From 1ee1cd27f171b1fc325181e790c64bd8898177c7 Mon Sep 17 00:00:00 2001
From: xgui3783 <xgui3783@gmail.com>
Date: Wed, 12 Aug 2020 16:55:37 +0200
Subject: [PATCH] feat: added PM for gapmaps (#624)
* feat: added PM for gapmaps
* fix unit tests
---
deploy/datasets/testData/mni152JuBrain.js | 8 +-
src/glue.spec.ts | 3 +-
src/glue.ts | 12 +-
src/index.html | 2 +-
src/res/ext/MNI152.json | 3390 +++++++++++++----
src/res/ext/colin.json | 3390 +++++++++++++----
src/services/effect/effect.spec.ts | 32 +-
src/services/state/uiState.store.helper.ts | 1 +
.../previewCW.component.ts | 3 +
9 files changed, 5171 insertions(+), 1670 deletions(-)
diff --git a/deploy/datasets/testData/mni152JuBrain.js b/deploy/datasets/testData/mni152JuBrain.js
index 788d622c4..4cfe826de 100644
--- a/deploy/datasets/testData/mni152JuBrain.js
+++ b/deploy/datasets/testData/mni152JuBrain.js
@@ -185,9 +185,9 @@ module.exports = [
"parcellationRegion": [
{
"species": [],
- "name": "Area hOc1",
+ "name": "Area hOc1 (V1, 17, CalcS)",
"alias": null,
- "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationregion/v1.0.0/b851eb9d-9502-45e9-8dd8-2861f0e6da3f"
+ "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationregion/v1.0.0/5151ab8f-d8cb-4e67-a449-afe2a41fb007"
}
],
"species": [
@@ -297,9 +297,9 @@ module.exports = [
"parcellationRegion": [
{
"species": [],
- "name": "Area 44d",
+ "name": "Area 44 (IFG)",
"alias": null,
- "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationregion/v1.0.0/8aeae833-81c8-4e27-a8d6-deee339d6052"
+ "fullId": "https://nexus.humanbrainproject.org/v0/data/minds/core/parcellationregion/v1.0.0/8a6be82c-5947-4fff-8348-cf9bf73e4f40"
}
],
"species": [
diff --git a/src/glue.spec.ts b/src/glue.spec.ts
index f5ee1d2f4..f53f7a4fc 100644
--- a/src/glue.spec.ts
+++ b/src/glue.spec.ts
@@ -5,7 +5,6 @@ import { provideMockStore, MockStore } from "@ngrx/store/testing"
import { getRandomHex } from 'common/util'
import { EnumWidgetTypes, TypeOpenedWidget, uiActionSetPreviewingDatasetFiles } from "./services/state/uiState.store.helper"
import { hot } from "jasmine-marbles"
-import * as DATABROWSER_MODULE_EXPORTS from 'src/ui/databrowserModule'
import { HttpClientTestingModule, HttpTestingController } from "@angular/common/http/testing"
import { glueActionToggleDatasetPreview } from './glue'
import { getIdObj } from 'common/util'
@@ -244,7 +243,7 @@ describe('> glue.ts', () => {
// debounce at 100ms
tick(200)
- const req = ctrl.expectOne(`${DS_PREVIEW_URL}/${datasetId}/${encodeURIComponent(filename)}`)
+ const req = ctrl.expectOne(`${DS_PREVIEW_URL}/${encodeURIComponent('minds/core/dataset/v1.0.0')}/${datasetId}/${encodeURIComponent(filename)}`)
req.flush(nifti)
}))
})
diff --git a/src/glue.ts b/src/glue.ts
index bf94ffeb1..ca2ce2b87 100644
--- a/src/glue.ts
+++ b/src/glue.ts
@@ -145,20 +145,21 @@ export class DatasetPreviewGlue implements IDatasetPreviewGlue, OnDestroy{
}
private fetchedDatasetPreviewCache: Map<string, any> = new Map()
- private getDatasetPreviewFromId({ datasetId, filename }: IDatasetPreviewData){
+ private getDatasetPreviewFromId({ datasetId, filename, datasetSchema = 'minds/core/dataset/v1.0.0' }: IDatasetPreviewData){
const dsPrvId = DatasetPreviewGlue.GetDatasetPreviewId({ datasetId, filename })
- const cachedPrv = this.fetchedDatasetPreviewCache.get(dsPrvId)
+ const cachedPrv = this.fetchedDatasetPreviewCache.get(`${datasetSchema}/${dsPrvId}`)
const filteredDsId = /[a-f0-9-]+$/.exec(datasetId)
if (cachedPrv) return of(cachedPrv)
- return this.http.get(`${DS_PREVIEW_URL}/${filteredDsId}/${encodeURIComponent(filename)}`, { responseType: 'json' }).pipe(
+ return this.http.get(`${DS_PREVIEW_URL}/${encodeURIComponent(datasetSchema)}/${filteredDsId}/${encodeURIComponent(filename)}`, { responseType: 'json' }).pipe(
map(json => {
return {
...json,
filename,
- datasetId
+ datasetId,
+ datasetSchema
}
}),
- tap(val => this.fetchedDatasetPreviewCache.set(dsPrvId, val))
+ tap(val => this.fetchedDatasetPreviewCache.set(`${datasetSchema}/${dsPrvId}`, val))
)
}
@@ -313,6 +314,7 @@ export class DatasetPreviewGlue implements IDatasetPreviewGlue, OnDestroy{
}
private openDatasetPreviewWidget(data: IDatasetPreviewData) {
+ console.log({ data })
const { datasetId: kgId, filename } = data
if (!!this.actionOnWidget) {
diff --git a/src/index.html b/src/index.html
index db01a3a08..4c6e55195 100644
--- a/src/index.html
+++ b/src/index.html
@@ -11,7 +11,7 @@
<link rel="stylesheet" href="theme.css">
<link rel="stylesheet" href="version.css">
- <script src="https://unpkg.com/kg-dataset-previewer@0.0.19/dist/kg-dataset-previewer/kg-dataset-previewer.js" defer>
+ <script src="https://unpkg.com/kg-dataset-previewer@1.0.6/dist/kg-dataset-previewer/kg-dataset-previewer.js" defer>
</script>
<title>Interactive Atlas Viewer</title>
diff --git a/src/res/ext/MNI152.json b/src/res/ext/MNI152.json
index 6b4cfd568..01e740674 100644
--- a/src/res/ext/MNI152.json
+++ b/src/res/ext/MNI152.json
