From d07f7ea6c3357b98b62e1abe9d133be39a797de8 Mon Sep 17 00:00:00 2001
From: Dilawar Singh <dilawars@ncbs.res.in>
Date: Sat, 1 Jul 2017 16:26:23 +0530
Subject: [PATCH] Squashed 'moose-examples/' changes from 7ab9e3c..6e8a629

6e8a629 Merge branch 'master' of github.com:BhallaLab/moose-examples
d4e4fb0 Increased timeout to 60 sec.
b4ca7ef Merge branch 'master' of github.com:BhallaLab/moose-examples
2628bfb Potential fix to travis-ci/travis-ci#6307.
56c2805 Argument 1 to run_script is optional, by default its value is 60 secs.
24c45c2 Increased timeout to 60 sec.
c4395a4 Using ruby2.2 for jekyll on travis build.
8917843 Removed wait statement after parallel section.
f75bf0c Install travis using gem2.2
1a62999 Merge branch 'master' of github.com:BhallaLab/moose-examples
3f7399f Added colors in script itself. Download and test travis is called from .travis.yml now. At the end of test print summary of models. Fixed typo in bash-function. Passes on local machine.
516885b Fixed typo in bash-function.
ed06ca1 At the end of test print summary of models.
6778aed Download and test travis is called from .travis.yml now.
bf1cae8 Added colors in script itself.
2abbc43 Timeout with 3 minuts.
6316728 Added script to test genesis scripts.
9127f4f Testing deploy again with changes to config file.
416f650 If travis fails to generate static page, do not consider it as build failure. Update to travis script.
4715089 pip install python-networkx to pip install networkx.

git-subtree-dir: moose-examples
git-subtree-split: 6e8a629e31d05bc2c98ce817e7fcde8fd0d5c2cd
---
 .travis.yml                       |   10 +-
 _travis/BLACKLISTED               | 1999 +++++++----------------------
 _travis/BROKEN                    |   15 +
 _travis/FAILED                    |   44 -
 _travis/GUISCRIPTS                |   40 +-
 _travis/INTERACTIVE               |   16 +-
 _travis/SUCCEEDED                 |   96 +-
 _travis/TORUN                     |  246 ++--
 _travis/__temp__                  |    7 +-
 _travis/deploy_gh_pages.py        |    7 +-
 _travis/download_and_run_doqcs.sh |   83 ++
 _travis/index.md                  |    1 +
 _travis/run_scripts.sh            |   10 +-
 13 files changed, 756 insertions(+), 1818 deletions(-)
 delete mode 100644 _travis/FAILED
 create mode 100755 _travis/download_and_run_doqcs.sh

diff --git a/.travis.yml b/.travis.yml
index d2c79591..6669982c 100644
--- a/.travis.yml
+++ b/.travis.yml
@@ -2,6 +2,10 @@ dist : trusty
 sudo : required 
 group : edge
 
+language: ruby
+rvm:
+    - 2.2
+
 notifications:
     email:
         recipients:
@@ -19,15 +23,18 @@ install:
     - sudo apt-get -y --force-yes install python-qt4 python-pip graphviz
     - sudo apt-get -y --force-yes install python-h5py python-scipy python-pygraphviz
     - sudo apt-get -y --force-yes install moose 
-    - sudo pip install python-libsbml python-networkx
+    - sudo pip install python-libsbml networkx
+    - gem install travis
 
 script:
+    - nvm use stable
     - # Making sure no python3 incompatible file.
     - python3 -m compileall -q .
     - python2 -m compileall -q .
     - /usr/bin/python -c 'import moose'
     - /usr/bin/python -c 'import moogli'
     - cd _travis && ./find_scripts_to_run.sh && ./run_scripts.sh 
+    - cd _travis && ./download_and_run_doqcs.sh
 
 exclude : [vendor]
 
@@ -35,7 +42,6 @@ deploy:
     provider : pages
     skip_cleanup : true
     github_token : $GHI_TOKEN
-    local_dir : _travis/_site
     on:
         branch : master
 
diff --git a/_travis/BLACKLISTED b/_travis/BLACKLISTED
index 212f84d3..c152d9cc 100644
--- a/_travis/BLACKLISTED
+++ b/_travis/BLACKLISTED
@@ -1,799 +1,225 @@
-- [ ] ./../snippets/recurrentIntFire.py
-
-`i``
-  1 7 7
-  1 1
-  1 6 6
-  <moose.ZombieReac: id=476, dataIndex=0, path=/model[0]/kinetics[0]/endo[0]>
-  <moose.ZombieReac: id=474, dataIndex=0, path=/model[0]/compartment_1[0]/exo[0]>
-  Elements under /model[0]/compartment_1[0]
-  /model[0]/compartment_1[0]/mesh
-  /model[0]/compartment_1[0]/P
-  /model[0]/compartment_1[0]/M
-  /model[0]/compartment_1[0]/M_p
-  /model[0]/compartment_1[0]/basal
-  /model[0]/compartment_1[0]/exo
-  /model[0]/compartment_1[0]/stoich
-  /model[0]/compartment_1[0]/ksolve
-```
-- [ ] ./../snippets/switchKineticSolvers.py
-
-`i``
-  [ 0.  0.]
-  106384558.575
-  7-06-27T10:40:46.203398
-  World: current time: 2017-06-27T10:40:46.203604
-  Init <moose.PyRun: id=468, dataIndex=0, path=/model[0]/Hello[0]>
-  Running Hello
-  Hello count = 0
-  Init World
-  Running World
-  World count = 0
-  Running Hello
-  Hello count = 1
-  Running World
-  World count = 1
-  Running Hello
-  Hello count = 2
-  Running World
-  World count = 2
-  Running Hello
-  Hello count = 3
-  Running World
-  World count = 3
-  Running Hello
-  Hello count = 4
-  Running World
-  World count = 4
-  Running Hello
-  Hello count = 5
-  Running World
-  World count = 5
-  Running Hello
-  Hello count = 6
-  Running World
-  World count = 6
-  Running Hello
-  Hello count = 7
-  Running World
-  World count = 7
-  Running Hello
-  Hello count = 8
-  Running World
-  World count = 8
-  Running Hello
-  Hello count = 9
-  Running World
-  World count = 9
-  Running Hello
-  Hello count = 10
-  Running World
-  World count = 10
-  Running Hello
-  Hello count = 11
-  Running World
-  World count = 11
-  Running Hello
-  Hello count = 12
-  Running World
-  World count = 12
-  Running Hello
-  Hello count = 13
-  Running World
-  World count = 13
-  Running Hello
-  Hello count = 14
-  Running World
-  World count = 14
-  Running Hello
-  Hello count = 15
-  Running World
-  World count = 15
-  Running Hello
-  Hello count = 16
-  Running World
-  World count = 16
-  Running Hello
-  Hello count = 17
-  Running World
-  World count = 17
-  Running Hello
-  Hello count = 18
-  Running World
-  World count = 18
-  Running Hello
-  Hello count = 19
-  Running World
-  World count = 19
-  Running Hello
-  Hello count = 20
-  Running World
-  World count = 20
-  Init World
-  Running World
-  World count = 0
-  input = 0.0
-  output = 0.0
-  Running World
-  World count = 1
-  input = 0.0
-  output = 0.0
-  Running World
-  World count = 2
-  input = 0.0
-  output = 0.0
-  Running World
-  World count = 3
-  input = 0.0
-  output = 0.0
-  Running World
-  World count = 4
-  input = 1.0
-  output = 1.0
-  Running World
-  World count = 5
-  input = 1.0
-  output = 1.0
-  Running World
-  World count = 6
-  input = 1.0
-  output = 1.0
-  Running World
-  World count = 7
-  input = 1.0
-  output = 1.0
-  Running World
-  World count = 8
-  input = 2.0
-  output = 4.0
-  Running World
-  World count = 9
-  input = 2.0
-  output = 4.0
-  Running World
-  World count = 10
-  input = 2.0
-  output = 4.0
-  Running World
-  World count = 11
-  input = 2.0
-  output = 4.0
-  Running World
-  World count = 12
-  input = 3.0
-  output = 9.0
-  Running World
-  World count = 13
-  input = 3.0
-  output = 9.0
-  Running World
-  World count = 14
-  input = 3.0
-  output = 9.0
-  Running World
-  World count = 15
-  input = 3.0
-  output = 9.0
-  Running World
-  World count = 16
-  input = 0.0
-  output = 0.0
-  Running World
-  World count = 17
-  input = 0.0
-  output = 0.0
-  Running World
-  World count = 18
-  input = 0.0
-  output = 0.0
-  Running World
-  World count = 19
-  input = 0.0
-  output = 0.0
-  Running World
-  World count = 20
-  input = 1.0
-  output = 1.0
-  Running World
-  World count = 21
-  input = 1.0
-  output = 1.0
-  Running World
-  World count = 22
-  input = 1.0
-  output = 1.0
-  Running World
-  World count = 23
-  input = 1.0
-  output = 1.0
-  Running World
-  World count = 24
-  input = 2.0
-  output = 4.0
-  Running World
-  World count = 25
-  input = 2.0
-  output = 4.0
-  Running World
-  World count = 26
-  input = 2.0
-  output = 4.0
-  Running World
-  World count = 27
-  input = 2.0
-  output = 4.0
-  Running World
-  World count = 28
-  input = 3.0
-  output = 9.0
-  Running World
-  World count = 29
-  input = 3.0
-  output = 9.0
-  Running World
-  World count = 30
-  input = 3.0
-  output = 9.0
-  Running World
-  World count = 31
-  input = 3.0
-  output = 9.0
-  Running World
-  World count = 32
-  input = 0.0
-  output = 0.0
-  Running World
-  World count = 33
-  input = 0.0
-  output = 0.0
-  Running World
-  World count = 34
-  input = 0.0
-  output = 0.0
-  Running World
-  World count = 35
-  input = 0.0
-  output = 0.0
-  Running World
-  World count = 36
-  input = 1.0
-  output = 1.0
-  Running World
-  World count = 37
-  input = 1.0
-  output = 1.0
-  Running World
-  World count = 38
-  input = 1.0
-  output = 1.0
-  Running World
-  World count = 39
-  input = 1.0
-  output = 1.0
-  Running World
-  World count = 40
-  input = 2.0
-  output = 4.0
-```
-- [ ] ./../snippets/twocells.py
-
-`i``
-    [ 0.  0.]
-    106384558.575
-    7-06-27T10:40:46.203398
-    World: current time: 2017-06-27T10:40:46.203604
-    Init <moose.PyRun: id=468, dataIndex=0, path=/model[0]/Hello[0]>
-    Running Hello
-    Hello count = 0
-    Init World
-    Running World
-    World count = 0
-    Running Hello
-    Hello count = 1
-    Running World
-    World count = 1
-    Running Hello
-    Hello count = 2
-    Running World
-    World count = 2
-    Running Hello
-    Hello count = 3
-    Running World
-    World count = 3
-    Running Hello
-    Hello count = 4
-    Running World
-    World count = 4
-    Running Hello
-    Hello count = 5
-    Running World
-    World count = 5
-    Running Hello
-    Hello count = 6
-    Running World
-    World count = 6
-    Running Hello
-    Hello count = 7
-    Running World
-    World count = 7
-    Running Hello
-    Hello count = 8
-    Running World
-    World count = 8
-    Running Hello
-    Hello count = 9
-    Running World
-    World count = 9
-    Running Hello
-    Hello count = 10
-    Running World
-    World count = 10
-    Running Hello
-    Hello count = 11
-    Running World
-    World count = 11
-    Running Hello
-    Hello count = 12
-    Running World
-    World count = 12
-    Running Hello
-    Hello count = 13
-    Running World
-    World count = 13
-    Running Hello
-    Hello count = 14
-    Running World
-    World count = 14
-    Running Hello
-    Hello count = 15
-    Running World
-    World count = 15
-    Running Hello
-    Hello count = 16
-    Running World
-    World count = 16
-    Running Hello
-    Hello count = 17
-    Running World
-    World count = 17
-    Running Hello
-    Hello count = 18
-    Running World
-    World count = 18
-    Running Hello
-    Hello count = 19
-    Running World
-    World count = 19
-    Running Hello
-    Hello count = 20
-    Running World
-    World count = 20
-    Init World
-    Running World
-    World count = 0
-    input = 0.0
-    output = 0.0
-    Running World
-    World count = 1
-    input = 0.0
-    output = 0.0
-    Running World
-    World count = 2
-    input = 0.0
-    output = 0.0
-    Running World
-    World count = 3
-    input = 0.0
-    output = 0.0
-    Running World
-    World count = 4
-    input = 1.0
-    output = 1.0
-    Running World
-    World count = 5
-    input = 1.0
-    output = 1.0
-    Running World
-    World count = 6
-    input = 1.0
-    output = 1.0
-    Running World
-    World count = 7
-    input = 1.0
-    output = 1.0
-    Running World
-    World count = 8
-    input = 2.0
-    output = 4.0
-    Running World
-    World count = 9
-    input = 2.0
-    output = 4.0
-    Running World
-    World count = 10
-    input = 2.0
-    output = 4.0
-    Running World
-    World count = 11
-    input = 2.0
-    output = 4.0
-    Running World
-    World count = 12
-    input = 3.0
-    output = 9.0
-    Running World
-    World count = 13
-    input = 3.0
-    output = 9.0
-    Running World
-    World count = 14
-    input = 3.0
-    output = 9.0
-    Running World
-    World count = 15
-    input = 3.0
-    output = 9.0
-    Running World
-    World count = 16
-    input = 0.0
-    output = 0.0
-    Running World
-    World count = 17
-    input = 0.0
-    output = 0.0
-    Running World
-    World count = 18
-    input = 0.0
-    output = 0.0
-    Running World
-    World count = 19
-    input = 0.0
-    output = 0.0
-    Running World
-    World count = 20
-    input = 1.0
-    output = 1.0
-    Running World
-    World count = 21
-    input = 1.0
-    output = 1.0
-    Running World
-    World count = 22
-    input = 1.0
-    output = 1.0
-    Running World
-    World count = 23
-    input = 1.0
-    output = 1.0
-    Running World
-    World count = 24
-    input = 2.0
-    output = 4.0
-    Running World
-    World count = 25
-    input = 2.0
-    output = 4.0
-    Running World
-    World count = 26
-    input = 2.0
-    output = 4.0
-    Running World
-    World count = 27
-    input = 2.0
-    output = 4.0
-    Running World
-    World count = 28
-    input = 3.0
-    output = 9.0
-    Running World
-    World count = 29
-    input = 3.0
-    output = 9.0
-    Running World
-    World count = 30
-    input = 3.0
-    output = 9.0
-    Running World
-    World count = 31
-    input = 3.0
-    output = 9.0
-    Running World
-    World count = 32
-    input = 0.0
-    output = 0.0
-    Running World
-    World count = 33
-    input = 0.0
-    output = 0.0
-    Running World
-    World count = 34
-    input = 0.0
-    output = 0.0
-    Running World
-    World count = 35
-    input = 0.0
-    output = 0.0
-    Running World
-    World count = 36
-    input = 1.0
-    output = 1.0
-    Running World
-    World count = 37
-    input = 1.0
-    output = 1.0
-    Running World
-    World count = 38
-    input = 1.0
-    output = 1.0
-    Running World
-    World count = 39
-    input = 1.0
-    output = 1.0
-    Running World
-    World count = 40
-    input = 2.0
-    output = 4.0
-```
-- [ ] ./../snippets/stimtable.py
-
-`i``
-```
-- [ ] ./../snippets/function.py
-
-`i``
-  0.1
-  ('dt = ', 0.1, ', Total simulation time = ', 10.0)
-  ('Running simulation for', 10.0, 'seconds')
-  ('Simulator time:', 10.0)
-  9
-  ('Simulator time at end of simulation', 40.0)
-  omp')
-  Elements on tick 1
-  (' ->', '/comp')
-  ('/comp[0]/chan[0]', 'has been scheduled')
-  Elements on tick 1
-  (' ->', '/comp')
-  (' ->', '/comp[0]/chan')
-  ('Ticks connected to `process` method of', '/comp[0]')
-  (' ->', '/clock')
-```
-- [ ] ./../snippets/pulsegen2.py
-
-`i``
-    0.1
-    ('dt = ', 0.1, ', Total simulation time = ', 10.0)
-    ('Running simulation for', 10.0, 'seconds')
-    ('Simulator time:', 10.0)
-    9
-    ('Simulator time at end of simulation', 40.0)
-    omp')
-    Elements on tick 1
-    (' ->', '/comp')
-    ('/comp[0]/chan[0]', 'has been scheduled')
-    Elements on tick 1
-    (' ->', '/comp')
-    (' ->', '/comp[0]/chan')
-    ('Ticks connected to `process` method of', '/comp[0]')
-    (' ->', '/clock')
-```
-- [ ] ./../snippets/gssaCylinderDiffusion.py
-
-`i``
-```
-- [ ] ./../snippets/findChemSteadyState.py
-
-`i``
-  
-  
-  Totals:	2.98096e+08	6.02214e+06	
-  > /net1[0]/sh[0]/synapse[0].addSpike
-  	--> /net1[0]/sh[2]/synapse[0].addSpike
-  	--> /net1[0]/sh[3]/synapse[0].addSpike
-  	--> /net1[0]/sh[5]/synapse[0].addSpike
-  	--> /net1[0]/sh[6]/synapse[0].addSpike
-  	--> /net1[0]/sh[8]/synapse[0].addSpike
-  	--> /net1[0]/sh[9]/synapse[0].addSpike
-  Messages from /net1[1].spikeOut
-  	--> /net1[0]/sh[0]/synapse[1].addSpike
-  	--> /net1[0]/sh[1]/synapse[0].addSpike
-  	--> /net1[0]/sh[3]/synapse[1].addSpike
-  	--> /net1[0]/sh[6]/synapse[1].addSpike
-  	--> /net1[0]/sh[7]/synapse[0].addSpike
-  Messages from /net1[2].spikeOut
-  	--> /net1[0]/sh[3]/synapse[2].addSpike
-  	--> /net1[0]/sh[4]/synapse[0].addSpike
-  	--> /net1[0]/sh[5]/synapse[1].addSpike
-  	--> /net1[0]/sh[6]/synapse[2].addSpike
-  	--> /net1[0]/sh[7]/synapse[1].addSpike
-  Messages from /net1[3].spikeOut
-  	--> /net1[0]/sh[1]/synapse[1].addSpike
-  	--> /net1[0]/sh[3]/synapse[3].addSpike
-  	--> /net1[0]/sh[4]/synapse[1].addSpike
-  	--> /net1[0]/sh[9]/synapse[1].addSpike
-  Messages from /net1[4].spikeOut
-  	--> /net1[0]/sh[0]/synapse[2].addSpike
-  	--> /net1[0]/sh[2]/synapse[1].addSpike
-  	--> /net1[0]/sh[3]/synapse[4].addSpike
-  	--> /net1[0]/sh[4]/synapse[2].addSpike
-  	--> /net1[0]/sh[9]/synapse[2].addSpike
-  Messages from /net1[5].spikeOut
-  	--> /net1[0]/sh[0]/synapse[3].addSpike
-  	--> /net1[0]/sh[1]/synapse[2].addSpike
-  	--> /net1[0]/sh[2]/synapse[2].addSpike
-  	--> /net1[0]/sh[4]/synapse[3].addSpike
-  	--> /net1[0]/sh[8]/synapse[1].addSpike
-  	--> /net1[0]/sh[9]/synapse[3].addSpike
-  Messages from /net1[6].spikeOut
-  	--> /net1[0]/sh[1]/synapse[3].addSpike
-  	--> /net1[0]/sh[2]/synapse[3].addSpike
-  	--> /net1[0]/sh[4]/synapse[4].addSpike
-  Messages from /net1[7].spikeOut
-  	--> /net1[0]/sh[5]/synapse[2].addSpike
-  	--> /net1[0]/sh[9]/synapse[4].addSpike
-  Messages from /net1[8].spikeOut
-  	--> /net1[0]/sh[0]/synapse[4].addSpike
-  	--> /net1[0]/sh[1]/synapse[4].addSpike
-  	--> /net1[0]/sh[4]/synapse[5].addSpike
-  	--> /net1[0]/sh[5]/synapse[3].addSpike
-  	--> /net1[0]/sh[6]/synapse[3].addSpike
-  	--> /net1[0]/sh[8]/synapse[2].addSpike
-  Messages from /net1[9].spikeOut
-  	--> /net1[0]/sh[0]/synapse[5].addSpike
-  	--> /net1[0]/sh[2]/synapse[4].addSpike
-  	--> /net1[0]/sh[3]/synapse[5].addSpike
-  	--> /net1[0]/sh[7]/synapse[2].addSpike
-```
-- [ ] ./../snippets/GraupnerBrunel2012_STDPfromCaPlasticity.py
-
-`i``
-    
-    
-    Totals:	2.98096e+08	6.02214e+06	
-    > /net1[0]/sh[0]/synapse[0].addSpike
-    	--> /net1[0]/sh[2]/synapse[0].addSpike
-    	--> /net1[0]/sh[3]/synapse[0].addSpike
-    	--> /net1[0]/sh[5]/synapse[0].addSpike
-    	--> /net1[0]/sh[6]/synapse[0].addSpike
-    	--> /net1[0]/sh[8]/synapse[0].addSpike
-    	--> /net1[0]/sh[9]/synapse[0].addSpike
-    Messages from /net1[1].spikeOut
-    	--> /net1[0]/sh[0]/synapse[1].addSpike
-    	--> /net1[0]/sh[1]/synapse[0].addSpike
-    	--> /net1[0]/sh[3]/synapse[1].addSpike
-    	--> /net1[0]/sh[6]/synapse[1].addSpike
-    	--> /net1[0]/sh[7]/synapse[0].addSpike
-    Messages from /net1[2].spikeOut
-    	--> /net1[0]/sh[3]/synapse[2].addSpike
-    	--> /net1[0]/sh[4]/synapse[0].addSpike
-    	--> /net1[0]/sh[5]/synapse[1].addSpike
-    	--> /net1[0]/sh[6]/synapse[2].addSpike
-    	--> /net1[0]/sh[7]/synapse[1].addSpike
-    Messages from /net1[3].spikeOut
-    	--> /net1[0]/sh[1]/synapse[1].addSpike
-    	--> /net1[0]/sh[3]/synapse[3].addSpike
-    	--> /net1[0]/sh[4]/synapse[1].addSpike
-    	--> /net1[0]/sh[9]/synapse[1].addSpike
-    Messages from /net1[4].spikeOut
-    	--> /net1[0]/sh[0]/synapse[2].addSpike
-    	--> /net1[0]/sh[2]/synapse[1].addSpike
-    	--> /net1[0]/sh[3]/synapse[4].addSpike
-    	--> /net1[0]/sh[4]/synapse[2].addSpike
-    	--> /net1[0]/sh[9]/synapse[2].addSpike
-    Messages from /net1[5].spikeOut
-    	--> /net1[0]/sh[0]/synapse[3].addSpike
-    	--> /net1[0]/sh[1]/synapse[2].addSpike
-    	--> /net1[0]/sh[2]/synapse[2].addSpike
-    	--> /net1[0]/sh[4]/synapse[3].addSpike
-    	--> /net1[0]/sh[8]/synapse[1].addSpike
-    	--> /net1[0]/sh[9]/synapse[3].addSpike
-    Messages from /net1[6].spikeOut
-    	--> /net1[0]/sh[1]/synapse[3].addSpike
-    	--> /net1[0]/sh[2]/synapse[3].addSpike
-    	--> /net1[0]/sh[4]/synapse[4].addSpike
-    Messages from /net1[7].spikeOut
-    	--> /net1[0]/sh[5]/synapse[2].addSpike
-    	--> /net1[0]/sh[9]/synapse[4].addSpike
-    Messages from /net1[8].spikeOut
-    	--> /net1[0]/sh[0]/synapse[4].addSpike
-    	--> /net1[0]/sh[1]/synapse[4].addSpike
-    	--> /net1[0]/sh[4]/synapse[5].addSpike
-    	--> /net1[0]/sh[5]/synapse[3].addSpike
-    	--> /net1[0]/sh[6]/synapse[3].addSpike
-    	--> /net1[0]/sh[8]/synapse[2].addSpike
-    Messages from /net1[9].spikeOut
-    	--> /net1[0]/sh[0]/synapse[5].addSpike
-    	--> /net1[0]/sh[2]/synapse[4].addSpike
-    	--> /net1[0]/sh[3]/synapse[5].addSpike
-    	--> /net1[0]/sh[7]/synapse[2].addSpike
-```
-- [ ] ./../snippets/traub_naf.py
-
-`i``
-  No parallel ksolve
-```
-- [ ] ./../snippets/hhcomp.py
+- [ ] ./../cuda/testHsolve.py
 
