From 267d30a40216ba3b87c39c5e78d4f2758f523cfe Mon Sep 17 00:00:00 2001
From: Xiao Gui <xgui3783@gmail.com>
Date: Wed, 2 Dec 2020 19:36:35 +0100
Subject: [PATCH] exmpt julich brain v2.5 (breaks tests, need to add fullId to
regions, need to add origin datasets)
---
src/res/ext/MNI152.json | 11596 +++-------------
src/res/ext/MNI152NehubaConfig.json | 18 +-
src/res/ext/atlas/atlas_multiLevelHuman.json | 4 +-
src/res/ext/bigbrain.json | 2 +-
src/res/ext/colin.json | 12116 +++--------------
src/res/ext/colinNehubaConfig.json | 8 +-
src/services/effect/effect.spec.ts | 2 +-
7 files changed, 3714 insertions(+), 20032 deletions(-)
diff --git a/src/res/ext/MNI152.json b/src/res/ext/MNI152.json
index f1fd58659..8c501de23 100644
--- a/src/res/ext/MNI152.json
+++ b/src/res/ext/MNI152.json
@@ -12,7 +12,7 @@
{
"fullId": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579",
"@id": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579",
- "name": "Cytoarchitectonic Maps - v2.4",
+ "name": "Cytoarchitectonic Maps - v2.5",
"auxillaryMeshIndices": [
65535
],
@@ -43,128 +43,57 @@
"regions": [
{
"name": "telencephalon",
- "status": null,
"children": [
{
"name": "cerebral nuclei",
- "status": null,
"children": [
{
"name": "basal forebrain",
- "status": null,
"children": [
{
"name": "magnocellular group within septum",
- "status": null,
"children": [
{
"name": "Ch 123 (Basal Forebrain)",
- "status": "publicP",
"children": [
{
"name": "Ch 123 (Basal Forebrain)",
- "status": "left hemisphere",
- "labelIndex": 76,
- "rgb": [
- 200,
- 200,
- 200
- ],
- "ngId": "ICBM152_V24_LEFT_NG",
- "originDatasets": [
- {
- "filename": "Ch 123 (Basal Forebrain) [v4.2, ICBM 2009c Asymmetric, left hemisphere]",
- "kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "147aaab9-d5f2-48db-80f3-95adc9e7e8a6"
- }
- ],
- "fullId": {
- "kg": {
- "kgSchema": "minds/core/parcellationregion/v1.0.0",
- "kgId": "bb111a95-e04c-4987-8254-4af4ed8b0022"
- }
- },
+ "labelIndex": 79,
+ "ngId": "ICBM152_V25_LEFT_NG",
"_": {
"xml": {
"name": "Ch 123 (Basal Forebrain)",
- "id": "286",
- "grayvalue": "76"
- },
- "dat": {
- "colors": false,
- "names": false
+ "gray": "79"
}
- },
- "position": [
- -2022508,
- 4536977,
- -6257235
- ]
+ }
},
{
"name": "Ch 123 (Basal Forebrain)",
- "status": "right hemisphere",
- "labelIndex": 77,
- "rgb": [
- 200,
- 200,
- 200
- ],
- "ngId": "ICBM152_V24_RIGHT_NG",
- "originDatasets": [
- {
- "filename": "Ch 123 (Basal Forebrain) [v4.2, ICBM 2009c Asymmetric, right hemisphere]",
- "kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "147aaab9-d5f2-48db-80f3-95adc9e7e8a6"
- }
- ],
- "fullId": {
- "kg": {
- "kgSchema": "minds/core/parcellationregion/v1.0.0",
- "kgId": "bb111a95-e04c-4987-8254-4af4ed8b0022"
- }
- },
+ "labelIndex": 79,
+ "ngId": "ICBM152_V25_RIGHT_NG",
"_": {
"xml": {
"name": "Ch 123 (Basal Forebrain)",
- "id": "286",
- "grayvalue": "77"
- },
- "dat": {
- "colors": false,
- "names": false
+ "gray": "79"
}
- },
- "position": [
- 1319527,
- 5215976,
- -6062130
- ]
+ }
}
],
"_": {
- "jubrain-ontology_24.json": {
+ "julichbrain-ontology_25.json": {
"name": "Ch 123 (Basal Forebrain)",
"arealabel": "Ch-123",
"status": "publicP",
"labelIndex": "286",
"doi": "https://doi.org/10.25493/7SEP-P2V",
"synonyms": [],
- "rgb": null,
- "kgHref": "https://kg.ebrains.eu/instances/Dataset/147aaab9-d5f2-48db-80f3-95adc9e7e8a6"
- },
- "kgRegion": {
- "alternateOf": [],
- "species": [],
- "name": "Ch 123 (Basal Forebrain)",
- "alias": null,
- "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationregion/v1.0.0/bb111a95-e04c-4987-8254-4af4ed8b0022"
+ "rgb": null
}
}
}
],
"_": {
- "jubrain-ontology_24.json": {
+ "julichbrain-ontology_25.json": {
"name": "magnocellular group within septum",
"status": null,
"labelIndex": null,
@@ -175,116 +104,48 @@
},
{
"name": "sublenticular part of basal forebrain",
- "status": null,
"children": [
{
"name": "Ch 4 (Basal Forebrain)",
- "status": "publicP",
"children": [
{
"name": "Ch 4 (Basal Forebrain)",
- "status": "left hemisphere",
- "labelIndex": 12,
- "rgb": [
- 200,
- 200,
- 200
- ],
- "ngId": "ICBM152_V24_LEFT_NG",
- "originDatasets": [
- {
- "filename": "Ch 4 (Basal Forebrain) [v4.2, ICBM 2009c Asymmetric, left hemisphere]",
- "kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "791a14c8-b899-414f-b237-27574a4cce7e"
- }
- ],
- "fullId": {
- "kg": {
- "kgSchema": "minds/core/parcellationregion/v1.0.0",
- "kgId": "a5c9d95f-8e7c-4454-91b6-a790387370fc"
- }
- },
+ "labelIndex": 13,
+ "ngId": "ICBM152_V25_LEFT_NG",
"_": {
"xml": {
"name": "Ch 4 (Basal Forebrain)",
- "id": "264",
- "grayvalue": "12"
- },
- "dat": {
- "colors": false,
- "names": false
+ "gray": "13"
}
- },
- "position": [
- -19920424,
- -3413793,
- -10827586
- ]
+ }
},
{
"name": "Ch 4 (Basal Forebrain)",
- "status": "right hemisphere",
- "labelIndex": 12,
- "rgb": [
- 200,
- 200,
- 200
- ],
- "ngId": "ICBM152_V24_RIGHT_NG",
- "originDatasets": [
- {
- "filename": "Ch 4 (Basal Forebrain) [v4.2, ICBM 2009c Asymmetric, right hemisphere]",
- "kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "791a14c8-b899-414f-b237-27574a4cce7e"
- }
- ],
- "fullId": {
- "kg": {
- "kgSchema": "minds/core/parcellationregion/v1.0.0",
- "kgId": "a5c9d95f-8e7c-4454-91b6-a790387370fc"
- }
- },