@@ -44,6 +44,12 @@
}
]
},
+ "_meta": {
+ "regions": {
+ "repo": "https://gin.g-node.org/xgui3783/20200811-julich-brain-v2-ontology.git",
+ "commit": "e10aaa86a002cdefe2e99172e73c416570c0c9d3"
+ }
+ },
"regions": [
{
"name": "telencephalon",
@@ -89,13 +95,20 @@
"labelIndex": 75,
"doi": "https://doi.org/10.25493/7SEP-P2V",
"synonyms": [],
+ "rgb": null,
"children": [],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "bb111a95-e04c-4987-8254-4af4ed8b0022"
+ }
+ },
"ngId": "julich brain mni152 v22 left",
"originDatasets": [
{
- "filename": "Ch 123 (Basal Forebrain) [v4.2, ICBM 2009c Asymmetric, left hemisphere]",
"kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "147aaab9-d5f2-48db-80f3-95adc9e7e8a6"
+ "kgId": "147aaab9-d5f2-48db-80f3-95adc9e7e8a6",
+ "filename": "Ch 123 (Basal Forebrain) [v4.2, ICBM 2009c Asymmetric, left hemisphere]"
}
],
"ontologyLabelIndex": 286
@@ -107,18 +120,31 @@
"labelIndex": 76,
"doi": "https://doi.org/10.25493/7SEP-P2V",
"synonyms": [],
+ "rgb": null,
"children": [],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "bb111a95-e04c-4987-8254-4af4ed8b0022"
+ }
+ },
"ngId": "julich brain mni152 v22 right",
"originDatasets": [
{
- "filename": "Ch 123 (Basal Forebrain) [v4.2, ICBM 2009c Asymmetric, right hemisphere]",
"kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "147aaab9-d5f2-48db-80f3-95adc9e7e8a6"
+ "kgId": "147aaab9-d5f2-48db-80f3-95adc9e7e8a6",
+ "filename": "Ch 123 (Basal Forebrain) [v4.2, ICBM 2009c Asymmetric, right hemisphere]"
}
],
"ontologyLabelIndex": 286
}
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "bb111a95-e04c-4987-8254-4af4ed8b0022"
+ }
+ }
}
]
},
@@ -145,13 +171,20 @@
"labelIndex": 12,
"doi": "https://doi.org/10.25493/VZJ5-8WJ",
"synonyms": [],
+ "rgb": null,
"children": [],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "a5c9d95f-8e7c-4454-91b6-a790387370fc"
+ }
+ },
"ngId": "julich brain mni152 v22 left",
"originDatasets": [
{
- "filename": "Ch 4 (Basal Forebrain) [v4.2, ICBM 2009c Asymmetric, left hemisphere]",
"kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "791a14c8-b899-414f-b237-27574a4cce7e"
+ "kgId": "791a14c8-b899-414f-b237-27574a4cce7e",
+ "filename": "Ch 4 (Basal Forebrain) [v4.2, ICBM 2009c Asymmetric, left hemisphere]"
}
],
"ontologyLabelIndex": 264
@@ -163,18 +196,31 @@
"labelIndex": 12,
"doi": "https://doi.org/10.25493/VZJ5-8WJ",
"synonyms": [],
+ "rgb": null,
"children": [],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "a5c9d95f-8e7c-4454-91b6-a790387370fc"
+ }
+ },
"ngId": "julich brain mni152 v22 right",
"originDatasets": [
{
- "filename": "Ch 4 (Basal Forebrain) [v4.2, ICBM 2009c Asymmetric, right hemisphere]",
"kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "791a14c8-b899-414f-b237-27574a4cce7e"
+ "kgId": "791a14c8-b899-414f-b237-27574a4cce7e",
+ "filename": "Ch 4 (Basal Forebrain) [v4.2, ICBM 2009c Asymmetric, right hemisphere]"
}
],
"ontologyLabelIndex": 264
}
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "a5c9d95f-8e7c-4454-91b6-a790387370fc"
+ }
+ }
}
]
},
@@ -198,36 +244,23 @@
"name": "Ch 123 (Basal Forebrain)",
"arealabel": "Ch-123",
"status": "left hemisphere",
- "labelIndex": null,
+ "labelIndex": "286",
"doi": "https://doi.org/10.25493/7SEP-P2V",
"synonyms": [],
"rgb": null,
- "children": [
- {
- "name": "Ch 123 (Basal Forebrain)",
- "arealabel": "Ch-123",
- "status": "left hemisphere",
- "labelIndex": 75,
- "doi": "https://doi.org/10.25493/7SEP-P2V",
- "synonyms": [],
- "children": [],
- "ngId": "julich brain mni152 v22 left",
- "originDatasets": [
- {
- "filename": "Ch 123 (Basal Forebrain) [v4.2, ICBM 2009c Asymmetric, left hemisphere]",
- "kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "147aaab9-d5f2-48db-80f3-95adc9e7e8a6"
- }
- ],
- "ontologyLabelIndex": 286
+ "children": [],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "bb111a95-e04c-4987-8254-4af4ed8b0022"
}
- ],
+ },
"ngId": "julich brain mni152 v22 left",
"originDatasets": [
{
- "filename": "Ch 123 (Basal Forebrain) [v4.2, ICBM 2009c Asymmetric, left hemisphere]",
"kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "147aaab9-d5f2-48db-80f3-95adc9e7e8a6"
+ "kgId": "147aaab9-d5f2-48db-80f3-95adc9e7e8a6",
+ "filename": "Ch 123 (Basal Forebrain) [v4.2, ICBM 2009c Asymmetric, left hemisphere]"
}
]
},
@@ -235,25 +268,32 @@
"name": "Ch 123 (Basal Forebrain)",
"arealabel": "Ch-123",
"status": "right hemisphere",
- "labelIndex": 76,
+ "labelIndex": "286",
"doi": "https://doi.org/10.25493/7SEP-P2V",
"synonyms": [],
+ "rgb": null,
"children": [],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "bb111a95-e04c-4987-8254-4af4ed8b0022"
+ }
+ },
"ngId": "julich brain mni152 v22 right",
"originDatasets": [
{
- "filename": "Ch 123 (Basal Forebrain) [v4.2, ICBM 2009c Asymmetric, right hemisphere]",
"kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "147aaab9-d5f2-48db-80f3-95adc9e7e8a6"
+ "kgId": "147aaab9-d5f2-48db-80f3-95adc9e7e8a6",