 `i``
-    No parallel ksolve
+  moose.nml.neuroml: INFO     Loading neuroml file CA1soma.net.xml 
+  moose.nml.neuroml: INFO     Loading neuroml file CA1soma.net.xml 
+  moose.nml.neuroml: INFO     Using default temperature of 32.0 degree Celsius
+  moose.nml.neuroml: INFO     Using default temperature of 32.0 degree Celsius
+  moose.nml.networkml: INFO     Creating population CA1group of cell type CA1soma
+  moose.nml.networkml: INFO     Creating population CA1group of cell type CA1soma
+  moose.nml.networkml: INFO     Creating input under /elec 
+  moose.nml.networkml: INFO     Creating input under /elec 
+  Reinit MOOSE ... 
+  Solver: ee
+  Using exp euler
+  Using exp euler
+  Running ... 
+  Showing plots ...
 ```
-- [ ] ./../snippets/recurrentLIF.py
+- [ ] ./../kinetics/test_ksolve.py
 
 `i``
-  Elements under /model[0]/compartment[0]
-  /model[0]/compartment[0]/mesh
+    moose.nml.neuroml: INFO     Loading neuroml file CA1soma.net.xml 
+    moose.nml.neuroml: INFO     Loading neuroml file CA1soma.net.xml 
+    moose.nml.neuroml: INFO     Using default temperature of 32.0 degree Celsius
+    moose.nml.neuroml: INFO     Using default temperature of 32.0 degree Celsius
+    moose.nml.networkml: INFO     Creating population CA1group of cell type CA1soma
+    moose.nml.networkml: INFO     Creating population CA1group of cell type CA1soma
+    moose.nml.networkml: INFO     Creating input under /elec 
+    moose.nml.networkml: INFO     Creating input under /elec 
+    Reinit MOOSE ... 
+    Solver: ee
+    Using exp euler
+    Using exp euler
+    Running ... 
+    Showing plots ...
 ```
-- [ ] ./../snippets/HigginsGraupnerBrunel2014_LifetimeCaPlasticity.py
+- [ ] ./../neuroml/allChannelsCell/allChannelsCell.py
 
 `i``
-    Elements under /model[0]/compartment[0]
-    /model[0]/compartment[0]/mesh
+  Selecting a channel randomly form ['CaT_STG', 'Na_STG', 'CaS_STG', 'H_STG', 'Kd_STG', 'KA_STG']
+  Selected CaT_STG
+  Running for 0
+  Running for 1
+  .nml.networkml: INFO     Creating population AB_PD of cell type AB_PD
+  moose.nml.networkml: INFO     Creating population AB_PD of cell type AB_PD
+  moose.nml.networkml: INFO     Creating population PY of cell type PY
+  moose.nml.networkml: INFO     Creating population PY of cell type PY
+  moose.nml.networkml: INFO     Creating population LP of cell type LP
+  moose.nml.networkml: INFO     Creating population LP of cell type LP
+  moose.nml.networkml: INFO     Setting PD_LP
+  moose.nml.networkml: INFO     Setting PD_LP
+  moose.nml.networkml: INFO     Setting PYReinit MOOSE.
+  Solver: ee
+  Using exp euler
+  Running now...
+  ('Spiketimes :', array([ 0.07185,  0.16435,  0.25685,  0.34935,  0.44185,  0.53435,
+          0.62685,  0.71935,  0.81185,  0.90435,  0.9969 ,  1.0894 ,
+          1.1819 ,  1.2744 ,  1.3669 ,  1.4594 ,  1.5519 ,  1.6444 ,
+          1.7369 ,  1.8294 ,  1.9219 ]))
+  oose.nml.networkml: INFO     Setting LP_ABPD
+  moose.nml.networkml: INFO     Setting LP_ABPD
+  moose.nml.networkml: INFO     Setting PD_PY
+  moose.nml.networkml: INFO     Setting PD_PY
 ```
-- [ ] ./../snippets/multiscaleOneCompt.py
+- [ ] ./../neuroml/lobster_pyloric/STG_net.py
 
 `i``
-  ReadKkit::setMethod: option  not known, using Exponential Euler (ee)
-  Written to file testsave.g
-  True
+    Selecting a channel randomly form ['CaT_STG', 'Na_STG', 'CaS_STG', 'H_STG', 'Kd_STG', 'KA_STG']
+    Selected CaT_STG
+    Running for 0
+    Running for 1
+    .nml.networkml: INFO     Creating population AB_PD of cell type AB_PD
+    moose.nml.networkml: INFO     Creating population AB_PD of cell type AB_PD
+    moose.nml.networkml: INFO     Creating population PY of cell type PY
+    moose.nml.networkml: INFO     Creating population PY of cell type PY
+    moose.nml.networkml: INFO     Creating population LP of cell type LP
+    moose.nml.networkml: INFO     Creating population LP of cell type LP
+    moose.nml.networkml: INFO     Setting PD_LP
+    moose.nml.networkml: INFO     Setting PD_LP
+    moose.nml.networkml: INFO     Setting PYReinit MOOSE.
+    Solver: ee
+    Using exp euler
+    Running now...
+    ('Spiketimes :', array([ 0.07185,  0.16435,  0.25685,  0.34935,  0.44185,  0.53435,
+            0.62685,  0.71935,  0.81185,  0.90435,  0.9969 ,  1.0894 ,
+            1.1819 ,  1.2744 ,  1.3669 ,  1.4594 ,  1.5519 ,  1.6444 ,
+            1.7369 ,  1.8294 ,  1.9219 ]))
+    oose.nml.networkml: INFO     Setting LP_ABPD
+    moose.nml.networkml: INFO     Setting LP_ABPD
+    moose.nml.networkml: INFO     Setting PD_PY
+    moose.nml.networkml: INFO     Setting PD_PY
 ```
-- [ ] ./../unsorted/ksolve_with_heavy_load.py
+- [ ] ./../parallelSolver/Fig2_v4.py
 
 `i``
-  .
-```
-- [ ] ./../traub_2005/py/test_tuftedrs.py
+  tau = 0.004 lambda = 0.000316227766017
+  0
+  -----------------
+  4.9672941329e-10 4.9672941329e-10 0.0 0.0 0.0 0.0 0.0 0.0 
+  0.0 0.0 0.0 0.0 0.0 0.0 4.9672941329e-10 4.9672941329e-10 
+  2
+  -----------------
+  0.0 0.0 4.9672941329e-10 4.9672941329e-10 0.0 0.0 0.0 0.0 
+  0.0 0.0 0.0 0.0 4.9672941329e-10 4.9672941329e-10 0.0 0.0 
+  4
+  -----------------
+  0.0 0.0 0.0 0.0 4.9672941329e-10 4.9672941329e-10 0.0 0.0 
+  0.0 0.0 4.9672941329e-10 4.9672941329e-10 0.0 0.0 0.0 0.0 
+  6
+  -----------------
+  0.0 0.0 0.0 0.0 0.0 0.0 4.9672941329e-10 4.9672941329e-10 
+  4.9672941329e-10 4.9672941329e-10 0.0 0.0 0.0 0.0 0.0 0.0 
+```
+- [ ] ./../traub_2005/py/display_morphology.py
+- [ ] ./../traub_2005/py/dump_f_i_curves.py
+- [ ] ./../traub_2005/py/fig_a2_fs.py
 
 `i``
-    .
-```
-- [ ] ./../traub_2005/py/test_supbasket.py
 
 `i``
-    Traceback (most recent call last):
-      File "display_morphology.py", line 52, in <module>
-        import networkx as nx
-    ImportError: No module named networkx
-```
-- [ ] ./../traub_2005/py/test_deepbasket.py
 