+ "labelIndex": 13,
+ "ngId": "ICBM152_V25_RIGHT_NG",
"_": {
"xml": {
"name": "Ch 4 (Basal Forebrain)",
- "id": "264",
- "grayvalue": "12"
- },
- "dat": {
- "colors": false,
- "names": false
+ "gray": "13"
}
- },
- "position": [
- 17237209,
- -1779070,
- -11279070
- ]
+ }
}
],
"_": {
- "jubrain-ontology_24.json": {
+ "julichbrain-ontology_25.json": {
"name": "Ch 4 (Basal Forebrain)",
"arealabel": "Ch-4",
"status": "publicP",
"labelIndex": "264",
"doi": "https://doi.org/10.25493/VZJ5-8WJ",
"synonyms": [],
- "rgb": null,
- "kgHref": "https://kg.ebrains.eu/search/instances/Dataset/791a14c8-b899-414f-b237-27574a4cce7e"
- },
- "kgRegion": {
- "alternateOf": [],
- "species": [],
- "name": "Ch 4 (Basal Forebrain)",
- "alias": null,
- "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationregion/v1.0.0/a5c9d95f-8e7c-4454-91b6-a790387370fc"
+ "rgb": null
}
}
}
],
"_": {
- "jubrain-ontology_24.json": {
+ "julichbrain-ontology_25.json": {
"name": "sublenticular part of basal forebrain",
"status": null,
"labelIndex": null,
@@ -295,28 +156,48 @@
},
{
"name": "magnocellular group within horizontal limb of diagnoal band",
- "status": null,
"children": [
{
"name": "Ch 123 (Basal Forebrain)",
- "status": "publicP",
- "children": [],
+ "children": [
+ {
+ "name": "Ch 123 (Basal Forebrain)",
+ "labelIndex": 79,
+ "ngId": "ICBM152_V25_LEFT_NG",
+ "_": {
+ "xml": {
+ "name": "Ch 123 (Basal Forebrain)",
+ "gray": "79"
+ }
+ }
+ },
+ {
+ "name": "Ch 123 (Basal Forebrain)",
+ "labelIndex": 79,
+ "ngId": "ICBM152_V25_RIGHT_NG",
+ "_": {
+ "xml": {
+ "name": "Ch 123 (Basal Forebrain)",
+ "gray": "79"
+ }
+ }
+ }
+ ],
"_": {
- "jubrain-ontology_24.json": {
+ "julichbrain-ontology_25.json": {
"name": "Ch 123 (Basal Forebrain)",
"arealabel": "Ch-123",
"status": "publicP",
"labelIndex": "286",
"doi": "https://doi.org/10.25493/7SEP-P2V",
"synonyms": [],
- "rgb": null,
- "kgHref": "https://kg.ebrains.eu/instances/Dataset/147aaab9-d5f2-48db-80f3-95adc9e7e8a6"
+ "rgb": null
}
}
}
],
"_": {
- "jubrain-ontology_24.json": {
+ "julichbrain-ontology_25.json": {
"name": "magnocellular group within horizontal limb of diagnoal band",
"status": null,
"labelIndex": null,
@@ -327,7 +208,7 @@
}
],
"_": {
- "jubrain-ontology_24.json": {
+ "julichbrain-ontology_25.json": {
"name": "basal forebrain",
"status": null,
"labelIndex": null,
@@ -338,120 +219,51 @@
},
{
"name": "amygdala",
- "status": null,
"children": [
{
"name": "laterobasal group",
- "status": null,
"children": [
{
"name": "LB (Amygdala)",
- "status": "publicP",
"children": [
{
"name": "LB (Amygdala)",
- "status": "left hemisphere",
- "labelIndex": 91,
- "rgb": [
- 200,
- 200,
- 200
- ],
- "ngId": "ICBM152_V24_LEFT_NG",
- "originDatasets": [
- {
- "filename": "LB (Amygdala) [v6.4, ICBM 2009c Asymmetric, left hemisphere]",
- "kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "fa4cab6a-1cec-4cec-b481-90aa0cc7d96c"
- }
- ],
- "fullId": {
- "kg": {
- "kgSchema": "minds/core/parcellationregion/v1.0.0",
- "kgId": "708df0fa-e9a4-4c23-bd85-8957f6d30faf"
- }
- },
+ "labelIndex": 94,
+ "ngId": "ICBM152_V25_LEFT_NG",
"_": {
"xml": {
"name": "LB (Amygdala)",
- "id": "187",
- "grayvalue": "91"
- },
- "dat": {
- "colors": false,
- "names": false
+ "gray": "94"
}
- },
- "position": [
- -25800460,
- -3907993,
- -24089132
- ]
+ }
},
{
"name": "LB (Amygdala)",
- "status": "right hemisphere",
- "labelIndex": 91,
- "rgb": [
- 200,
- 200,
- 200
- ],
- "ngId": "ICBM152_V24_RIGHT_NG",
- "originDatasets": [
- {
- "filename": "LB (Amygdala) [v6.4, ICBM 2009c Asymmetric, right hemisphere]",
- "kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "fa4cab6a-1cec-4cec-b481-90aa0cc7d96c"
- }
- ],
- "fullId": {
- "kg": {
- "kgSchema": "minds/core/parcellationregion/v1.0.0",
- "kgId": "708df0fa-e9a4-4c23-bd85-8957f6d30faf"
- }
- },
+ "labelIndex": 94,
+ "ngId": "ICBM152_V25_RIGHT_NG",
"_": {
"xml": {
"name": "LB (Amygdala)",
- "id": "187",
- "grayvalue": "91"
- },
- "dat": {
- "colors": false,
- "names": false
+ "gray": "94"
}
- },
- "position": [
- 25197858,
- -2068683,
- -24565848
- ]
+ }
}
],
"_": {
- "jubrain-ontology_24.json": {
+ "julichbrain-ontology_25.json": {
"name": "LB (Amygdala)",
"arealabel": "LB",
"status": "publicP",
"labelIndex": "187",
"doi": "https://doi.org/10.25493/C3X0-NV3",
"synonyms": [],
- "rgb": null,
- "kgHref": "https://kg.ebrains.eu/search/instances/Dataset/fa4cab6a-1cec-4cec-b481-90aa0cc7d96c"
- },
- "kgRegion": {
- "alternateOf": [],
- "species": [],
- "name": "LB (Amygdala)",
- "alias": null,
- "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationregion/v1.0.0/708df0fa-e9a4-4c23-bd85-8957f6d30faf"
+ "rgb": null
}
}
}
],
"_": {
- "jubrain-ontology_24.json": {
+ "julichbrain-ontology_25.json": {
"name": "laterobasal group",
"status": null,
"labelIndex": null,
@@ -462,221 +274,86 @@
},
{
"name": "superficial group",
- "status": null,
"children": [
{
"name": "CM (Amygdala)",
- "status": "publicP",
"children": [
{
"name": "CM (Amygdala)",
- "status": "left hemisphere",
- "labelIndex": 43,
- "rgb": [
- 200,
- 200,
- 200
- ],
- "ngId": "ICBM152_V24_LEFT_NG",
- "originDatasets": [
- {
- "filename": "CM (Amygdala) [v6.4, ICBM 2009c Asymmetric, left hemisphere]",
- "kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "21ed6af0-5c39-4153-a3b8-8983530436ac"