+ "filename": "Ch 123 (Basal Forebrain) [v4.2, ICBM 2009c Asymmetric, right hemisphere]"
}
- ],
- "ontologyLabelIndex": 286
+ ]
}
],
- "_notes": {
- "warnings": [
- "Not found in MPM"
- ]
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "bb111a95-e04c-4987-8254-4af4ed8b0022"
+ }
}
}
]
@@ -290,13 +330,20 @@
"labelIndex": 90,
"doi": "https://doi.org/10.25493/C3X0-NV3",
"synonyms": [],
+ "rgb": null,
"children": [],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "708df0fa-e9a4-4c23-bd85-8957f6d30faf"
+ }
+ },
"ngId": "julich brain mni152 v22 left",
"originDatasets": [
{
- "filename": "LB (Amygdala) [v6.4, ICBM 2009c Asymmetric, left hemisphere]",
"kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "fa4cab6a-1cec-4cec-b481-90aa0cc7d96c"
+ "kgId": "fa4cab6a-1cec-4cec-b481-90aa0cc7d96c",
+ "filename": "LB (Amygdala) [v6.4, ICBM 2009c Asymmetric, left hemisphere]"
}
],
"ontologyLabelIndex": 187
@@ -308,18 +355,31 @@
"labelIndex": 90,
"doi": "https://doi.org/10.25493/C3X0-NV3",
"synonyms": [],
+ "rgb": null,
"children": [],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "708df0fa-e9a4-4c23-bd85-8957f6d30faf"
+ }
+ },
"ngId": "julich brain mni152 v22 right",
"originDatasets": [
{
- "filename": "LB (Amygdala) [v6.4, ICBM 2009c Asymmetric, right hemisphere]",
"kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "fa4cab6a-1cec-4cec-b481-90aa0cc7d96c"
+ "kgId": "fa4cab6a-1cec-4cec-b481-90aa0cc7d96c",
+ "filename": "LB (Amygdala) [v6.4, ICBM 2009c Asymmetric, right hemisphere]"
}
],
"ontologyLabelIndex": 187
}
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "708df0fa-e9a4-4c23-bd85-8957f6d30faf"
+ }
+ }
}
]
},
@@ -346,13 +406,20 @@
"labelIndex": 43,
"doi": "https://doi.org/10.25493/36FR-C95",
"synonyms": [],
+ "rgb": null,
"children": [],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "7aba8aef-6430-4fa7-ab54-8ecac558faed"
+ }
+ },
"ngId": "julich brain mni152 v22 left",
"originDatasets": [
{
- "filename": "CM (Amygdala) [v6.4, ICBM 2009c Asymmetric, left hemisphere]",
"kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "21ed6af0-5c39-4153-a3b8-8983530436ac"
+ "kgId": "21ed6af0-5c39-4153-a3b8-8983530436ac",
+ "filename": "CM (Amygdala) [v6.4, ICBM 2009c Asymmetric, left hemisphere]"
}
],
"ontologyLabelIndex": 290
@@ -364,18 +431,31 @@
"labelIndex": 43,
"doi": "https://doi.org/10.25493/36FR-C95",
"synonyms": [],
+ "rgb": null,
"children": [],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "7aba8aef-6430-4fa7-ab54-8ecac558faed"
+ }
+ },
"ngId": "julich brain mni152 v22 right",
"originDatasets": [
{
- "filename": "CM (Amygdala) [v6.4, ICBM 2009c Asymmetric, right hemisphere]",
"kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "21ed6af0-5c39-4153-a3b8-8983530436ac"
+ "kgId": "21ed6af0-5c39-4153-a3b8-8983530436ac",
+ "filename": "CM (Amygdala) [v6.4, ICBM 2009c Asymmetric, right hemisphere]"
}
],
"ontologyLabelIndex": 290
}
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "7aba8aef-6430-4fa7-ab54-8ecac558faed"
+ }
+ }
},
{
"name": "SF (Amygdala)",
@@ -393,13 +473,20 @@
"labelIndex": 110,
"doi": "https://doi.org/10.25493/WD31-SEA",
"synonyms": [],
+ "rgb": null,
"children": [],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "48929163-bf7b-4471-9f14-991c5225eced"
+ }
+ },
"ngId": "julich brain mni152 v22 left",
"originDatasets": [
{
- "filename": "SF (Amygdala) [v6.4, ICBM 2009c Asymmetric, left hemisphere]",
"kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "37a6a7d9-5252-4605-a792-6fefe2fde816"
+ "kgId": "37a6a7d9-5252-4605-a792-6fefe2fde816",
+ "filename": "SF (Amygdala) [v6.4, ICBM 2009c Asymmetric, left hemisphere]"
}
],
"ontologyLabelIndex": 185
@@ -411,18 +498,31 @@
"labelIndex": 109,
"doi": "https://doi.org/10.25493/WD31-SEA",
"synonyms": [],
+ "rgb": null,
"children": [],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "48929163-bf7b-4471-9f14-991c5225eced"
+ }
+ },
"ngId": "julich brain mni152 v22 right",
"originDatasets": [
{
- "filename": "SF (Amygdala) [v6.4, ICBM 2009c Asymmetric, right hemisphere]",
"kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "37a6a7d9-5252-4605-a792-6fefe2fde816"
+ "kgId": "37a6a7d9-5252-4605-a792-6fefe2fde816",
+ "filename": "SF (Amygdala) [v6.4, ICBM 2009c Asymmetric, right hemisphere]"
}
],
"ontologyLabelIndex": 185
}
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "48929163-bf7b-4471-9f14-991c5225eced"
+ }
+ }
}
]
},
@@ -449,13 +549,20 @@
"labelIndex": 79,
"doi": "https://doi.org/10.25493/99HN-XRE",
"synonyms": [],
+ "rgb": null,
"children": [],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "a964e6e6-8014-41a2-b975-754d75cbb6f2"
+ }
+ },
"ngId": "julich brain mni152 v22 left",
"originDatasets": [
{
- "filename": "VTM (Amygdala) [v6.4, ICBM 2009c Asymmetric, left hemisphere]",
"kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "9428d48e-f222-4191-96b8-02d3fa6068da"
+ "kgId": "9428d48e-f222-4191-96b8-02d3fa6068da",
+ "filename": "VTM (Amygdala) [v6.4, ICBM 2009c Asymmetric, left hemisphere]"
