diff --git a/moose-core/.travis.yml b/moose-core/.travis.yml index d1de05b822fc17bd41eb64d523a7a150ee23d96b..294e0896243791f983832cc2272705c819a76702 100644 --- a/moose-core/.travis.yml +++ b/moose-core/.travis.yml @@ -2,8 +2,6 @@ language: cpp sudo: required group: edge -services: - - docker os: - linux @@ -17,6 +15,13 @@ notifications: on_success: change on_failure: always +before_script: +- echo "OSX related" +- if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then nvm get head || true; fi +- if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then ./.travis/travis_prepare_osx.sh; fi +- if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then sudo ./.travis/travis_prepare_linux.sh; fi + + before_script: - echo "OSX related" - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then nvm get head || true; fi @@ -24,8 +29,8 @@ before_script: - if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then sudo ./.travis/travis_prepare_linux.sh; fi script: -- -- python2 -m compileall -q . + +- python2 -m compileall -q . || echo "Python2 not found" - if type python3 > /dev/null; then python3 -m compileall -q . ; fi - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then ./.travis/travis_build_osx.sh; fi - if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then ./.travis/travis_build_linux.sh; fi diff --git a/moose-core/.travis/travis_build_linux.sh b/moose-core/.travis/travis_build_linux.sh index 83cce12028721c2bf551f2b6b9579761237c1663..e475b2e0bf622b47ac46a08f0b14eaa308c08b03 100755 --- a/moose-core/.travis/travis_build_linux.sh +++ b/moose-core/.travis/travis_build_linux.sh @@ -1,4 +1,5 @@ #!/usr/bin/env bash + #=============================================================================== # # FILE: travis_build_linux.sh @@ -17,44 +18,58 @@ # REVISION: --- #=============================================================================== -set -o nounset # Treat unset variables as an error -set -e +set -e -x PYTHON2="/usr/bin/python2" PYTHON3="/usr/bin/python3" -MAKEFLAGS="-j4" +MAKEFLAGS="-j`nproc`" + + +if [ ! -n "$MAKE" ]; then + MAKE="make -j`nproc`" +else + MAKE="$MAKE -j`nproc`" +fi + +unset PYTHONPATH # Bug: `which python` returns /opt/bin/python* etc on travis. For which numpy # many not be available. Therefore, it is neccessary to use fixed path for # python executable. +$PYTHON2 -m compileall -q . +if type $PYTHON3 > /dev/null; then $PYTHON3 -m compileall -q . ; fi + +echo "Currently in `pwd`" ( - $PYTHON2 -m compileall -q . - if type $PYTHON3 > /dev/null; then $PYTHON3 -m compileall -q . ; fi + mkdir -p _GSL_BUILD && cd _GSL_BUILD + cmake -DDEBUG=ON -DPYTHON_EXECUTABLE="$PYTHON2" .. + $MAKE && ctest --output-on-failure +) - mkdir -p _GSL_BUILD && cd _GSL_BUILD && \ - cmake -DDEBUG=ON -DPYTHON_EXECUTABLE="$PYTHON2" .. - make && ctest --output-on-failure - cd .. # Now with boost. +( + # Now with boost. mkdir -p _BOOST_BUILD && cd _BOOST_BUILD && \ cmake -DWITH_BOOST=ON -DDEBUG=ON -DQUIET_MODE=ON -DPYTHON_EXECUTABLE="$PYTHON2" .. - make && ctest --output-on-failure - cd .. - - # This is only applicable on linux build. - echo "Python3: Removed python2-networkx and install python3" - if type $PYTHON3 > /dev/null; then - sudo apt-get remove -qq python-networkx - sudo apt-get install -qq python3-networkx + $MAKE && ctest --output-on-failure +) + +# This is only applicable on linux build. +echo "Python3: Removed python2-networkx and install python3" +if type $PYTHON3 > /dev/null; then + sudo apt-get remove -qq python-networkx + sudo apt-get install -qq