 `i``
-      Traceback (most recent call last):
-        File "display_morphology.py", line 52, in <module>
-          import networkx as nx
-      ImportError: No module named networkx
+    ('data_dir =', '/tmp/traub2005_data/2017_06_29')
+    ReadCell: 74 compartments, 772 channels, 69 others
+    ReadCell: 74 compartments, 772 channels, 69 others
+    ReadCell: 59 compartments, 501 channels, 54 others
+    ReadCell: 59 compartments, 283 channels, 54 others
+    ReadCell: 59 compartments, 283 channels, 54 others
+    ReadCell: 59 compartments, 539 channels, 54 others
+    ReadCell: 50 compartments, 448 channels, 45 others
+    ReadCell: 61 compartments, 594 channels, 56 others
+    ReadCell: 61 compartments, 594 channels, 56 others
+    ReadCell: 59 compartments, 501 channels, 54 others
+    ReadCell: 59 compartments, 283 channels, 54 others
+    ReadCell: 59 compartments, 283 channels, 54 others
+    ReadCell: 137 compartments, 1345 channels, 132 others
+    ReadCell: 59 compartments, 607 channels, 54 others
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]'.
+    _0[0]/SpinyStellate_0[0]'.
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_0[0]/DeepBasket_0[0]'.
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_0[0]/DeepLTS_0[0]'.
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_1[0]/SpinyStellate_1[0]'.
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_1[0]/DeepBasket_1[0]'.
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_1[0]/DeepLTS_1[0]'.
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_2[0]/SpinyStellate_2[0]'.
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_2[0]/DeepBasket_2[0]'.
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_2[0]/DeepLTS_2[0]'.
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_3[0]/SpinyStellate_3[0]'.
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_3[0]/DeepBasket_3[0]'.
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_3[0]/DeepLTS_3[0]'.
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_4[0]/SpinyStellate_4[0]'.
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_4[0]/DeepBasket_4[0]'.
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_4[0]/DeepLTS_4[0]'.
+    ('data_dir =', '/tmp/traub2005_data/2017_06_29')
+    ReadCell: 74 compartments, 772 channels, 69 others
+    ReadCell: 74 compartments, 772 channels, 69 others
+    ReadCell: 59 compartments, 501 channels, 54 others
+    ReadCell: 59 compartments, 283 channels, 54 others
+    ReadCell: 59 compartments, 283 channels, 54 others
+    ReadCell: 59 compartments, 539 channels, 54 others
+    ReadCell: 50 compartments, 448 channels, 45 others
+    ReadCell: 61 compartments, 594 channels, 56 others
+    ReadCell: 61 compartments, 594 channels, 56 others
+    ReadCell: 59 compartments, 501 channels, 54 others
+    ReadCell: 59 compartments, 283 channels, 54 others
+    ReadCell: 59 compartments, 283 channels, 54 others
+    ReadCell: 137 compartments, 1345 channels, 132 others
+    ReadCell: 59 compartments, 607 channels, 54 others
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]'.
+    _0[0]/SpinyStellate_0[0]'.
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_0[0]/DeepBasket_0[0]'.
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_0[0]/DeepLTS_0[0]'.
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_1[0]/SpinyStellate_1[0]'.
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_1[0]/DeepBasket_1[0]'.
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_1[0]/DeepLTS_1[0]'.
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_2[0]/SpinyStellate_2[0]'.
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_2[0]/DeepBasket_2[0]'.
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_2[0]/DeepLTS_2[0]'.
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_3[0]/SpinyStellate_3[0]'.
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_3[0]/DeepBasket_3[0]'.
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_3[0]/DeepLTS_3[0]'.
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_4[0]/SpinyStellate_4[0]'.
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_4[0]/DeepBasket_4[0]'.
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_4[0]/DeepLTS_4[0]'.
+```
+```
+    ('data_dir =', '/tmp/traub2005_data/2017_06_29')
+    ReadCell: 74 compartments, 772 channels, 69 others
+    ReadCell: 74 compartments, 772 channels, 69 others
+    ReadCell: 59 compartments, 501 channels, 54 others
+    ReadCell: 59 compartments, 283 channels, 54 others
+    ReadCell: 59 compartments, 283 channels, 54 others
+    ReadCell: 59 compartments, 539 channels, 54 others
+    ReadCell: 50 compartments, 448 channels, 45 others
+    ReadCell: 61 compartments, 594 channels, 56 others
+    ReadCell: 61 compartments, 594 channels, 56 others
+    ReadCell: 59 compartments, 501 channels, 54 others
+    ReadCell: 59 compartments, 283 channels, 54 others
+    ReadCell: 59 compartments, 283 channels, 54 others
+    ReadCell: 137 compartments, 1345 channels, 132 others
+    ReadCell: 59 compartments, 607 channels, 54 others
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]'.
+    _0[0]/SpinyStellate_0[0]'.
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_0[0]/DeepBasket_0[0]'.
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_0[0]/DeepLTS_0[0]'.
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_1[0]/SpinyStellate_1[0]'.
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_1[0]/DeepBasket_1[0]'.
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_1[0]/DeepLTS_1[0]'.
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_2[0]/SpinyStellate_2[0]'.
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_2[0]/DeepBasket_2[0]'.
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_2[0]/DeepLTS_2[0]'.
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_3[0]/SpinyStellate_3[0]'.
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_3[0]/DeepBasket_3[0]'.
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_3[0]/DeepLTS_3[0]'.
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_4[0]/SpinyStellate_4[0]'.
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_4[0]/DeepBasket_4[0]'.
+    Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_4[0]/DeepLTS_4[0]'.
 ```
 - [ ] ./../traub_2005/py/fig_a3.py
 
 `i``
-        Traceback (most recent call last):
-          File "display_morphology.py", line 52, in <module>
-            import networkx as nx
-        ImportError: No module named networkx
-```
-- [ ] ./../traub_2005/py/fig_a2_fs.py
-
-`i``
-  .'data_dir =', '/tmp/traub2005_data/2017_06_27')
-  ReadCell: 74 compartments, 772 channels, 69 others
-  ReadCell: 74 compartments, 772 channels, 69 others
-  ReadCell: 59 compartments, 501 channels, 54 others
-  ReadCell: 59 compartments, 283 channels, 54 others
-  ReadCell: 59 compartments, 283 channels, 54 others
-  ReadCell: 59 compartments, 539 channels, 54 others
-  ReadCell: 50 compartments, 448 channels, 45 others
-  ReadCell: 61 compartments, 594 channels, 56 others
-  ReadCell: 61 compartments, 594 channels, 56 others
-  ReadCell: 59 compartments, 501 channels, 54 others
-  ReadCell: 59 compartments, 283 channels, 54 others
-  ReadCell: 59 compartments, 283 channels, 54 others
-  ReadCell: 137 compartments, 1345 channels, 132 others
-  ReadCell: 59 compartments, 607 channels, 54 others
-  Warning: HSolve::setPath(): No compartments found at or below '/model[0]/deepbasket[0]'.
-```
-- [ ] ./../traub_2005/py/test_suppyrfrb.py
-- [ ] ./../traub_2005/py/test_suppyrrs.py
-
-`i``
-      .'data_dir =', '/tmp/traub2005_data/2017_06_27')
+      ('data_dir =', '/tmp/traub2005_data/2017_06_29')
       ReadCell: 74 compartments, 772 channels, 69 others
       ReadCell: 74 compartments, 772 channels, 69 others
       ReadCell: 59 compartments, 501 channels, 54 others
@@ -808,155 +234,193 @@
       ReadCell: 59 compartments, 283 channels, 54 others
       ReadCell: 137 compartments, 1345 channels, 132 others
       ReadCell: 59 compartments, 607 channels, 54 others
-      Warning: HSolve::setPath(): No compartments found at or below '/model[0]/deepbasket[0]'.
+      Warning: HSolve::setPath(): No compartments found at or below '/model[0]'.
+      _0[0]/SpinyStellate_0[0]'.
+      Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_0[0]/DeepBasket_0[0]'.
+      Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_0[0]/DeepLTS_0[0]'.
+      Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_1[0]/SpinyStellate_1[0]'.
+      Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_1[0]/DeepBasket_1[0]'.
+      Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_1[0]/DeepLTS_1[0]'.
+      Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_2[0]/SpinyStellate_2[0]'.
+      Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_2[0]/DeepBasket_2[0]'.
+      Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_2[0]/DeepLTS_2[0]'.
+      Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_3[0]/SpinyStellate_3[0]'.
+      Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_3[0]/DeepBasket_3[0]'.
+      Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_3[0]/DeepLTS_3[0]'.
+      Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_4[0]/SpinyStellate_4[0]'.
+      Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_4[0]/DeepBasket_4[0]'.
+      Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_4[0]/DeepLTS_4[0]'.
 ```
-- [ ] ./../traub_2005/py/test_tuftedib.py
+- [ ] ./../traub_2005/py/fig_a4c.py
 
 `i``
-      .'data_dir =', '/tmp/traub2005_data/2017_06_27')
-      ReadCell: 74 compartments, 772 channels, 69 others
-      ReadCell: 74 compartments, 772 channels, 69 others
-      ReadCell: 59 compartments, 501 channels, 54 others
-      ReadCell: 59 compartments, 283 channels, 54 others
-      ReadCell: 59 compartments, 283 channels, 54 others
-      ReadCell: 59 compartments, 539 channels, 54 others
-      ReadCell: 50 compartments, 448 channels, 45 others
-      ReadCell: 61 compartments, 594 channels, 56 others
-      ReadCell: 61 compartments, 594 channels, 56 others
-      ReadCell: 59 compartments, 501 channels, 54 others
-      ReadCell: 59 compartments, 283 channels, 54 others
-      ReadCell: 59 compartments, 283 channels, 54 others
-      ReadCell: 137 compartments, 1345 channels, 132 others
-      ReadCell: 59 compartments, 607 channels, 54 others
-      Warning: HSolve::setPath(): No compartments found at or below '/model[0]/deepbasket[0]'.
+  ......
+  ----------------------------------------------------------------------
+  Ran 6 tests in 0.001s
+  
+  OK
+  ('data_dir =', '/tmp/traub2005_data/2017_06_29')
+  ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
+  Elements under /clock[0]
+  ('Starting simulation', 107994510161836698292770853737592796521L, 'for', 0.35, 's')
+  Finished simulation
+  ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
+  ('Saved Vm in', '/tmp/traub2005_data/2017_06_29/CaL_Vm.dat')
+  (1401, 1401)
+  ('Saved Gk in', '/tmp/traub2005_data/2017_06_29/CaL_Gk.dat')
+  ('Saved Ik in', '/tmp/traub2005_data/2017_06_29/CaL_Ik.dat')
+  ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
+  Elements under /clock[0]
+  ('Starting simulation', 113868246900925919479974366892001443855L, 'for', 0.35, 's')
+  Finished simulation
+  ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
+  ('Saved Vm in', '/tmp/traub2005_data/2017_06_29/CaT_Vm.dat')
+  (1401, 1401)
+  ('Saved Gk in', '/tmp/traub2005_data/2017_06_29/CaT_Gk.dat')
+  ('Saved Ik in', '/tmp/traub2005_data/2017_06_29/CaT_Ik.dat')
+  ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
+  Elements under /clock[0]
+  ('Starting simulation', 6968112391088963906305439967133196117L, 'for', 0.35, 's')
+  Finished simulation
+  ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
+  ('Saved Vm in', '/tmp/traub2005_data/2017_06_29/CaT_A_Vm.dat')
+  (1401, 1401)
+  ('Saved Gk in', '/tmp/traub2005_data/2017_06_29/CaT_A_Gk.dat')
+  ('Saved Ik in', '/tmp/traub2005_data/2017_06_29/CaT_A_Ik.dat')
+  [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/CaL_Gk.dat.gz'
+  [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/CaL_Vm.dat.gz'
+  [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/CaT_Gk.dat.gz'
+  [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/CaT_Vm.dat.gz'
+  [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/CaT_A_Gk.dat.gz'
+  [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/CaT_A_Vm.dat.gz'
 ```
+- [ ] ./../traub_2005/py/test_deepaxoaxonic.py
+
+`i``
+  .```
+- [ ] ./../traub_2005/py/test_deeplts.py
+- [ ] ./../traub_2005/py/test_deepbasket.py
 
 `i``
-        .'data_dir =', '/tmp/traub2005_data/2017_06_27')
-        ReadCell: 74 compartments, 772 channels, 69 others
-        ReadCell: 74 compartments, 772 channels, 69 others
-        ReadCell: 59 compartments, 501 channels, 54 others
-        ReadCell: 59 compartments, 283 channels, 54 others
-        ReadCell: 59 compartments, 283 channels, 54 others
-        ReadCell: 59 compartments, 539 channels, 54 others
-        ReadCell: 50 compartments, 448 channels, 45 others
-        ReadCell: 61 compartments, 594 channels, 56 others
-        ReadCell: 61 compartments, 594 channels, 56 others
-        ReadCell: 59 compartments, 501 channels, 54 others
-        ReadCell: 59 compartments, 283 channels, 54 others
-        ReadCell: 59 compartments, 283 channels, 54 others
-        ReadCell: 137 compartments, 1345 channels, 132 others
-        ReadCell: 59 compartments, 607 channels, 54 others
-        Warning: HSolve::setPath(): No compartments found at or below '/model[0]/deepbasket[0]'.
+
+`i``
+- [ ] ./../traub_2005/py/test_hsolve_tcr.py
+    .    .```
 ```
-- [ ] ./../traub_2005/py/test_tcr.py
 
 `i``
-  ('data_dir =', '/tmp/traub2005_data/2017_06_27')
+      .```
+- [ ] ./../traub_2005/py/test_nontuftedrs.py
+- [ ] ./../traub_2005/py/test_nrt.py
+
+`i``
+
+`i``
+  ('data_dir =', '/tmp/traub2005_data/2017_06_29')
   ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
   Elements under /clock[0]
-  ('Starting simulation', 221160974367696030614095733078257065670L, 'for', 0.35, 's')
+  ('Starting simulation', 161960867808673258750941327888061564420L, 'for', 0.35, 's')
   Finished simulation
   ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
-  ('Saved Vm in', '/tmp/traub2005_data/2017_06_27/KDR_Vm.dat')
+  ('Saved Vm in', '/tmp/traub2005_data/2017_06_29/KDR_Vm.dat')
   (1401, 1401)
-  ('Saved Gk in', '/tmp/traub2005_data/2017_06_27/KDR_Gk.dat')
-  ('Saved Ik in', '/tmp/traub2005_data/2017_06_27/KDR_Ik.dat')
+  ('Saved Gk in', '/tmp/traub2005_data/2017_06_29/KDR_Gk.dat')
+  ('Saved Ik in', '/tmp/traub2005_data/2017_06_29/KDR_Ik.dat')
   ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
   Elements under /clock[0]
-  ('Starting simulation', 238598849937293373804186882451093882450L, 'for', 0.35, 's')
+  ('Starting simulation', 139931537324603362871431717753493813398L, 'for', 0.35, 's')
   Finished simulation
   ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
-  ('Saved Vm in', '/tmp/traub2005_data/2017_06_27/KDR_FS_Vm.dat')
+  ('Saved Vm in', '/tmp/traub2005_data/2017_06_29/KDR_FS_Vm.dat')
   (1401, 1401)
-  ('Saved Gk in', '/tmp/traub2005_data/2017_06_27/KDR_FS_Gk.dat')
-  ('Saved Ik in', '/tmp/traub2005_data/2017_06_27/KDR_FS_Ik.dat')
+  ('Saved Gk in', '/tmp/traub2005_data/2017_06_29/KDR_FS_Gk.dat')
+  ('Saved Ik in', '/tmp/traub2005_data/2017_06_29/KDR_FS_Ik.dat')
   ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
   Elements under /clock[0]
-  ('Starting simulation', 255078710148271345867433384651488255421L, 'for', 0.35, 's')
+  ('Starting simulation', 137364228230556122433750901550615303055L, 'for', 0.35, 's')
   Finished simulation
   ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
-  ('Saved Vm in', '/tmp/traub2005_data/2017_06_27/KA_Vm.dat')
+  ('Saved Vm in', '/tmp/traub2005_data/2017_06_29/KA_Vm.dat')
   (1401, 1401)
-  ('Saved Gk in', '/tmp/traub2005_data/2017_06_27/KA_Gk.dat')
-  ('Saved Ik in', '/tmp/traub2005_data/2017_06_27/KA_Ik.dat')
+  ('Saved Gk in', '/tmp/traub2005_data/2017_06_29/KA_Gk.dat')
+  ('Saved Ik in', '/tmp/traub2005_data/2017_06_29/KA_Ik.dat')
   ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
   Elements under /clock[0]
-  ('Starting simulation', 289535226617074381573672567763395314604L, 'for', 0.35, 's')
+  ('Starting simulation', 187414707464618056364930354075464769989L, 'for', 0.35, 's')
   Finished simulation
   ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
-  ('Saved Vm in', '/tmp/traub2005_data/2017_06_27/KA_IB_Vm.dat')
+  ('Saved Vm in', '/tmp/traub2005_data/2017_06_29/KA_IB_Vm.dat')
   (1401, 1401)
-  ('Saved Gk in', '/tmp/traub2005_data/2017_06_27/KA_IB_Gk.dat')
-  ('Saved Ik in', '/tmp/traub2005_data/2017_06_27/KA_IB_Ik.dat')
+  ('Saved Gk in', '/tmp/traub2005_data/2017_06_29/KA_IB_Gk.dat')
+  ('Saved Ik in', '/tmp/traub2005_data/2017_06_29/KA_IB_Ik.dat')
   ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
   Elements under /clock[0]
-  ('Starting simulation', 41672354994817370858545542288716004975L, 'for', 0.35, 's')
+  ('Starting simulation', 328843709217768268196843393005840550745L, 'for', 0.35, 's')
   Finished simulation
   ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
-  ('Saved Vm in', '/tmp/traub2005_data/2017_06_27/K2_Vm.dat')
+  ('Saved Vm in', '/tmp/traub2005_data/2017_06_29/K2_Vm.dat')
   (1401, 1401)
-  ('Saved Gk in', '/tmp/traub2005_data/2017_06_27/K2_Gk.dat')
-  ('Saved Ik in', '/tmp/traub2005_data/2017_06_27/K2_Ik.dat')
+  ('Saved Gk in', '/tmp/traub2005_data/2017_06_29/K2_Gk.dat')
+  ('Saved Ik in', '/tmp/traub2005_data/2017_06_29/K2_Ik.dat')
   ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
   Elements under /clock[0]
-  ('Starting simulation', 333649882596489859996035936355031933525L, 'for', 0.35, 's')
+  ('Starting simulation', 287783968685182135182785054009559002100L, 'for', 0.35, 's')
   Finished simulation
   ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
-  ('Saved Vm in', '/tmp/traub2005_data/2017_06_27/KM_Vm.dat')
+  ('Saved Vm in', '/tmp/traub2005_data/2017_06_29/KM_Vm.dat')
   (1401, 1401)
-  ('Saved Gk in', '/tmp/traub2005_data/2017_06_27/KM_Gk.dat')
-  ('Saved Ik in', '/tmp/traub2005_data/2017_06_27/KM_Ik.dat')
+  ('Saved Gk in', '/tmp/traub2005_data/2017_06_29/KM_Gk.dat')
+  ('Saved Ik in', '/tmp/traub2005_data/2017_06_29/KM_Ik.dat')
   ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
   Elements under /clock[0]
-  ('Starting simulation', 241966303683427254741879992202970345342L, 'for', 0.35, 's')
+  ('Starting simulation', 36686195806297229170283937037925775002L, 'for', 0.35, 's')
   Finished simulation
   ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
-  ('Saved Vm in', '/tmp/traub2005_data/2017_06_27/KAHP_Vm.dat')
-  ('Saved Gk in', '/tmp/traub2005_data/2017_06_27/KAHP_Gk.dat')
-  ('Saved Ik in', '/tmp/traub2005_data/2017_06_27/KAHP_Ik.dat')
-  ('Saved [Ca2+] in', '/tmp/traub2005_data/2017_06_27/KAHP_Ca.dat')
+  ('Saved Vm in', '/tmp/traub2005_data/2017_06_29/KAHP_Vm.dat')
+  ('Saved Gk in', '/tmp/traub2005_data/2017_06_29/KAHP_Gk.dat')
+  ('Saved Ik in', '/tmp/traub2005_data/2017_06_29/KAHP_Ik.dat')
+  ('Saved [Ca2+] in', '/tmp/traub2005_data/2017_06_29/KAHP_Ca.dat')
   ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
   Elements under /clock[0]
-  ('Starting simulation', 130450161180299445574837519754651687762L, 'for', 0.35, 's')
+  ('Starting simulation', 79384975590958590213321850542543884827L, 'for', 0.35, 's')
   Finished simulation
   ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
-  ('Saved Vm in', '/tmp/traub2005_data/2017_06_27/KAHP_SLOWER_Vm.dat')
-  ('Saved Gk in', '/tmp/traub2005_data/2017_06_27/KAHP_SLOWER_Gk.dat')
-  ('Saved Ik in', '/tmp/traub2005_data/2017_06_27/KAHP_SLOWER_Ik.dat')
-  ('Saved [Ca2+] in', '/tmp/traub2005_data/2017_06_27/KAHP_SLOWER_Ca.dat')
+  ('Saved Vm in', '/tmp/traub2005_data/2017_06_29/KAHP_SLOWER_Vm.dat')
+  ('Saved Gk in', '/tmp/traub2005_data/2017_06_29/KAHP_SLOWER_Gk.dat')
+  ('Saved Ik in', '/tmp/traub2005_data/2017_06_29/KAHP_SLOWER_Ik.dat')
+  ('Saved [Ca2+] in', '/tmp/traub2005_data/2017_06_29/KAHP_SLOWER_Ca.dat')
   ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
   Elements under /clock[0]
-  ('Starting simulation', 18842490944915776732376550489652988216L, 'for', 0.35, 's')
+  ('Starting simulation', 296162494787471209258159843493076114769L, 'for', 0.35, 's')
   Finished simulation
   ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
-  ('Saved Vm in', '/tmp/traub2005_data/2017_06_27/KAHP_DP_Vm.dat')
-  ('Saved Gk in', '/tmp/traub2005_data/2017_06_27/KAHP_DP_Gk.dat')
-  ('Saved Ik in', '/tmp/traub2005_data/2017_06_27/KAHP_DP_Ik.dat')
-  ('Saved [Ca2+] in', '/tmp/traub2005_data/2017_06_27/KAHP_DP_Ca.dat')
+  ('Saved Vm in', '/tmp/traub2005_data/2017_06_29/KAHP_DP_Vm.dat')
+  ('Saved Gk in', '/tmp/traub2005_data/2017_06_29/KAHP_DP_Gk.dat')
+  ('Saved Ik in', '/tmp/traub2005_data/2017_06_29/KAHP_DP_Ik.dat')
+  ('Saved [Ca2+] in', '/tmp/traub2005_data/2017_06_29/KAHP_DP_Ca.dat')
   ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
   Elements under /cl......................
   ----------------------------------------------------------------------
-  Ran 22 tests in 0.003s
+  Ran 22 tests in 0.002s
   