}
],
"ontologyLabelIndex": 228
@@ -467,18 +574,31 @@
"labelIndex": 79,
"doi": "https://doi.org/10.25493/99HN-XRE",
"synonyms": [],
+ "rgb": null,
"children": [],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "a964e6e6-8014-41a2-b975-754d75cbb6f2"
+ }
+ },
"ngId": "julich brain mni152 v22 right",
"originDatasets": [
{
- "filename": "VTM (Amygdala) [v6.4, ICBM 2009c Asymmetric, right hemisphere]",
"kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "9428d48e-f222-4191-96b8-02d3fa6068da"
+ "kgId": "9428d48e-f222-4191-96b8-02d3fa6068da",
+ "filename": "VTM (Amygdala) [v6.4, ICBM 2009c Asymmetric, right hemisphere]"
}
],
"ontologyLabelIndex": 228
}
- ]
+ ],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "a964e6e6-8014-41a2-b975-754d75cbb6f2"
+ }
+ }
},
{
"name": "IF (Amygdala)",
@@ -498,17 +618,18 @@
"synonyms": [],
"rgb": null,
"children": [],
- "_notes": {
- "warnings": [
- "Not found in MPM"
- ]
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "5a1391c8-6056-40e4-a19b-3774df42bd07"
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@@ -889,12 +1080,18 @@
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@@ -912,17 +1109,29 @@
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@@ -1149,17 +1418,29 @@
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@@ -1183,12 +1464,18 @@
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@@ -1363,12 +1698,18 @@
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@@ -1386,17 +1727,29 @@
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@@ -1420,12 +1773,18 @@
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@@ -1500,17 +1877,29 @@
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@@ -1543,12 +1932,18 @@
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@@ -1600,12 +2007,18 @@
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@@ -1657,12 +2082,18 @@
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@@ -1680,17 +2111,29 @@
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@@ -1714,12 +2157,18 @@
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@@ -1794,17 +2261,29 @@
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@@ -2074,12 +2625,18 @@
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@@ -2097,17 +2654,29 @@
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@@ -2131,12 +2700,18 @@
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@@ -2154,17 +2729,29 @@
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@@ -2188,12 +2775,18 @@
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@@ -2211,17 +2804,29 @@
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@@ -2245,12 +2850,18 @@
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@@ -2268,17 +2879,29 @@
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@@ -2302,12 +2925,18 @@
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@@ -2325,17 +2954,29 @@
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@@ -2359,12 +3000,18 @@
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@@ -4293,17 +5366,29 @@
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@@ -4327,12 +5412,18 @@
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@@ -4350,17 +5441,29 @@
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@@ -4384,12 +5487,18 @@
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@@ -4407,17 +5516,29 @@
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@@ -4441,12 +5562,18 @@
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@@ -4464,17 +5591,29 @@
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@@ -4516,12 +5655,18 @@
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@@ -4539,17 +5684,29 @@
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@@ -4573,12 +5730,18 @@
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@@ -4596,17 +5759,29 @@
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@@ -4630,12 +5805,18 @@
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@@ -4762,12 +5973,18 @@
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@@ -5056,12 +6357,18 @@
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@@ -5751,17 +7184,29 @@
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@@ -5817,17 +7268,29 @@
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@@ -5851,12 +7314,18 @@
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@@ -5931,17 +7418,29 @@
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@@ -5965,12 +7464,18 @@
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@@ -5988,17 +7493,29 @@
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@@ -6040,12 +7557,18 @@
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@@ -6063,17 +7586,29 @@
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@@ -6097,12 +7632,18 @@
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@@ -6120,17 +7661,29 @@
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@@ -6154,12 +7707,18 @@
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@@ -6177,17 +7736,29 @@
