diff --git a/CMakeLists.txt b/CMakeLists.txt
index 7d5d25f7113bb303244a2e85d91a8e9dc9403654..9f0268ea45b523fa87998935464b0d47e96fac0b 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -15,15 +15,26 @@ include(CheckCXXCompiler.cmake)
include(CheckIncludeFileCXX)
include(FindPkgConfig)
-# Set moose version
-# Get the latest abbreviated commit hash of the working branch
-execute_process(
- COMMAND git describe --tags --long
- WORKING_DIRECTORY ${CMAKE_SOURCE_DIR}
- OUTPUT_VARIABLE GIT_VERSION_OUTPUT
- OUTPUT_STRIP_TRAILING_WHITESPACE
-)
-add_definitions( -DMOOSE_VERSION="${GIT_VERSION_OUTPUT}")
+# If from command line, version info is not passed, use the git to generate a
+# version file. If GIT fails, use the previous known version.
+set(VERSION_FILE ${CMAKE_SOURCE_DIRECTORY}/VERSION)
+find_program(GIT_EXEC "git")
+message( STATUS "Looking for git ${GIT_EXEC}" )
+if( (NOT VERSION) AND GITEXEC)
+ execute_process(
+ COMMAND ${GIT_EXEC} describe --tags --long
+ WORKING_DIRECTORY ${CMAKE_SOURCE_DIR}
+ OUTPUT_VARIABLE GIT_VERSION_OUTPUT
+ OUTPUT_STRIP_TRAILING_WHITESPACE
+ )
+ file(WRITE ${VERSION_FILE} ${GIT_VERSION_OUTPUT})
+ add_definitions( -DMOOSE_VERSION="${GIT_VERSION_OUTPUT}")
+elseif( (NOT VERSION) AND (NOT GIT_EXEC) )
+ file( READ ${VERSION_FILE} GIT_VERSION_OUTPUT )
+ add_definitions( -DMOOSE_VERSION="${GIT_VERSION_OUTPUT}")
+else()
+ add_definitions( -DMOOSE_VERSION="${VERSION}")
+endif( )
# This snippet is from LLVM project.
@@ -235,7 +246,7 @@ ELSE(HDF5_STATIC_HOME)
pkg_check_modules(HDF5 hdf5)
if(NOT HDF5_FOUND)
message(STATUS "pkg-config could not find hdf5. fallback to default")
- find_package(HDF5 COMPONENTS CXX HL)
+ find_package(HDF5 COMPONENTS CXX HL REQUIRED)
endif()
endif(HDF5_STATIC_HOME)
@@ -416,6 +427,7 @@ if(MACOSX)
target_link_libraries(libmoose
${SYSTEM_SHARED_LIBS}
+ ${CMAKE_DL_LIBS}
)
ELSE(MACOSX)
target_link_libraries(libmoose
@@ -432,9 +444,9 @@ add_dependencies(moose.bin libmoose)
# This target is only for testing purpose. It links to libmoose.
if(CMAKE_VERSION VERSION_LESS "2.8.0")
message(STATUS "Using a fix for cmake ( < 2.8)")
- target_link_libraries(moose.bin PUBLIC moose)
+ target_link_libraries(moose.bin PUBLIC moose ${CMAKE_DL_LIBS})
ELSE()
- target_link_libraries(moose.bin LINK_PUBLIC moose)
+ target_link_libraries(moose.bin LINK_PUBLIC moose ${CMAKE_DL_LIBS})
ENDIF()
######################### BUILD PYMOOSE ########################################
diff --git a/README.md b/README.md
index b57d39f7a8a69b43df9501d0c2ec09b721632d1a..bc315faa3019c539e5ac98600582dd8273745e83 100644
--- a/README.md
+++ b/README.md
@@ -1,8 +1,6 @@
[](https://travis-ci.org/BhallaLab/moose-core)
-This is core computational engine of [MOOSE simulator](https://github.com/BhallaLab/moose). This repository can be
-used to build the lasest python interface of MOOSE simulator. For more details
-see https://github.com/BhallaLab/moose/blob/master/README.md
+This is the core computational engine of [MOOSE simulator](https://github.com/BhallaLab/moose). This repository contains
+C++ codebase and its python interface. For more details about MOOSE simulation, see https://github.com/BhallaLab/moose/blob/master/README.md
-If you want to build `moose-python` using this repository, follow instructions given
-in https://github.com/BhallaLab/moose-core/blob/master/INSTALL.md file.