   OK
   ock[0]
-  ('Starting simulation', 235856058615413177557427067191149088011L, 'for', 0.35, 's')
+  ('Starting simulation', 267510748745697699773752264704284678310L, 'for', 0.35, 's')
   Finished simulation
   ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
-  ('Saved Vm in', '/tmp/traub2005_data/2017_06_27/KC_Vm.dat')
-  ('Saved Gk in', '/tmp/traub2005_data/2017_06_27/KC_Gk.dat')
-  ('Saved Ik in', '/tmp/traub2005_data/2017_06_27/KC_Ik.dat')
-  ('Saved [Ca2+] in', '/tmp/traub2005_data/2017_06_27/KC_Ca.dat')
+  ('Saved Vm in', '/tmp/traub2005_data/2017_06_29/KC_Vm.dat')
+  ('Saved Gk in', '/tmp/traub2005_data/2017_06_29/KC_Gk.dat')
+  ('Saved Ik in', '/tmp/traub2005_data/2017_06_29/KC_Ik.dat')
+  ('Saved [Ca2+] in', '/tmp/traub2005_data/2017_06_29/KC_Ca.dat')
   ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
   Elements under /clock[0]
-  ('Starting simulation', 98799431063718451575710705734600675591L, 'for', 0.35, 's')
+  ('Starting simulation', 41473520916524199632398594697217851832L, 'for', 0.35, 's')
   Finished simulation
   ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
-  ('Saved Vm in', '/tmp/traub2005_data/2017_06_27/KC_FAST_Vm.dat')
-  ('Saved Gk in', '/tmp/traub2005_data/2017_06_27/KC_FAST_Gk.dat')
-  ('Saved Ik in', '/tmp/traub2005_data/2017_06_27/KC_FAST_Ik.dat')
-  ('Saved [Ca2+] in', '/tmp/traub2005_data/2017_06_27/KC_FAST_Ca.dat')
+  ('Saved Vm in', '/tmp/traub2005_data/2017_06_29/KC_FAST_Vm.dat')
+  ('Saved Gk in', '/tmp/traub2005_data/2017_06_29/KC_FAST_Gk.dat')
+  ('Saved Ik in', '/tmp/traub2005_data/2017_06_29/KC_FAST_Ik.dat')
+  ('Saved [Ca2+] in', '/tmp/traub2005_data/2017_06_29/KC_FAST_Ca.dat')
   [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/K2_Gk.dat.gz'
   [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/K2_Vm.dat.gz'
   [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KA_Gk.dat.gz'
@@ -979,444 +443,171 @@
   [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KDR_FS_Vm.dat.gz'
   [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KM_Gk.dat.gz'
   [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KM_Vm.dat.gz'
+  K
+  Testing NEURON Gk  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/NaPF_TCR_Gk.dat.gz'
+  OK
+  Testing MOOSE Vm  ...[Errno 2] No such file or..
+  ----------------------------------------------------------------------
+  Ran 32 tests in 0.003s
+  
+  OK
+   directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/testdata/NaPF_TCR_Vm.dat.gz'
+  OK
+  Testing NEURON Vm  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/NaPF_TCR_Vm.dat.gz'
+  OK
 ```
-- [ ] ./../traub_2005/py/test_hsolve_tcr.py
-
-`i``
-    ('data_dir =', '/tmp/traub2005_data/2017_06_27')
-    ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
-    Elements under /clock[0]
-    ('Starting simulation', 221160974367696030614095733078257065670L, 'for', 0.35, 's')
-    Finished simulation
-    ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
-    ('Saved Vm in', '/tmp/traub2005_data/2017_06_27/KDR_Vm.dat')
-    (1401, 1401)
-    ('Saved Gk in', '/tmp/traub2005_data/2017_06_27/KDR_Gk.dat')
-    ('Saved Ik in', '/tmp/traub2005_data/2017_06_27/KDR_Ik.dat')
-    ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
-    Elements under /clock[0]
-    ('Starting simulation', 238598849937293373804186882451093882450L, 'for', 0.35, 's')
-    Finished simulation
-    ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
-    ('Saved Vm in', '/tmp/traub2005_data/2017_06_27/KDR_FS_Vm.dat')
-    (1401, 1401)
-    ('Saved Gk in', '/tmp/traub2005_data/2017_06_27/KDR_FS_Gk.dat')
-    ('Saved Ik in', '/tmp/traub2005_data/2017_06_27/KDR_FS_Ik.dat')
-    ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
-    Elements under /clock[0]
-    ('Starting simulation', 255078710148271345867433384651488255421L, 'for', 0.35, 's')
-    Finished simulation
-    ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
-    ('Saved Vm in', '/tmp/traub2005_data/2017_06_27/KA_Vm.dat')
-    (1401, 1401)
-    ('Saved Gk in', '/tmp/traub2005_data/2017_06_27/KA_Gk.dat')
-    ('Saved Ik in', '/tmp/traub2005_data/2017_06_27/KA_Ik.dat')
-    ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
-    Elements under /clock[0]
-    ('Starting simulation', 289535226617074381573672567763395314604L, 'for', 0.35, 's')
-    Finished simulation
-    ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
-    ('Saved Vm in', '/tmp/traub2005_data/2017_06_27/KA_IB_Vm.dat')
-    (1401, 1401)
-    ('Saved Gk in', '/tmp/traub2005_data/2017_06_27/KA_IB_Gk.dat')
-    ('Saved Ik in', '/tmp/traub2005_data/2017_06_27/KA_IB_Ik.dat')
-    ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
-    Elements under /clock[0]
-    ('Starting simulation', 41672354994817370858545542288716004975L, 'for', 0.35, 's')
-    Finished simulation
-    ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
-    ('Saved Vm in', '/tmp/traub2005_data/2017_06_27/K2_Vm.dat')
-    (1401, 1401)
-    ('Saved Gk in', '/tmp/traub2005_data/2017_06_27/K2_Gk.dat')
-    ('Saved Ik in', '/tmp/traub2005_data/2017_06_27/K2_Ik.dat')
-    ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
-    Elements under /clock[0]
-    ('Starting simulation', 333649882596489859996035936355031933525L, 'for', 0.35, 's')
-    Finished simulation
-    ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
-    ('Saved Vm in', '/tmp/traub2005_data/2017_06_27/KM_Vm.dat')
-    (1401, 1401)
-    ('Saved Gk in', '/tmp/traub2005_data/2017_06_27/KM_Gk.dat')
-    ('Saved Ik in', '/tmp/traub2005_data/2017_06_27/KM_Ik.dat')
-    ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
-    Elements under /clock[0]
-    ('Starting simulation', 241966303683427254741879992202970345342L, 'for', 0.35, 's')
-    Finished simulation
-    ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
-    ('Saved Vm in', '/tmp/traub2005_data/2017_06_27/KAHP_Vm.dat')
-    ('Saved Gk in', '/tmp/traub2005_data/2017_06_27/KAHP_Gk.dat')
-    ('Saved Ik in', '/tmp/traub2005_data/2017_06_27/KAHP_Ik.dat')
-    ('Saved [Ca2+] in', '/tmp/traub2005_data/2017_06_27/KAHP_Ca.dat')
-    ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
-    Elements under /clock[0]
-    ('Starting simulation', 130450161180299445574837519754651687762L, 'for', 0.35, 's')
-    Finished simulation
-    ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
-    ('Saved Vm in', '/tmp/traub2005_data/2017_06_27/KAHP_SLOWER_Vm.dat')
-    ('Saved Gk in', '/tmp/traub2005_data/2017_06_27/KAHP_SLOWER_Gk.dat')
-    ('Saved Ik in', '/tmp/traub2005_data/2017_06_27/KAHP_SLOWER_Ik.dat')
-    ('Saved [Ca2+] in', '/tmp/traub2005_data/2017_06_27/KAHP_SLOWER_Ca.dat')
-    ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
-    Elements under /clock[0]
-    ('Starting simulation', 18842490944915776732376550489652988216L, 'for', 0.35, 's')
-    Finished simulation
-    ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
-    ('Saved Vm in', '/tmp/traub2005_data/2017_06_27/KAHP_DP_Vm.dat')
-    ('Saved Gk in', '/tmp/traub2005_data/2017_06_27/KAHP_DP_Gk.dat')
-    ('Saved Ik in', '/tmp/traub2005_data/2017_06_27/KAHP_DP_Ik.dat')
-    ('Saved [Ca2+] in', '/tmp/traub2005_data/2017_06_27/KAHP_DP_Ca.dat')
-    ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
-    Elements under /cl......................
-    ----------------------------------------------------------------------
-    Ran 22 tests in 0.003s
-    
-    OK
-    ock[0]
-    ('Starting simulation', 235856058615413177557427067191149088011L, 'for', 0.35, 's')
-    Finished simulation
-    ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
-    ('Saved Vm in', '/tmp/traub2005_data/2017_06_27/KC_Vm.dat')
-    ('Saved Gk in', '/tmp/traub2005_data/2017_06_27/KC_Gk.dat')
-    ('Saved Ik in', '/tmp/traub2005_data/2017_06_27/KC_Ik.dat')
-    ('Saved [Ca2+] in', '/tmp/traub2005_data/2017_06_27/KC_Ca.dat')
-    ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
-    Elements under /clock[0]
-    ('Starting simulation', 98799431063718451575710705734600675591L, 'for', 0.35, 's')
-    Finished simulation
-    ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
-    ('Saved Vm in', '/tmp/traub2005_data/2017_06_27/KC_FAST_Vm.dat')
-    ('Saved Gk in', '/tmp/traub2005_data/2017_06_27/KC_FAST_Gk.dat')
-    ('Saved Ik in', '/tmp/traub2005_data/2017_06_27/KC_FAST_Ik.dat')
-    ('Saved [Ca2+] in', '/tmp/traub2005_data/2017_06_27/KC_FAST_Ca.dat')
-    [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/K2_Gk.dat.gz'
-    [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/K2_Vm.dat.gz'
-    [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KA_Gk.dat.gz'
-    [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KA_Vm.dat.gz'
-    [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KAHP_Gk.dat.gz'
-    [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KAHP_Vm.dat.gz'
-    [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KAHP_DP_Gk.dat.gz'
-    [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KAHP_DP_Vm.dat.gz'
-    [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KAHP_SLOWER_Gk.dat.gz'
-    [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KAHP_SLOWER_Vm.dat.gz'
-    [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KA_IB_Gk.dat.gz'
-    [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KA_IB_Vm.dat.gz'
-    [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KC_Gk.dat.gz'
-    [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KC_Vm.dat.gz'
-    [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KC_FAST_Gk.dat.gz'
-    [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KC_FAST_Vm.dat.gz'
-    [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KDR_Gk.dat.gz'
-    [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KDR_Vm.dat.gz'
-    [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KDR_FS_Gk.dat.gz'
-    [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KDR_FS_Vm.dat.gz'
-    [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KM_Gk.dat.gz'
-    [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KM_Vm.dat.gz'
-```
-- [ ] ./../traub_2005/py/dump_f_i_curves.py
-
-`i``
-  ....('data_dir =', '/tmp/traub2005_data/2017_06_27')
+  ('data_dir =', '/tmp/traub2005_data/2017_06_29')
   ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
   Elements under /clock[0]
-  ('Starting simulation', 325561820975165195210620629298811943342L, 'for', 0.35, 's')
+  ('Starting simulation', 161960867808673258750941327888061564420L, 'for', 0.35, 's')
   Finished simulation
   ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
-  ('Saved Vm in', '/tmp/traub2005_data/2017_06_27/NaF_Vm.dat')
+  ('Saved Vm in', '/tmp/traub2005_data/2017_06_29/KDR_Vm.dat')
   (1401, 1401)
-  ('Saved Gk in', '/tmp/traub2005_data/2017_06_27/NaF_Gk.dat')
-  ('Saved Ik in', '/tmp/traub2005_data/2017_06_27/NaF_Ik.dat')
+  ('Saved Gk in', '/tmp/traub2005_data/2017_06_29/KDR_Gk.dat')
+  ('Saved Ik in', '/tmp/traub2005_data/2017_06_29/KDR_Ik.dat')
   ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
   Elements under /clock[0]
-  ('Starting simulation', 133550198806683723771222885143050316901L, 'for', 0.35, 's')
+  ('Starting simulation', 139931537324603362871431717753493813398L, 'for', 0.35, 's')
   Finished simulation
   ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
-  ('Saved Vm in', '/tmp/traub2005_data/2017_06_27/NaF_TCR_Vm.dat')
+  ('Saved Vm in', '/tmp/traub2005_data/2017_06_29/KDR_FS_Vm.dat')
   (1401, 1401)
-  ('Saved Gk in', '/tmp/traub2005_data/2017_06_27/NaF_TCR_Gk.dat')
-  ('Saved Ik in', '/tmp/traub2005_data/2017_06_27/NaF_TCR_Ik.dat')
+  ('Saved Gk in', '/tmp/traub2005_data/2017_06_29/KDR_FS_Gk.dat')
+  ('Saved Ik in', '/tmp/traub2005_data/2017_06_29/KDR_FS_Ik.dat')
   ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
   Elements under /clock[0]
-  ('Starting simulation', 138324612508380380818594088259496070176L, 'for', 0.35, 's')
+  ('Starting simulation', 137364228230556122433750901550615303055L, 'for', 0.35, 's')
   Finished simulation
   ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
-  ('Saved Vm in', '/tmp/traub2005_data/2017_06_27/NaF2_Vm.dat')
+  ('Saved Vm in', '/tmp/traub2005_data/2017_06_29/KA_Vm.dat')
   (1401, 1401)
-  ('Saved Gk in', '/tmp/traub2005_data/2017_06_27/NaF2_Gk.dat')
-  ('Saved Ik in', '/tmp/traub2005_data/2017_06_27/NaF2_Ik.dat')
+  ('Saved Gk in', '/tmp/traub2005_data/2017_06_29/KA_Gk.dat')
+  ('Saved Ik in', '/tmp/traub2005_data/2017_06_29/KA_Ik.dat')
   ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
   Elements under /clock[0]
-  ('Starting simulation', 229700919589343978344821737547583707019L, 'for', 0.35, 's')
+  ('Starting simulation', 187414707464618056364930354075464769989L, 'for', 0.35, 's')
   Finished simulation
   ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
-  ('Saved Vm in', '/tmp/traub2005_data/2017_06_27/NaF2_nRT_Vm.dat')
+  ('Saved Vm in', '/tmp/traub2005_data/2017_06_29/KA_IB_Vm.dat')
   (1401, 1401)
-  ('Saved Gk in', '/tmp/traub2005_data/2017_06_27/NaF2_nRT_Gk.dat')
-  ('Saved Ik in', '/tmp/traub2005_data/2017_06_27/NaF2_nRT_Ik.dat')
+  ('Saved Gk in', '/tmp/traub2005_data/2017_06_29/KA_IB_Gk.dat')
+  ('Saved Ik in', '/tmp/traub2005_data/2017_06_29/KA_IB_Ik.dat')
   ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
   Elements under /clock[0]
-  ('Starting simulation', 159958170493697466714674449253856976136L, 'for', 0.35, 's')
+  ('Starting simulation', 328843709217768268196843393005840550745L, 'for', 0.35, 's')
   Finished simulation
   ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
-  ('Saved Vm in', '/tmp/traub2005_data/2017_06_27/NaP_Vm.dat')
+  ('Saved Vm in', '/tmp/traub2005_data/2017_06_29/K2_Vm.dat')
   (1401, 1401)
-  ('Saved Gk in', '/tmp/traub2005_data/2017_06_27/NaP_Gk.dat')
-  ('Saved Ik in', '/tmp/traub2005_data/2017_0Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_4[0]/DeepLTS_4[0]'.
-  ]
-  ('Starting simulation', 214485281330192688028260113592459302111L, 'for', 0.35, 's')
+  ('Saved Gk in', '/tmp/traub2005_data/2017_06_29/K2_Gk.dat')
+  ('Saved Ik in', '/tmp/traub2005_data/2017_06_29/K2_Ik.dat')
+  ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
+  Elements under /clock[0]
+  ('Starting simulation', 287783968685182135182785054009559002100L, 'for', 0.35, 's')
   Finished simulation
   ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
-  ('Saved Vm in', '/tmp/traub2005_data/2017_06_27/NaPF_Vm.dat')
+  ('Saved Vm in', '/tmp/traub2005_data/2017_06_29/KM_Vm.dat')
   (1401, 1401)
-  ('Saved Gk in', '/tmp/traub2005_data/2017_06_27/NaPF_Gk.dat')
-  ('Saved Ik in', '/tmp/traub2005_data/2017_06_27/NaPF_Ik.dat')
+  ('Saved Gk in', '/tmp/traub2005_data/2017_06_29/KM_Gk.dat')
+  ('Saved Ik in', '/tmp/traub2005_data/2017_06_29/KM_Ik.dat')
   ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
   Elements under /clock[0]
-  ('Starting simulation', 147702062391583136608377857220262504825L, 'for', 0.35, 's')
+  ('Starting simulation', 36686195806297229170283937037925775002L, 'for', 0.35, 's')
   Finished simulation
   ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
-  ('Saved Vm in', '/tmp/traub2005_data/2017_06_27/NaPF_SS_Vm.dat')
-  (1401, 1401)
-  ('Saved Gk in', '/tmp/traub2005_data/2017_06_27/NaPF_SS_Gk.dat')
-  ('Saved Ik in', '/tmp/traub2005_data/2017_06_27/NaPF_SS_Ik.dat')
+  ('Saved Vm in', '/tmp/traub2005_data/2017_06_29/KAHP_Vm.dat')
+  ('Saved Gk in', '/tmp/traub2005_data/2017_06_29/KAHP_Gk.dat')
+  ('Saved Ik in', '/tmp/traub2005_data/2017_06_29/KAHP_Ik.dat')
+  ('Saved [Ca2+] in', '/tmp/traub2005_data/2017_06_29/KAHP_Ca.dat')
   ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
   Elements under /clock[0]
-  ('Starting simulation', 112351602507443325731809884597663945629L, 'for', 0.35, 's')
+  ('Starting simulation', 79384975590958590213321850542543884827L, 'for', 0.35, 's')
   Finished simulation
   ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
-  ('Saved Vm in', '/tmp/traub2005_data/2017_06_27/NaPF_TCR_Vm.dat')
-  (1401, 1401)
-  ('Saved Gk in', '/tmp/traub2005_data/2017_06_27/NaPF_TCR_Gk.dat')
-  ('Saved Ik in', '/tmp/traub2005_data/2017_06_27/NaPF_TCR_Ik.dat')
-  Testing MOOSE Gk  ...
-  [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/testdata/NaF_Gk.dat.gz'
-  OK
-  Testing NEURON Gk  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/NaF_Gk.dat.gz'
-  OK
-  Testing MOOSE Vm  ...
-  [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/testdata/NaF_Vm.dat.gz'
-  OK
-  Testing NEURON Vm  ... [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/NaF_Vm.dat.gz'
-  OK
-  Testing MOOSE Gk  ... [E..........................rrno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/testdata/NaF2_Gk.dat.gz'
-  OK
-  Testing NEURON Gk  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/NaF2_Gk.dat.gz'
-  OK
-  Testing MOOSE Vm  ... [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/testdata/NaF2_Vm.dat.gz'
-  OK
-  Testing NEURON Vm  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/NaF2_Vm.dat.gz'
-  OK
-  Testing MOOSE Gk  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/testdata/NaF2_nRT_Gk.dat.gz'
-  OK
-  Testing NEURON Gk  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/NaF2_nRT_Gk.dat.gz'
-  OK
-  Testing MOOSE Vm  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/testdata/NaF2_nRT_Vm.dat.gz'
-  OK
-  Testing NEURON Vm  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/NaF2_nRT_Vm.dat.gz'
-  OK
-  Testing MOOSE Gk  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/testdata/NaF_TCR_Gk.dat.gz'
-  OK
-  Testing NEURON Gk  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/NaF_TCR_Gk.dat.gz'
-  OK
-  Testing MOOSE Vm  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/testdata/NaF_TCR_Vm.dat.gz'
-  OK
-  Testing NEURON Vm  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/NaF_TCR_Vm.dat.gz'
-  OK
-  Testing MOOSE Gk  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/testdata/NaP_Gk.dat.gz'
-  OK
-  Testing NEURON Gk  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/NaP_Gk.dat.gz'
-  OK
-  Testing MOOSE Vm  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/testdata/NaP_Vm.dat.gz'
-  OK
-  Testing NEURON Vm  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/NaP_Vm.dat.gz'
-  OK
-  Testing MOOSE Gk  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/testdata/NaPF_Gk.dat.gz'
-  OK
-  Testing NEURON Gk  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/NaPF_Gk.dat.gz'
-  OK
-  Testing MOOSE Vm  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/testdata/NaPF_Vm.dat.gz'
-  OK
-  Testing NEURON Vm  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/NaPF_Vm.dat.gz'
-  OK
-  Testing MOOSE Gk  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/testdata/NaPF_SS_Gk.dat.gz'
-  OK
-  Testing NEURON Gk  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/NaPF_SS_Gk.dat.gz'
-  OK
-  Testing MOOSE Vm  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/testdata/NaPF_SS_Vm.dat.gz'
-  OK
-  Testing NEURON Vm  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/NaPF_SS_Vm.dat.gz'
-  OK
-  Testing MOOSE Gk  ... [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/testdata/NaPF_TCR_Gk.dat.gz'
+  ('Saved Vm in', '/tmp/traub2005_data/2017_06_29/KAHP_SLOWER_Vm.dat')
+  ('Saved Gk in', '/tmp/traub2005_data/2017_06_29/KAHP_SLOWER_Gk.dat')
+  ('Saved Ik in', '/tmp/traub2005_data/2017_06_29/KAHP_SLOWER_Ik.dat')
+  ('Saved [Ca2+] in', '/tmp/traub2005_data/2017_06_29/KAHP_SLOWER_Ca.dat')
+  ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
+  Elements under /clock[0]
+  ('Starting simulation', 296162494787471209258159843493076114769L, 'for', 0.35, 's')
+  Finished simulation
+  ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
+  ('Saved Vm in', '/tmp/traub2005_data/2017_06_29/KAHP_DP_Vm.dat')
+  ('Saved Gk in', '/tmp/traub2005_data/2017_06_29/KAHP_DP_Gk.dat')
+  ('Saved Ik in', '/tmp/traub2005_data/2017_06_29/KAHP_DP_Ik.dat')
+  ('Saved [Ca2+] in', '/tmp/traub2005_data/2017_06_29/KAHP_DP_Ca.dat')
+  ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
+  Elements under /cl......................
+  ----------------------------------------------------------------------
+  Ran 22 tests in 0.002s
+  
   OK
+  ock[0]
+  ('Starting simulation', 267510748745697699773752264704284678310L, 'for', 0.35, 's')
+  Finished simulation
+  ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
+  ('Saved Vm in', '/tmp/traub2005_data/2017_06_29/KC_Vm.dat')
+  ('Saved Gk in', '/tmp/traub2005_data/2017_06_29/KC_Gk.dat')
+  ('Saved Ik in', '/tmp/traub2005_data/2017_06_29/KC_Ik.dat')
+  ('Saved [Ca2+] in', '/tmp/traub2005_data/2017_06_29/KC_Ca.dat')
+  ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
+  Elements under /clock[0]
+  ('Starting simulation', 41473520916524199632398594697217851832L, 'for', 0.35, 's')
+  Finished simulation
+  ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
+  ('Saved Vm in', '/tmp/traub2005_data/2017_06_29/KC_FAST_Vm.dat')
+  ('Saved Gk in', '/tmp/traub2005_data/2017_06_29/KC_FAST_Gk.dat')
+  ('Saved Ik in', '/tmp/traub2005_data/2017_06_29/KC_FAST_Ik.dat')
+  ('Saved [Ca2+] in', '/tmp/traub2005_data/2017_06_29/KC_FAST_Ca.dat')
+  [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/K2_Gk.dat.gz'
+  [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/K2_Vm.dat.gz'
+  [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KA_Gk.dat.gz'
+  [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KA_Vm.dat.gz'
+  [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KAHP_Gk.dat.gz'
+  [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KAHP_Vm.dat.gz'
+  [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KAHP_DP_Gk.dat.gz'
+  [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KAHP_DP_Vm.dat.gz'
+  [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KAHP_SLOWER_Gk.dat.gz'
+  [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KAHP_SLOWER_Vm.dat.gz'
+  [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KA_IB_Gk.dat.gz'
+  [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KA_IB_Vm.dat.gz'
+  [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KC_Gk.dat.gz'
+  [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KC_Vm.dat.gz'
+  [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KC_FAST_Gk.dat.gz'
+  [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KC_FAST_Vm.dat.gz'
+  [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KDR_Gk.dat.gz'
+  [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KDR_Vm.dat.gz'
+  [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KDR_FS_Gk.dat.gz'
+  [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KDR_FS_Vm.dat.gz'
+  [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KM_Gk.dat.gz'
+  [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/KM_Vm.dat.gz'
+  K
   Testing NEURON Gk  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/NaPF_TCR_Gk.dat.gz'
   OK
-  Testing MOOSE Vm  ...[Errno 2] No such file..
+  Testing MOOSE Vm  ...[Errno 2] No such file or..
   ----------------------------------------------------------------------
-  Ran 32 tests in 0.004s
+  Ran 32 tests in 0.003s
   
   OK
-   or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/testdata/NaPF_TCR_Vm.dat.gz'
+   directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/testdata/NaPF_TCR_Vm.dat.gz'
   OK
   Testing NEURON Vm  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/NaPF_TCR_Vm.dat.gz'
   OK
 ```
-- [ ] ./../traub_2005/py/fig_a4c.py
-
-`i``
-    ....('data_dir =', '/tmp/traub2005_data/2017_06_27')
-    ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
-    Elements under /clock[0]
-    ('Starting simulation', 325561820975165195210620629298811943342L, 'for', 0.35, 's')
-    Finished simulation
-    ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
-    ('Saved Vm in', '/tmp/traub2005_data/2017_06_27/NaF_Vm.dat')
-    (1401, 1401)
-    ('Saved Gk in', '/tmp/traub2005_data/2017_06_27/NaF_Gk.dat')
-    ('Saved Ik in', '/tmp/traub2005_data/2017_06_27/NaF_Ik.dat')
-    ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
-    Elements under /clock[0]
-    ('Starting simulation', 133550198806683723771222885143050316901L, 'for', 0.35, 's')
-    Finished simulation
-    ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
-    ('Saved Vm in', '/tmp/traub2005_data/2017_06_27/NaF_TCR_Vm.dat')
-    (1401, 1401)
-    ('Saved Gk in', '/tmp/traub2005_data/2017_06_27/NaF_TCR_Gk.dat')
-    ('Saved Ik in', '/tmp/traub2005_data/2017_06_27/NaF_TCR_Ik.dat')
-    ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
-    Elements under /clock[0]
-    ('Starting simulation', 138324612508380380818594088259496070176L, 'for', 0.35, 's')
-    Finished simulation
-    ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
-    ('Saved Vm in', '/tmp/traub2005_data/2017_06_27/NaF2_Vm.dat')
-    (1401, 1401)
-    ('Saved Gk in', '/tmp/traub2005_data/2017_06_27/NaF2_Gk.dat')
-    ('Saved Ik in', '/tmp/traub2005_data/2017_06_27/NaF2_Ik.dat')
-    ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
-    Elements under /clock[0]
-    ('Starting simulation', 229700919589343978344821737547583707019L, 'for', 0.35, 's')
-    Finished simulation
-    ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
-    ('Saved Vm in', '/tmp/traub2005_data/2017_06_27/NaF2_nRT_Vm.dat')
-    (1401, 1401)
-    ('Saved Gk in', '/tmp/traub2005_data/2017_06_27/NaF2_nRT_Gk.dat')
-    ('Saved Ik in', '/tmp/traub2005_data/2017_06_27/NaF2_nRT_Ik.dat')
-    ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
-    Elements under /clock[0]
-    ('Starting simulation', 159958170493697466714674449253856976136L, 'for', 0.35, 's')
-    Finished simulation
-    ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
-    ('Saved Vm in', '/tmp/traub2005_data/2017_06_27/NaP_Vm.dat')
-    (1401, 1401)
-    ('Saved Gk in', '/tmp/traub2005_data/2017_06_27/NaP_Gk.dat')
-    ('Saved Ik in', '/tmp/traub2005_data/2017_0Warning: HSolve::setPath(): No compartments found at or below '/model[0]/mc_4[0]/DeepLTS_4[0]'.
-    ]
-    ('Starting simulation', 214485281330192688028260113592459302111L, 'for', 0.35, 's')
-    Finished simulation
-    ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
-    ('Saved Vm in', '/tmp/traub2005_data/2017_06_27/NaPF_Vm.dat')
-    (1401, 1401)
-    ('Saved Gk in', '/tmp/traub2005_data/2017_06_27/NaPF_Gk.dat')
-    ('Saved Ik in', '/tmp/traub2005_data/2017_06_27/NaPF_Ik.dat')
-    ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
-    Elements under /clock[0]
-    ('Starting simulation', 147702062391583136608377857220262504825L, 'for', 0.35, 's')
-    Finished simulation
-    ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
-    ('Saved Vm in', '/tmp/traub2005_data/2017_06_27/NaPF_SS_Vm.dat')
-    (1401, 1401)
-    ('Saved Gk in', '/tmp/traub2005_data/2017_06_27/NaPF_SS_Gk.dat')
-    ('Saved Ik in', '/tmp/traub2005_data/2017_06_27/NaPF_SS_Ik.dat')
-    ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
-    Elements under /clock[0]
-    ('Starting simulation', 112351602507443325731809884597663945629L, 'for', 0.35, 's')
-    Finished simulation
-    ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
-    ('Saved Vm in', '/tmp/traub2005_data/2017_06_27/NaPF_TCR_Vm.dat')
-    (1401, 1401)
-    ('Saved Gk in', '/tmp/traub2005_data/2017_06_27/NaPF_TCR_Gk.dat')
-    ('Saved Ik in', '/tmp/traub2005_data/2017_06_27/NaPF_TCR_Ik.dat')
-    Testing MOOSE Gk  ...
-    [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/testdata/NaF_Gk.dat.gz'
-    OK
-    Testing NEURON Gk  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/NaF_Gk.dat.gz'
-    OK
-    Testing MOOSE Vm  ...
-    [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/testdata/NaF_Vm.dat.gz'
-    OK
-    Testing NEURON Vm  ... [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/NaF_Vm.dat.gz'
-    OK
-    Testing MOOSE Gk  ... [E..........................rrno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/testdata/NaF2_Gk.dat.gz'
-    OK
-    Testing NEURON Gk  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/NaF2_Gk.dat.gz'
-    OK
-    Testing MOOSE Vm  ... [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/testdata/NaF2_Vm.dat.gz'
-    OK
-    Testing NEURON Vm  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/NaF2_Vm.dat.gz'
-    OK
-    Testing MOOSE Gk  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/testdata/NaF2_nRT_Gk.dat.gz'
-    OK
-    Testing NEURON Gk  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/NaF2_nRT_Gk.dat.gz'
-    OK
-    Testing MOOSE Vm  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/testdata/NaF2_nRT_Vm.dat.gz'
-    OK
-    Testing NEURON Vm  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/NaF2_nRT_Vm.dat.gz'
-    OK
-    Testing MOOSE Gk  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/testdata/NaF_TCR_Gk.dat.gz'
-    OK
-    Testing NEURON Gk  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/NaF_TCR_Gk.dat.gz'
-    OK
-    Testing MOOSE Vm  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/testdata/NaF_TCR_Vm.dat.gz'
-    OK
-    Testing NEURON Vm  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/NaF_TCR_Vm.dat.gz'
-    OK
-    Testing MOOSE Gk  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/testdata/NaP_Gk.dat.gz'
-    OK
-    Testing NEURON Gk  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/NaP_Gk.dat.gz'
-    OK
-    Testing MOOSE Vm  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/testdata/NaP_Vm.dat.gz'
-    OK
-    Testing NEURON Vm  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/NaP_Vm.dat.gz'
-    OK
-    Testing MOOSE Gk  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/testdata/NaPF_Gk.dat.gz'
-    OK
-    Testing NEURON Gk  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/NaPF_Gk.dat.gz'
-    OK
-    Testing MOOSE Vm  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/testdata/NaPF_Vm.dat.gz'
-    OK
-    Testing NEURON Vm  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/NaPF_Vm.dat.gz'
-    OK
-    Testing MOOSE Gk  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/testdata/NaPF_SS_Gk.dat.gz'
-    OK
-    Testing NEURON Gk  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/NaPF_SS_Gk.dat.gz'
-    OK
-    Testing MOOSE Vm  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/testdata/NaPF_SS_Vm.dat.gz'
-    OK
-    Testing NEURON Vm  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/NaPF_SS_Vm.dat.gz'
-    OK
-    Testing MOOSE Gk  ... [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/testdata/NaPF_TCR_Gk.dat.gz'
-    OK
-    Testing NEURON Gk  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/NaPF_TCR_Gk.dat.gz'
-    OK
-    Testing MOOSE Vm  ...[Errno 2] No such file..
-    ----------------------------------------------------------------------
-    Ran 32 tests in 0.004s
-    
-    OK
-     or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/testdata/NaPF_TCR_Vm.dat.gz'
-    OK
-    Testing NEURON Vm  ...[Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/NaPF_TCR_Vm.dat.gz'
-    OK
-```
-- [ ] ./../traub_2005/py/test_supaxoaxonic.py
+- [ ] ./../traub_2005/py/test_spinystellate.py
 