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@@ -6211,12 +7782,18 @@
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@@ -7302,18 +8960,31 @@
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{
"name": "Ventral Dentate Nucleus (Cerebellum)",
@@ -7331,13 +9002,20 @@
"labelIndex": 61,
"doi": "https://doi.org/10.25493/FQE5-5QR",
"synonyms": [],
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@@ -7349,18 +9027,31 @@
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"doi": "https://doi.org/10.25493/FQE5-5QR",
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+ "filename": "Ventral Dentate Nucleus (Cerebellum) [v6.2, ICBM 2009c Asymmetric, right hemisphere]"
}
],
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}
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}
]
},
@@ -7387,13 +9078,20 @@
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"doi": "https://doi.org/10.25493/3YJ9-S6G",
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+ "kgId": "e8abfe3d-8b64-45c2-8853-314d82873273"
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{
- "filename": "Fastigial Nucleus (Cerebellum) [v6.2, ICBM 2009c Asymmetric, left hemisphere]",
"kgSchema": "minds/core/dataset/v1.0.0",
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+ "kgId": "dec5c207-c0d9-4f25-a333-1db039c570cb",
+ "filename": "Fastigial Nucleus (Cerebellum) [v6.2, ICBM 2009c Asymmetric, left hemisphere]"
}
],
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@@ -7405,18 +9103,31 @@
"labelIndex": 101,
"doi": "https://doi.org/10.25493/3YJ9-S6G",
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+ "kgId": "dec5c207-c0d9-4f25-a333-1db039c570cb",
+ "filename": "Fastigial Nucleus (Cerebellum) [v6.2, ICBM 2009c Asymmetric, right hemisphere]"
}
],
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}
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}
]
},
@@ -7440,36 +9151,23 @@
"name": "Interposed Nucleus (Cerebellum)",
"arealabel": "Interposed-Nucleus",
"status": "left hemisphere",
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"doi": "https://doi.org/10.25493/8PTB-JDH",
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- "children": [
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- "doi": "https://doi.org/10.25493/8PTB-JDH",
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- "kgId": "658a7f71-1b94-4f4a-8f15-726043bbb52a"
- }
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+ "kgId": "658a7f71-1b94-4f4a-8f15-726043bbb52a",
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}
]
},
@@ -7477,25 +9175,32 @@
"name": "Interposed Nucleus (Cerebellum)",
"arealabel": "Interposed-Nucleus",
"status": "right hemisphere",
- "labelIndex": 108,
+ "labelIndex": "251",
"doi": "https://doi.org/10.25493/8PTB-JDH",
"synonyms": [],
+ "rgb": null,
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+ "kgId": "85e7bb13-4b73-4f6f-8222-3adb7b800788"
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"ngId": "julich brain mni152 v22 right",
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- "kgId": "658a7f71-1b94-4f4a-8f15-726043bbb52a"
+ "kgId": "658a7f71-1b94-4f4a-8f15-726043bbb52a",
+ "filename": "Interposed Nucleus (Cerebellum) [v6.2, ICBM 2009c Asymmetric, right hemisphere]"
}
- ],
- "ontologyLabelIndex": 251
+ ]
}
],
- "_notes": {
- "warnings": [
- "Not found in MPM"
- ]
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "85e7bb13-4b73-4f6f-8222-3adb7b800788"
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}
]
@@ -7507,41 +9212,48 @@
]
},
{
- "name": "GapMap",
- "rgb": [
- 255,
- 255,
- 255
- ],
+ "name": "GapMaps",
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{
"name": "GapMap Frontal-I (GapMap)",
"children": [
{
"name": "GapMap Frontal-I (GapMap)",
- "labelIndex": 13,
"status": "left hemisphere",
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"ngId": "julich brain mni152 v22 left",
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"rgb": [
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],
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+ "kgId": "7383f4c6-d678-4539-8d36-33501eef55d3",
+ "filename": "GapMap Frontal-I (GapMap) [v9.0, ICBM 2009c Asymmetric, left hemisphere]"
+ }
+ ]
},
{
"name": "GapMap Frontal-I (GapMap)",
- "labelIndex": 13,
"status": "right hemisphere",
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"ngId": "julich brain mni152 v22 right",
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"rgb": [
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255,
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],
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+ "kgId": "7383f4c6-d678-4539-8d36-33501eef55d3",
+ "filename": "GapMap Frontal-I (GapMap) [v9.0, ICBM 2009c Asymmetric, right hemisphere]"
+ }
+ ]
}
]
},
@@ -7550,29 +9262,41 @@
"children": [
{
"name": "GapMap Frontal-to-Occipital (GapMap)",
- "labelIndex": 32,
"status": "left hemisphere",
+ "labelIndex": 32,
+ "ontologyLabelIndex": 504,
