From 24312034a0d19767498488ca9d8fdca9a99fd2fe Mon Sep 17 00:00:00 2001
From: Xiao Gui <xgui3783@gmail.com>
Date: Thu, 16 Jan 2020 10:33:09 +0100
Subject: [PATCH] chore: added allen mouse kgids
---
src/res/ext/allenMouse.json | 521 +++++++++++++++++++++++++++++++-----
1 file changed, 448 insertions(+), 73 deletions(-)
diff --git a/src/res/ext/allenMouse.json b/src/res/ext/allenMouse.json
index 13ebc3c9f..89d1a804a 100644
--- a/src/res/ext/allenMouse.json
+++ b/src/res/ext/allenMouse.json
@@ -3,7 +3,9 @@
"type": "template",
"species": "Mouse",
"ngId": "stpt",
- "otherNgIds": ["nissl"],
+ "otherNgIds": [
+ "nissl"
+ ],
"useTheme": "dark",
"nehubaConfigURL": "nehubaConfig/allenMouseNehubaConfig",
"parcellations": [
@@ -368,7 +370,14 @@
"labelIndex": 882,
"children": []
}
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "368c29b4-affd-46cf-ac89-ce6d520759b1"
+ }
+ },
+ "relatedAreas": []
},
{
"ngId": "v3_2017",
@@ -465,7 +474,14 @@
"labelIndex": 1085,
"children": []
}
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "af019af1-3b69-42ac-be17-f1c2a1058329"
+ }
+ },
+ "relatedAreas": []
}
]
},
@@ -742,7 +758,14 @@
"labelIndex": 929,
"children": []
}
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "6321aaf1-e663-48ac-a2e4-a0b53b2a4941"
+ }
+ },
+ "relatedAreas": []
},
{
"ngId": "v3_2017",
@@ -933,7 +956,14 @@
}
]
}
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "a2c0a613-0507-4878-a305-0b8455121e3a"
+ }
+ },
+ "relatedAreas": []
},
{
"ngId": "v3_2017",
@@ -1046,7 +1076,14 @@
"labelIndex": 510,
"children": []
}
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "2442b0a6-5a4b-433f-b24c-24973831f4f4"
+ }
+ },
+ "relatedAreas": []
},
{
"ngId": "v3_2017",
@@ -1272,7 +1309,14 @@
"labelIndex": 1026,
"children": []
}
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "0b260c14-c381-4260-a958-505bfd6672d1"
+ }
+ },
+ "relatedAreas": []
},
{
"ngId": "v3_2017",
@@ -1385,7 +1429,14 @@
"labelIndex": 461,
"children": []
}
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "4b9e5151-bf65-4d3c-9926-9f8e92061889"
+ }
+ },
+ "relatedAreas": []
},
{
"ngId": "v3_2017",
@@ -1498,9 +1549,23 @@
"labelIndex": 182305713,
"children": []
}
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "ac8f6062-6014-437d-b24a-715b211f2096"
+ }
+ },
+ "relatedAreas": []
}
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "6ffdfed4-d9bf-4c92-b6f7-e7de76dee881"
+ }
+ },
+ "relatedAreas": []
},
{
"ngId": "v3_2017",
@@ -2582,7 +2647,14 @@
"labelIndex": 649,
"children": []
}
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "6f17fd2c-94d7-4807-be28-12eb2b870e6d"
+ }
+ },
+ "relatedAreas": []
},
{
"ngId": "v3_2017",
@@ -2695,7 +2767,14 @@
"labelIndex": 441,
"children": []
}
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "f9925036-2394-48df-813e-150dce63aee4"
+ }
+ },
+ "relatedAreas": []
},
{
"ngId": "v3_2017",
@@ -2921,7 +3000,14 @@
"labelIndex": 305,
"children": []
}
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "f9d426ec-d6b2-4370-8fa2-8e85d30168c6"
+ }
+ },
+ "relatedAreas": []
},
{
"ngId": "v3_2017",
@@ -3542,7 +3628,14 @@
"labelIndex": 927,
"children": []
}
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "6f9e275f-e4b1-4b73-ab3c-61f3d386ed00"