 `i``
   .
   ----------------------------------------------------------------------
-  Ran 1 test in 3.803s
+  Ran 1 test in 3.110s
   
   OK
-  ('data_dir =', '/tmp/traub2005_data/2017_06_27')
-  ('/test95289067419864544275597697099366924074[0]/model[0]/soma[0]/CaPool[0]', 2.758685680259519e+16, 0.05)
+  ('data_dir =', '/tmp/traub2005_data/2017_06_29')
+  ('/test161932173425002043168685567420602996843[0]/model[0]/soma[0]/CaPool[0]', 2.758685680259519e+16, 0.05)
   
-  [ /test95289067419864544275597697099366924074[0]/model[0]/soma[0]/KAHP_SLOWER[0] ]
+  [ /test161932173425002043168685567420602996843[0]/model[0]/soma[0]/KAHP_SLOWER[0] ]
   Ek                   = -0.1
   Gbar                 = 9.42477796077e-10
   Gk                   = 0.0
@@ -1430,18 +621,18 @@
   className            = HHChannel
   dt                   = 5e-05
   fieldIndex           = 0
-  idValue              = 594
+  idValue              = 607
   index                = 0
   instant              = 0
   modulation           = 1.0
   name                 = KAHP_SLOWER
   numData              = 1
   numField             = 1
-  path                 = /test95289067419864544275597697099366924074[0]/model[0]/soma[0]/KAHP_SLOWER[0]
+  path                 = /test161932173425002043168685567420602996843[0]/model[0]/soma[0]/KAHP_SLOWER[0]
   tick                 = 2
   useConcentration     = 1
   
-  [ /test95289067419864544275597697099366924074[0]/model[0]/soma[0]/KC_FAST[0] ]
+  [ /test161932173425002043168685567420602996843[0]/model[0]/soma[0]/KC_FAST[0] ]
   Ek                   = -0.1
   Gbar                 = 9.42477796077e-08
   Gk                   = 0.0
@@ -1455,18 +646,18 @@
   className            = HHChannel
   dt                   = 5e-05
   fieldIndex           = 0
-  idValue              = 601
+  idValue              = 614
   index                = 0
   instant              = 4
   modulation           = 1.0
   name                 = KC_FAST
   numData              = 1
   numField             = 1
-  path                 = /test95289067419864544275597697099366924074[0]/model[0]/soma[0]/KC_FAST[0]
+  path                 = /test161932173425002043168685567420602996843[0]/model[0]/soma[0]/KC_FAST[0]
   tick                 = 2
   useConcentration     = 1
   