python3-networkx + ( mkdir -p _GSL_BUILD2 && cd _GSL_BUILD2 && \ cmake -DDEBUG=ON -DPYTHON_EXECUTABLE="$PYTHON3" .. - make && ctest --output-on-failure - cd .. # Now with BOOST and python3 + $MAKE && ctest --output-on-failure + ) + ( mkdir -p _BOOST_BUILD2 && cd _BOOST_BUILD2 && \ cmake -DWITH_BOOST=ON -DDEBUG=ON -DPYTHON_EXECUTABLE="$PYTHON3" .. - make && ctest --output-on-failure - cd .. && echo "All done" - else - echo "Python3 is not found. Build disabled" - fi -) + $MAKE && ctest --output-on-failure + ) + echo "All done" +else + echo "Python3 is not found. Build disabled" +fi diff --git a/moose-core/.travis/travis_build_osx.sh b/moose-core/.travis/travis_build_osx.sh index 44ff04c8ab44657ef88f2960fb971726853bd043..0b446a202543a7f70409f51397ab44c10a172f7f 100755 --- a/moose-core/.travis/travis_build_osx.sh +++ b/moose-core/.travis/travis_build_osx.sh @@ -21,19 +21,23 @@ set -o nounset # Treat unset variables as an error set -e ( + + # Make sure not to pick up python from /opt. + PATH=/usr/bin:/usr/local/bin:$PATH mkdir -p _GSL_BUILD && cd _GSL_BUILD \ && cmake -DQUIET_MODE=ON -DDEBUG=ON \ -DPYTHON_EXECUTABLE=`which python` .. - make && ctest --output-on-failure + make -j3 && ctest --output-on-failure + cd .. # Now with boost. mkdir -p _BOOST_BUILD && cd _BOOST_BUILD \ && cmake -DWITH_BOOST=ON -DDEBUG=ON \ -DPYTHON_EXECUTABLE=`which python` .. - make && ctest --output-on-failure + + make -j3 && ctest --output-on-failure cd .. + set +e - # Now test the brew formula - cd ~ - brew tap BhallaLab/moose - brew install moose ) +set +e + diff --git a/moose-core/.travis/travis_prepare_linux.sh b/moose-core/.travis/travis_prepare_linux.sh index f2110440121110a95f0ad3f64c60ffb78ac6864c..484f1a4ec09e5b4ac3f4a4e3b778a5529746d00f 100755 --- a/moose-core/.travis/travis_prepare_linux.sh +++ b/moose-core/.travis/travis_prepare_linux.sh @@ -30,6 +30,6 @@ apt-get install -qq libgsl0-dev apt-get install -qq python-pip python3-pip apt-get install -qq libgraphviz-dev -# Dependencies for NML2 +# Dependencies for NML2 apt-get install -qq python-scipy python3-scipy -pip install pyNeuroML libNeuroML +#pip install pyNeuroML libNeuroML diff --git a/moose-core/.travis/travis_prepare_osx.sh b/moose-core/.travis/travis_prepare_osx.sh index 8c95810b76ce59ea217537a933b1bbd471b63f27..65bff743617d0883dddf034c8cc7b7e17fcae747 100755 --- a/moose-core/.travis/travis_prepare_osx.sh +++ b/moose-core/.travis/travis_prepare_osx.sh @@ -26,14 +26,19 @@ brew install gsl brew install hdf5 brew install python brew install numpy +brew install boost + #brew outdated python || brew install python #brew outdated numpy || brew install homebrew/python/numpy brew unlink numpy && brew link numpy || echo "Failed to link numpy" # Numpy caveats mkdir -p $HOME/Library/Python/2.7/lib/python/site-packages echo 'import sys; sys.path.insert(1, "/usr/local/lib/python2.7/site-packages")' >> $HOME/Library/Python/2.7/lib/python/site-packages/homebrew.pth + +# To make sure that we do not pick python from /opt etc. +PATH=/usr/local/bin:/usr/bin:$PATH # ensurepip -#python -m ensurepip -pip2 install matplotlib --user -pip2 install pyNeuroML libNeuroML --user -pip2 install scipy --user +python -m ensurepip +python -m pip install matplotlib --user +python -m pip install pyNeuroML libNeuroML --user +python -m pip install scipy --user diff --git a/moose-core/CMakeLists.txt b/moose-core/CMakeLists.txt index c03b43d24ffc5c591f3ca649567e6a6c274d0eb1..dd598b0d3d5a86904c25ab4cc5f06d8b09cf190e 100644 --- a/moose-core/CMakeLists.txt +++ b/moose-core/CMakeLists.txt @@ -1,7 +1,8 @@ set(CMAKE_LEGACY_CYGWIN_WIN32 0) cmake_minimum_required(VERSION 2.8 FATAL_ERROR) -project(moose-core) + +project(pymoose) if(COMMAND cmake_policy) cmake_policy(SET CMP0003 NEW) @@ -12,7 +13,7 @@ if(COMMAND cmake_policy) endif(COMMAND cmake_policy) -set(CMAKE_MODULE_PATH "${CMAKE_CURRENT_SOURCE_DIR}/cmake_modules") +set(CMAKE_MODULE_PATH "${CMAKE_SOURCE_DIR}/cmake_modules") include(CheckCXXCompiler.cmake) include(CheckIncludeFileCXX) include(FindPkgConfig) @@ -20,24 +21,29 @@ include(FindPkgConfig) # getgit revision number find_program( GIT_EXEC git ) if(GIT_EXEC) - execute_process(COMMAND ${GIT_EXEC} rev-parse --short HEAD + execute_process( + COMMAND ${GIT_EXEC} rev-parse --short HEAD OUTPUT_VARIABLE GIT_HEAD OUTPUT_STRIP_TRAILING_WHITESPACE - ) + ) +else(GIT_EXEC) + set(GIT_HEAD 'HEAD') + message(STATUS "Couldn't fetch version from git repo" ) endif() # If from command line, version info is not passed, use the git to generate a # version file. If GIT fails, use the previous known version. if(NOT VERSION_MOOSE) set(VERSION_MOOSE "3.2.0-${GIT_HEAD}") -endif( ) +endif() + add_definitions( -DMOOSE_VERSION="${VERSION_MOOSE}") message( STATUS "MOOSE Version ${VERSION_MOOSE}" ) # Write VERSION to a file VERSION so that setup.cmake.py can use it. set(VERSION_FILE ${CMAKE_CURRENT_SOURCE_DIR}/python/VERSION) -message(STATUS "+ Writing ${VERSION_MOOSE} to ${VERSION_FILE}" ) file(WRITE ${VERSION_FILE} ${VERSION_MOOSE} ) +message(STATUS "| Writing ${VERSION_MOOSE} to ${VERSION_FILE}" ) # This snippet is from LLVM project. # Sanity check our source directory to make sure that we are not trying to @@ -121,10 +127,7 @@ endif() ################################### TARGETS #################################### add_library(libmoose SHARED basecode/main.cpp) - -if(DEBUG) - add_executable(moose.bin basecode/main.cpp) -endif( ) +add_executable(moose.bin basecode/main.cpp) ################################### SETUP BUILD ################################ @@ -373,66 +376,94 @@ ELSE(MACOSX) ) endif(MACOSX) -if(DEBUG) - add_dependencies(moose.bin libmoose) - target_link_libraries(moose.bin moose ${CMAKE_DL_LIBS}) - if( WITH_BOOST ) - target_link_libraries( moose.bin ${Boost_LIBRARIES} ) - endif( WITH_BOOST ) -endif() +add_dependencies(moose.bin libmoose) +target_link_libraries(moose.bin moose ${CMAKE_DL_LIBS}) +if( WITH_BOOST ) + target_link_libraries( moose.bin ${Boost_LIBRARIES} ) +endif( WITH_BOOST ) ######################### BUILD PYMOOSE ######################################## +# This target is built by pymoose/CMakeLists.txt file. add_subdirectory( pymoose ) -######################### INSTALL ############################################## - -if(DEBUG) - install(TARGETS moose.bin - DESTINATION bin - ) - - install(TARGETS libmoose - DESTINATION lib - ) - - install(PROGRAMS ${CMAKE_CURRENT_SOURCE_DIR}/scripts/moose - DESTINATION bin - ) -endif( ) - -# INSTALL python module. -# This target is built by pymoose/CMakeLists.txt file. Using the --prefix option # always override debian default installation directory. It will be installed in # site-packages instead of dist-packages. # See https://bugs.launchpad.net/ubuntu/+source/python2.6/+bug/362570 # HACK: Get platform information from python and use it to fix the layout. -execute_process( - COMMAND ${PYTHON_EXECUTABLE} -mplatform OUTPUT_VARIABLE _platform_desc - ) -message( STATUS "Platform ${_platform_desc}" ) - +execute_process(COMMAND ${PYTHON_EXECUTABLE} -mplatform OUTPUT_VARIABLE _platform_desc) +message(STATUS "Platform: ${_platform_desc}") -set(EXTRA_ARGS "--prefix ${CMAKE_INSTALL_PREFIX}") +# DISTUTILS_EXTRA_ARGS may come of top-level cmake script. On DEBIAN/UBUNTU, it +# is most likely to be --install-layout=deb . +set(EXTRA_ARGS "--prefix ${CMAKE_INSTALL_PREFIX} ${DISTUTILS_EXTRA_ARGS}") -# On Debian/Ubuntu install using debian layout. +# On Debian/Ubuntu install using debian layout. # NOTE: Also create setup.cfg file which setup prefix and install-layout # suitable for DEBIAN systems. -if( ${_platform_desc} MATCHES ".