb": [
+ 200,
+ 200,
+ 200
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "a964e6e6-8014-41a2-b975-754d75cbb6f2"
+ }
}
}
],
@@ -422,26 +620,62 @@
"children": [
{
"name": "IF (Amygdala)",
+ "status": "left hemisphere",
"labelIndex": 46,
"ngId": "MNI152_V25_LEFT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "IF (Amygdala)",
"gray": "61"
- },
- "splitHemisphere": "46"
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "IF (Amygdala) [v8.1, ICBM 2009c Asymmetric, left hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "3acdb92c-68f0-42db-a7af-9dbb69cbea1d"
+ }
+ ],
+ "rgb": [
+ 200,
+ 200,
+ 200
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "5a1391c8-6056-40e4-a19b-3774df42bd07"
+ }
}
},
{
"name": "IF (Amygdala)",
+ "status": "right hemisphere",
"labelIndex": 46,
"ngId": "MNI152_V25_RIGHT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "IF (Amygdala)",
"gray": "61"
- },
- "splitHemisphere": "46"
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "IF (Amygdala) [v8.1, ICBM 2009c Asymmetric, right hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "3acdb92c-68f0-42db-a7af-9dbb69cbea1d"
+ }
+ ],
+ "rgb": [
+ 200,
+ 200,
+ 200
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "5a1391c8-6056-40e4-a19b-3774df42bd07"
+ }
}
}
],
@@ -462,26 +696,62 @@
"children": [
{
"name": "MF (Amygdala)",
+ "status": "left hemisphere",
"labelIndex": 123,
"ngId": "MNI152_V25_LEFT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "MF (Amygdala)",
"gray": "104"
- },
- "splitHemisphere": "123"
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "MF (Amygdala) [v8.1, ICBM 2009c Asymmetric, left hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "1ea87428-a211-439f-b258-40fa3e3363c9"
+ }
+ ],
+ "rgb": [
+ 200,
+ 200,
+ 200
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "3741c788-9412-4b8e-9ab4-9ca2d3a715ca"
+ }
}
},
{
"name": "MF (Amygdala)",
+ "status": "right hemisphere",
"labelIndex": 123,
"ngId": "MNI152_V25_RIGHT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "MF (Amygdala)",
"gray": "104"
- },
- "splitHemisphere": "123"
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "MF (Amygdala) [v8.1, ICBM 2009c Asymmetric, right hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "1ea87428-a211-439f-b258-40fa3e3363c9"
+ }
+ ],
+ "rgb": [
+ 200,
+ 200,
+ 200
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "3741c788-9412-4b8e-9ab4-9ca2d3a715ca"
+ }
}
}
],
@@ -497,16 +767,7 @@
}
}
}
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "fiber masses",
- "status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null
- }
- }
+ ]
},
{
"name": "centromedial group",
@@ -516,26 +777,62 @@
"children": [
{
"name": "CM (Amygdala)",
+ "status": "left hemisphere",
"labelIndex": 85,
"ngId": "MNI152_V25_LEFT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "CM (Amygdala)",
"gray": "44"
- },
- "splitHemisphere": "85"
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "CM (Amygdala) [v8.0, ICBM 2009c Asymmetric, left hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "21ed6af0-5c39-4153-a3b8-8983530436ac"
+ }
+ ],
+ "rgb": [
+ 200,
+ 200,
+ 200
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "7aba8aef-6430-4fa7-ab54-8ecac558faed"
+ }
}
},
{
"name": "CM (Amygdala)",
+ "status": "right hemisphere",
"labelIndex": 85,
"ngId": "MNI152_V25_RIGHT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "CM (Amygdala)",
"gray": "44"
- },
- "splitHemisphere": "85"
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "CM (Amygdala) [v8.0, ICBM 2009c Asymmetric, right hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "21ed6af0-5c39-4153-a3b8-8983530436ac"
+ }
+ ],
+ "rgb": [
+ 200,
+ 200,
+ 200
+ ],
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@@ -1066,38 +1702,74 @@
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@@ -1106,26 +1778,62 @@
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@@ -1146,26 +1854,62 @@
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@@ -1186,26 +1930,62 @@
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"ngId": "MNI152_V25_LEFT_NG_SPLIT_HEMISPHERE",
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@@ -1221,16 +2001,7 @@
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@@ -1240,26 +2011,62 @@
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@@ -1280,26 +2087,62 @@
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@@ -1320,28 +2163,64 @@
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@@ -1360,26 +2239,62 @@
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@@ -1400,26 +2315,62 @@
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@@ -1440,26 +2391,62 @@
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@@ -1480,26 +2467,62 @@
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@@ -1515,16 +2538,7 @@
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@@ -1828,26 +3085,62 @@
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@@ -1868,26 +3161,62 @@
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@@ -1903,27 +3232,9 @@
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@@ -1936,26 +3247,62 @@
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@@ -1976,26 +3323,62 @@
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@@ -2164,26 +3637,62 @@
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@@ -2204,26 +3713,62 @@
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@@ -2239,16 +3784,7 @@
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@@ -2258,26 +3794,62 @@
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@@ -2298,26 +3870,62 @@
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@@ -2338,26 +3946,62 @@
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@@ -2373,27 +4017,9 @@
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@@ -2406,26 +4032,62 @@
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@@ -2446,26 +4108,62 @@
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@@ -2481,16 +4179,7 @@
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@@ -2500,26 +4189,62 @@
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@@ -2540,27 +4265,63 @@
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@@ -2575,16 +4336,7 @@
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@@ -2594,26 +4346,62 @@
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@@ -2629,16 +4417,7 @@