-  [ /test95289067419864544275597697099366924074[0]/model[0]/soma[0]/CaL[0] ]
+  [ /test161932173425002043168685567420602996843[0]/model[0]/soma[0]/CaL[0] ]
   Ek                   = 0.125
   Gbar                 = 4.71238898038e-09
   Gk                   = 0.0
@@ -1480,33 +671,33 @@
   className            = HHChannel
   dt                   = 5e-05
   fieldIndex           = 0
-  idValue              = 643
+  idValue              = 656
   index                = 0
   instant              = 0
   modulation           = 1.0
   name                 = CaL
   numData              = 1
   numField             = 1
-  path                 = /test95289067419864544275597697099366924074[0]/model[0]/soma[0]/CaL[0]
+  path                 = /test161932173425002043168685567420602996843[0]/model[0]/soma[0]/CaL[0]
   tick                 = 2
   useConcentration     = 0
   ('Setting up clocks: simdt', 2.5e-05, 'plotdt', 2.5e-05)
   Elements under /clock[0]
-  Simulation of 0.35 s finished in 0.189301 s
+  Simulation of 0.35 s finished in 0.127953 s
   [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/nrn/data/singlecomp_Vm.dat'
 ```
-- [ ] ./../traub_2005/py/test_spinystellate.py
+- [ ] ./../traub_2005/py/test_supaxoaxonic.py
 
 `i``
     .
     ----------------------------------------------------------------------
-    Ran 1 test in 3.803s
+    Ran 1 test in 3.110s
     
     OK
-    ('data_dir =', '/tmp/traub2005_data/2017_06_27')
-    ('/test95289067419864544275597697099366924074[0]/model[0]/soma[0]/CaPool[0]', 2.758685680259519e+16, 0.05)
+    ('data_dir =', '/tmp/traub2005_data/2017_06_29')
+    ('/test161932173425002043168685567420602996843[0]/model[0]/soma[0]/CaPool[0]', 2.758685680259519e+16, 0.05)
     
-    [ /test95289067419864544275597697099366924074[0]/model[0]/soma[0]/KAHP_SLOWER[0] ]
+    [ /test161932173425002043168685567420602996843[0]/model[0]/soma[0]/KAHP_SLOWER[0] ]
     Ek                   = -0.1
     Gbar                 = 9.42477796077e-10
     Gk                   = 0.0
@@ -1520,18 +711,18 @@
     className            = HHChannel
     dt                   = 5e-05
     fieldIndex           = 0
-    idValue              = 594
+    idValue              = 607
     index                = 0
     instant              = 0
     modulation           = 1.0
     name                 = KAHP_SLOWER
     numData              = 1
     numField             = 1
-    path                 = /test95289067419864544275597697099366924074[0]/model[0]/soma[0]/KAHP_SLOWER[0]
+    path                 = /test161932173425002043168685567420602996843[0]/model[0]/soma[0]/KAHP_SLOWER[0]
     tick                 = 2
     useConcentration     = 1
     
-    [ /test95289067419864544275597697099366924074[0]/model[0]/soma[0]/KC_FAST[0] ]
+    [ /test161932173425002043168685567420602996843[0]/model[0]/soma[0]/KC_FAST[0] ]
     Ek                   = -0.1
     Gbar                 = 9.42477796077e-08
     Gk                   = 0.0
@@ -1545,18 +736,18 @@
     className            = HHChannel
     dt                   = 5e-05
     fieldIndex           = 0
-    idValue              = 601
+    idValue              = 614
     index                = 0
     instant              = 4
     modulation           = 1.0
     name                 = KC_FAST
     numData              = 1
     numField             = 1
-    path                 = /test95289067419864544275597697099366924074[0]/model[0]/soma[0]/KC_FAST[0]
+    path                 = /test161932173425002043168685567420602996843[0]/model[0]/soma[0]/KC_FAST[0]
     tick                 = 2
     useConcentration     = 1
     
-    [ /test95289067419864544275597697099366924074[0]/model[0]/soma[0]/CaL[0] ]
+    [ /test161932173425002043168685567420602996843[0]/model[0]/soma[0]/CaL[0] ]
     Ek                   = 0.125
     Gbar                 = 4.71238898038e-09
     Gk                   = 0.0
@@ -1570,33 +761,33 @@
     className            = HHChannel
     dt                   = 5e-05
     fieldIndex           = 0
-    idValue              = 643
+    idValue              = 656
     index                = 0
     instant              = 0
     modulation           = 1.0
     name                 = CaL
     numData              = 1
     numField             = 1
-    path                 = /test95289067419864544275597697099366924074[0]/model[0]/soma[0]/CaL[0]
+    path                 = /test161932173425002043168685567420602996843[0]/model[0]/soma[0]/CaL[0]
     tick                 = 2
     useConcentration     = 0
     ('Setting up clocks: simdt', 2.5e-05, 'plotdt', 2.5e-05)
     Elements under /clock[0]
-    Simulation of 0.35 s finished in 0.189301 s
+    Simulation of 0.35 s finished in 0.127953 s
     [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/nrn/data/singlecomp_Vm.dat'
 ```
-- [ ] ./../traub_2005/py/test_nontuftedrs.py
+- [ ] ./../traub_2005/py/test_supbasket.py
 
 `i``
       .
       ----------------------------------------------------------------------
-      Ran 1 test in 3.803s
+      Ran 1 test in 3.110s
       
       OK
-      ('data_dir =', '/tmp/traub2005_data/2017_06_27')
-      ('/test95289067419864544275597697099366924074[0]/model[0]/soma[0]/CaPool[0]', 2.758685680259519e+16, 0.05)
+      ('data_dir =', '/tmp/traub2005_data/2017_06_29')
+      ('/test161932173425002043168685567420602996843[0]/model[0]/soma[0]/CaPool[0]', 2.758685680259519e+16, 0.05)
       
-      [ /test95289067419864544275597697099366924074[0]/model[0]/soma[0]/KAHP_SLOWER[0] ]
+      [ /test161932173425002043168685567420602996843[0]/model[0]/soma[0]/KAHP_SLOWER[0] ]
       Ek                   = -0.1
       Gbar                 = 9.42477796077e-10
       Gk                   = 0.0
@@ -1610,18 +801,18 @@
       className            = HHChannel
       dt                   = 5e-05
       fieldIndex           = 0
-      idValue              = 594
+      idValue              = 607
       index                = 0
       instant              = 0
       modulation           = 1.0
       name                 = KAHP_SLOWER
       numData              = 1
       numField             = 1
-      path                 = /test95289067419864544275597697099366924074[0]/model[0]/soma[0]/KAHP_SLOWER[0]
+      path                 = /test161932173425002043168685567420602996843[0]/model[0]/soma[0]/KAHP_SLOWER[0]
       tick                 = 2
       useConcentration     = 1
       
-      [ /test95289067419864544275597697099366924074[0]/model[0]/soma[0]/KC_FAST[0] ]
+      [ /test161932173425002043168685567420602996843[0]/model[0]/soma[0]/KC_FAST[0] ]
       Ek                   = -0.1
       Gbar                 = 9.42477796077e-08
       Gk                   = 0.0
@@ -1635,18 +826,18 @@
       className            = HHChannel
       dt                   = 5e-05
       fieldIndex           = 0
-      idValue              = 601
+      idValue              = 614
       index                = 0
       instant              = 4
       modulation           = 1.0
       name                 = KC_FAST
       numData              = 1
       numField             = 1
-      path                 = /test95289067419864544275597697099366924074[0]/model[0]/soma[0]/KC_FAST[0]
+      path                 = /test161932173425002043168685567420602996843[0]/model[0]/soma[0]/KC_FAST[0]
       tick                 = 2
       useConcentration     = 1
       