- }
- ],
- "fullId": {
- "kg": {
- "kgSchema": "minds/core/parcellationregion/v1.0.0",
- "kgId": "7aba8aef-6430-4fa7-ab54-8ecac558faed"
- }
- },
+ "labelIndex": 44,
+ "ngId": "ICBM152_V25_LEFT_NG",
"_": {
"xml": {
"name": "CM (Amygdala)",
- "id": "290",
- "grayvalue": "43"
- },
- "dat": {
- "colors": false,
- "names": false
+ "gray": "44"
}
- },
- "position": [
- -22223317,
- -5577997,
- -13032841
- ]
+ }
},
{
"name": "CM (Amygdala)",
- "status": "right hemisphere",
- "labelIndex": 43,
- "rgb": [
- 200,
- 200,
- 200
- ],
- "ngId": "ICBM152_V24_RIGHT_NG",
- "originDatasets": [
- {
- "filename": "CM (Amygdala) [v6.4, ICBM 2009c Asymmetric, right hemisphere]",
- "kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "21ed6af0-5c39-4153-a3b8-8983530436ac"
- }
- ],
- "fullId": {
- "kg": {
- "kgSchema": "minds/core/parcellationregion/v1.0.0",
- "kgId": "7aba8aef-6430-4fa7-ab54-8ecac558faed"
- }
- },
+ "labelIndex": 44,
+ "ngId": "ICBM152_V25_RIGHT_NG",
"_": {
"xml": {
"name": "CM (Amygdala)",
- "id": "290",
- "grayvalue": "43"
- },
- "dat": {
- "colors": false,
- "names": false
+ "gray": "44"
}
- },
- "position": [
- 22305903,
- -4853309,
- -12962433
- ]
+ }
}
],
"_": {
- "jubrain-ontology_24.json": {
+ "julichbrain-ontology_25.json": {
"name": "CM (Amygdala)",
"arealabel": "CM",
"status": "publicP",
"labelIndex": "290",
"doi": "https://doi.org/10.25493/36FR-C95",
"synonyms": [],
- "rgb": null,
- "kgHref": "https://kg.ebrains.eu/search/instances/Dataset/21ed6af0-5c39-4153-a3b8-8983530436ac"
- },
- "kgRegion": {
- "alternateOf": [],
- "species": [],
- "name": "CM (Amygdala)",
- "alias": null,
- "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationregion/v1.0.0/7aba8aef-6430-4fa7-ab54-8ecac558faed"
+ "rgb": null
}
}
},
{
"name": "SF (Amygdala)",
- "status": "publicP",
"children": [
{
"name": "SF (Amygdala)",
- "status": "left hemisphere",
"labelIndex": 111,
- "rgb": [
- 200,
- 200,
- 200
- ],
- "ngId": "ICBM152_V24_LEFT_NG",
- "originDatasets": [
- {
- "filename": "SF (Amygdala) [v6.4, ICBM 2009c Asymmetric, left hemisphere]",
- "kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "37a6a7d9-5252-4605-a792-6fefe2fde816"
- }
- ],
- "fullId": {
- "kg": {
- "kgSchema": "minds/core/parcellationregion/v1.0.0",
- "kgId": "48929163-bf7b-4471-9f14-991c5225eced"
- }
- },
+ "ngId": "ICBM152_V25_LEFT_NG",
"_": {
"xml": {
"name": "SF (Amygdala)",
- "id": "185",
- "grayvalue": "111"
- },
- "dat": {
- "colors": false,
- "names": false
+ "gray": "111"
}
- },
- "position": [
- -17670130,
- -2203896,
- -20833766
- ]
+ }
},
{
"name": "SF (Amygdala)",
- "status": "right hemisphere",
"labelIndex": 110,
- "rgb": [
- 200,
- 200,
- 200
- ],
- "ngId": "ICBM152_V24_RIGHT_NG",
- "originDatasets": [
- {
- "filename": "SF (Amygdala) [v6.4, ICBM 2009c Asymmetric, right hemisphere]",
- "kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "37a6a7d9-5252-4605-a792-6fefe2fde816"
- }
- ],
- "fullId": {
- "kg": {
- "kgSchema": "minds/core/parcellationregion/v1.0.0",
- "kgId": "48929163-bf7b-4471-9f14-991c5225eced"
- }
- },
+ "ngId": "ICBM152_V25_RIGHT_NG",
"_": {
"xml": {
"name": "SF (Amygdala)",
- "id": "185",
- "grayvalue": "110"
- },
- "dat": {
- "colors": false,
- "names": false
+ "gray": "110"
}
- },
- "position": [
- 17641892,
- -1079955,
- -20360360
- ]
+ }
}
],
"_": {
- "jubrain-ontology_24.json": {
+ "julichbrain-ontology_25.json": {
"name": "SF (Amygdala)",
"arealabel": "SF",
"status": "publicP",
"labelIndex": "185",
"doi": "https://doi.org/10.25493/WD31-SEA",
"synonyms": [],
- "rgb": null,
- "kgHref": "https://kg.ebrains.eu/search/instances/Dataset/37a6a7d9-5252-4605-a792-6fefe2fde816"
- },
- "kgRegion": {
- "alternateOf": [],
- "species": [],
- "name": "SF (Amygdala)",
- "alias": null,
- "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationregion/v1.0.0/48929163-bf7b-4471-9f14-991c5225eced"
+ "rgb": null
}
}
}
],
"_": {
- "jubrain-ontology_24.json": {
+ "julichbrain-ontology_25.json": {
"name": "superficial group",
"status": null,
"labelIndex": null,
@@ -687,326 +364,124 @@
},
{
"name": "fiber masses",
- "status": null,
"children": [
{
"name": "VTM (Amygdala)",
- "status": "publicP",
"children": [
{
"name": "VTM (Amygdala)",
- "status": "left hemisphere",
- "labelIndex": 81,
- "rgb": [
- 200,
- 200,
- 200
- ],
- "ngId": "ICBM152_V24_LEFT_NG",
- "originDatasets": [
- {
- "filename": "VTM (Amygdala) [v6.4, ICBM 2009c Asymmetric, left hemisphere]",
- "kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "9428d48e-f222-4191-96b8-02d3fa6068da"
- }
- ],
- "fullId": {
- "kg": {
- "kgSchema": "minds/core/parcellationregion/v1.0.0",
- "kgId": "a964e6e6-8014-41a2-b975-754d75cbb6f2"
- }
- },
+ "labelIndex": 83,
+ "ngId": "ICBM152_V25_LEFT_NG",
"_": {
"xml": {
"name": "VTM (Amygdala)",
- "id": "228",
- "grayvalue": "81"
- },
- "dat": {
- "colors": false,
- "names": false
+ "gray": "83"
}
- },
- "position": [
- -24721774,
- -11375000,
- -15447581
- ]
+ }
},
{
"name": "VTM (Amygdala)",
- "status": "right hemisphere",
- "labelIndex": 81,
- "rgb": [
- 200,
- 200,
- 200
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- "ngId": "ICBM152_V24_LEFT_NG",
- "originDatasets": [
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- "kgId": "e8abfe3d-8b64-45c2-8853-314d82873273"