"ngId": "julich brain mni152 v22 left",
- "children": [],
"rgb": [
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],
- "ontologyLabelIndex": 504
+ "originDatasets": [
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+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "83b4b184-57be-4385-a1b2-2cec8519509d",
+ "filename": "GapMap Frontal-to-Occipital (GapMap) [v9.0, ICBM 2009c Asymmetric, left hemisphere]"
+ }
+ ]
},
{
"name": "GapMap Frontal-to-Occipital (GapMap)",
- "labelIndex": 32,
"status": "right hemisphere",
+ "labelIndex": 32,
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"ngId": "julich brain mni152 v22 right",
- "children": [],
"rgb": [
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161,
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],
- "ontologyLabelIndex": 504
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+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "83b4b184-57be-4385-a1b2-2cec8519509d",
+ "filename": "GapMap Frontal-to-Occipital (GapMap) [v9.0, ICBM 2009c Asymmetric, right hemisphere]"
+ }
+ ]
}
]
},
@@ -7581,29 +9305,41 @@
"children": [
{
"name": "GapMap Temporal-to-Parietal (GapMap)",
- "labelIndex": 59,
"status": "left hemisphere",
+ "labelIndex": 59,
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"ngId": "julich brain mni152 v22 left",
- "children": [],
"rgb": [
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],
- "ontologyLabelIndex": 503
+ "originDatasets": [
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+ "kgId": "822ef227-264a-4584-8c3b-e41e33e16fe7",
+ "filename": "GapMap Temporal-to-Parietal (GapMap) [v9.0, ICBM 2009c Asymmetric, left hemisphere]"
+ }
+ ]
},
{
"name": "GapMap Temporal-to-Parietal (GapMap)",
- "labelIndex": 59,
"status": "right hemisphere",
+ "labelIndex": 59,
+ "ontologyLabelIndex": 503,
"ngId": "julich brain mni152 v22 right",
- "children": [],
"rgb": [
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90,
161
],
- "ontologyLabelIndex": 503
+ "originDatasets": [
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+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "822ef227-264a-4584-8c3b-e41e33e16fe7",
+ "filename": "GapMap Temporal-to-Parietal (GapMap) [v9.0, ICBM 2009c Asymmetric, right hemisphere]"
+ }
+ ]
}
]
},
@@ -7612,29 +9348,41 @@
"children": [
{
"name": "GapMap Frontal-II (GapMap)",
- "labelIndex": 89,
"status": "left hemisphere",
+ "labelIndex": 89,
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"ngId": "julich brain mni152 v22 left",
- "children": [],
"rgb": [
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],
- "ontologyLabelIndex": 501
+ "originDatasets": [
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+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "86510749-dec2-4dff-bc3a-f9fb98c5447d",
+ "filename": "GapMap Frontal-II (GapMap) [v9.0, ICBM 2009c Asymmetric, left hemisphere]"
+ }
+ ]
},
{
"name": "GapMap Frontal-II (GapMap)",
- "labelIndex": 89,
"status": "right hemisphere",
+ "labelIndex": 89,
+ "ontologyLabelIndex": 501,
"ngId": "julich brain mni152 v22 right",
- "children": [],
"rgb": [
255,
135,
15
],
- "ontologyLabelIndex": 501
+ "originDatasets": [
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+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "86510749-dec2-4dff-bc3a-f9fb98c5447d",
+ "filename": "GapMap Frontal-II (GapMap) [v9.0, ICBM 2009c Asymmetric, right hemisphere]"
+ }
+ ]
}
]
},
@@ -7643,29 +9391,41 @@
"children": [
{
"name": "GapMap Frontal-to-Temporal (GapMap)",
- "labelIndex": 95,
"status": "left hemisphere",
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"ngId": "julich brain mni152 v22 left",
- "children": [],
"rgb": [
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],
- "ontologyLabelIndex": 502
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+ "kgId": "48f5905e-2cc5-41ae-b37a-6eb1438337c5",
+ "filename": "GapMap Frontal-to-Temporal (GapMap) [v9.0, ICBM 2009c Asymmetric, left hemisphere]"
+ }
+ ]
},
{
"name": "GapMap Frontal-to-Temporal (GapMap)",
- "labelIndex": 95,
"status": "right hemisphere",
+ "labelIndex": 95,
+ "ontologyLabelIndex": 502,
"ngId": "julich brain mni152 v22 right",
- "children": [],
"rgb": [
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],
- "ontologyLabelIndex": 502
+ "originDatasets": [
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+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "48f5905e-2cc5-41ae-b37a-6eb1438337c5",
+ "filename": "GapMap Frontal-to-Temporal (GapMap) [v9.0, ICBM 2009c Asymmetric, right hemisphere]"
+ }
+ ]
}
]
}
diff --git a/src/res/ext/colin.json b/src/res/ext/colin.json
index 691b21a62..2d1787446 100644
--- a/src/res/ext/colin.json
+++ b/src/res/ext/colin.json
@@ -40,6 +40,12 @@
}
]
},
+ "_meta": {
+ "regions": {
+ "repo": "https://gin.g-node.org/xgui3783/20200811-julich-brain-v2-ontology.git",
+ "commit": "e10aaa86a002cdefe2e99172e73c416570c0c9d3"
+ }
+ },
"regions": [
{
"name": "telencephalon",