*(Ubuntu|Debian).*" ) - list( APPEND EXTRA_ARGS "--install-layout=deb" ) - file(WRITE ${CMAKE_CURRENT_BINARY_DIR}/python/setup.cfg - "[install]\nprefix=/usr\ninstall-layout=deb" +if(${_platform_desc} MATCHES ".*(Ubuntu|Debian).*") + list(APPEND EXTRA_ARGS "--install-layout=deb") + file(WRITE ${CMAKE_CURRENT_BINARY_DIR}/python/setup.cfg + "[install]\nprefix=/usr\ninstall-layout=deb" ) +endif() + +# Set PYMOOSE binary distribution build and install directories. +# Target for creating bdist. This is handy for creating bdist for packaging. +# Save the binary distribution (tar.gz) to PYMOOSE_BDIST_DIR. +find_package(PythonInterp REQUIRED) +if(NOT PYMOOSE_BDIST_DIR) + set(PYMOOSE_BDIST_DIR ${CMAKE_BINARY_DIR}/bdist) endif( ) +set(PYMOOSE_BDIST_INSTALL_DIR ${CMAKE_CURRENT_BINARY_DIR}/pymoose_bdist_install) +file(MAKE_DIRECTORY ${PYMOOSE_BDIST_INSTALL_DIR}) + +# We need a custom name for bdist; same on all platform. +set(_platform "CMAKE" ) +set(PYMOOSE_BDIST_FILE ${PYMOOSE_BDIST_DIR}/pymoose-${VERSION_MOOSE}.${_platform}.tar.gz) +message(STATUS "binary distribution file ${PYMOOSE_BDIST_FILE}") +add_custom_target(bdist ALL DEPENDS ${PYMOOSE_BDIST_FILE} ) + +# Any command using setup.cmake.py must run in the same directory. +add_custom_command( OUTPUT ${PYMOOSE_BDIST_FILE} + COMMAND ${PYTHON_EXECUTABLE} setup.cmake.py bdist_dumb -p ${_platform} + -d ${PYMOOSE_BDIST_DIR} + WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/python + COMMENT "bdist is saved to ${PYMOOSE_BDIST_DIR}" + VERBATIM + ) +add_custom_command(TARGET bdist POST_BUILD + COMMAND ${CMAKE_COMMAND} -E chdir ${PYMOOSE_BDIST_INSTALL_DIR} tar xvf ${PYMOOSE_BDIST_FILE} + COMMENT "Unarchiving bdist file ${PYMOOSE_BDIST_FILE} to ${PYMOOSE_BDIST_INSTALL_DIR}" + VERBATIM + ) -# If make is called with sudo, install in system directories. Otherwise use -# --user to install in user home. -install(CODE - "execute_process( - COMMAND ${PYTHON_EXECUTABLE} setup.cmake.py install ${EXTRA_ARGS} ${PYMOOSE_EXTRA_INSTALL_ARGS} - WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/python - )" - ) +# Copy python files from source to current binary directory. Make sure to call +# this before building bdist. +file(GLOB_RECURSE PYTHON_SRCS "${CMAKE_SOURCE_DIR}/python/*") +add_custom_target(copy_pymoose DEPENDS ${PYTHON_SRCS} + COMMAND ${CMAKE_COMMAND} -E copy_directory + ${CMAKE_CURRENT_SOURCE_DIR}/python ${CMAKE_CURRENT_BINARY_DIR}/python + COMMENT "Copying required python files and other files to build directory" + VERBATIM + ) + +add_dependencies( bdist copy_pymoose ) +add_dependencies( copy_pymoose _moose ) + +######################### INSTALL ############################################## + +install(TARGETS moose.bin DESTINATION bin CONFIGURATIONS Debug) +install(TARGETS libmoose DESTINATION lib CONFIGURATIONS Debug) +install(PROGRAMS ${CMAKE_CURRENT_SOURCE_DIR}/scripts/moose + DESTINATION bin CONFIGURATIONS Debug + ) + +# install pymoose bdist. +install(DIRECTORY ${PYMOOSE_BDIST_INSTALL_DIR}/ + DESTINATION ${CMAKE_INSTALL_PREFIX} + CONFIGURATIONS