+ }
+ },
+ "relatedAreas": []
},
{
"ngId": "v3_2017",
@@ -3749,7 +3842,14 @@
"labelIndex": 132,
"children": []
}
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "157f0525-03ae-434b-8856-bac7abb0a2a3"
+ }
+ },
+ "relatedAreas": []
},
{
"ngId": "v3_2017",
@@ -4896,7 +4996,14 @@
}
]
}
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "a43fe448-5035-4fb2-b141-3af62baf7c02"
+ }
+ },
+ "relatedAreas": []
},
{
"ngId": "v3_2017",
@@ -5009,7 +5116,14 @@
"labelIndex": 330,
"children": []
}
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "30517d4d-668e-40eb-a7a8-7112058ca906"
+ }
+ },
+ "relatedAreas": []
},
{
"ngId": "v3_2017",
@@ -5117,7 +5231,14 @@
"labelIndex": 622,
"children": []
}
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "fc465f87-b153-4418-a526-52874591f64a"
+ }
+ },
+ "relatedAreas": []
}
]
},
@@ -5313,7 +5434,14 @@
"labelIndex": 312782570,
"children": []
}
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "cf5c7194-fe25-4828-8225-8a8125c30133"
+ }
+ },
+ "relatedAreas": []
},
{
"ngId": "v3_2017",
@@ -5426,7 +5554,14 @@
"labelIndex": 312782624,
"children": []
}
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "d5ffb9fa-04e2-44dc-bcee-ab4a1467fa99"
+ }
+ },
+ "relatedAreas": []
}
]
},
@@ -6800,7 +6935,14 @@
"labelIndex": 415,
"children": []
}
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "9f951cd1-dc61-40b5-bc1d-473e04b95cbb"
+ }
+ },
+ "relatedAreas": []
},
{
"ngId": "v3_2017",
@@ -7180,7 +7322,14 @@
"labelIndex": 19,
"children": []
}
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "fc429031-1632-49a4-b9c6-00ab72100c85"
+ }
+ },
+ "relatedAreas": []
},
{
"ngId": "v3_2017",
@@ -8237,7 +8386,14 @@
}
]
}
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "b4747984-ae71-4de2-bf18-e5965a27b490"
+ }
+ },
+ "relatedAreas": []
},
{
"ngId": "v3_2017",
@@ -9213,7 +9369,14 @@
}
]
}
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "2f520589-1a89-427d-ac6b-3a561e0fa0f3"
+ }
+ },
+ "relatedAreas": []
},
{
"ngId": "v3_2017",
@@ -14853,7 +15016,14 @@
}
]
}
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "a470f51b-bf1f-4c63-a18f-df2ea2c65f3f"
+ }
+ },
+ "relatedAreas": []
},
{
"ngId": "v3_2017",
@@ -15507,7 +15677,14 @@
}
]
}
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "8b7490d6-bde7-438a-aee9-34820860fe12"
+ }
+ },
+ "relatedAreas": []
},
{
"ngId": "v3_2017",
@@ -15976,7 +16153,14 @@
}
]
}
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "caa2c52c-0d6c-4eba-b2b6-5414cc241553"
+ }
+ },
+ "relatedAreas": []
}
]
},
@@ -19106,9 +19290,11 @@
"properties": {
"name": "Allen Mouse Common Coordinate Framework v3 2017",
"description": "Allen Mouse Common Coordinate Framework v3, downloaded on 19/09/2019, 2017 (662 newly drawn structures, 1522 structures total)",
- "publications": [{
- "cite": "Allen Mouse Brain Connectivity Atlas [Internet]. Seattle (WA): Allen Institute for Brain Science. ©2011. Available from: http://connectivity.brain-map.org/."
- }]
+ "publications": [
+ {
+ "cite": "Allen Mouse Brain Connectivity Atlas [Internet]. Seattle (WA): Allen Institute for Brain Science. ©2011. Available from: http://connectivity.brain-map.org/."