@@ -85,13 +91,20 @@
"labelIndex": 75,
"doi": "https://doi.org/10.25493/7SEP-P2V",
"synonyms": [],
+ "rgb": null,
"children": [],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "bb111a95-e04c-4987-8254-4af4ed8b0022"
+ }
+ },
"ngId": "julich brain colin v22 left",
"originDatasets": [
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- "filename": "Ch 123 (Basal Forebrain) [v4.2, Colin 27, left hemisphere]",
"kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "147aaab9-d5f2-48db-80f3-95adc9e7e8a6"
+ "kgId": "147aaab9-d5f2-48db-80f3-95adc9e7e8a6",
+ "filename": "Ch 123 (Basal Forebrain) [v4.2, Colin 27, left hemisphere]"
}
],
"ontologyLabelIndex": 286
@@ -103,18 +116,31 @@
"labelIndex": 75,
"doi": "https://doi.org/10.25493/7SEP-P2V",
"synonyms": [],
+ "rgb": null,
"children": [],
+ "fullId": {
+ "kg": {
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+ "kgId": "bb111a95-e04c-4987-8254-4af4ed8b0022"
+ }
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"ngId": "julich brain colin v22 right",
"originDatasets": [
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"kgSchema": "minds/core/dataset/v1.0.0",
- "kgId": "147aaab9-d5f2-48db-80f3-95adc9e7e8a6"
+ "kgId": "147aaab9-d5f2-48db-80f3-95adc9e7e8a6",
+ "filename": "Ch 123 (Basal Forebrain) [v4.2, Colin 27, right hemisphere]"
}
],
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}
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@@ -141,13 +167,20 @@
"labelIndex": 12,
"doi": "https://doi.org/10.25493/VZJ5-8WJ",
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@@ -1596,12 +2003,18 @@
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@@ -1653,12 +2078,18 @@
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@@ -1676,17 +2107,29 @@
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@@ -1710,12 +2153,18 @@
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@@ -1733,17 +2182,29 @@
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@@ -1767,12 +2228,18 @@
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@@ -1790,17 +2257,29 @@
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@@ -1881,12 +2378,18 @@
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@@ -1947,12 +2462,18 @@
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@@ -2150,17 +2725,29 @@
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@@ -2241,12 +2846,18 @@
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@@ -2264,17 +2875,29 @@
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@@ -2298,12 +2921,18 @@
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@@ -2355,12 +2996,18 @@
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@@ -2544,12 +3239,18 @@
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@@ -2567,17 +3268,29 @@
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@@ -2601,12 +3314,18 @@
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@@ -2624,17 +3343,29 @@
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@@ -2667,12 +3398,18 @@
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@@ -2690,17 +3427,29 @@
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@@ -2724,12 +3473,18 @@
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@@ -2747,17 +3502,29 @@
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@@ -2790,12 +3557,18 @@
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@@ -2847,12 +3632,18 @@
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@@ -5724,12 +7151,18 @@
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@@ -5747,17 +7180,29 @@
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@@ -5790,12 +7235,18 @@
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@@ -5813,17 +7264,29 @@
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@@ -5847,12 +7310,18 @@
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"ngId": "julich brain colin v22 right",
- "children": [],
"rgb": [
104,
161,
93
],
- "ontologyLabelIndex": 504
+ "originDatasets": [
+ {
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "83b4b184-57be-4385-a1b2-2cec8519509d",
+ "filename": "GapMap Frontal-to-Occipital (GapMap) [v9.0, Colin 27, right hemisphere]"
+ }
+ ]
}
]
},
@@ -7577,29 +9301,41 @@
"children": [
{
"name": "GapMap Temporal-to-Parietal (GapMap)",
- "labelIndex": 59,
"status": "left hemisphere",
+ "labelIndex": 59,
+ "ontologyLabelIndex": 503,
"ngId": "julich brain colin v22 left",
- "children": [],
"rgb": [
76,
90,
161
],
- "ontologyLabelIndex": 503
+ "originDatasets": [
+ {
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "822ef227-264a-4584-8c3b-e41e33e16fe7",
+ "filename": "GapMap Temporal-to-Parietal (GapMap) [v9.0, Colin 27, left hemisphere]"
+ }
+ ]
},
{
"name": "GapMap Temporal-to-Parietal (GapMap)",
- "labelIndex": 59,
"status": "right hemisphere",
+ "labelIndex": 59,
+ "ontologyLabelIndex": 503,
"ngId": "julich brain colin v22 right",
- "children": [],
"rgb": [
76,
90,
161
],
- "ontologyLabelIndex": 503
+ "originDatasets": [
+ {