+This repository is sufficient for using MOOSE as python module. If you want to build `moose-python` using this repository, follow instructions given here at https://github.com/BhallaLab/moose-core/blob/master/INSTALL.md .
diff --git a/basecode/SparseMatrix.h b/basecode/SparseMatrix.h
index 986e3e83a0e2563c293c9722f350113ba975aab9..88d2681c65fd06f8a5f5479d348606f247038905 100644
--- a/basecode/SparseMatrix.h
+++ b/basecode/SparseMatrix.h
@@ -360,6 +360,7 @@ public:
return entry.size();
}
+#if 0
void rowOperation( unsigned int row, unary_function< T, void>& f )
{
assert( row < nrows_ );
@@ -376,6 +377,7 @@ public:
for ( i = N_.begin() + rs; i != end; ++i )
f( *i );
}
+#endif
/**
* Adds a row to the sparse matrix, must go strictly in row order.
diff --git a/pymoose/CMakeLists.txt b/pymoose/CMakeLists.txt
index e9136a08fe633ab056385e78c14a6a1f306bc7ee..bb369b44fcb3081bb18fe65d9fc494915d40cf79 100644
--- a/pymoose/CMakeLists.txt
+++ b/pymoose/CMakeLists.txt
@@ -13,15 +13,12 @@ set(PYMOOSE_SRCS
add_library( _moose MODULE ${PYMOOSE_SRCS} )
set(PYMOOSE_OUTPUT_DIRECTORY "${CMAKE_BINARY_DIR}/python/moose")
-
-find_package( PythonInterp REQUIRED )
-
-#execute_process(COMMAND
-# ${PYTHON_EXECUTABLE} "-c 'try: import importlib.machinery; print(importlib.machinery.EXTENSION_SUFFIXES[0])
-#except Exception: pass'"
-# OUTPUT_VARIABLE PYTHON_SO_EXTENSION
-# )
-#message( STATUS "Python so extension ${PYTHON_SO_EXTENSION}" )
+EXEC_PROGRAM(${PYTHON_EXECUTABLE}
+ ARGS "-c 'try: import importlib.machinery; print(importlib.machinery.EXTENSION_SUFFIXES[0])
+except Exception: pass'"
+ OUTPUT_VARIABLE PYTHON_SO_EXTENSION
+ )
+message( STATUS "Python so extension ${PYTHON_SO_EXTENSION}" )
find_package(NumPy REQUIRED)
include_directories(${NUMPY_INCLUDE_DIRS})
diff --git a/python/moose/genesis/_main.py b/python/moose/genesis/_main.py
index 38c0492d6aa871477695d4fcafd5d66cea6fd6d3..65963cabf65f4f233c174c1856479e392c66b98f 100644
--- a/python/moose/genesis/_main.py
+++ b/python/moose/genesis/_main.py
@@ -588,7 +588,7 @@ def writePool(modelpath,f,volIndex,sceneitems):
color = getRandColor()
if textcolor == "" or textcolor == " ":
textcolor = getRandColor()
- print " trimPath",trimPath(p)
+ #print " trimPath",trimPath(p)
f.write("simundump kpool /kinetics/" + trimPath(p) + " 0 " +
str(p.diffConst) + " " +
str(0) + " " +
diff --git a/scripts/setup.cygwin.py b/scripts/setup.cygwin.py
deleted file mode 100644
index 57ce43d5ce7e274d9bcf990df0e3280f3a681b61..0000000000000000000000000000000000000000
--- a/scripts/setup.cygwin.py
+++ /dev/null
@@ -1,433 +0,0 @@
-# setup.py ---
-#
-# Filename: setup.py
-# Description:
-# Author: subha
-# Maintainer:
-# Created: Sun Dec 7 20:32:02 2014 (+0530)
-# Version:
-# Last-Updated: Wed Mar 2 12:23:55 2016 (-0500)
-# By: Subhasis Ray
-# Update #: 32
-# URL:
-# Keywords:
-# Compatibility:
-#
-#
-
-# Commentary:
-#
-#
-#
-#
-
-# Change log:
-#
-#
-#
-#
-# This program is free software; you can redistribute it and/or
-# modify it under the terms of the GNU General Public License as
-# published by the Free Software Foundation; either version 3, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-# General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program; see the file COPYING. If not, write to
-# the Free Software Foundation, Inc., 51 Franklin Street, Fifth
-# Floor, Boston, MA 02110-1301, USA.
-
-#
-#
-
-# Code:
-"""
-This scripts compiles moose using python distutils module. As of Sat
-Dec 27 14:41:33 EST 2014 , it works on cygwin 64 bit on Windows 7 with
-the latest packages installed. Also tested was Ubuntu 13.04.
-
-Pre-requisites:
-
-You need to have Python-dev, numpy, libxml-dev, gsl-dev and hdf5-dev
-libraries installed.