- }
- },
+ "ngId": "ICBM152_V25_LEFT_NG",
"_": {
"xml": {
"name": "Fastigial Nucleus (Cerebellum)",
- "id": "219",
- "grayvalue": "102"
- },
- "dat": {
- "colors": false,
- "names": false
+ "gray": "102"
}
- },
- "position": [
- -3670061,
- -54148676,
- -30472505
- ]
+ }
},
{
"name": "Fastigial Nucleus (Cerebellum)",
- "status": "right hemisphere",
"labelIndex": 102,
- "rgb": [
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- 200,
- 200
- ],
- "ngId": "ICBM152_V24_RIGHT_NG",
- "originDatasets": [
- {
- "filename": "Fastigial Nucleus (Cerebellum) [v6.2, ICBM 2009c Asymmetric, right hemisphere]",
- "kgSchema": "minds/core/dataset/v1.0.0",
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- }
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- "fullId": {
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- "kgId": "e8abfe3d-8b64-45c2-8853-314d82873273"
- }
- },
+ "ngId": "ICBM152_V25_RIGHT_NG",
"_": {
"xml": {
"name": "Fastigial Nucleus (Cerebellum)",
- "id": "219",
- "grayvalue": "102"
- },
- "dat": {
- "colors": false,
- "names": false
+ "gray": "102"
}
- },
- "position": [
- 1301824,
- -54620232,
- -30245439
- ]
+ }
}
],
"_": {
- "jubrain-ontology_24.json": {
+ "julichbrain-ontology_25.json": {
"name": "Fastigial Nucleus (Cerebellum)",
"arealabel": "Fastigial-Nucleus",
"status": "publicP",
"labelIndex": "219",
"doi": "https://doi.org/10.25493/3YJ9-S6G",
"synonyms": [],
- "rgb": null,
- "kgHref": "https://kg.ebrains.eu/search/instances/Dataset/dec5c207-c0d9-4f25-a333-1db039c570cb"
- },
- "kgRegion": {
- "alternateOf": [],
- "species": [],
- "name": "Fastigial Nucleus (Cerebellum)",
- "alias": null,
- "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationregion/v1.0.0/e8abfe3d-8b64-45c2-8853-314d82873273"
+ "rgb": null
}
}
}
],
"_": {
- "jubrain-ontology_24.json": {
+ "julichbrain-ontology_25.json": {
"name": "fastigial nucleus",
"status": null,
"labelIndex": null,
@@ -13427,28 +5596,48 @@
},
{
"name": "emboliform nucleus",
- "status": null,
"children": [
{
"name": "Interposed Nucleus (Cerebellum)",
- "status": "publicP",
- "children": [],
+ "children": [
+ {
+ "name": "Interposed Nucleus (Cerebellum)",
+ "labelIndex": 109,
+ "ngId": "ICBM152_V25_LEFT_NG",
+ "_": {
+ "xml": {
+ "name": "Interposed Nucleus (Cerebellum)",
+ "gray": "109"
+ }
+ }
+ },
+ {
+ "name": "Interposed Nucleus (Cerebellum)",
+ "labelIndex": 109,
+ "ngId": "ICBM152_V25_RIGHT_NG",
+ "_": {
+ "xml": {
+ "name": "Interposed Nucleus (Cerebellum)",
+ "gray": "109"
+ }
+ }
+ }
+ ],
"_": {
- "jubrain-ontology_24.json": {
+ "julichbrain-ontology_25.json": {
"name": "Interposed Nucleus (Cerebellum)",
"arealabel": "Interposed-Nucleus",
"status": "publicP",
"labelIndex": "251",
"doi": "https://doi.org/10.25493/8PTB-JDH",
"synonyms": [],
- "rgb": null,
- "kgHref": "https://kg.ebrains.eu/search/instances/Dataset/658a7f71-1b94-4f4a-8f15-726043bbb52a"
+ "rgb": null
}
}
}
],
"_": {
- "jubrain-ontology_24.json": {
+ "julichbrain-ontology_25.json": {
"name": "emboliform nucleus",
"status": null,
"labelIndex": null,
@@ -13459,7 +5648,7 @@
}
],
"_": {
- "jubrain-ontology_24.json": {
+ "julichbrain-ontology_25.json": {
"name": "cerebellar nuclei",
"status": null,
"labelIndex": null,
@@ -13470,7 +5659,7 @@
}
],
"_": {
- "jubrain-ontology_24.json": {
+ "julichbrain-ontology_25.json": {
"name": "cerebellum",
"status": null,
"labelIndex": null,
@@ -13481,7 +5670,7 @@
}
],
"_": {
- "jubrain-ontology_24.json": {
+ "julichbrain-ontology_25.json": {
"name": "metencephalon",
"status": null,
"labelIndex": null,
@@ -13489,355 +5678,10 @@
"rgb": null
}
}
- },
- {
- "name": "_",
- "children": [
- {
- "name": "GapMap Frontal-I (GapMap)",
- "status": "left hemisphere",
- "labelIndex": 13,
- "ngId": "ICBM152_V24_LEFT_NG",
- "rgb": [
- 186,
- 255,
- 25
- ],
- "originDatasets": [
- {
- "filename": "GapMap Frontal-I (GapMap) [v9.2, ICBM 2009c Asymmetric, left hemisphere]",
- "kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "6b1ebd25-d1bf-477a-9f6f-d458b24bc6b7"
- }
- ],
- "_": {
- "xml": {
- "name": "GapMap Frontal-I (GapMap)",
- "id": "500",
- "grayvalue": "13"
- },
- "dat": {
- "colors": "500 186 255 25",
- "names": "500 GapMap-Frontal-I"
- }
- },
- "position": [
- -25239304,
- 40000455,
- 31765612
- ]
- },
- {
- "name": "GapMap Frontal-to-Occipital (GapMap)",
- "status": "left hemisphere",
- "labelIndex": 31,
- "ngId": "ICBM152_V24_LEFT_NG",
- "rgb": [
- 104,
- 161,
- 93
- ],
- "originDatasets": [
- {
- "filename": "GapMap Frontal-to-Occipital (GapMap) [v9.2, ICBM 2009c Asymmetric, left hemisphere]",
- "kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "f3ae17b7-f994-4161-ba60-46a971610167"
- }
- ],
- "_": {
- "xml": {
- "name": "GapMap Frontal-to-Occipital (GapMap)",
- "id": "504",
- "grayvalue": "31"
- },
- "dat": {
- "colors": "504 104 161 93",
- "names": "504 GapMap-Frontal-to-Occipital"
- }
- },
- "position": [
- -8964794,
- -28310868,
- 31724659
- ]
- },
- {
- "name": "GapMap Temporal-to-Parietal (GapMap)",
- "status": "left hemisphere",
- "labelIndex": 60,
- "ngId": "ICBM152_V24_LEFT_NG",
- "rgb": [
- 76,
- 90,
- 161
- ],
- "originDatasets": [
- {
- "filename": "GapMap Temporal-to-Parietal (GapMap) [v9.2, ICBM 2009c Asymmetric, left hemisphere]",