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},
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"name": "superior frontal sulcus",
@@ -2648,26 +4427,62 @@
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@@ -2683,16 +4498,7 @@
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@@ -2702,26 +4508,62 @@
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@@ -2742,26 +4584,62 @@
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@@ -2777,16 +4655,7 @@
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},
{
"name": "precentral gyrus ",
@@ -2796,37 +4665,73 @@
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"ngId": "MNI152_V25_LEFT_NG_SPLIT_HEMISPHERE",
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- "status": "publicP",
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@@ -2836,26 +4741,62 @@
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"name": "Area 4a (PreCG)",
+ "status": "left hemisphere",
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"ngId": "MNI152_V25_LEFT_NG_SPLIT_HEMISPHERE",
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},
{
"name": "Area 4a (PreCG)",
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"ngId": "MNI152_V25_RIGHT_NG_SPLIT_HEMISPHERE",
"_": {
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@@ -2871,16 +4812,7 @@
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{
"name": "mesial precentral gyrus",
@@ -2890,26 +4822,62 @@
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@@ -2925,16 +4893,7 @@
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},
{
"name": "medial orbitofrontal cortex",
@@ -2944,26 +4903,62 @@
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@@ -2984,26 +4979,62 @@
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@@ -3292,26 +5491,62 @@
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@@ -3412,26 +5719,62 @@
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@@ -3520,26 +5881,62 @@
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@@ -3560,26 +5957,62 @@
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"name": "Area Ig2 (Insula)",
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"ngId": "MNI152_V25_RIGHT_NG_SPLIT_HEMISPHERE",
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@@ -3595,16 +6028,7 @@
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"name": "agranular insula",
@@ -3614,26 +6038,62 @@
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"name": "Area Ia (Insula)",
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"ngId": "MNI152_V25_LEFT_NG_SPLIT_HEMISPHERE",
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@@ -3649,16 +6109,7 @@
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},
{
"name": "dys-agranular insula",
@@ -3668,26 +6119,62 @@
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+ "status": "left hemisphere",
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"ngId": "MNI152_V25_LEFT_NG_SPLIT_HEMISPHERE",
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"name": "Area Id7 (Insula)",
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@@ -3703,16 +6190,7 @@
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"name": "dysgranular insula",
@@ -3722,26 +6200,62 @@
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@@ -3762,26 +6276,62 @@
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"_": {
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@@ -3802,26 +6352,62 @@
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"ngId": "MNI152_V25_LEFT_NG_SPLIT_HEMISPHERE",
"_": {
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},
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"name": "Area Id5 (Insula)",
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"ngId": "MNI152_V25_RIGHT_NG_SPLIT_HEMISPHERE",
"_": {
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@@ -3842,38 +6428,74 @@
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"ngId": "MNI152_V25_LEFT_NG_SPLIT_HEMISPHERE",
"_": {
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},
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"ngId": "MNI152_V25_RIGHT_NG_SPLIT_HEMISPHERE",
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@@ -3882,26 +6504,62 @@
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"ngId": "MNI152_V25_LEFT_NG_SPLIT_HEMISPHERE",
"_": {
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@@ -3922,26 +6580,62 @@
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@@ -3957,27 +6651,9 @@
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},
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@@ -3990,26 +6666,62 @@
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@@ -4124,26 +6899,62 @@
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@@ -4164,26 +6975,62 @@
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@@ -4218,26 +7056,62 @@
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@@ -4258,26 +7132,62 @@
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@@ -4293,16 +7203,7 @@
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@@ -4312,26 +7213,62 @@
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@@ -4352,26 +7289,62 @@
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@@ -4392,26 +7365,62 @@
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@@ -4427,16 +7436,7 @@
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@@ -4446,26 +7446,62 @@
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@@ -4566,26 +7674,62 @@
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@@ -4601,27 +7745,9 @@
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@@ -4634,27 +7760,53 @@
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"ngId": "MNI152_V25_LEFT_NG_SPLIT_HEMISPHERE",
"_": {
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"_": {
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@@ -4862,26 +8100,62 @@
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"ngId": "MNI152_V25_LEFT_NG_SPLIT_HEMISPHERE",
"_": {
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@@ -4902,26 +8176,62 @@
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@@ -4942,26 +8252,62 @@
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@@ -4982,26 +8328,62 @@
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@@ -5102,26 +8556,62 @@
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@@ -5196,27 +8701,63 @@