-      [ /test95289067419864544275597697099366924074[0]/model[0]/soma[0]/CaL[0] ]
+      [ /test161932173425002043168685567420602996843[0]/model[0]/soma[0]/CaL[0] ]
       Ek                   = 0.125
       Gbar                 = 4.71238898038e-09
       Gk                   = 0.0
@@ -1660,272 +851,34 @@
       className            = HHChannel
       dt                   = 5e-05
       fieldIndex           = 0
-      idValue              = 643
+      idValue              = 656
       index                = 0
       instant              = 0
       modulation           = 1.0
       name                 = CaL
       numData              = 1
       numField             = 1
-      path                 = /test95289067419864544275597697099366924074[0]/model[0]/soma[0]/CaL[0]
+      path                 = /test161932173425002043168685567420602996843[0]/model[0]/soma[0]/CaL[0]
       tick                 = 2
       useConcentration     = 0
       ('Setting up clocks: simdt', 2.5e-05, 'plotdt', 2.5e-05)
       Elements under /clock[0]
-      Simulation of 0.35 s finished in 0.189301 s
+      Simulation of 0.35 s finished in 0.127953 s
       [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/nrn/data/singlecomp_Vm.dat'
 ```
 - [ ] ./../traub_2005/py/test_suplts.py
+- [ ] ./../traub_2005/py/test_suppyrfrb.py
 
 `i``
-  ...
-  ----------------------------------------------------------------------
-  Ran 3 tests in 0.001s
-  
-  OK
-  ('data_dir =', '/tmp/traub2005_data/2017_06_27')
-  ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
-  Elements under /clock[0]
-  ('Starting simulation', 263479175017974185993903802204725680007L, 'for', 0.35, 's')
-  Finished simulation
-  ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
-  ('Saved Vm in', '/tmp/traub2005_data/2017_06_27/CaPool_Vm.dat')
-  ('Saved Gk in', '/tmp/traub2005_data/2017_06_27/CaPool_Gk.dat')
-  ('Saved Ik in', '/tmp/traub2005_data/2017_06_27/CaPool_Ik.dat')
-  ('>>', 1401)
-  ('Saved [Ca2+] in', '/tmp/traub2005_data/2017_06_27/CaPool_Ca.dat')
-  (1401,)
-  [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/CaPool_Ca.dat.gz'
-  [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/CaL_Gk.dat.gz'
-  [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/CaL_Vm.dat.gz'
-```
-- [ ] ./../traub_2005/py/vclamptest.py
-- [ ] ./../traub_2005/py/test_deepaxoaxonic.py
-
-`i``
-    ...
-    ----------------------------------------------------------------------
-    Ran 3 tests in 0.001s
-    
-    OK
-    ('data_dir =', '/tmp/traub2005_data/2017_06_27')
-    ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
-    Elements under /clock[0]
-    ('Starting simulation', 263479175017974185993903802204725680007L, 'for', 0.35, 's')
-    Finished simulation
-    ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
-    ('Saved Vm in', '/tmp/traub2005_data/2017_06_27/CaPool_Vm.dat')
-    ('Saved Gk in', '/tmp/traub2005_data/2017_06_27/CaPool_Gk.dat')
-    ('Saved Ik in', '/tmp/traub2005_data/2017_06_27/CaPool_Ik.dat')
-    ('>>', 1401)
-    ('Saved [Ca2+] in', '/tmp/traub2005_data/2017_06_27/CaPool_Ca.dat')
-    (1401,)
-    [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/CaPool_Ca.dat.gz'
-    [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/CaL_Gk.dat.gz'
-    [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/CaL_Vm.dat.gz'
-```
-
-`i``
-      ...
-      ----------------------------------------------------------------------
-      Ran 3 tests in 0.001s
-      
-      OK
-      ('data_dir =', '/tmp/traub2005_data/2017_06_27')
-      ('Setting up clocks: simdt', 5e-06, 'plotdt', 0.00025)
-      Elements under /clock[0]
-      ('Starting simulation', 263479175017974185993903802204725680007L, 'for', 0.35, 's')
-      Finished simulation
-      ('Vm:', 1401, 'Gk', 1401, 'Ik', 1401)
-      ('Saved Vm in', '/tmp/traub2005_data/2017_06_27/CaPool_Vm.dat')
-      ('Saved Gk in', '/tmp/traub2005_data/2017_06_27/CaPool_Gk.dat')
-      ('Saved Ik in', '/tmp/traub2005_data/2017_06_27/CaPool_Ik.dat')
-      ('>>', 1401)
-      ('Saved [Ca2+] in', '/tmp/traub2005_data/2017_06_27/CaPool_Ca.dat')
-      (1401,)
-      [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/CaPool_Ca.dat.gz'
-      [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/CaL_Gk.dat.gz'
-      [Errno 2] No such file or directory: '/home1/dilawars/SVN/GITHUB/BhallaLab/moose-examples/traub_2005/py/../nrn/data/CaL_Vm.dat.gz'
-```
-- [ ] ./../parallelSolver/Fig2_v4.py
-- [ ] ./../traub_2005/py/test_deeplts.py
-
-`i``
-    .aking Bistable model
-    x3*( 0.1 + -5.0*x1 + 5.0*x1*x1 + -1.0*x1*x1*x1 + 10.0*x0*x1/(1+x1+10*x2) + -5.0*x1*x2) 
-    x2*( 0.1*x0*x0 + -0.01*x1) 
-    x2 * exp( -((x0 - t)^2)/(2* 25.0) ) 
-    Making FHN model
-    x3*( 5.0*(x1 - 2.0 - (x1-2.0)^3/3 - (x2-0.8) + x0)) 
-    x2*( (x0-2.0 + 0.7 - 0.8*(x1-0.8))/2.5) 
-    x2 * exp( -((x0 - t)^2)/(2* 1.0) ) 
-    Making Negative Feedback model
-    x3*( -0.1*x1 + -0.2*x1*x2 + 10.0*x0) 
-    x2*( 0.2*x0 + -0.1*x1) 
-    x2 * exp( -((x0 - t)^2)/(2* 1.0) ) 
-    Making Negative Feedforward model
-    x3*( -0.1*x1 + -1.0*x1*x2 + 10.0*x0) 
-    x2*( 2.0*x0 + -0.1*x1) 
-    x2 * exp( -((x0 - t)^2)/(2* 1.0) ) 
-```
-- [ ] ./../traub_2005/py/test_nrt.py
-
-`i``
-      .aking Bistable model
-      x3*( 0.1 + -5.0*x1 + 5.0*x1*x1 + -1.0*x1*x1*x1 + 10.0*x0*x1/(1+x1+10*x2) + -5.0*x1*x2) 
-      x2*( 0.1*x0*x0 + -0.01*x1) 
-      x2 * exp( -((x0 - t)^2)/(2* 25.0) ) 
-      Making FHN model
-      x3*( 5.0*(x1 - 2.0 - (x1-2.0)^3/3 - (x2-0.8) + x0)) 
-      x2*( (x0-2.0 + 0.7 - 0.8*(x1-0.8))/2.5) 
-      x2 * exp( -((x0 - t)^2)/(2* 1.0) ) 
-      Making Negative Feedback model
-      x3*( -0.1*x1 + -0.2*x1*x2 + 10.0*x0) 
-      x2*( 0.2*x0 + -0.1*x1) 
-      x2 * exp( -((x0 - t)^2)/(2* 1.0) ) 
-      Making Negative Feedforward model
-      x3*( -0.1*x1 + -1.0*x1*x2 + 10.0*x0) 
-      x2*( 2.0*x0 + -0.1*x1) 
-      x2 * exp( -((x0 - t)^2)/(2* 1.0) ) 
-```
-
-`i``
-      .aking Bistable model
-      x3*( 0.1 + -5.0*x1 + 5.0*x1*x1 + -1.0*x1*x1*x1 + 10.0*x0*x1/(1+x1+10*x2) + -5.0*x1*x2) 
-      x2*( 0.1*x0*x0 + -0.01*x1) 
-      x2 * exp( -((x0 - t)^2)/(2* 25.0) ) 
-      Making FHN model
-      x3*( 5.0*(x1 - 2.0 - (x1-2.0)^3/3 - (x2-0.8) + x0)) 
-      x2*( (x0-2.0 + 0.7 - 0.8*(x1-0.8))/2.5) 
-      x2 * exp( -((x0 - t)^2)/(2* 1.0) ) 
-      Making Negative Feedback model
-      x3*( -0.1*x1 + -0.2*x1*x2 + 10.0*x0) 
-      x2*( 0.2*x0 + -0.1*x1) 
-      x2 * exp( -((x0 - t)^2)/(2* 1.0) ) 
-      Making Negative Feedforward model
-      x3*( -0.1*x1 + -1.0*x1*x2 + 10.0*x0) 
-      x2*( 2.0*x0 + -0.1*x1) 
-      x2 * exp( -((x0 - t)^2)/(2* 1.0) ) 
-```
-- [ ] ./../kinetics/test_ksolve.py
-
-`i``
-```
-- [ ] ./../cuda/testHsolve.py
-
-`i``
-```
-- [ ] ./../neuroml/lobster_pyloric/STG_net.py
-
-`i``
-  Selecting a channel randomly form ['CaT_STG', 'Na_STG', 'CaS_STG', 'H_STG', 'Kd_STG', 'KA_STG']
-  Selected CaT_STG
-  Running for 0
-  Running for 1
-  .nml.networkml: INFO     Creating population AB_PD of cell type AB_PD
-  moose.nml.networkml: INFO     Creating population AB_PD of cell type AB_PD
-  moose.nml.networkml: INFO     Creating population CA1group of cell type CA1soma
-  moose.nml.networkml: INFO     Creating population CA1group of cell type CA1soma
-  moose.nml.networkml: INFO     Creating input under /elec 
-  moose.nml.networkml: INFO     Creating input under /elec 
-  Reinit MOOSE ... 
-  Solver: ee
-  Using exp euler
-  Using exp euler
-  Running ... 
-  Showing plots ...
-  unning ... 
-  Showing plots ...
-  ing PY_LP
-  moose.nml.networkml: INFO     Setting PY_LP
-  moose.nml.networkml: INFO     Setting AB_PY
-  moose.nml.networkml: INFO     Setting AB_PY
-  moose.nml.networkml: INFO     Setting AB_LP
-  moose.nml.networkml: INFO     Setting AB_LP
-  moose.nml.networkml: INFO     Setting LP_PY
-  moose.nml.networkml: INFO     Setting LP_PY
-  moose.nml.networkml: INFO     Setting LP_ABPD
-  moose.nml.networkml: INFO     Setting LP_ABPD
-  moose.nml.networkml: INFO     Setting PD_PY
-  moose.nml.networkml: INFO     Setting PD_PY
-```
-- [ ] ./../neuroml/allChannelsCell/allChannelsCell.py
-- [ ] ./../neuroml/GranuleCell/Granule98.py
-
-`i``
-    moose.nml.neuroml: INFO     Loading neuroml file GranuleCell.net.xml 
-    moose.nml.neuroml: INFO     Loading neuroml file GranuleCell.net.xml 
-    moose.nml.neuroml: INFO     Using default temperature of 32.0 degree Celsius
-    moose.nml.neuroml: INFO     Using default temperature of 32.0 degree Celsius
-    moose.nml.networkml: INFO     Creating population Gran of cell type Granule_98
-    moose.nml.networkml: INFO     Creating population Gran of cell type Granule_98
-    moose.nml.networkml: INFO     Creating input under /elec 
-    moose.nml.networkml: INFO     Creating input under /elec 
-    [INFO] Loading Ca pool Gran_CaPool_98 into /library . 
-    Reinit MOOSE ... 
-    Solver: hsolve
-    Using hsolve
-    Using hsolve
-    Running ... 
-    Showing plots ...
-```
+- [ ] ./../traub_2005/py/test_suppyrrs.py
 
 `i``
-    moose.nml.neuroml: INFO     Loading neuroml file GranuleCell.net.xml 
-    moose.nml.neuroml: INFO     Loading neuroml file GranuleCell.net.xml 
-    moose.nml.neuroml: INFO     Using default temperature of 32.0 degree Celsius
-    moose.nml.neuroml: INFO     Using default temperature of 32.0 degree Celsius
-    moose.nml.networkml: INFO     Creating population Gran of cell type Granule_98
-    moose.nml.networkml: INFO     Creating population Gran of cell type Granule_98
-    moose.nml.networkml: INFO     Creating input under /elec 
-    moose.nml.networkml: INFO     Creating input under /elec 
-    [INFO] Loading Ca pool Gran_CaPool_98 into /library . 
-    Reinit MOOSE ... 
-    Solver: hsolve
-    Using hsolve
-    Using hsolve
-    Running ... 
-    Showing plots ...
-```
-- [ ] ./../tutorials/ChemicalBistables/doseResponse.py
-
+      .      .
 `i``
-  tau = 0.004 lambda = 0.00031gamma[2, 5] = 
-      -1    -1    -2     1     0
-       1     1     2     0     1
-  Nr[3, 4] = 
-      -1     0     0     1
-       0     2    -1    -1
-       0     0  -0.5   0.5
-  LU[5, 9] = 
-      -1     0     0     1     1     0     0     0     0
-       0     2    -1    -1    -1     1     0     0     0
-       0     0  -0.5   0.5   0.5   0.5     1     0     0
-       0     0     0     0    -1    -1    -2     1     0
-       0     0     0     0     1     1     2     0     1
-  -20
-  Warning: SteadyState iteration failed, status = input domain error, nIter = 3
-  e-10 0.0 0.0 0.0 0.0 0.0 0.0 
-  ml: INFO     Creating input under /elec 
-  moose.nml.networkml: INFO     Creating input under /elec 
-  Reinit MOOSE.
-  Solver: ee
-  Using exp euler
-  Running now...
-  ('Spiketimes :', array([ 0.07185,  0.16435,  0.25685,  0.34935,  0.44185,  0.53435,
-          0.62685,  0.71935,  0.81185,  0.90435,  0.9969 ,  1.0894 ,
-          1.1819 ,  1.2744 ,  1.3669 ,  1.4594 ,  1.5519 ,  1.6444 ,
-          1.7369 ,  1.8294 ,  1.9219 ]))
 ```
-- [ ] ./../tutorials/ChemicalBistables/mapkFB.py
-
-`i``
-  just plotting old results for Fig 5.
-  To simulate and save, give sim as commandline argument.
-  You need to simulate first before loading data file.
-  re-run with sim as a command line argument.
 ```
-- [ ] ./../tutorials/ExcInhNet/ExcInhNet_Ostojic2014_Brunel2000.py
+      .```
+- [ ] ./../traub_2005/py/test_tcr.py
 
 `i``
-```
+        .```
diff --git a/_travis/BROKEN b/_travis/BROKEN
index a0f5bf6c..813cba09 100644
--- a/_travis/BROKEN
+++ b/_travis/BROKEN
@@ -8,3 +8,18 @@
 ./../hopfield/hopfield.py
 ./../hopfield/hopfield1.py
 ./../neuroml/LIF/LIFxml_firing_hsolve.py
+./../hopfield/hopfield.py
+./../hopfield/hopfield1.py
+./../neuroml/LIF/LIFxml_firing_hsolve.py
+./../snippets/Izhikevich_with_synapse.py
+./../snippets/testSigNeur.py
+./../hopfield/hopfield.py
+./../hopfield/hopfield1.py
+./../neuroml/LIF/LIFxml_firing_hsolve.py
+./../snippets/Izhikevich_with_synapse.py
+./../snippets/testSigNeur.py
+./../hopfield/hopfield.py
+./../hopfield/hopfield1.py
+./../neuroml/LIF/LIFxml_firing_hsolve.py
+./../snippets/Izhikevich_with_synapse.py
+./../snippets/testSigNeur.py
diff --git a/_travis/FAILED b/_travis/FAILED
deleted file mode 100644
index e1ed7623..00000000
--- a/_travis/FAILED
+++ /dev/null
@@ -1,44 +0,0 @@
-- [ ] ./../snippets/reacDiffConcGradient.py
-
-```
-  timeout: the monitored command dumped core
-```
-- [ ] ./../snippets/loadSbmlmodel.py
-
-```
-  [FATAL] Module python-libsbml is not found.
-  This module can be installed by following command in terminal:
-  	 easy_install python-libsbml
-  Traceback (most recent call last):
-    File "loadSbmlmodel.py", line 122, in <module>
-      modelPath, modelpathexist,msg = main()
-    File "loadSbmlmodel.py", line 84, in main
-      elif sbmlId.path != '/':
-  AttributeError: 'NoneType' object has no attribute 'path'
-```
-- [ ] ./../snippets/crossComptSimpleReac.py
-
-```
-    [FATAL] Module python-libsbml is not found.
-    This module can be installed by following command in terminal:
-    	 easy_install python-libsbml
-    Traceback (most recent call last):
-      File "loadSbmlmodel.py", line 122, in <module>
-        modelPath, modelpathexist,msg = main()
-      File "loadSbmlmodel.py", line 84, in main
-        elif sbmlId.path != '/':
-    AttributeError: 'NoneType' object has no attribute 'path'
-```
-- [ ] ./../snippets/crossComptSimpleReacGSSA.py
-
-```
-  timeout: the monitored command dumped core
-```
-- [ ] ./../traub_2005/py/display_morphology.py
-
-```
-  Traceback (most recent call last):
-    File "display_morphology.py", line 52, in <module>
-      import networkx as nx
-  ImportError: No module named networkx
-```
diff --git a/_travis/GUISCRIPTS b/_travis/GUISCRIPTS
index 03841e38..90e9b9ec 100644
--- a/_travis/GUISCRIPTS
+++ b/_travis/GUISCRIPTS
@@ -1,27 +1,27 @@
-./../snippets/testWigglySpines.py
-./../snippets/insertSpinesWithoutRdesigneur.py
-./../snippets/loadMorphology.py
-./../snippets/insertSpines.py
-./../snippets/testRdesigneur.py
-./../traub_2005/py/gui.py
-./../hopfield/hopfield_ui.py
 ./../hopfield/guiHopfield.py
+./../hopfield/hopfield_ui.py
+./../izhikevich/demogui_qt.py
+./../moogli/color_update.py
+./../moogli/purkinje_simulation.py
+./../moogli/purkinje_simulation_with_rm.py
+./../moogli/purkinje_simulation_with_rm_and_graph.py
+./../moogli/simple_viewing.py
+./../paper-2015/Fig2_elecModels/Fig2C.py
+./../paper-2015/Fig2_elecModels/Fig2D.py
+./../paper-2015/Fig2_elecModels/Fig2E.py
 ./../paper-2015/Fig4_ReacDiff/Fig4B.py
-./../paper-2015/Fig4_ReacDiff/rxdSpineSize.py
-./../paper-2015/Fig4_ReacDiff/Fig4GHIJ.py
 ./../paper-2015/Fig4_ReacDiff/Fig4CDEF.py
+./../paper-2015/Fig4_ReacDiff/Fig4GHIJ.py
+./../paper-2015/Fig4_ReacDiff/rxdSpineSize.py
 ./../paper-2015/Fig5_CellMultiscale/Fig5A.py
 ./../paper-2015/Fig5_CellMultiscale/Fig5BCD.py
-./../paper-2015/Fig2_elecModels/Fig2E.py
-./../paper-2015/Fig2_elecModels/Fig2C.py
-./../paper-2015/Fig2_elecModels/Fig2D.py
 ./../paper-2015/Fig6_NetMultiscale/Fig6A.py
-./../izhikevich/demogui_qt.py
-./../moogli/simple_viewing.py
-./../moogli/color_update.py
-./../moogli/purkinje_simulation_with_rm.py
-./../moogli/purkinje_simulation.py
-./../moogli/purkinje_simulation_with_rm_and_graph.py
-./../util/moogli_viewer.py
-./../squid/squid_demo.py
 ./../squid/channeleditor.py
+./../squid/squid_demo.py
+./../traub_2005/py/gui.py
+./../util/moogli_viewer.py
+./../snippets/insertSpines.py
+./../snippets/insertSpinesWithoutRdesigneur.py
+./../snippets/loadMorphology.py
+./../snippets/testRdesigneur.py
+./../snippets/testWigglySpines.py
diff --git a/_travis/INTERACTIVE b/_travis/INTERACTIVE
index cc578f67..93a701c2 100644
--- a/_travis/INTERACTIVE
+++ b/_travis/INTERACTIVE
@@ -1,14 +1,14 @@
-./../snippets/transportBranchingNeuron.py
+./../izhikevich/Izhikevich.py
+./../paper-2015/Fig6_NetMultiscale/Fig6BCDE.py
+./../paper-2015/Fig6_NetMultiscale/ReducedModel.py
+./../snippets/IntegrateFireZoo.py
 ./../snippets/crossComptNeuroMesh.py
-./../snippets/gssaRDspiny.py
 ./../snippets/cylinderDiffusion.py
-./../snippets/reacDiffBranchingNeuron.py
 ./../snippets/diffSpinyNeuron.py
-./../snippets/IntegrateFireZoo.py
+./../snippets/gssaRDspiny.py
+./../snippets/reacDiffBranchingNeuron.py
 ./../snippets/reacDiffSpinyNeuron.py
-./../paper-2015/Fig6_NetMultiscale/Fig6BCDE.py
-./../paper-2015/Fig6_NetMultiscale/ReducedModel.py
-./../izhikevich/Izhikevich.py
-./../tutorials/ChemicalBistables/scaleVolumes.py
+./../snippets/transportBranchingNeuron.py
 ./../tutorials/ChemicalBistables/propagationBis.py
+./../tutorials/ChemicalBistables/scaleVolumes.py
 ./../tutorials/ChemicalOscillators/TuringOneDim.py
diff --git a/_travis/SUCCEEDED b/_travis/SUCCEEDED
index 679a4494..e7cbcce1 100644
--- a/_travis/SUCCEEDED
+++ b/_travis/SUCCEEDED
@@ -1,91 +1,21 @@
-- [x] ./../snippets/wildcard.py
-- [x] ./../snippets/nsdf.py
-- [x] ./../snippets/scriptGssaSolver.py
-- [x] ./../snippets/rxdFuncDiffusionStoch.py
-- [x] ./../snippets/vectors.py
-- [x] ./../snippets/cylinderMotor.py
-- [x] ./../snippets/funcRateHarmonicOsc.py
-- [x] ./../snippets/STDP.py
-- [x] ./../snippets/interpol2d.py
-- [x] ./../snippets/loadCspaceModel.py
-- [x] ./../snippets/cubeMeshSigNeur.py
-- [x] ./../snippets/multicomp_lif.py
-- [x] ./../snippets/pyrun1.py
-- [x] ./../snippets/neuronFromDotp.py
-- [x] ./../snippets/rxdFuncDiffusion.py
-- [x] ./../snippets/synapse.py
-- [x] ./../snippets/lifcomp.py
-- [x] ./../snippets/synapse_tutorial.py
-- [x] ./../snippets/bidirectionalPlasticity.py
-- [x] ./../snippets/hdfdemo.py
-- [x] ./../snippets/threading_demo.py
-- [x] ./../snippets/crossComptOscillator.py
-- [x] ./../snippets/pyrun.py
-- [x] ./../snippets/changeFuncExpression.py
-- [x] ./../snippets/compartment_net.py
-- [x] ./../snippets/tweakingParameters.py