- "kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "19838359-3e95-4334-aaa0-3c64e3a65c18"
- }
- ],
- "_": {
- "xml": {
- "name": "GapMap Temporal-to-Parietal (GapMap)",
- "id": "503",
- "grayvalue": "60"
- },
- "dat": {
- "colors": "503 76 90 161",
- "names": "503 GapMap-Temporal-to-Parietal"
- }
- },
- "position": [
- -47399575,
- -27264559,
- -14834628
- ]
- },
- {
- "name": "GapMap Frontal-II (GapMap)",
- "status": "left hemisphere",
- "labelIndex": 90,
- "ngId": "ICBM152_V24_LEFT_NG",
- "rgb": [
- 255,
- 135,
- 15
- ],
- "originDatasets": [
- {
- "filename": "GapMap Frontal-II (GapMap) [v9.2, ICBM 2009c Asymmetric, left hemisphere]",
- "kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "1db74846-624c-4be3-b4cc-71c18e94b119"
- }
- ],
- "_": {
- "xml": {
- "name": "GapMap Frontal-II (GapMap)",
- "id": "501",
- "grayvalue": "90"
- },
- "dat": {
- "colors": "501 255 135 15",
- "names": "501 GapMap-Frontal-II"
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- },
- {
- "name": "GapMap Frontal-to-Temporal (GapMap)",
- "status": "left hemisphere",
- "labelIndex": 96,
- "ngId": "ICBM152_V24_LEFT_NG",
- "rgb": [
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- ],
- "originDatasets": [
- {
- "filename": "GapMap Frontal-to-Temporal (GapMap) [v9.2, ICBM 2009c Asymmetric, left hemisphere]",
- "kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "6e0c6897-7ecf-451e-a9ad-d3e96bcc7b45"
- }
- ],
- "_": {
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- "name": "GapMap Frontal-to-Temporal (GapMap)",
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- "grayvalue": "96"
- },
- "dat": {
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- "names": "502 GapMap-Frontal-to-Temporal"
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- ]
- },
- {
- "name": "GapMap Frontal-I (GapMap)",
- "status": "right hemisphere",
- "labelIndex": 13,
- "ngId": "ICBM152_V24_RIGHT_NG",
- "rgb": [
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- 255,
- 25
- ],
- "originDatasets": [
- {
- "filename": "GapMap Frontal-I (GapMap) [v9.2, ICBM 2009c Asymmetric, right hemisphere]",
- "kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "6b1ebd25-d1bf-477a-9f6f-d458b24bc6b7"
- }
- ],
- "_": {
- "xml": {
- "name": "GapMap Frontal-I (GapMap)",
- "id": "500",
- "grayvalue": "13"
- },
- "dat": {
- "colors": "500 186 255 25",
- "names": "500 GapMap-Frontal-I"
- }
- },
- "position": [
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- 31722111
- ]
- },
- {
- "name": "GapMap Frontal-to-Occipital (GapMap)",
- "status": "right hemisphere",
- "labelIndex": 32,
- "ngId": "ICBM152_V24_RIGHT_NG",
- "rgb": [
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- 161,
- 93
- ],
- "originDatasets": [
- {
- "filename": "GapMap Frontal-to-Occipital (GapMap) [v9.2, ICBM 2009c Asymmetric, right hemisphere]",
- "kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "f3ae17b7-f994-4161-ba60-46a971610167"
- }
- ],
- "_": {
- "xml": {
- "name": "GapMap Frontal-to-Occipital (GapMap)",
- "id": "504",
- "grayvalue": "32"
- },
- "dat": {
- "colors": "504 104 161 93",
- "names": "504 GapMap-Frontal-to-Occipital"
- }
- },
- "position": [
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- -29794008,
- 31213424
- ]
- },
- {
- "name": "GapMap Temporal-to-Parietal (GapMap)",
- "status": "right hemisphere",
- "labelIndex": 60,
- "ngId": "ICBM152_V24_RIGHT_NG",
- "rgb": [
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- 90,
- 161
- ],
- "originDatasets": [
- {
- "filename": "GapMap Temporal-to-Parietal (GapMap) [v9.2, ICBM 2009c Asymmetric, right hemisphere]",
- "kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "19838359-3e95-4334-aaa0-3c64e3a65c18"
- }
- ],
- "_": {
- "xml": {
- "name": "GapMap Temporal-to-Parietal (GapMap)",
- "id": "503",
- "grayvalue": "60"
- },
- "dat": {
- "colors": "503 76 90 161",
- "names": "503 GapMap-Temporal-to-Parietal"
- }
- },
- "position": [
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- ]
- },
- {
- "name": "GapMap Frontal-II (GapMap)",
- "status": "right hemisphere",
- "labelIndex": 90,
- "ngId": "ICBM152_V24_RIGHT_NG",
- "rgb": [
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- 135,
- 15
- ],
- "originDatasets": [
- {
- "filename": "GapMap Frontal-II (GapMap) [v9.2, ICBM 2009c Asymmetric, right hemisphere]",
- "kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "1db74846-624c-4be3-b4cc-71c18e94b119"
- }
- ],
- "_": {
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- "grayvalue": "90"
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- "dat": {
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- "names": "501 GapMap-Frontal-II"
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- },
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- "ngId": "ICBM152_V24_RIGHT_NG",
- "rgb": [
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- "originDatasets": [
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- "kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "6e0c6897-7ecf-451e-a9ad-d3e96bcc7b45"
- }
- ],
- "_": {
- "xml": {
- "name": "GapMap Frontal-to-Temporal (GapMap)",
- "id": "502",
- "grayvalue": "96"
- },
- "dat": {
- "colors": "502 161 24 74",
- "names": "502 GapMap-Frontal-to-Temporal"
- }
- },
- "position": [