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@@ -5276,26 +8853,62 @@
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@@ -5316,26 +8929,50 @@
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@@ -5356,26 +8993,50 @@
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@@ -5396,26 +9057,50 @@
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@@ -5436,26 +9121,50 @@
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@@ -5476,26 +9185,62 @@
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+ },
+ "originDatasets": [
+ {
+ "filename": "DG (Hippocampus) [v13.0, ICBM 2009c Asymmetric, right hemisphere]",
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+ }
}
}
],
@@ -5516,66 +9261,138 @@
"children": [
{
"name": "CA2 (Hippocampus)",
+ "status": "left hemisphere",
"labelIndex": 23,
"ngId": "MNI152_V25_LEFT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "CA2 (Hippocampus)",
"gray": "51"
- },
- "splitHemisphere": "23"
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+ },
+ "originDatasets": [
+ {
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+ "kgId": "cf4b3fad-2d45-458b-8bc7-1095983ed1dd"
+ }
}
},
{
"name": "CA2 (Hippocampus)",
+ "status": "right hemisphere",
"labelIndex": 23,
"ngId": "MNI152_V25_RIGHT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "CA2 (Hippocampus)",
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- "splitHemisphere": "23"
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- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "CA2 (Hippocampus)",
- "arealabel": "CA2",
- "status": "publicP",
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- "doi": "https://doi.org/10.1007%2Fs00429-019-02022-4",
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- }
- }
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+ },
+ "originDatasets": [
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+ "filename": "CA2 (Hippocampus) [v13.0, ICBM 2009c Asymmetric, right hemisphere]",
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+ }
+ }
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+ ],
+ "_": {
+ "julichbrain-ontology_25.json": {
+ "name": "CA2 (Hippocampus)",
+ "arealabel": "CA2",
+ "status": "publicP",
+ "labelIndex": "58",
+ "doi": "https://doi.org/10.1007%2Fs00429-019-02022-4",
+ "synonyms": [],
+ "rgb": null
+ }
+ }
+ },
{
"name": "CA1 (Hippocampus)",
"children": [
{
"name": "CA1 (Hippocampus)",
+ "status": "left hemisphere",
"labelIndex": 61,
"ngId": "MNI152_V25_LEFT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "CA1 (Hippocampus)",
"gray": "57"
- },
- "splitHemisphere": "61"
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "CA1 (Hippocampus) [v13.0, ICBM 2009c Asymmetric, left hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
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+ "kgId": "bfc0beb7-310c-4c57-b810-2adc464bd02c"
+ }
}
},
{
"name": "CA1 (Hippocampus)",
+ "status": "right hemisphere",
"labelIndex": 61,
"ngId": "MNI152_V25_RIGHT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "CA1 (Hippocampus)",
"gray": "56"
- },
- "splitHemisphere": "61"
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "CA1 (Hippocampus) [v13.0, ICBM 2009c Asymmetric, right hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
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+ "kgId": "bfc0beb7-310c-4c57-b810-2adc464bd02c"
+ }
}
}
],
@@ -5591,49 +9408,13 @@
}
}
}
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "hippocampal formation",
- "status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null
- }
- }
- }
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "limbic lobe",
- "status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null
+ ]
}
- }
- }
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "cerebral cortex",
- "status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null
+ ]
}
- }
- }
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "telencephalon",
- "status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null
+ ]
}
- }
+ ]
},
{
"name": "metencephalon",
@@ -5652,26 +9433,62 @@
"children": [
{
"name": "Interposed Nucleus (Cerebellum)",
+ "status": "left hemisphere",
"labelIndex": 30,
"ngId": "MNI152_V25_LEFT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "Interposed Nucleus (Cerebellum)",
"gray": "109"
- },
- "splitHemisphere": "30"
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "Interposed Nucleus (Cerebellum) [v6.2, ICBM 2009c Asymmetric, left hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "658a7f71-1b94-4f4a-8f15-726043bbb52a"
+ }
+ ],
+ "rgb": [
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+ 200,
+ 200
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "85e7bb13-4b73-4f6f-8222-3adb7b800788"
+ }
}
},
{
"name": "Interposed Nucleus (Cerebellum)",
+ "status": "right hemisphere",
"labelIndex": 30,
"ngId": "MNI152_V25_RIGHT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "Interposed Nucleus (Cerebellum)",
"gray": "109"
- },
- "splitHemisphere": "30"
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "Interposed Nucleus (Cerebellum) [v6.2, ICBM 2009c Asymmetric, right hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "658a7f71-1b94-4f4a-8f15-726043bbb52a"
+ }
+ ],
+ "rgb": [
+ 200,
+ 200,
+ 200
+ ],
+ "fullId": {
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+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "85e7bb13-4b73-4f6f-8222-3adb7b800788"
+ }
}
}
],
@@ -5687,16 +9504,7 @@
}
}
}
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "globose nucleus",
- "status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null
- }
- }
+ ]
},
{
"name": "dentate nucleus",
@@ -5706,26 +9514,62 @@
"children": [
{
"name": "Dorsal Dentate Nucleus (Cerebellum)",
+ "status": "left hemisphere",
"labelIndex": 111,
"ngId": "MNI152_V25_LEFT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "Dorsal Dentate Nucleus (Cerebellum)",
"gray": "16"
- },
- "splitHemisphere": "111"
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "Dorsal Dentate Nucleus (Cerebellum) [v6.2, ICBM 2009c Asymmetric, left hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "870cdd4a-fdb4-4d70-9c3d-d459a122c845"
+ }
+ ],
+ "rgb": [
+ 200,
+ 200,
+ 200
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "58095aef-da69-43d4-887c-009c095cecce"
+ }
}
},
{