-- [x] ./../snippets/multiComptSigNeur.py
-- [x] ./../snippets/showclocks.py
-- [x] ./../snippets/startstop.py
-- [x] ./../snippets/convert_Genesis2Sbml.py
-- [x] ./../snippets/funcReacLotkaVolterra.py
-- [x] ./../snippets/intfire.py
-- [x] ./../snippets/analogStimTable.py
-- [x] ./../snippets/lif.py
-- [x] ./../snippets/chemDoseResponse.py
-- [x] ./../snippets/tabledemo.py
-- [x] ./../snippets/symcompartment.py
-- [x] ./../snippets/loadKineticModel.py
-- [x] ./../snippets/showmsg.py
-- [x] ./../snippets/onetoonemsg.py
-- [x] ./../snippets/ionchannel.py
-- [x] ./../snippets/scriptKineticSolver.py
-- [x] ./../snippets/vclamp.py
-- [x] ./../snippets/mgblock.py
-- [x] ./../snippets/scriptKineticModel.py
-- [x] ./../snippets/gapjunction.py
-- [x] ./../snippets/diffusion_using_Gillespie.py
-- [x] ./../snippets/singlemsgcross.py
-- [x] ./../snippets/diffEqSolution.py
-- [x] ./../snippets/HsolveInstability.py
-- [x] ./../snippets/interpol.py
-- [x] ./../snippets/randomspike.py
-- [x] ./../snippets/func.py
-- [x] ./../snippets/cspaceSteadyState.py
-- [x] ./../snippets/timetable.py
-- [x] ./../snippets/funcInputToPools.py
-- [x] ./../snippets/savemodel.py
-- [x] ./../snippets/compartment_net_no_array.py
-- [x] ./../snippets/stochasticLotkaVolterra.py
-- [x] ./../snippets/pulsegen.py
-- [x] ./../snippets/RandSpikeStats.py
-- [x] ./../snippets/rxdReacDiffusion.py
-- [x] ./../MemoryNetworks/bidirectional_plastic_switch.py
-- [x] ./../snippets/helloMoose.py
-- [x] ./../traub_2005/py/test_cachans.py
-- [x] ./../traub_2005/py/test_kchans.py
-- [x] ./../traub_2005/py/test_archan.py
-- [x] ./../traub_2005/py/test_nachans.py
-- [x] ./../traub_2005/py/test_singlecomp.py
-- [x] ./../traub_2005/py/test_capool.py
-- [x] ./../parallelSolver/abstrModelEqns2.py
 - [x] ./../cuda/testScript.py
-- [x] ./../passive/passive_soma.py
-- [x] ./../neuroml/lobster_pyloric/channels/ChannelTest.py
-- [x] ./../neuroml/CA1PyramidalCell/CA1_hsolve.py
 - [x] ./../neuroml/CA1PyramidalCell/CA1.py
 - [x] ./../neuroml/LIF/LIFxml_firing.py
+- [x] ./../neuroml/CA1PyramidalCell/CA1_hsolve.py
 - [x] ./../neuroml/GranuleCell/Granule98_hsolve.py
-- [x] ./../rall_1964/rall64.py
+- [x] ./../neuroml/GranuleCell/Granule98.py
 - [x] ./../neuroml/LIF/twoLIFxml_firing.py
-- [x] ./../tutorials/ChemicalBistables/strongBis.py
-- [x] ./../tutorials/ExcInhNetCaPlasticity/ExcInhNet_HigginsGraupnerBrunel2014.py
-- [x] ./../tutorials/ChemicalBistables/simpleBis.py
-- [x] ./../tutorials/ChemicalBistables/findSteadyState.py
-- [x] ./../tutorials/ChemicalOscillators/repressillator.py
-- [x] ./../tutorials/ChemicalOscillators/slowFbOsc.py
-- [x] ./../tutorials/ChemicalOscillators/relaxationOsc.py
+- [x] ./../neuroml/lobster_pyloric/channels/ChannelTest.py
+- [x] ./../parallelSolver/abstrModelEqns2.py
+- [x] ./../passive/passive_soma.py
+- [x] ./../rall_1964/rall64.py
 - [x] ./../squid/squid.py
 - [x] ./../squid/squid_setup.py
-- [x] ./../symcomp/symcomp_readcell.py
 - [x] ./../symcomp/symcomp.py
+- [x] ./../symcomp/symcomp_readcell.py
+- [x] ./../traub_2005/py/test_capool.py
+- [x] ./../traub_2005/py/test_archan.py
+- [x] ./../traub_2005/py/test_cachans.py
+- [x] ./../traub_2005/py/test_nachans.py
+- [x] ./../traub_2005/py/test_kchans.py
+- [x] ./../traub_2005/py/test_singlecomp.py
diff --git a/_travis/TORUN b/_travis/TORUN
index 2bc4f44c..681ea28e 100644
--- a/_travis/TORUN
+++ b/_travis/TORUN
@@ -1,140 +1,140 @@
-./../snippets/scriptGssaSolver.py
-./../snippets/nsdf.py
-./../snippets/wildcard.py
-./../snippets/rxdFuncDiffusionStoch.py
-./../snippets/cylinderMotor.py
+./../cuda/testHsolve.py
+./../cuda/testScript.py
+./../kinetics/test_ksolve.py
+./../neuroml/CA1PyramidalCell/CA1.py
+./../neuroml/CA1PyramidalCell/CA1_hsolve.py
+./../neuroml/GranuleCell/Granule98.py
+./../neuroml/GranuleCell/Granule98_hsolve.py
+./../neuroml/LIF/LIFxml_firing.py
+./../neuroml/LIF/twoLIFxml_firing.py
+./../neuroml/allChannelsCell/allChannelsCell.py
+./../neuroml/lobster_pyloric/STG_net.py
+./../neuroml/lobster_pyloric/channels/ChannelTest.py
+./../parallelSolver/Fig2_v4.py
+./../parallelSolver/abstrModelEqns2.py
+./../passive/passive_soma.py
+./../rall_1964/rall64.py
+./../squid/squid.py
+./../squid/squid_setup.py
+./../symcomp/symcomp.py
+./../symcomp/symcomp_readcell.py
+./../traub_2005/py/display_morphology.py
+./../traub_2005/py/dump_f_i_curves.py
+./../traub_2005/py/fig_a2_fs.py
+./../traub_2005/py/fig_a3.py
+./../traub_2005/py/fig_a4c.py
+./../traub_2005/py/test_archan.py
+./../traub_2005/py/test_cachans.py
+./../traub_2005/py/test_capool.py
+./../traub_2005/py/test_deepaxoaxonic.py
+./../traub_2005/py/test_deepbasket.py
+./../traub_2005/py/test_deeplts.py
+./../traub_2005/py/test_hsolve_tcr.py
+./../traub_2005/py/test_kchans.py
+./../traub_2005/py/test_nachans.py
+./../traub_2005/py/test_nontuftedrs.py
+./../traub_2005/py/test_nrt.py
+./../traub_2005/py/test_singlecomp.py
+./../traub_2005/py/test_spinystellate.py
+./../traub_2005/py/test_supaxoaxonic.py
+./../traub_2005/py/test_supbasket.py
+./../traub_2005/py/test_suplts.py
+./../traub_2005/py/test_suppyrfrb.py
+./../traub_2005/py/test_suppyrrs.py
+./../traub_2005/py/test_tcr.py
+./../traub_2005/py/test_tuftedib.py
+./../traub_2005/py/test_tuftedrs.py
+./../traub_2005/py/vclamptest.py
+./../unsorted/ksolve_with_heavy_load.py
+./../MemoryNetworks/bidirectional_plastic_switch.py
+./../snippets/GraupnerBrunel2012_STDPfromCaPlasticity.py
+./../snippets/HigginsGraupnerBrunel2014_LifetimeCaPlasticity.py
+./../snippets/HsolveInstability.py
+./../snippets/RandSpikeStats.py
 ./../snippets/STDP.py
-./../snippets/vectors.py
-./../snippets/funcRateHarmonicOsc.py
-./../snippets/loadCspaceModel.py
-./../snippets/cubeMeshSigNeur.py
-./../snippets/multicomp_lif.py
-./../snippets/interpol2d.py
-./../snippets/pyrun1.py
-./../snippets/reacDiffConcGradient.py
-./../snippets/rxdFuncDiffusion.py
-./../snippets/neuronFromDotp.py
-./../snippets/synapse.py
-./../snippets/lifcomp.py
+./../snippets/analogStimTable.py
 ./../snippets/bidirectionalPlasticity.py
-./../snippets/synapse_tutorial.py
-./../snippets/recurrentIntFire.py
-./../snippets/crossComptOscillator.py
-./../snippets/hdfdemo.py
-./../snippets/threading_demo.py
-./../snippets/switchKineticSolvers.py
-./../snippets/twocells.py
-./../snippets/pyrun.py
 ./../snippets/changeFuncExpression.py
-./../snippets/multiComptSigNeur.py
+./../snippets/chemDoseResponse.py
 ./../snippets/compartment_net.py
-./../snippets/stimtable.py
-./../snippets/tweakingParameters.py
-./../snippets/showclocks.py
-./../snippets/startstop.py
-./../snippets/function.py
-./../snippets/pulsegen2.py
+./../snippets/compartment_net_no_array.py
 ./../snippets/convert_Genesis2Sbml.py
+./../snippets/crossComptOscillator.py
 ./../snippets/crossComptSimpleReac.py
+./../snippets/crossComptSimpleReacGSSA.py
+./../snippets/cspaceSteadyState.py
+./../snippets/cubeMeshSigNeur.py
+./../snippets/cylinderMotor.py
+./../snippets/diffEqSolution.py
+./../snippets/diffusion_using_Gillespie.py
+./../snippets/findChemSteadyState.py
+./../snippets/func.py
+./../snippets/funcInputToPools.py
+./../snippets/funcRateHarmonicOsc.py
 ./../snippets/funcReacLotkaVolterra.py
-./../snippets/loadSbmlmodel.py
-./../snippets/analogStimTable.py
-./../snippets/chemDoseResponse.py
+./../snippets/function.py
+./../snippets/gapjunction.py
+./../snippets/gssaCylinderDiffusion.py
+./../snippets/hdfdemo.py
+./../snippets/helloMoose.py
+./../snippets/hhcomp.py
+./../snippets/interpol.py
+./../snippets/interpol2d.py
 ./../snippets/intfire.py
+./../snippets/ionchannel.py
 ./../snippets/lif.py
-./../snippets/tabledemo.py
-./../snippets/symcompartment.py
-./../snippets/gssaCylinderDiffusion.py
+./../snippets/lifcomp.py
+./../snippets/loadCspaceModel.py
 ./../snippets/loadKineticModel.py
-./../snippets/findChemSteadyState.py
-./../snippets/showmsg.py
-./../snippets/GraupnerBrunel2012_STDPfromCaPlasticity.py
-./../snippets/onetoonemsg.py
-./../snippets/ionchannel.py
-./../snippets/traub_naf.py
-./../snippets/scriptKineticSolver.py
-./../snippets/hhcomp.py
-./../snippets/vclamp.py
-./../snippets/gapjunction.py
+./../snippets/loadSbmlmodel.py
 ./../snippets/mgblock.py
-./../snippets/scriptKineticModel.py
-./../snippets/singlemsgcross.py
-./../snippets/HsolveInstability.py
-./../snippets/diffEqSolution.py
-./../snippets/diffusion_using_Gillespie.py
+./../snippets/multiComptSigNeur.py
+./../snippets/multicomp_lif.py
+./../snippets/multiscaleOneCompt.py
+./../snippets/neuronFromDotp.py
+./../snippets/nsdf.py
+./../snippets/onetoonemsg.py
+./../snippets/pulsegen.py
+./../snippets/pulsegen2.py
+./../snippets/pyrun.py
+./../snippets/pyrun1.py
 ./../snippets/randomspike.py
-./../snippets/interpol.py
-./../snippets/cspaceSteadyState.py
-./../snippets/func.py
+./../snippets/reacDiffConcGradient.py
+./../snippets/recurrentIntFire.py
 ./../snippets/recurrentLIF.py
-./../snippets/timetable.py
-./../snippets/HigginsGraupnerBrunel2014_LifetimeCaPlasticity.py
-./../snippets/funcInputToPools.py
-./../snippets/stochasticLotkaVolterra.py
-./../snippets/compartment_net_no_array.py
-./../snippets/multiscaleOneCompt.py
-./../snippets/savemodel.py
-./../snippets/RandSpikeStats.py
+./../snippets/rxdFuncDiffusion.py
+./../snippets/rxdFuncDiffusionStoch.py
 ./../snippets/rxdReacDiffusion.py
-./../snippets/pulsegen.py
-./../snippets/crossComptSimpleReacGSSA.py
-./../snippets/helloMoose.py
-./../unsorted/ksolve_with_heavy_load.py
-./../MemoryNetworks/bidirectional_plastic_switch.py
-./../traub_2005/py/test_tuftedrs.py
-./../traub_2005/py/test_supbasket.py
-./../traub_2005/py/test_deepbasket.py
-./../traub_2005/py/display_morphology.py
-./../traub_2005/py/fig_a3.py
-./../traub_2005/py/fig_a2_fs.py
-./../traub_2005/py/test_suppyrrs.py
-./../traub_2005/py/test_suppyrfrb.py
-./../traub_2005/py/test_tuftedib.py
-./../traub_2005/py/test_cachans.py
-./../traub_2005/py/test_tcr.py
-./../traub_2005/py/test_kchans.py
-./../traub_2005/py/test_hsolve_tcr.py
-./../traub_2005/py/dump_f_i_curves.py
-./../traub_2005/py/test_archan.py
-./../traub_2005/py/test_nachans.py
-./../traub_2005/py/fig_a4c.py
-./../traub_2005/py/test_supaxoaxonic.py
-./../traub_2005/py/test_spinystellate.py
-./../traub_2005/py/test_singlecomp.py
-./../traub_2005/py/test_nontuftedrs.py
-./../traub_2005/py/test_capool.py
-./../traub_2005/py/test_suplts.py
-./../traub_2005/py/vclamptest.py
-./../traub_2005/py/test_deepaxoaxonic.py
-./../traub_2005/py/test_deeplts.py
-./../traub_2005/py/test_nrt.py
-./../parallelSolver/Fig2_v4.py
-./../parallelSolver/abstrModelEqns2.py
-./../kinetics/test_ksolve.py
-./../cuda/testScript.py
-./../cuda/testHsolve.py
-./../passive/passive_soma.py
-./../neuroml/CA1PyramidalCell/CA1_hsolve.py
-./../neuroml/CA1PyramidalCell/CA1.py
-./../neuroml/lobster_pyloric/STG_net.py
-./../neuroml/lobster_pyloric/channels/ChannelTest.py
-./../neuroml/allChannelsCell/allChannelsCell.py
-./../neuroml/GranuleCell/Granule98.py
-./../neuroml/GranuleCell/Granule98_hsolve.py
-./../neuroml/LIF/LIFxml_firing.py
-./../neuroml/LIF/twoLIFxml_firing.py
-./../rall_1964/rall64.py
-./../tutorials/ChemicalBistables/strongBis.py
+./../snippets/savemodel.py
+./../snippets/scriptGssaSolver.py
+./../snippets/scriptKineticModel.py
+./../snippets/scriptKineticSolver.py
+./../snippets/showclocks.py
+./../snippets/showmsg.py
+./../snippets/singlemsgcross.py
+./../snippets/startstop.py
+./../snippets/stimtable.py
+./../snippets/stochasticLotkaVolterra.py
+./../snippets/switchKineticSolvers.py
+./../snippets/symcompartment.py
+./../snippets/synapse.py
+./../snippets/synapse_tutorial.py
+./../snippets/tabledemo.py
+./../snippets/threading_demo.py
+./../snippets/timetable.py
+./../snippets/traub_naf.py
+./../snippets/tweakingParameters.py
+./../snippets/twocells.py
+./../snippets/vclamp.py
+./../snippets/vectors.py
+./../snippets/wildcard.py
 ./../tutorials/ChemicalBistables/doseResponse.py
-./../tutorials/ChemicalBistables/simpleBis.py
-./../tutorials/ChemicalBistables/mapkFB.py
 ./../tutorials/ChemicalBistables/findSteadyState.py
-./../tutorials/ExcInhNetCaPlasticity/ExcInhNet_HigginsGraupnerBrunel2014.py
-./../tutorials/ExcInhNet/ExcInhNet_Ostojic2014_Brunel2000.py
-./../tutorials/ChemicalOscillators/slowFbOsc.py
-./../tutorials/ChemicalOscillators/repressillator.py
+./../tutorials/ChemicalBistables/mapkFB.py
+./../tutorials/ChemicalBistables/simpleBis.py
+./../tutorials/ChemicalBistables/strongBis.py
 ./../tutorials/ChemicalOscillators/relaxationOsc.py
-./../symcomp/symcomp.py
-./../symcomp/symcomp_readcell.py
-./../squid/squid.py
-./../squid/squid_setup.py
+./../tutorials/ChemicalOscillators/repressillator.py
+./../tutorials/ChemicalOscillators/slowFbOsc.py
+./../tutorials/ExcInhNet/ExcInhNet_Ostojic2014_Brunel2000.py
+./../tutorials/ExcInhNetCaPlasticity/ExcInhNet_HigginsGraupnerBrunel2014.py
diff --git a/_travis/__temp__ b/_travis/__temp__
index f9d6c6b1..2639784b 100644
--- a/_travis/__temp__
+++ b/_travis/__temp__
@@ -1,6 +1 @@
-(0.942477796076938, 0.2827433388230814)
-('CuReadCell: 3 compartments, 0 channels, 0 others
-, dataIndex=2, path=/Msgs[0]/singleMsg[2]>)
-Vm saved to Vm.dat
-K conductance saved to gK.dat
-Na conductance saved to gNa.dat
+        .
\ No newline at end of file
diff --git a/_travis/deploy_gh_pages.py b/_travis/deploy_gh_pages.py
index 788b54c9..ecf7e86d 100755
--- a/_travis/deploy_gh_pages.py
+++ b/_travis/deploy_gh_pages.py
@@ -31,7 +31,11 @@ def write_to_file( filename, lines ):
         f.write( '\n'.join( lines ) )
 
 def create_static_site( ):
-    subprocess.call( [ 'jekyll', 'b' ], shell = False )
+    try:
+        subprocess.call( [ 'timeout', '240', 'jekyll', 'b' ], shell = False )
+    except Exception as e:
+        print( 'Failed to generate static pages' )
+        print( '\tError was %s' % e )
 
 def main( ):
     global failedTxt_
@@ -39,6 +43,5 @@ def main( ):
     create_static_site( )
 
 
-
 if __name__ == '__main__':
     main()
diff --git a/_travis/download_and_run_doqcs.sh b/_travis/download_and_run_doqcs.sh
new file mode 100755
index 00000000..9ce69a62
--- /dev/null
+++ b/_travis/download_and_run_doqcs.sh
@@ -0,0 +1,83 @@
+#!/usr/bin/env bash
+
+# Definitions of colors in bash
+RESTORE='\033[0m'
+
+RED='\033[00;31m'
+GREEN='\033[00;32m'
+YELLOW='\033[00;33m'
+BLUE='\033[00;34m'
+PURPLE='\033[00;35m'
+CYAN='\033[00;36m'
+LIGHTGRAY='\033[00;37m'
+
+LRED='\033[01;31m'
+LGREEN='\033[01;32m'
+LYELLOW='\033[01;33m'
+LBLUE='\033[01;34m'
+LPURPLE='\033[01;35m'
+LCYAN='\033[01;36m'
+WHITE='\033[01;37m'
+
+function coloredPrint
+{
+    case $1 in 
+        "WARN")
+            echo -e "[WARN] ${LRED} $2 ${RESTORE} $3"
+            ;;
+        "INFO")
+            echo -e "[INFO] ${LGREEN} $2 ${RESTORE} $3"
+            ;;
+        "ERROR")
+            echo -e "[ERROR] ${RED} $2 ${RESTORE} $3"
+            ;;
+        "DEBUG")
+            echo -e "[DEBUG] ${YELLOW} $2 ${RESTORE} $3"
+            ;;
+        "STEP")
+            echo -e "[STEP] ${BLUE} $2 ${RESTORE} $3"
+            ;;
+        "TODO")
+            echo -e "[TODO] ${CYAN} $2 ${RESTORE} $3"
+            ;;
+        *)
+            echo -e "[$1] $2 $3"
+            ;;
+    esac
+}
+
+coloredPrint "INFO" "Downloading DOQCS database silently"
+# Download all models.
+wget -q -A"*.g" -r https://doqcs.ncbs.res.in/database/simfile/
+coloredPrint "INFO" "Done downloading"
+
+echo '' > __UNCLEAN__DOQCS__
+MODELS=`find . -type f -name "*.g"`
+for _model in ${MODELS}; do
+    echo "===================================================================="
+    coloredPrint "INFO" "Running $_model for 1 sec"
+    T1=$(date +%s.%N)
+    OUT=$(timeout 10 python -c "
+import moose
+moose.loadModel( '${_model}', '/model', 'gsl' )
+moose.reinit( )
+moose.start( 1 )
+")
+    T2=$(date +%s.%N)
+    DT=$(echo "$T2-$T1" | bc)
+    OUTTRIMMED=`echo $OUT | xargs`
+    coloredPrint "INFO" "TOOK $DT seconds to run 1 sec."
+    if [[ ! -z $OUTTRIMMED ]]; then 
+        coloredPrint "WARN" "$_model did not load/run cleanly"
+        echo "[] ${_model} \n" >> __UNCLEAN__DOQCS__
+        echo "\`\`\`" >> __UNCLEAN__DOQCS__ 
+        echo "$OUTTRIMMED" >> __UNCLEAN__DOQCS__ 
+        echo "\n\`\`\`" >> __UNCLEAN__DOQCS__ 
+        echo $OUTTRIMMED
+    else
+        coloredPrint "INFO" "$_model loaded just fine. We did NOT check output results"
+    fi
+done
+
+coloredPrint "INFO" "Following scripts did not run cleanly"
+cat __UNCLEAN__DOQCS__
diff --git a/_travis/index.md b/_travis/index.md
index c2da132d..ea4e052c 100644
--- a/_travis/index.md
+++ b/_travis/index.md
@@ -321,3 +321,4 @@ The final element.
       import networkx as nx
   ImportError: No module named networkx
 ```
+# Following scripts failed 
diff --git a/_travis/run_scripts.sh b/_travis/run_scripts.sh
index ffe27fe2..5842fe00 100755
--- a/_travis/run_scripts.sh
+++ b/_travis/run_scripts.sh
@@ -26,7 +26,7 @@ if [ ! -f $MATPLOTRC ]; then
     exit
 fi
 
-TIMEOUT=10
+TIMEOUT=${1:-60}     # default timeout is 60 secs.
 NTHREADS=4
 for f in `cat ./TORUN`; do
     d=`dirname $f`
@@ -50,7 +50,7 @@ for f in `cat ./TORUN`; do
             echo "|| Timed-out status: $status" 
             echo "- [ ] $f" >> $BLACKLISTED
             sed -i 's/^/\ \ /' $TEMP
-            printf "\n\`i\`\`\n" >> $BLACKLISTED 
+            printf "\n\`\`\`\n" >> $BLACKLISTED 
             cat $TEMP >> $BLACKLISTED 
             printf "\`\`\`\n" >> $BLACKLISTED 
         else                                    # Failed
@@ -65,12 +65,10 @@ for f in `cat ./TORUN`; do
         fi
     ) & 
 done
-wait
 
 # Auto deploy to README.md file
-python ./deploy_gh_pages.py || echo "failed to generated site"
+python ./deploy_gh_pages.py 
 
-wait
 echo "Following scripts were successful"
 cat $SUCCEEDED
 
@@ -87,5 +85,3 @@ if [ -f $FAILED ]; then
     cat $FAILED
     exit 1
 fi
-
-
-- 
GitLab