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- 11592258,
- -11466198
- ]
- }
- ]
}
],
"_": {
- "@src": "https://gin.g-node.org/FZJ-INM1-BDA/20201002_JulichBrain-V2_4-ICBM152_ontology/src/fdfca63e85a1fbea4df916cb604b8b1bc2ab0a28/output/nehuba-ui/julich-brain-v2_4-icbm152.json"
+ "@src": "https://gin.g-node.org/FZJ-INM1-BDA/20201202_JulichBrainHierarchy/src/07a76da90bdbd35e56a01de817befbe6c12f91da/output/nehubaUI/icbm_regions.json"
}
},{
"@id": "juelich/iav/atlas/v1.0.0/79cbeaa4ee96d5d3dfe2876e9f74b3dc3d3ffb84304fb9b965b1776563a1069c",
diff --git a/src/res/ext/MNI152NehubaConfig.json b/src/res/ext/MNI152NehubaConfig.json
index e85f80081..72ba49b6a 100644
--- a/src/res/ext/MNI152NehubaConfig.json
+++ b/src/res/ext/MNI152NehubaConfig.json
@@ -217,10 +217,10 @@
]
]
},
- "ICBM152_V24_LEFT_NG": {
+ "ICBM152_V25_LEFT_NG": {
"type": "segmentation",
"visible": true,
- "source": "precomputed://https://neuroglancer.humanbrainproject.eu/precomputed/data-repo/20201002_JulichBrain-V2_4-ICBM152_MPM_mesh/precomputed/left",
+ "source": "precomputed://https://neuroglancer.humanbrainproject.eu/precomputed/data-repo/20201202_JulichBrainV2_5_colin_MPM/precomputed/JulichBrain_MPMAtlas_l_N10_nlin2Stdicbm152asym2009c_publicDOI_3f5ec6016bc2242769c41befdbc1b2e0",
"transform": [
[
1,
@@ -246,15 +246,12 @@
0,
1
]
- ],
- "_":{
- "@src": "https://gin.g-node.org/FZJ-INM1-BDA/20201002_JulichBrain-V2_4-ICBM152_MPM_mesh/src/a282b9077713c0a0fe8abd1cf695bd3490cf9fbb/output/nehuba-ui/left_config.json"
- }
+ ]
},
- "ICBM152_V24_RIGHT_NG": {
+ "ICBM152_V25_RIGHT_NG": {
"type": "segmentation",
"visible": true,
- "source": "precomputed://https://neuroglancer.humanbrainproject.eu/precomputed/data-repo/20201002_JulichBrain-V2_4-ICBM152_MPM_mesh/precomputed/right",
+ "source": "precomputed://https://neuroglancer.humanbrainproject.eu/precomputed/data-repo/20201202_JulichBrainV2_5_colin_MPM/precomputed/JulichBrain_MPMAtlas_r_N10_nlin2Stdicbm152asym2009c_publicDOI_453c4c95827e38dcce5372b200065cba",
"transform": [
[
1,
@@ -280,10 +277,7 @@
0,
1
]
- ],
- "_": {
- "@src": "https://gin.g-node.org/FZJ-INM1-BDA/20201002_JulichBrain-V2_4-ICBM152_MPM_mesh/src/a282b9077713c0a0fe8abd1cf695bd3490cf9fbb/output/nehuba-ui/right_config.json"
- }
+ ]
},
"fibre bundle long": {
"type": "segmentation",
diff --git a/src/res/ext/atlas/atlas_multiLevelHuman.json b/src/res/ext/atlas/atlas_multiLevelHuman.json
index 9f2c68033..c6ed78af6 100644
--- a/src/res/ext/atlas/atlas_multiLevelHuman.json
+++ b/src/res/ext/atlas/atlas_multiLevelHuman.json
@@ -114,7 +114,7 @@
},
{
"@id": "juelich/iav/atlas/v1.0.0/7",
- "name": "Cytoarchitectonic maps - v2.4",
+ "name": "Cytoarchitectonic maps - v2.5",
"baseLayer": true,
"@version": {
"@next": null,
@@ -136,7 +136,7 @@
"@version": {
"@next": null,
"@this": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579",
- "name": "v2.4",
+ "name": "v2.5",
"@previous": "juelich/iav/atlas/v1.0.0/8"
},
"availableIn": [
diff --git a/src/res/ext/bigbrain.json b/src/res/ext/bigbrain.json
index 329984d5f..daf154e2e 100644
--- a/src/res/ext/bigbrain.json
+++ b/src/res/ext/bigbrain.json
@@ -17,7 +17,7 @@
{
"@id": "juelich/iav/atlas/v1.0.0/7",
"fullId": "juelich/iav/atlas/v1.0.0/7",
- "name": "Cytoarchitectonic Maps - v2.4",
+ "name": "Cytoarchitectonic Maps - v2.5",
"displayName": "Cytoarchitectonic Maps",
"properties": {
"name": "Cytoarchitectonic Maps",
diff --git a/src/res/ext/colin.json b/src/res/ext/colin.json
index 4fab4579d..31e47f467 100644
--- a/src/res/ext/colin.json
+++ b/src/res/ext/colin.json
@@ -11,7 +11,7 @@
{
"fullId": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579",
"@id": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579",
- "name": "Cytoarchitectonic Maps - v2.4",
+ "name": "Cytoarchitectonic Maps - v2.5",
"auxillaryMeshIndices": [
65535
],
@@ -42,128 +42,57 @@
"regions": [
{
"name": "telencephalon",
- "status": null,
"children": [
{
"name": "cerebral nuclei",
- "status": null,
"children": [
{
"name": "basal forebrain",
- "status": null,
"children": [
{
"name": "magnocellular group within septum",
- "status": null,
"children": [
{
"name": "Ch 123 (Basal Forebrain)",
- "status": "publicP",
"children": [
{
"name": "Ch 123 (Basal Forebrain)",
- "status": "left hemisphere",
- "labelIndex": 76,
- "rgb": [
- 200,
- 200,
- 200
- ],
- "ngId": "COLIN_V24_LEFT_NG",
- "originDatasets": [
- {
- "filename": "Ch 123 (Basal Forebrain) [v4.2, Colin 27, left hemisphere]",
- "kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "147aaab9-d5f2-48db-80f3-95adc9e7e8a6"
- }
- ],
- "fullId": {
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- "kgId": "bb111a95-e04c-4987-8254-4af4ed8b0022"
- }
- },
+ "labelIndex": 79,
+ "ngId": "COLIN_V25_LEFT_NG",
"_": {
"xml": {
"name": "Ch 123 (Basal Forebrain)",
- "id": "286",
- "grayvalue": "76"
- },
- "dat": {
- "colors": false,
- "names": false
- }
- },
- "position": [
- -2323651,
- 4172199,
- -8130705
- ]
+ "gray": "79"
+ }
+ }
},
{
"name": "Ch 123 (Basal Forebrain)",
- "status": "right hemisphere",
- "labelIndex": 76,
- "rgb": [
- 200,
- 200,
- 200
- ],
- "ngId": "COLIN_V24_RIGHT_NG",
- "originDatasets": [
- {
- "filename": "Ch 123 (Basal Forebrain) [v4.2, Colin 27, right hemisphere]",
- "kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "147aaab9-d5f2-48db-80f3-95adc9e7e8a6"