"name": "Dorsal Dentate Nucleus (Cerebellum)",
+ "status": "right hemisphere",
"labelIndex": 111,
"ngId": "MNI152_V25_RIGHT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "Dorsal Dentate Nucleus (Cerebellum)",
"gray": "16"
- },
- "splitHemisphere": "111"
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "Dorsal Dentate Nucleus (Cerebellum) [v6.2, ICBM 2009c Asymmetric, right hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "870cdd4a-fdb4-4d70-9c3d-d459a122c845"
+ }
+ ],
+ "rgb": [
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+ ],
+ "fullId": {
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+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "58095aef-da69-43d4-887c-009c095cecce"
+ }
}
}
],
@@ -5746,26 +9590,62 @@
"children": [
{
"name": "Ventral Dentate Nucleus (Cerebellum)",
+ "status": "left hemisphere",
"labelIndex": 38,
"ngId": "MNI152_V25_LEFT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "Ventral Dentate Nucleus (Cerebellum)",
"gray": "65"
- },
- "splitHemisphere": "38"
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "Ventral Dentate Nucleus (Cerebellum) [v6.2, ICBM 2009c Asymmetric, left hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "d3e0ae99-49f4-4bb1-a394-c9c12016ed2f"
+ }
+ ],
+ "rgb": [
+ 200,
+ 200,
+ 200
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "57282342-5a75-4e07-bcdc-2d368c517b71"
+ }
}
},
{
"name": "Ventral Dentate Nucleus (Cerebellum)",
+ "status": "right hemisphere",
"labelIndex": 38,
"ngId": "MNI152_V25_RIGHT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "Ventral Dentate Nucleus (Cerebellum)",
"gray": "65"
- },
- "splitHemisphere": "38"
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "Ventral Dentate Nucleus (Cerebellum) [v6.2, ICBM 2009c Asymmetric, right hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "d3e0ae99-49f4-4bb1-a394-c9c12016ed2f"
+ }
+ ],
+ "rgb": [
+ 200,
+ 200,
+ 200
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "57282342-5a75-4e07-bcdc-2d368c517b71"
+ }
}
}
],
@@ -5781,16 +9661,7 @@
}
}
}
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "dentate nucleus",
- "status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null
- }
- }
+ ]
},
{
"name": "fastigial nucleus",
@@ -5800,26 +9671,62 @@
"children": [
{
"name": "Fastigial Nucleus (Cerebellum)",
+ "status": "left hemisphere",
"labelIndex": 89,
"ngId": "MNI152_V25_LEFT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "Fastigial Nucleus (Cerebellum)",
"gray": "103"
- },
- "splitHemisphere": "89"
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "Fastigial Nucleus (Cerebellum) [v6.2, ICBM 2009c Asymmetric, left hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "dec5c207-c0d9-4f25-a333-1db039c570cb"
+ }
+ ],
+ "rgb": [
+ 200,
+ 200,
+ 200
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "e8abfe3d-8b64-45c2-8853-314d82873273"
+ }
}
},
{
"name": "Fastigial Nucleus (Cerebellum)",
+ "status": "right hemisphere",
"labelIndex": 89,
"ngId": "MNI152_V25_RIGHT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "Fastigial Nucleus (Cerebellum)",
"gray": "102"
- },
- "splitHemisphere": "89"
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "Fastigial Nucleus (Cerebellum) [v6.2, ICBM 2009c Asymmetric, right hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "dec5c207-c0d9-4f25-a333-1db039c570cb"
+ }
+ ],
+ "rgb": [
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+ 200,
+ 200
+ ],
+ "fullId": {
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+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "e8abfe3d-8b64-45c2-8853-314d82873273"
+ }
}
}
],
@@ -5835,16 +9742,7 @@
}
}
}
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "fastigial nucleus",
- "status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null
- }
- }
+ ]
},
{
"name": "emboliform nucleus",
@@ -5854,26 +9752,62 @@
"children": [
{
"name": "Interposed Nucleus (Cerebellum)",
+ "status": "left hemisphere",
"labelIndex": 30,
"ngId": "MNI152_V25_LEFT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "Interposed Nucleus (Cerebellum)",
"gray": "109"
- },
- "splitHemisphere": "30"
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "Interposed Nucleus (Cerebellum) [v6.2, ICBM 2009c Asymmetric, left hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "658a7f71-1b94-4f4a-8f15-726043bbb52a"
+ }
+ ],
+ "rgb": [
+ 200,
+ 200,
+ 200
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "85e7bb13-4b73-4f6f-8222-3adb7b800788"
+ }
}
},
{
"name": "Interposed Nucleus (Cerebellum)",
+ "status": "right hemisphere",
"labelIndex": 30,
"ngId": "MNI152_V25_RIGHT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "Interposed Nucleus (Cerebellum)",
"gray": "109"
- },
- "splitHemisphere": "30"
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "Interposed Nucleus (Cerebellum) [v6.2, ICBM 2009c Asymmetric, right hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "658a7f71-1b94-4f4a-8f15-726043bbb52a"
+ }
+ ],
+ "rgb": [
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+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "85e7bb13-4b73-4f6f-8222-3adb7b800788"
+ }
}
}
],
@@ -5889,53 +9823,17 @@
}
}
}
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "emboliform nucleus",
- "status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null
- }
- }
- }
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "cerebellar nuclei",
- "status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null
+ ]
}
- }
- }
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "cerebellum",
- "status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null
+ ]
}
- }
- }
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "metencephalon",
- "status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null
+ ]
}
- }
+ ]
}
],
"_": {
- "@src": "https://gin.g-node.org/FZJ-INM1-BDA/20201202_JulichBrainHierarchy/src/07a76da90bdbd35e56a01de817befbe6c12f91da/output/nehubaUI/icbm_regions.json"
+ "@src": "https://gin.g-node.org/FZJ-INM1-BDA/20201204_JulichBrainV3_0_hemisphereSplit_metadata/src/eebf8ef90078fb722456eb5e77eb000ae09db776/output/nehubaUI/julich-brain-v3.0-icbm152.json"
}
},
{
diff --git a/src/res/ext/colin.json b/src/res/ext/colin.json
index 44adce1d9..615812921 100644
--- a/src/res/ext/colin.json
+++ b/src/res/ext/colin.json
@@ -57,26 +57,62 @@
"children": [
{