+ }
+ ]
}
},
{
@@ -19851,7 +20037,14 @@
2337500,
1677500
]
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "368c29b4-affd-46cf-ac89-ce6d520759b1"
+ }
+ },
+ "relatedAreas": []
},
{
"name": "Secondary motor area",
@@ -20128,7 +20321,14 @@
3027500,
1927500
]
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "af019af1-3b69-42ac-be17-f1c2a1058329"
+ }
+ },
+ "relatedAreas": []
}
],
"ontologyMetadata": {
@@ -20771,7 +20971,14 @@
967500,
1577500
]
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "6321aaf1-e663-48ac-a2e4-a0b53b2a4941"
+ }
+ },
+ "relatedAreas": []
},
{
"name": "Primary somatosensory area, barrel field",
@@ -21249,7 +21456,14 @@
-102500,
2287500
]
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "a2c0a613-0507-4878-a305-0b8455121e3a"
+ }
+ },
+ "relatedAreas": []
},
{
"name": "Primary somatosensory area, lower limb",
@@ -21572,7 +21786,14 @@
667500,
2807500
]
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "2442b0a6-5a4b-433f-b24c-24973831f4f4"
+ }
+ },
+ "relatedAreas": []
},
{
"name": "Primary somatosensory area, mouth",
@@ -22218,7 +22439,14 @@
1187500,
2297500
]
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "0b260c14-c381-4260-a958-505bfd6672d1"
+ }
+ },
+ "relatedAreas": []
},
{
"name": "Primary somatosensory area, trunk",
@@ -22541,7 +22769,14 @@
-42500,
3097500
]
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "4b9e5151-bf65-4d3c-9926-9f8e92061889"
+ }
+ },
+ "relatedAreas": []
},
{
"name": "Primary somatosensory area, unassigned",
@@ -22864,7 +23099,14 @@
777500,
2317500
]
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "ac8f6062-6014-437d-b24a-715b211f2096"
+ }
+ },
+ "relatedAreas": []
}
],
"ontologyMetadata": {
@@ -22902,7 +23144,14 @@
897500,
1977500
]
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "6ffdfed4-d9bf-4c92-b6f7-e7de76dee881"
+ }
+ },
+ "relatedAreas": []
},
{
"name": "Supplemental somatosensory area",
@@ -25867,7 +26116,14 @@
-1622500,
2357500
]
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "6f17fd2c-94d7-4807-be28-12eb2b870e6d"
+ }
+ },
+ "relatedAreas": []
},
{
"name": "Anteromedial visual area",
@@ -26190,7 +26446,14 @@
-1022500,
3317500
]
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "f9925036-2394-48df-813e-150dce63aee4"
+ }
+ },
+ "relatedAreas": []
},
{
"name": "Lateral visual area",
@@ -26836,7 +27099,14 @@
-2432500,
2837500
]
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "f9d426ec-d6b2-4370-8fa2-8e85d30168c6"
+ }
+ },
+ "relatedAreas": []
},
{
"name": "Posterolateral visual area",
@@ -28562,7 +28832,14 @@
2197500,
2097500
]
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "6f9e275f-e4b1-4b73-ab3c-61f3d386ed00"
+ }
+ },
+ "relatedAreas": []
},
{
"name": "Anterior cingulate area, ventral part",
@@ -29176,7 +29453,14 @@
3527500,
1257500
]
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "157f0525-03ae-434b-8856-bac7abb0a2a3"
+ }
+ },
+ "relatedAreas": []
},
{
"name": "Infralimbic area",
@@ -32136,7 +32420,14 @@
-1492500,
3217500
]
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "a43fe448-5035-4fb2-b141-3af62baf7c02"
+ }
+ },
+ "relatedAreas": []
},
{
"name": "Retrosplenial area, dorsal part",
@@ -32459,7 +32750,14 @@
-1382500,
3237500
]
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "30517d4d-668e-40eb-a7a8-7112058ca906"
+ }
+ },
+ "relatedAreas": []
},
{
"name": "Retrosplenial area, ventral part",
@@ -32758,7 +33056,14 @@
-1152500,
2777500
]
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "fc465f87-b153-4418-a526-52874591f64a"
+ }
+ },
+ "relatedAreas": []
}
],
"ontologyMetadata": {
@@ -33260,7 +33565,14 @@
-612500,
3177500
]
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "cf5c7194-fe25-4828-8225-8a8125c30133"
+ }
+ },
+ "relatedAreas": []
},
{
"name": "Rostrolateral visual area",
@@ -33583,7 +33895,14 @@
-1162500,
2797500
]
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "d5ffb9fa-04e2-44dc-bcee-ab4a1467fa99"
+ }
+ },
+ "relatedAreas": []
}
],
"ontologyMetadata": {
@@ -36917,7 +37236,14 @@
-1342500,
1157500
]