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},
{
"name": "emboliform nucleus",
- "status": null,
"children": [
{
"name": "Interposed Nucleus (Cerebellum)",
- "status": "publicP",
- "children": [],
+ "children": [
+ {
+ "name": "Interposed Nucleus (Cerebellum)",
+ "labelIndex": 109,
+ "ngId": "COLIN_V25_LEFT_NG",
+ "_": {
+ "xml": {
+ "name": "Interposed Nucleus (Cerebellum)",
+ "gray": "109"
+ }
+ }
+ },
+ {
+ "name": "Interposed Nucleus (Cerebellum)",
+ "labelIndex": 109,
+ "ngId": "COLIN_V25_RIGHT_NG",
+ "_": {
+ "xml": {
+ "name": "Interposed Nucleus (Cerebellum)",
+ "gray": "109"
+ }
+ }
+ }
+ ],
"_": {
- "jubrain-ontology_24.json": {
+ "julichbrain-ontology_25.json": {
"name": "Interposed Nucleus (Cerebellum)",
"arealabel": "Interposed-Nucleus",
"status": "publicP",
"labelIndex": "251",
"doi": "https://doi.org/10.25493/8PTB-JDH",
"synonyms": [],
- "rgb": null,
- "kgHref": "https://kg.ebrains.eu/search/instances/Dataset/658a7f71-1b94-4f4a-8f15-726043bbb52a"
+ "rgb": null
}
}
}
],
"_": {
- "jubrain-ontology_24.json": {
+ "julichbrain-ontology_25.json": {
"name": "emboliform nucleus",
"status": null,
"labelIndex": null,
@@ -13458,7 +5647,7 @@
}
],
"_": {
- "jubrain-ontology_24.json": {
+ "julichbrain-ontology_25.json": {
"name": "cerebellar nuclei",
"status": null,
"labelIndex": null,
@@ -13469,7 +5658,7 @@
}
],
"_": {
- "jubrain-ontology_24.json": {
+ "julichbrain-ontology_25.json": {
"name": "cerebellum",
"status": null,
"labelIndex": null,
@@ -13480,7 +5669,7 @@
}
],
"_": {
- "jubrain-ontology_24.json": {
+ "julichbrain-ontology_25.json": {
"name": "metencephalon",
"status": null,
"labelIndex": null,
@@ -13488,355 +5677,10 @@
"rgb": null
}
}
- },
- {
- "name": "_",
- "children": [
- {
- "name": "GapMap Frontal-I (GapMap)",
- "status": "left hemisphere",
- "labelIndex": 13,
- "ngId": "COLIN_V24_LEFT_NG",
- "rgb": [
- 186,
- 255,
- 25
- ],
- "originDatasets": [
- {
- "filename": "GapMap Frontal-I (GapMap) [v9.2, Colin 27, left hemisphere]",
- "kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "6b1ebd25-d1bf-477a-9f6f-d458b24bc6b7"
- }
- ],
- "_": {
- "xml": {
- "name": "GapMap Frontal-I (GapMap)",
- "id": "500",
- "grayvalue": "13"
- },
- "dat": {
- "colors": "500 186 255 25",
- "names": "500 GapMap-Frontal-I"
- }
- },
- "position": [
- -25331861,
- 37452091,
- 30838842
- ]
- },
- {
- "name": "GapMap Frontal-to-Occipital (GapMap)",
- "status": "left hemisphere",
- "labelIndex": 32,
- "ngId": "COLIN_V24_LEFT_NG",
- "rgb": [
- 104,
- 161,
- 93
- ],
- "originDatasets": [
- {
- "filename": "GapMap Frontal-to-Occipital (GapMap) [v9.2, Colin 27, left hemisphere]",
- "kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "f3ae17b7-f994-4161-ba60-46a971610167"
- }
- ],
- "_": {
- "xml": {
- "name": "GapMap Frontal-to-Occipital (GapMap)",
- "id": "504",
- "grayvalue": "32"
- },
- "dat": {
- "colors": "504 104 161 93",
- "names": "504 GapMap-Frontal-to-Occipital"
- }
- },
- "position": [
- -7346392,
- -28817952,
- 33206834
- ]
- },
- {
- "name": "GapMap Temporal-to-Parietal (GapMap)",
- "status": "left hemisphere",
- "labelIndex": 60,
- "ngId": "COLIN_V24_LEFT_NG",
- "rgb": [
- 76,
- 90,
- 161
- ],
- "originDatasets": [
- {
- "filename": "GapMap Temporal-to-Parietal (GapMap) [v9.2, Colin 27, left hemisphere]",
- "kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "19838359-3e95-4334-aaa0-3c64e3a65c18"
- }
- ],
- "_": {
- "xml": {
- "name": "GapMap Temporal-to-Parietal (GapMap)",
- "id": "503",
- "grayvalue": "60"
- },
- "dat": {
- "colors": "503 76 90 161",
- "names": "503 GapMap-Temporal-to-Parietal"
- }
- },
- "position": [
- -47773029,
- -27983810,
- -15778156
- ]
- },
- {
- "name": "GapMap Frontal-II (GapMap)",
- "status": "left hemisphere",
- "labelIndex": 90,
- "ngId": "COLIN_V24_LEFT_NG",
- "rgb": [
- 255,
- 135,
- 15
- ],
- "originDatasets": [
- {
- "filename": "GapMap Frontal-II (GapMap) [v9.2, Colin 27, left hemisphere]",
- "kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "1db74846-624c-4be3-b4cc-71c18e94b119"
- }
- ],
- "_": {
- "xml": {
- "name": "GapMap Frontal-II (GapMap)",
- "id": "501",
- "grayvalue": "90"
- },
- "dat": {
- "colors": "501 255 135 15",
- "names": "501 GapMap-Frontal-II"
- }
- },
- "position": [
- -44572200,
- 672896,
- 41773544
- ]
- },
- {
- "name": "GapMap Frontal-to-Temporal (GapMap)",
- "status": "left hemisphere",
- "labelIndex": 97,
- "ngId": "COLIN_V24_LEFT_NG",
- "rgb": [
- 161,
- 24,
- 74
- ],
- "originDatasets": [
- {
- "filename": "GapMap Frontal-to-Temporal (GapMap) [v9.2, Colin 27, left hemisphere]",
- "kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "6e0c6897-7ecf-451e-a9ad-d3e96bcc7b45"
- }
- ],
- "_": {
- "xml": {
- "name": "GapMap Frontal-to-Temporal (GapMap)",
- "id": "502",
- "grayvalue": "97"
- },
- "dat": {
- "colors": "502 161 24 74",
- "names": "502 GapMap-Frontal-to-Temporal"
- }
- },
- "position": [
- -32424452,
- 6375723,
- -11120362
- ]
- },
- {
- "name": "GapMap Frontal-I (GapMap)",
- "status": "right hemisphere",
- "labelIndex": 13,
- "ngId": "COLIN_V24_RIGHT_NG",
- "rgb": [
- 186,
- 255,
- 25
- ],
- "originDatasets": [
- {
- "filename": "GapMap Frontal-I (GapMap) [v9.2, Colin 27, right hemisphere]",