"name": "Ch 123 (Basal Forebrain)",
+ "status": "left hemisphere",
"labelIndex": 62,
"ngId": "COLIN_V25_LEFT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "Ch 123 (Basal Forebrain)",
"gray": "79"
- },
- "splitHemisphere": "62"
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "Ch 123 (Basal Forebrain) [v4.2, Colin 27, left hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "147aaab9-d5f2-48db-80f3-95adc9e7e8a6"
+ }
+ ],
+ "rgb": [
+ 200,
+ 200,
+ 200
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "bb111a95-e04c-4987-8254-4af4ed8b0022"
+ }
}
},
{
"name": "Ch 123 (Basal Forebrain)",
+ "status": "right hemisphere",
"labelIndex": 62,
"ngId": "COLIN_V25_RIGHT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "Ch 123 (Basal Forebrain)",
"gray": "79"
- },
- "splitHemisphere": "62"
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "Ch 123 (Basal Forebrain) [v4.2, Colin 27, right hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "147aaab9-d5f2-48db-80f3-95adc9e7e8a6"
+ }
+ ],
+ "rgb": [
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+ "fullId": {
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+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "bb111a95-e04c-4987-8254-4af4ed8b0022"
+ }
}
}
],
@@ -92,16 +128,7 @@
}
}
}
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "magnocellular group within septum",
- "status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null
- }
- }
+ ]
},
{
"name": "sublenticular part of basal forebrain",
@@ -111,26 +138,62 @@
"children": [
{
"name": "Ch 4 (Basal Forebrain)",
+ "status": "left hemisphere",
"labelIndex": 97,
"ngId": "COLIN_V25_LEFT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "Ch 4 (Basal Forebrain)",
"gray": "13"
- },
- "splitHemisphere": "97"
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "Ch 4 (Basal Forebrain) [v4.2, Colin 27, left hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "791a14c8-b899-414f-b237-27574a4cce7e"
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+ ],
+ "rgb": [
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+ "kgId": "a5c9d95f-8e7c-4454-91b6-a790387370fc"
+ }
}
},
{
"name": "Ch 4 (Basal Forebrain)",
+ "status": "right hemisphere",
"labelIndex": 97,
"ngId": "COLIN_V25_RIGHT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "Ch 4 (Basal Forebrain)",
"gray": "13"
- },
- "splitHemisphere": "97"
+ }
+ },
+ "originDatasets": [
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@@ -146,16 +209,7 @@
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"name": "magnocellular group within horizontal limb of diagnoal band",
@@ -165,26 +219,62 @@
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"name": "Ch 123 (Basal Forebrain)",
+ "status": "left hemisphere",
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"ngId": "COLIN_V25_LEFT_NG_SPLIT_HEMISPHERE",
"_": {
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"name": "Ch 123 (Basal Forebrain)",
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"_": {
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@@ -200,27 +290,9 @@
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},
{
"name": "amygdala",
@@ -233,26 +305,62 @@
"children": [
{
"name": "LB (Amygdala)",
+ "status": "left hemisphere",
"labelIndex": 41,
"ngId": "COLIN_V25_LEFT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "LB (Amygdala)",
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},
{
"name": "LB (Amygdala)",
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"ngId": "COLIN_V25_RIGHT_NG_SPLIT_HEMISPHERE",
"_": {
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@@ -268,16 +376,7 @@
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- "status": null,
- "labelIndex": null,
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},
{
"name": "superficial group",
@@ -287,39 +386,75 @@
"children": [
{
"name": "CM (Amygdala)",
+ "status": "left hemisphere",
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"ngId": "COLIN_V25_LEFT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "CM (Amygdala)",
"gray": "44"
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},
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"ngId": "COLIN_V25_RIGHT_NG_SPLIT_HEMISPHERE",
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@@ -327,26 +462,62 @@
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"ngId": "COLIN_V25_LEFT_NG_SPLIT_HEMISPHERE",
"_": {
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},
{
"name": "SF (Amygdala)",
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"ngId": "COLIN_V25_RIGHT_NG_SPLIT_HEMISPHERE",
"_": {
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@@ -362,16 +533,7 @@
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},
{
"name": "fiber masses",
@@ -381,26 +543,62 @@
"children": [
{
"name": "VTM (Amygdala)",
+ "status": "left hemisphere",
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"ngId": "COLIN_V25_LEFT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "VTM (Amygdala)",
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},
{
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"ngId": "COLIN_V25_RIGHT_NG_SPLIT_HEMISPHERE",
"_": {
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}
],
@@ -421,26 +619,62 @@
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+ "status": "left hemisphere",
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"ngId": "COLIN_V25_LEFT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "IF (Amygdala)",
"gray": "61"
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},
{
"name": "IF (Amygdala)",
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"ngId": "COLIN_V25_RIGHT_NG_SPLIT_HEMISPHERE",
"_": {
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+ "originDatasets": [
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}
],
@@ -461,26 +695,62 @@
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+ "status": "left hemisphere",
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"ngId": "COLIN_V25_LEFT_NG_SPLIT_HEMISPHERE",
"_": {
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},
{
"name": "MF (Amygdala)",
+ "status": "right hemisphere",
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"ngId": "COLIN_V25_RIGHT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "MF (Amygdala)",
"gray": "104"
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- "splitHemisphere": "123"
