From 0b9a552a008fd44f956ad6f6b87e44d93ea85558 Mon Sep 17 00:00:00 2001
From: ch-schiffer <c.schiffer@fz-juelich.de>
Date: Tue, 8 Jun 2021 14:22:17 +0200
Subject: [PATCH] Added MGB
---
src/res/ext/bigbrain.json | 74 ++++++++++++++++++
src/res/ext/bigbrainNehubaConfig.json | 105 ++++++++++++++++++++++++++
2 files changed, 179 insertions(+)
diff --git a/src/res/ext/bigbrain.json b/src/res/ext/bigbrain.json
index adbc484da..a58de96c8 100644
--- a/src/res/ext/bigbrain.json
+++ b/src/res/ext/bigbrain.json
@@ -1124,6 +1124,80 @@
]
}
]
+ },
+ {
+ "name": "medial geniculate body",
+ "children": [
+ {
+ "name": "MGB-MGBd (CGM, Metathalamus)",
+ "ngId": "MGBd",
+ "status": "fully mapped",
+ "labelIndex": 1,
+ "children": [],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "b90d1d0c-6032-4d7e-b659-049a8dac4215"
+ }
+ },
+ "relatedAreas": [],
+ "originDatasets":[
+ {
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "6e3ca542-af3b-4869-b3ec-38986c4b1395",
+ "format": {
+ "name": "Full 3D map"
+ }
+ }
+ ]
+ },
+ {
+ "name": "MGB-MGBm (CGM, Metathalamus)",
+ "ngId": "MGBm",
+ "status": "fully mapped",
+ "labelIndex": 1,
+ "children": [],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "b90d1d0c-6032-4d7e-b659-049a8dac4215"
+ }
+ },
+ "relatedAreas": [],
+ "originDatasets":[
+ {
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "6e3ca542-af3b-4869-b3ec-38986c4b1395",
+ "format": {
+ "name": "Full 3D map"
+ }
+ }
+ ]
+ },
+ {
+ "name": "MGB-MGBv (CGM, Metathalamus)",
+ "ngId": "MGBv",
+ "status": "fully mapped",
+ "labelIndex": 1,
+ "children": [],
+ "fullId": {
+ "kg": {
+ "kgSchema": "minds/core/parcellationregion/v1.0.0",
+ "kgId": "b90d1d0c-6032-4d7e-b659-049a8dac4215"
+ }
+ },
+ "relatedAreas": [],
+ "originDatasets":[
+ {
+ "kgSchema": "minds/core/dataset/v1.0.0",
+ "kgId": "6e3ca542-af3b-4869-b3ec-38986c4b1395",
+ "format": {
+ "name": "Full 3D map"
+ }
+ }
+ ]
+ }
+ ]
}
]
}
diff --git a/src/res/ext/bigbrainNehubaConfig.json b/src/res/ext/bigbrainNehubaConfig.json
index dfe249aa7..04142e6ad 100644
--- a/src/res/ext/bigbrainNehubaConfig.json
+++ b/src/res/ext/bigbrainNehubaConfig.json
@@ -478,6 +478,111 @@
]
]
},
+ "MGBd": {
+ "type": "segmentation",
+ "source": "precomputed://https://neuroglancer-dev.humanbrainproject.org/precomputed/BigBrainRelease.2015/2021_04_27_mgb/2021_04_27_MGBd/",
+ "segments": [
+ "0"
+ ],
+ "selectedAlpha": 0.45,
+ "notSelectedAlpha": 0,
+ "transform": [
+ [
+ 1,
+ 0,
+ 0,
+ -70677184.0
+ ],
+ [
+ 0,
+ 1,
+ 0,
+ -7290000.0
+ ],
+ [
+ 0,
+ 0,
+ 1,
+ -58788284.0
+ ],
+ [
+ 0,
+ 0,
+ 0,
+ 1
+ ]
+ ]
+ },
+ "MGBm": {
+ "type": "segmentation",
+ "source": "precomputed://https://neuroglancer-dev.humanbrainproject.org/precomputed/BigBrainRelease.2015/2021_04_27_mgb/2021_04_27_MGBm/",
+ "segments": [
+ "0"
+ ],
+ "selectedAlpha": 0.45,
+ "notSelectedAlpha": 0,
+ "transform": [
+ [
+ 1,
+ 0,
+ 0,
+ -70677184.0
+ ],
+ [
+ 0,
+ 1,
+ 0,
+ -7290000.0
+ ],
+ [
+ 0,
+ 0,
+ 1,
+ -58788284.0
+ ],
+ [
+ 0,
+ 0,
+ 0,
+ 1
+ ]
+ ]
+ },
+ "MGBv": {
+ "type": "segmentation",
+ "source": "precomputed://https://neuroglancer-dev.humanbrainproject.org/precomputed/BigBrainRelease.2015/2021_04_27_mgb/2021_04_27_MGBv/",
+ "segments": [
+ "0"
+ ],
+ "selectedAlpha": 0.45,
+ "notSelectedAlpha": 0,
+ "transform": [
+ [
+ 1,
+ 0,
+ 0,
+ -70677184.0
+ ],
+ [
+ 0,
+ 1,
+ 0,
+ -7290000.0
+ ],
+ [
+ 0,
+ 0,
+ 1,
+ -58788284.0
+ ],
+ [
+ 0,
+ 0,
+ 0,
+ 1
+ ]
+ ]
+ },
"cortical layers": {
"type": "segmentation",
"source": "precomputed://https://neuroglancer-dev.humanbrainproject.org/precomputed/BigBrainRelease.2015/2019_05_27_cortical_layers",
--
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