- "kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "6b1ebd25-d1bf-477a-9f6f-d458b24bc6b7"
- }
- ],
- "_": {
- "xml": {
- "name": "GapMap Frontal-I (GapMap)",
- "id": "500",
- "grayvalue": "13"
- },
- "dat": {
- "colors": "500 186 255 25",
- "names": "500 GapMap-Frontal-I"
- }
- },
- "position": [
- 26213732,
- 37040742,
- 29833033
- ]
- },
- {
- "name": "GapMap Frontal-to-Occipital (GapMap)",
- "status": "right hemisphere",
- "labelIndex": 32,
- "ngId": "COLIN_V24_RIGHT_NG",
- "rgb": [
- 104,
- 161,
- 93
- ],
- "originDatasets": [
- {
- "filename": "GapMap Frontal-to-Occipital (GapMap) [v9.2, Colin 27, right hemisphere]",
- "kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "f3ae17b7-f994-4161-ba60-46a971610167"
- }
- ],
- "_": {
- "xml": {
- "name": "GapMap Frontal-to-Occipital (GapMap)",
- "id": "504",
- "grayvalue": "32"
- },
- "dat": {
- "colors": "504 104 161 93",
- "names": "504 GapMap-Frontal-to-Occipital"
- }
- },
- "position": [
- 7980800,
- -33549695,
- 33674206
- ]
- },
- {
- "name": "GapMap Temporal-to-Parietal (GapMap)",
- "status": "right hemisphere",
- "labelIndex": 60,
- "ngId": "COLIN_V24_RIGHT_NG",
- "rgb": [
- 76,
- 90,
- 161
- ],
- "originDatasets": [
- {
- "filename": "GapMap Temporal-to-Parietal (GapMap) [v9.2, Colin 27, right hemisphere]",
- "kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "19838359-3e95-4334-aaa0-3c64e3a65c18"
- }
- ],
- "_": {
- "xml": {
- "name": "GapMap Temporal-to-Parietal (GapMap)",
- "id": "503",
- "grayvalue": "60"
- },
- "dat": {
- "colors": "503 76 90 161",
- "names": "503 GapMap-Temporal-to-Parietal"
- }
- },
- "position": [
- 46061019,
- -26184223,
- -17208317
- ]
- },
- {
- "name": "GapMap Frontal-II (GapMap)",
- "status": "right hemisphere",
- "labelIndex": 90,
- "ngId": "COLIN_V24_RIGHT_NG",
- "rgb": [
- 255,
- 135,
- 15
- ],
- "originDatasets": [
- {
- "filename": "GapMap Frontal-II (GapMap) [v9.2, Colin 27, right hemisphere]",
- "kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "1db74846-624c-4be3-b4cc-71c18e94b119"
- }
- ],
- "_": {
- "xml": {
- "name": "GapMap Frontal-II (GapMap)",
- "id": "501",
- "grayvalue": "90"
- },
- "dat": {
- "colors": "501 255 135 15",
- "names": "501 GapMap-Frontal-II"
- }
- },
- "position": [
- 43447782,
- -1029369,
- 41004558
- ]
- },
- {
- "name": "GapMap Frontal-to-Temporal (GapMap)",
- "status": "right hemisphere",
- "labelIndex": 96,
- "ngId": "COLIN_V24_RIGHT_NG",
- "rgb": [
- 161,
- 24,
- 74
- ],
- "originDatasets": [
- {
- "filename": "GapMap Frontal-to-Temporal (GapMap) [v9.2, Colin 27, right hemisphere]",
- "kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "6e0c6897-7ecf-451e-a9ad-d3e96bcc7b45"
- }
- ],
- "_": {
- "xml": {
- "name": "GapMap Frontal-to-Temporal (GapMap)",
- "id": "502",
- "grayvalue": "96"
- },
- "dat": {
- "colors": "502 161 24 74",
- "names": "502 GapMap-Frontal-to-Temporal"
- }
- },
- "position": [
- 29424689,
- 5102791,
- -10713198
- ]
- }
- ]
}
],
"_": {
- "@src": "https://gin.g-node.org/FZJ-INM1-BDA/20200926_JulichBrain-V2_4-Colin_ontology/raw/98e8ea895162e2a79122f2068daf61d07dd0b794/output/nehuba-ui/julich-brain-v2_4-colin.json"
+ "@src": "https://gin.g-node.org/FZJ-INM1-BDA/20201202_JulichBrainHierarchy/src/07a76da90bdbd35e56a01de817befbe6c12f91da/output/nehubaUI/colin_regions.json"
}
},{
"fullId": "juelich/iav/atlas/v1.0.0/8",
diff --git a/src/res/ext/colinNehubaConfig.json b/src/res/ext/colinNehubaConfig.json
index 92a712d78..10e5efe04 100644
--- a/src/res/ext/colinNehubaConfig.json
+++ b/src/res/ext/colinNehubaConfig.json
@@ -87,10 +87,10 @@
]
]
},
- "COLIN_V24_LEFT_NG": {
+ "COLIN_V25_LEFT_NG": {
"type": "segmentation",
"visible": true,
- "source": "precomputed://https://neuroglancer.humanbrainproject.eu/precomputed/data-repo/20200926_JulichBrain-V2_4-Colin_MPM_mesh/precomputed/left",
+ "source": "precomputed://https://neuroglancer.humanbrainproject.eu/precomputed/data-repo/20201202_JulichBrainV2_5_colin_MPM/precomputed/JulichBrain_MPMAtlas_l_N10_nlin2Stdcolin27_publicDOI_37fdd19c7ce06ca709a34e21d8ec0886",
"transform": [
[
1,
@@ -121,10 +121,10 @@
"@src": "https://gin.g-node.org/FZJ-INM1-BDA/20200926_JulichBrain-V2_4-Colin_MPM_mesh/raw/745a37f64b6995a661f5a61287b4067df01687cb/output/nehuba-ui/left_config.json"
}
},
- "COLIN_V24_RIGHT_NG": {
+ "COLIN_V25_RIGHT_NG": {
"type": "segmentation",
"visible": true,
- "source": "precomputed://https://neuroglancer.humanbrainproject.eu/precomputed/data-repo/20200926_JulichBrain-V2_4-Colin_MPM_mesh/precomputed/right",
+ "source": "precomputed://https://neuroglancer.humanbrainproject.eu/precomputed/data-repo/20201202_JulichBrainV2_5_colin_MPM/precomputed/JulichBrain_MPMAtlas_r_N10_nlin2Stdcolin27_publicDOI_387941812ac0807aa1c7050b109ce623",
"transform": [
[
1,
diff --git a/src/services/effect/effect.spec.ts b/src/services/effect/effect.spec.ts
index 9d36abbe0..7d77f2e22 100644
--- a/src/services/effect/effect.spec.ts
+++ b/src/services/effect/effect.spec.ts
@@ -10,7 +10,7 @@ import { defaultRootState } from '../stateStore.service'
const colinsJson = require('!json-loader!../../res/ext/colin.json')
-const COLIN_JULICHBRAIN_LAYER_NAME = `COLIN_V24_LEFT_NG`
+const COLIN_JULICHBRAIN_LAYER_NAME = `COLIN_V25_LEFT_NG`
describe('effect.ts', () => {
describe('getGetRegionFromLabelIndexId', () => {
--
GitLab