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+ "originDatasets": [
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@@ -496,16 +766,7 @@
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- "status": null,
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},
{
"name": "centromedial group",
@@ -515,26 +776,62 @@
"children": [
{
"name": "CM (Amygdala)",
+ "status": "left hemisphere",
"labelIndex": 85,
"ngId": "COLIN_V25_LEFT_NG_SPLIT_HEMISPHERE",
"_": {
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"name": "CM (Amygdala)",
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},
{
"name": "CM (Amygdala)",
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"ngId": "COLIN_V25_RIGHT_NG_SPLIT_HEMISPHERE",
"_": {
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"name": "CM (Amygdala)",
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@@ -550,38 +847,11 @@
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- "_": {
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- "labelIndex": null,
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- }
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},
{
"name": "cerebral cortex",
@@ -597,26 +867,62 @@
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+ "status": "left hemisphere",
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"ngId": "COLIN_V25_LEFT_NG_SPLIT_HEMISPHERE",
"_": {
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"name": "Area 5L (SPL)",
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{
"name": "Area 5L (SPL)",
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"ngId": "COLIN_V25_RIGHT_NG_SPLIT_HEMISPHERE",
"_": {
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@@ -637,26 +943,50 @@
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"ngId": "COLIN_V25_LEFT_NG_SPLIT_HEMISPHERE",
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@@ -757,26 +1159,62 @@
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@@ -837,26 +1311,62 @@
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@@ -872,16 +1382,7 @@
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@@ -891,26 +1392,62 @@
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@@ -931,26 +1468,62 @@
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@@ -971,26 +1544,62 @@
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@@ -1011,26 +1620,62 @@
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@@ -1046,16 +1691,7 @@
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@@ -1065,38 +1701,74 @@
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@@ -1105,26 +1777,62 @@
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@@ -1145,26 +1853,62 @@
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@@ -1185,26 +1929,62 @@
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@@ -1239,26 +2010,62 @@
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@@ -1279,26 +2086,62 @@
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@@ -1319,28 +2162,64 @@
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@@ -1359,26 +2238,62 @@
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@@ -1399,26 +2314,62 @@
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@@ -1439,26 +2390,62 @@
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@@ -1479,26 +2466,62 @@
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@@ -1514,16 +2537,7 @@
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@@ -1533,51 +2547,78 @@
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@@ -1587,26 +2628,62 @@
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@@ -1867,26 +3160,62 @@
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@@ -1902,27 +3231,9 @@
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@@ -1935,26 +3246,62 @@
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@@ -1975,26 +3322,62 @@
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@@ -2050,16 +3469,7 @@
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@@ -2069,26 +3479,62 @@
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@@ -2109,26 +3555,62 @@
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@@ -2238,16 +3783,7 @@
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@@ -2257,26 +3793,62 @@
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@@ -2297,26 +3869,62 @@
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@@ -2337,26 +3945,62 @@
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@@ -2372,27 +4016,9 @@
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@@ -2405,26 +4031,62 @@
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@@ -2445,26 +4107,62 @@
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@@ -2480,16 +4178,7 @@
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@@ -2499,26 +4188,62 @@
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@@ -2539,27 +4264,63 @@
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@@ -2593,26 +4345,62 @@
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@@ -2628,16 +4416,7 @@
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},
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@@ -2647,26 +4426,62 @@
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@@ -2682,16 +4497,7 @@
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},
{
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@@ -2701,26 +4507,62 @@
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@@ -2741,26 +4583,62 @@
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@@ -2776,16 +4654,7 @@
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},
{
"name": "precentral gyrus ",
@@ -2795,37 +4664,73 @@
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@@ -2835,26 +4740,62 @@
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"ngId": "COLIN_V25_LEFT_NG_SPLIT_HEMISPHERE",
"_": {
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},
{
"name": "Area 4a (PreCG)",
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"ngId": "COLIN_V25_RIGHT_NG_SPLIT_HEMISPHERE",
"_": {
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@@ -2870,16 +4811,7 @@
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},
{
"name": "mesial precentral gyrus",
@@ -2889,26 +4821,62 @@
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{
"name": "Area 6mp (SMA, mesial SFG)",
+ "status": "left hemisphere",