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "822ef227-264a-4584-8c3b-e41e33e16fe7",
+ "filename": "GapMap Temporal-to-Parietal (GapMap) [v9.0, Colin 27, right hemisphere]"
+ }
+ ]
}
]
},
@@ -7608,29 +9344,41 @@
"children": [
{
"name": "GapMap Frontal-II (GapMap)",
- "labelIndex": 89,
"status": "left hemisphere",
+ "labelIndex": 89,
+ "ontologyLabelIndex": 501,
"ngId": "julich brain colin v22 left",
- "children": [],
"rgb": [
255,
135,
15
],
- "ontologyLabelIndex": 501
+ "originDatasets": [
+ {
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "86510749-dec2-4dff-bc3a-f9fb98c5447d",
+ "filename": "GapMap Frontal-II (GapMap) [v9.0, Colin 27, left hemisphere]"
+ }
+ ]
},
{
"name": "GapMap Frontal-II (GapMap)",
- "labelIndex": 89,
"status": "right hemisphere",
+ "labelIndex": 89,
+ "ontologyLabelIndex": 501,
"ngId": "julich brain colin v22 right",
- "children": [],
"rgb": [
255,
135,
15
],
- "ontologyLabelIndex": 501
+ "originDatasets": [
+ {
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "86510749-dec2-4dff-bc3a-f9fb98c5447d",
+ "filename": "GapMap Frontal-II (GapMap) [v9.0, Colin 27, right hemisphere]"
+ }
+ ]
}
]
},
@@ -7639,29 +9387,41 @@
"children": [
{
"name": "GapMap Frontal-to-Temporal (GapMap)",
- "labelIndex": 96,
"status": "left hemisphere",
+ "labelIndex": 96,
+ "ontologyLabelIndex": 502,
"ngId": "julich brain colin v22 left",
- "children": [],
"rgb": [
161,
24,
74
],
- "ontologyLabelIndex": 502
+ "originDatasets": [
+ {
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "48f5905e-2cc5-41ae-b37a-6eb1438337c5",
+ "filename": "GapMap Frontal-to-Temporal (GapMap) [v9.0, Colin 27, left hemisphere]"
+ }
+ ]
},
{
"name": "GapMap Frontal-to-Temporal (GapMap)",
- "labelIndex": 95,
"status": "right hemisphere",
+ "labelIndex": 96,
+ "ontologyLabelIndex": 502,
"ngId": "julich brain colin v22 right",
- "children": [],
"rgb": [
161,
24,
74
],
- "ontologyLabelIndex": 502
+ "originDatasets": [
+ {
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "48f5905e-2cc5-41ae-b37a-6eb1438337c5",
+ "filename": "GapMap Frontal-to-Temporal (GapMap) [v9.0, Colin 27, right hemisphere]"
+ }
+ ]
}
]
}
diff --git a/src/services/effect/effect.spec.ts b/src/services/effect/effect.spec.ts
index d62f8d8b0..dc5c1b5a7 100644
--- a/src/services/effect/effect.spec.ts
+++ b/src/services/effect/effect.spec.ts
@@ -10,32 +10,6 @@ import { defaultRootState } from '../stateStore.service'
const colinsJson = require('!json-loader!../../res/ext/colin.json')
-
-const hoc1 = {
- name: "Area hOc1 (V1, 17, CalcS) - left hemisphere",
- rgb: [
- 190,
- 132,
- 147,
- ],
- labelIndex: 8,
- ngId: "jubrain colin v18 left",
- children: [],
- status: "publicP",
- position: [
- -8533787,
- -84646549,
- 1855106,
- ],
- originDatasets: [
- {
- kgSchema: "minds/core/dataset/v1.0.0",
- kgId: "5c669b77-c981-424a-858d-fe9f527dbc07",
- filename: "Area hOc1 (V1, 17, CalcS) [v2.4, Colin 27, left hemisphere]"
- }
- ],
-}
-
describe('effect.ts', () => {
describe('getGetRegionFromLabelIndexId', () => {
it('translateds hoc1 from labelIndex to region', () => {
@@ -46,8 +20,10 @@ describe('effect.ts', () => {
updated: true,
},
})
- const fetchedRegion = getRegionFromlabelIndexId({ labelIndexId: 'jubrain colin v18 left#8' })
- expect(fetchedRegion).toEqual(hoc1)
+ const fetchedRegion = getRegionFromlabelIndexId({ labelIndexId: 'julich brain colin v22 left#116' })
+ expect(fetchedRegion).toBeTruthy()
+ expect(fetchedRegion.fullId.kg.kgId).toEqual('5151ab8f-d8cb-4e67-a449-afe2a41fb007')
+
})
})
diff --git a/src/services/state/uiState.store.helper.ts b/src/services/state/uiState.store.helper.ts
index 8f3ead0a1..176e86c14 100644
--- a/src/services/state/uiState.store.helper.ts
+++ b/src/services/state/uiState.store.helper.ts
@@ -41,6 +41,7 @@ export enum EnumWidgetTypes{
export interface IDatasetPreviewData{
datasetId: string
filename: string
+ datasetSchema?: string
}
export type TypeOpenedWidget = {
diff --git a/src/ui/databrowserModule/preview/previewComponentWrapper/previewCW.component.ts b/src/ui/databrowserModule/preview/previewComponentWrapper/previewCW.component.ts
index 5161a4ed7..04d5130a5 100644
--- a/src/ui/databrowserModule/preview/previewComponentWrapper/previewCW.component.ts
+++ b/src/ui/databrowserModule/preview/previewComponentWrapper/previewCW.component.ts
@@ -5,6 +5,7 @@ import { Observable, fromEvent, Subscription, of, throwError } from "rxjs";
import { switchMapTo, catchError, take, concatMap, map, retryWhen, delay } from "rxjs/operators";
import { DomSanitizer, SafeResourceUrl } from "@angular/platform-browser";
import { ARIA_LABELS } from 'common/constants'
+import { DS_PREVIEW_URL } from 'src/util/constants'
const {
DOWNLOAD_PREVIEW,
@@ -78,6 +79,8 @@ export class PreviewComponentWrapper{
this.backendUrl = backendUrl
this.datasetName = datasetName
}
+
+ this.backendUrl = this.backendUrl || DS_PREVIEW_URL
}
public downloadHref: SafeResourceUrl
--
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