Release + ) # Print message to start build process if(${CMAKE_BUILD_TOOL} MATCHES "make") @@ -494,7 +525,7 @@ foreach( _test_script ${PY_TEST_SCRIPTS} ) WORKING_DIRECTORY ${PYMOOSE_TEST_DIRECTORY} ) set_tests_properties( ${_test_name} - PROPERTIES ENVIRONMENT "PYTHONPATH=${PROJECT_BINARY_DIR}/python" + PROPERTIES ENVIRONMENT "PYTHONPATH=${CMAKE_CURRENT_BINARY_DIR}/python" ) endforeach( ) diff --git a/moose-core/pymoose/CMakeLists.txt b/moose-core/pymoose/CMakeLists.txt index adf4176b955dcc0e1c254777f304cbac14233151..b5d118b764800099c1753c54876237d34de57b54 100644 --- a/moose-core/pymoose/CMakeLists.txt +++ b/moose-core/pymoose/CMakeLists.txt @@ -11,16 +11,22 @@ set(PYMOOSE_SRCS PyRun.cpp ) +# Build _moose.so in source directory and them copy everything to +# current binary directory using cmake. add_library( _moose MODULE ${PYMOOSE_SRCS} ) -set(PYMOOSE_OUTPUT_DIRECTORY "${CMAKE_BINARY_DIR}/python/moose") +set(PYMOOSE_OUTPUT_DIRECTORY "${CMAKE_SOURCE_DIR}/python/moose") find_package(PythonInterp REQUIRED) -execute_process( COMMAND ${PYTHON_EXECUTABLE} -c - "try: import importlib.machinery; print(importlib.machinery.EXTENSION_SUFFIXES[0]) -except Exception: pass" +execute_process( COMMAND + ${PYTHON_EXECUTABLE} -c + "import importlib.machinery +print(importlib.machinery.EXTENSION_SUFFIXES[-1])" OUTPUT_VARIABLE PYTHON_SO_EXTENSION OUTPUT_STRIP_TRAILING_WHITESPACE ) +if(NOT PYTHON_SO_EXTENSION) + set(PYTHON_SO_EXTENSION ".so") +endif() message( STATUS "Python so extension ${PYTHON_SO_EXTENSION}" ) find_package(NumPy REQUIRED) @@ -43,7 +49,7 @@ set_target_properties(_moose PROPERTIES COMPILE_FLAGS "${PYTHON_INCLUDE_FLAGS}" LIBRARY_OUTPUT_DIRECTORY ${PYMOOSE_OUTPUT_DIRECTORY} PREFIX "" - SUFFIX ".so" + SUFFIX ${PYTHON_SO_EXTENSION} ) if(NOT(PYTHON_SO_EXTENSION STREQUAL "")) @@ -71,7 +77,7 @@ if(MACOSX) target_link_libraries(_moose ${SYSTEM_SHARED_LIBS} ) -ELSE(MACOSX) +else(MACOSX) target_link_libraries(_moose "-Wl,--whole-archive" ${MOOSE_LIBRARIES} @@ -81,25 +87,12 @@ ELSE(MACOSX) ${SYSTEM_SHARED_LIBS} ) endif(MACOSX) - -# Make this target dependant on all python files in python folder. -add_custom_target(copy_python_files - COMMAND ${CMAKE_COMMAND} -E copy_directory - ${CMAKE_SOURCE_DIR}/python ${CMAKE_BINARY_DIR}/python - COMMENT "Copying required python files and other files to build directory" - VERBATIM - ) - -add_dependencies(_moose copy_python_files) - - -# Print message at the end of build process. -add_custom_command( TARGET _moose POST_BUILD +add_custom_command(TARGET _moose POST_BUILD COMMAND ${CMAKE_COMMAND} -E cmake_echo_color --cyan - "MOOSE python extention is successfully built. Now " - " 1. Run 'make install' to install it for single user. " - " 2. Run 'sudo make install' to install it system-wide. " - " " - "NOTE: Run 'pip uninstall moose' to uninstall moose." + "MOOSE python extention is successfully built. Now " + " Run 'sudo make install' to install it. " + " " + "NOTE: Run 'pip uninstall moose' to uninstall moose." VERBATIM ) + diff --git a/moose-core/python/moose/moose.py b/moose-core/python/moose/moose.py index 416e2e5f44d3552f276ecc772bd1f082ddb46437..a949e5f4b5429952c38be7b9e2414694652dad9a 100644 --- a/moose-core/python/moose/moose.py +++ b/moose-core/python/moose/moose.py @@ -1,4 +1,5 @@ # -*- coding: utf-8 -*- +from __future__ import print_function, division, absolute_import # Author: Subhasis Ray # Maintainer: Dilawar Singh, Harsha Rani, Upi Bhalla diff --git a/moose-core/python/setup.cmake.py b/moose-core/python/setup.cmake.py index