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"ngId": "COLIN_V25_LEFT_NG_SPLIT_HEMISPHERE",
"_": {
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@@ -2924,16 +4892,7 @@
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},
{
"name": "medial orbitofrontal cortex",
@@ -2943,26 +4902,62 @@
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{
"name": "Area Fo1 (OFC)",
+ "status": "left hemisphere",
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"ngId": "COLIN_V25_LEFT_NG_SPLIT_HEMISPHERE",
"_": {
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"_": {
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@@ -2983,26 +4978,62 @@
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@@ -3023,26 +5054,62 @@
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"_": {
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@@ -3058,16 +5125,7 @@
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},
{
"name": "frontal operculum ",
@@ -3077,26 +5135,62 @@
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+ "status": "left hemisphere",
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"ngId": "COLIN_V25_LEFT_NG_SPLIT_HEMISPHERE",
"_": {
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"ngId": "COLIN_V25_RIGHT_NG_SPLIT_HEMISPHERE",
"_": {
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@@ -3117,27 +5211,53 @@
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@@ -3272,16 +5480,7 @@
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@@ -3291,26 +5490,62 @@
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@@ -3331,27 +5566,63 @@
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@@ -3411,26 +5718,62 @@
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@@ -3446,27 +5789,9 @@
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},
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@@ -3479,26 +5804,62 @@
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@@ -3519,26 +5880,62 @@
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@@ -3559,26 +5956,62 @@
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@@ -3594,16 +6027,7 @@
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@@ -3613,26 +6037,62 @@
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@@ -3648,16 +6108,7 @@
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@@ -3667,26 +6118,62 @@
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@@ -3721,26 +6199,62 @@
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@@ -3761,26 +6275,62 @@
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@@ -3801,26 +6351,62 @@
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@@ -3841,38 +6427,74 @@
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@@ -3881,26 +6503,62 @@
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@@ -3921,26 +6579,62 @@
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@@ -3956,27 +6650,9 @@
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@@ -3989,26 +6665,62 @@
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@@ -4029,26 +6741,62 @@
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@@ -4064,16 +6812,7 @@
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@@ -4083,37 +6822,73 @@
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@@ -4123,26 +6898,62 @@
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@@ -4311,26 +7212,62 @@
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@@ -4391,26 +7364,62 @@
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@@ -4445,26 +7445,62 @@
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@@ -4485,26 +7521,62 @@
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@@ -4525,26 +7597,62 @@
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@@ -4565,26 +7673,62 @@
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@@ -4600,27 +7744,9 @@
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@@ -4633,27 +7759,53 @@
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@@ -4861,26 +8099,62 @@
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@@ -4901,26 +8175,62 @@
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@@ -4941,26 +8251,62 @@
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@@ -4981,26 +8327,62 @@
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@@ -5021,26 +8403,62 @@
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@@ -5061,26 +8479,62 @@
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@@ -5101,26 +8555,62 @@
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@@ -5136,16 +8626,7 @@
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@@ -5155,26 +8636,50 @@
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@@ -5475,26 +9184,62 @@
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@@ -5515,66 +9260,138 @@
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@@ -5651,26 +9432,62 @@
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"ngId": "COLIN_V25_RIGHT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "Interposed Nucleus (Cerebellum)",
"gray": "109"
- },
- "splitHemisphere": "30"
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "Interposed Nucleus (Cerebellum) [v6.2, Colin 27, right hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "658a7f71-1b94-4f4a-8f15-726043bbb52a"
+ }
+ ],
+ "rgb": [
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+ "fullId": {
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+ "kgId": "85e7bb13-4b73-4f6f-8222-3adb7b800788"
+ }
}
}
],
@@ -5686,16 +9503,7 @@
}
}
}
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "globose nucleus",
- "status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null
- }
- }
+ ]
},
{
"name": "dentate nucleus",
@@ -5705,26 +9513,62 @@
"children": [
{
"name": "Dorsal Dentate Nucleus (Cerebellum)",
+ "status": "left hemisphere",
"labelIndex": 111,
"ngId": "COLIN_V25_LEFT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "Dorsal Dentate Nucleus (Cerebellum)",
"gray": "16"
- },
- "splitHemisphere": "111"
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "Dorsal Dentate Nucleus (Cerebellum) [v6.2, Colin 27, left hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "870cdd4a-fdb4-4d70-9c3d-d459a122c845"
+ }
+ ],
+ "rgb": [
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+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "58095aef-da69-43d4-887c-009c095cecce"
+ }
}
},
{