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "9f951cd1-dc61-40b5-bc1d-473e04b95cbb"
+ }
+ },
+ "relatedAreas": []
},
{
"name": "Field CA2",
@@ -37851,7 +38177,14 @@
-1332500,
797500
]
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "fc429031-1632-49a4-b9c6-00ab72100c85"
+ }
+ },
+ "relatedAreas": []
},
{
"name": "Retrohippocampal region",
@@ -40539,7 +40872,14 @@
997500,
1107500
]
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "b4747984-ae71-4de2-bf18-e5965a27b490"
+ }
+ },
+ "relatedAreas": []
},
{
"name": "Cerebral nuclei",
@@ -43051,7 +43391,14 @@
867500,
297500
]
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "2f520589-1a89-427d-ac6b-3a561e0fa0f3"
+ }
+ },
+ "relatedAreas": []
},
{
"name": "Brain stem",
@@ -57486,7 +57833,14 @@
-2602500,
-722500
]
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "a470f51b-bf1f-4c63-a18f-df2ea2c65f3f"
+ }
+ },
+ "relatedAreas": []
},
{
"name": "Cerebellum",
@@ -58840,7 +59194,14 @@
-5122500,
1147500
]
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "8b7490d6-bde7-438a-aee9-34820860fe12"
+ }
+ },
+ "relatedAreas": []
},
{
"name": "Hemispheric regions",
@@ -60098,7 +60459,14 @@
-4942500,
777500
]
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "caa2c52c-0d6c-4eba-b2b6-5414cc241553"
+ }
+ },
+ "relatedAreas": []
}
],
"ontologyMetadata": {
@@ -67952,28 +68320,35 @@
}
],
"properties": {
- "name":"Allen Mouse Common Coordinate Framework v3 2015",
- "description":"Allen Mouse Common Coordinate Framework v3, downloaded on 01/07/2017 2015 (178 newly drawn structures, 1045 structures total)",
- "publications": [{
- "cite": "Allen Mouse Brain Connectivity Atlas [Internet]. Seattle (WA): Allen Institute for Brain Science. ©2011. Available from: http://connectivity.brain-map.org/."
- },{
- "doi": "10.1038/nature13186",
- "citation": "Oh, S.W. et al. (2014) A mesoscale connectome of the mouse brain, Nature 508: 207-214. "
- }]
+ "name": "Allen Mouse Common Coordinate Framework v3 2015",
+ "description": "Allen Mouse Common Coordinate Framework v3, downloaded on 01/07/2017 2015 (178 newly drawn structures, 1045 structures total)",
+ "publications": [
+ {
+ "cite": "Allen Mouse Brain Connectivity Atlas [Internet]. Seattle (WA): Allen Institute for Brain Science. ©2011. Available from: http://connectivity.brain-map.org/."
+ },
+ {
+ "doi": "10.1038/nature13186",
+ "citation": "Oh, S.W. et al. (2014) A mesoscale connectome of the mouse brain, Nature 508: 207-214. "
+ }
+ ]
}
}
],
"properties": {
"name": "Allen Mouse Common Coordinate Framework v3 2015",
"description": "The Allen Mouse Common Coordinate Framework v3 2015 includes a full-color, high-resolution anatomical reference atlas accompanied by a systematic, hierarchically organized taxonomy of mouse brain structures. Anatomical annotations in classical histological atlas plates were extracted to create a comprehensive volumetric reference atlas of the mouse brain.",
- "publications":[{
- "cite": "Allen Mouse Brain Connectivity Atlas [Internet]. Seattle (WA): Allen Institute for Brain Science. ©2011. Available from: http://connectivity.brain-map.org/."
- },{
- "cite":"Oh, S.W. et al. (2014) A mesoscale connectome of the mouse brain, Nature 508: 207-214.",
- "doi": "10.1038/nature13186"
- }, {
- "cite": "http://download.alleninstitute.org/informatics-archive/current-release/mouse_ccf/",
- "doi": "http://download.alleninstitute.org/informatics-archive/current-release/mouse_ccf/"
- }]
+ "publications": [
+ {
+ "cite": "Allen Mouse Brain Connectivity Atlas [Internet]. Seattle (WA): Allen Institute for Brain Science. ©2011. Available from: http://connectivity.brain-map.org/."
+ },
+ {
+ "cite": "Oh, S.W. et al. (2014) A mesoscale connectome of the mouse brain, Nature 508: 207-214.",
+ "doi": "10.1038/nature13186"
+ },
+ {
+ "cite": "http://download.alleninstitute.org/informatics-archive/current-release/mouse_ccf/",
+ "doi": "http://download.alleninstitute.org/informatics-archive/current-release/mouse_ccf/"
+ }
+ ]
}
}
\ No newline at end of file
--
GitLab