d9bbdf3778305d1c782c0477e56c53c492fce9b7..d74a52426fa622a500bb935adeb8824c286b1734 100644 --- a/moose-core/python/setup.cmake.py +++ b/moose-core/python/setup.cmake.py @@ -1,11 +1,7 @@ # -*- coding: utf-8 -*- +from __future__ import print_function -"""setup.py: -Script to install python targets. - -NOTE: This script is to be called by CMake. Not intended to be used standalone. - -""" +# NOTE: This script is to be called by CMake. Not intended to be used standalone. __author__ = "Dilawar Singh" __copyright__ = "Copyright 2013, Dilawar Singh and NCBS Bangalore" @@ -19,25 +15,26 @@ __status__ = "Development" import os import sys -try: - from setuptools import setup -except Exception as e: - from distutils.core import setup + +# NOTE: Though setuptool is preferred we use distutils. +# 1. setuptool normalize VERSION even when it is compatible with PyPI +# guidelines. This caused havoc on our OBS build. +from distutils.core import setup # Read version from VERSION created by cmake file. This file must be present for # setup.cmake.py to work perfectly. script_dir = os.path.dirname( os.path.abspath( __file__ ) ) -version = '3.2pre1' +# Version file must be available. It MUST be written by cmake. Or create +# manually. +with open( os.path.join( script_dir, 'VERSION'), 'r' ) as f: + version = f.read( ) +print( 'Got %s from VERSION file' % version ) -try: - with open( os.path.join( script_dir, 'VERSION'), 'r' ) as f: - version = f.read( ) -except Exception as e: - print( 'Failed to read VERSION %s' % e ) - print( 'Using default %s' % version ) +# importlib is available only for python3. +suffix = '.so' try: import importlib.machinery suffix = importlib.machinery.EXTENSION_SUFFIXES[0].split('.')[-1] @@ -46,27 +43,20 @@ except Exception as e: suffix = '.so' setup( - name='pymoose', - version=version, - description='Python scripting interface of MOOSE Simulator (https://moose.ncbs.res.in)', - author='MOOSERes', - author_email='bhalla@ncbs.res.in', - maintainer='Dilawar Singh', - maintainer_email='dilawars@ncbs.res.in', - url='http://moose.ncbs.res.in', - packages=[ - 'rdesigneur' - , 'moose' - , 'moose.SBML' - , 'moose.neuroml' - , 'moose.neuroml2' - , 'moose.genesis' - , 'moose.chemUtil' - , 'moose.chemMerge' - ], - install_requires = [ 'python-libsbml', 'numpy' ], - package_dir = { - 'moose' : 'moose', 'rdesigneur' : 'rdesigneur' - }, - package_data = { 'moose' : ['_moose' + suffix, 'neuroml2/schema/NeuroMLCoreDimensions.xml'] }, - ) + name = 'pymoose', + version = version, + description = 'Python scripting interface of MOOSE Simulator (https://moose.ncbs.res.in)', + author = 'MOOSERes', + author_email = 'bhalla@ncbs.res.in', + maintainer = 'Dilawar Singh', + maintainer_email = 'dilawars@ncbs.res.in', + url = 'http://moose.ncbs.res.in', + packages = [ 'rdesigneur', 'moose' + , 'moose.SBML', 'moose.genesis' + , 'moose.neuroml', 'moose.neuroml2' + , 'moose.chemUtil', 'moose.chemMerge' + ], + install_requires = [ 'python-libsbml', 'numpy' ], + package_dir = { 'moose' : 'moose', 'rdesigneur' : 'rdesigneur' }, + package_data = { 'moose' : ['_moose' + suffix, 'neuroml2/schema/NeuroMLCoreDimensions.xml'] }, + ) diff --git a/moose-core/setup.py b/moose-core/setup.py index f7eec4a35346b44bb6c2a30ccf08369c151cfbe2..4d9d8284a8bc92b5d871bfc82fa0e034d60a238e 100755 --- a/moose-core/setup.py +++ b/moose-core/setup.py @@ -1,6 +1,8 @@ # -*- coding: utf-8 -*- +from __future__ import print_function """setup.py: This +NOT COMPLETE. scripts prepare MOOSE for PyPI. Last modified: Mon Jul 28, 2014 12:52AM