"name": "Dorsal Dentate Nucleus (Cerebellum)",
+ "status": "right hemisphere",
"labelIndex": 111,
"ngId": "COLIN_V25_RIGHT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "Dorsal Dentate Nucleus (Cerebellum)",
"gray": "16"
- },
- "splitHemisphere": "111"
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "Dorsal Dentate Nucleus (Cerebellum) [v6.2, Colin 27, right hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "870cdd4a-fdb4-4d70-9c3d-d459a122c845"
+ }
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+ "rgb": [
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+ "fullId": {
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+ "kgId": "58095aef-da69-43d4-887c-009c095cecce"
+ }
}
}
],
@@ -5745,26 +9589,62 @@
"children": [
{
"name": "Ventral Dentate Nucleus (Cerebellum)",
+ "status": "left hemisphere",
"labelIndex": 38,
"ngId": "COLIN_V25_LEFT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "Ventral Dentate Nucleus (Cerebellum)",
"gray": "65"
- },
- "splitHemisphere": "38"
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "Ventral Dentate Nucleus (Cerebellum) [v6.2, Colin 27, left hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "d3e0ae99-49f4-4bb1-a394-c9c12016ed2f"
+ }
+ ],
+ "rgb": [
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+ "fullId": {
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+ "kgId": "57282342-5a75-4e07-bcdc-2d368c517b71"
+ }
}
},
{
"name": "Ventral Dentate Nucleus (Cerebellum)",
+ "status": "right hemisphere",
"labelIndex": 38,
"ngId": "COLIN_V25_RIGHT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "Ventral Dentate Nucleus (Cerebellum)",
"gray": "65"
- },
- "splitHemisphere": "38"
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "Ventral Dentate Nucleus (Cerebellum) [v6.2, Colin 27, right hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "d3e0ae99-49f4-4bb1-a394-c9c12016ed2f"
+ }
+ ],
+ "rgb": [
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+ ],
+ "fullId": {
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+ "kgId": "57282342-5a75-4e07-bcdc-2d368c517b71"
+ }
}
}
],
@@ -5780,16 +9660,7 @@
}
}
}
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "dentate nucleus",
- "status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null
- }
- }
+ ]
},
{
"name": "fastigial nucleus",
@@ -5799,26 +9670,62 @@
"children": [
{
"name": "Fastigial Nucleus (Cerebellum)",
+ "status": "left hemisphere",
"labelIndex": 89,
"ngId": "COLIN_V25_LEFT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "Fastigial Nucleus (Cerebellum)",
"gray": "103"
- },
- "splitHemisphere": "89"
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "Fastigial Nucleus (Cerebellum) [v6.2, Colin 27, left hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "dec5c207-c0d9-4f25-a333-1db039c570cb"
+ }
+ ],
+ "rgb": [
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+ 200,
+ 200
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "e8abfe3d-8b64-45c2-8853-314d82873273"
+ }
}
},
{
"name": "Fastigial Nucleus (Cerebellum)",
+ "status": "right hemisphere",
"labelIndex": 89,
"ngId": "COLIN_V25_RIGHT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "Fastigial Nucleus (Cerebellum)",
"gray": "102"
- },
- "splitHemisphere": "89"
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "Fastigial Nucleus (Cerebellum) [v6.2, Colin 27, right hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "dec5c207-c0d9-4f25-a333-1db039c570cb"
+ }
+ ],
+ "rgb": [
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+ 200,
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+ ],
+ "fullId": {
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+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "e8abfe3d-8b64-45c2-8853-314d82873273"
+ }
}
}
],
@@ -5834,16 +9741,7 @@
}
}
}
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "fastigial nucleus",
- "status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null
- }
- }
+ ]
},
{
"name": "emboliform nucleus",
@@ -5853,26 +9751,62 @@
"children": [
{
"name": "Interposed Nucleus (Cerebellum)",
+ "status": "left hemisphere",
"labelIndex": 30,
"ngId": "COLIN_V25_LEFT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "Interposed Nucleus (Cerebellum)",
"gray": "109"
- },
- "splitHemisphere": "30"
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "Interposed Nucleus (Cerebellum) [v6.2, Colin 27, left hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "658a7f71-1b94-4f4a-8f15-726043bbb52a"
+ }
+ ],
+ "rgb": [
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+ ],
+ "fullId": {
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+ "kgId": "85e7bb13-4b73-4f6f-8222-3adb7b800788"
+ }
}
},
{
"name": "Interposed Nucleus (Cerebellum)",
+ "status": "right hemisphere",
"labelIndex": 30,
"ngId": "COLIN_V25_RIGHT_NG_SPLIT_HEMISPHERE",
"_": {
"xml": {
"name": "Interposed Nucleus (Cerebellum)",
"gray": "109"
- },
- "splitHemisphere": "30"
+ }
+ },
+ "originDatasets": [
+ {
+ "filename": "Interposed Nucleus (Cerebellum) [v6.2, Colin 27, right hemisphere]",
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "658a7f71-1b94-4f4a-8f15-726043bbb52a"
+ }
+ ],
+ "rgb": [
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+ "fullId": {
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+ "kgId": "85e7bb13-4b73-4f6f-8222-3adb7b800788"
+ }
}
}
],
@@ -5888,53 +9822,17 @@
}
}
}
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "emboliform nucleus",
- "status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null
- }
- }
- }
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "cerebellar nuclei",
- "status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null
+ ]
}
- }
- }
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "cerebellum",
- "status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null
+ ]
}
- }
- }
- ],
- "_": {
- "julichbrain-ontology_25.json": {
- "name": "metencephalon",
- "status": null,
- "labelIndex": null,
- "synonyms": [],
- "rgb": null
+ ]
}
- }
+ ]
}
],
"_": {
- "@src": "https://gin.g-node.org/FZJ-INM1-BDA/20201202_JulichBrainHierarchy/src/07a76da90bdbd35e56a01de817befbe6c12f91da/output/nehubaUI/icbm_regions.json"
+ "@src": "https://gin.g-node.org/FZJ-INM1-BDA/20201204_JulichBrainV3_0_hemisphereSplit_metadata/src/eebf8ef90078fb722456eb5e77eb000ae09db776/output/nehubaUI/julich-brain-v3.0-colin.json"
}
},
{
--
GitLab