-
-libSBML needs to be downloaded, built and installed separately.
-
-"""
-
-import numpy as np
-
-CLASSIFIERS = ["Development Status :: 5 - Production/Stable",
- "Environment :: Console",
- "Intended Audience :: Science/Research",
- "License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)",
- "Operating System :: Microsoft :: Windows",
- "Operating System :: POSIX :: Linux",
- "Programming Language :: Python",
- "Topic :: Scientific/Engineering :: Bio-Informatics"]
-
-NAME='moose'
-DESCRIPTION = 'MOOSE is the Multiscale Object Oriented Simulation Environment'
-
-fid = open('README.md', 'r')
-long_description = fid.read()
-fid.close()
-idx = max(0, long_description.find('MOOSE is the'))
-idx_end = long_description.find('# VERSION')
-LONG_DESCRIPTION = long_description[idx:idx_end]
-
-URL = 'http://moose.ncbs.res.in'
-DOWNLOAD_URL = 'http://sourceforge.net/projects/moose/files/latest/download'
-LICENSE = "GPLv3"
-AUTHOR = '(alphabetically) Upinder Bhalla, Niraj Dudani, Aditya Gilra, Aviral Goel, GV Harsharani, Subhasis Ray and Dilawar Singh'
-PLATFORMS = "Linux, Windows/cygwin"
-VERSION = '3.0.1'
-
-BUILD_TARGET = 'moose._moose'
-SOURCES=['external/muparser/src/muParser.cpp',
- 'external/muparser/src/muParserBase.cpp',
- 'external/muparser/src/muParserTokenReader.cpp',
- 'external/muparser/src/muParserError.cpp',
- 'external/muparser/src/muParserCallback.cpp',
- 'external/muparser/src/muParserBytecode.cpp',
- 'basecode/consts.cpp',
- 'basecode/Element.cpp',
- 'basecode/DataElement.cpp',
- 'basecode/GlobalDataElement.cpp',
- 'basecode/LocalDataElement.cpp',
- 'basecode/Eref.cpp',
- 'basecode/Finfo.cpp',
- 'basecode/DestFinfo.cpp',
- 'basecode/Cinfo.cpp',
- 'basecode/SrcFinfo.cpp',
- 'basecode/ValueFinfo.cpp',
- 'basecode/SharedFinfo.cpp',
- 'basecode/FieldElementFinfo.cpp',
- 'basecode/FieldElement.cpp',
- 'basecode/Id.cpp',
- 'basecode/ObjId.cpp',
- 'basecode/global.cpp',
- 'basecode/SetGet.cpp',
- 'basecode/OpFuncBase.cpp',
- 'basecode/EpFunc.cpp',
- 'basecode/HopFunc.cpp',
- 'basecode/SparseMatrix.cpp',
- 'basecode/doubleEq.cpp',
- 'basecode/testAsync.cpp',
- 'basecode/main.cpp',
- 'biophysics/IntFire.cpp',
- 'biophysics/SpikeGen.cpp',
- 'biophysics/RandSpike.cpp',
- 'biophysics/CompartmentDataHolder.cpp',
- 'biophysics/CompartmentBase.cpp',
- 'biophysics/Compartment.cpp',
- 'biophysics/SymCompartment.cpp',
- 'biophysics/GapJunction.cpp',
- 'biophysics/ChanBase.cpp',
- 'biophysics/ChanCommon.cpp',
- 'biophysics/HHChannelBase.cpp',
- 'biophysics/HHChannel.cpp',
- 'biophysics/HHGate.cpp',
- 'biophysics/HHGate2D.cpp',
- 'biophysics/HHChannel2D.cpp',
- 'biophysics/CaConcBase.cpp',
- 'biophysics/CaConc.cpp',
- 'biophysics/MgBlock.cpp',
- 'biophysics/Nernst.cpp',
- 'biophysics/Neuron.cpp',
- 'biophysics/ReadCell.cpp',
- 'biophysics/SynChan.cpp',
- 'biophysics/NMDAChan.cpp',
- 'biophysics/Spine.cpp',
- 'biophysics/testBiophysics.cpp',
- 'biophysics/IzhikevichNrn.cpp',
- 'biophysics/DifShell.cpp',
- 'biophysics/Leakage.cpp',
- 'biophysics/VectorTable.cpp',
- 'biophysics/MarkovRateTable.cpp',
- 'biophysics/MarkovChannel.cpp',
- 'biophysics/MarkovGslSolver.cpp',
- 'biophysics/MatrixOps.cpp',
- 'biophysics/MarkovSolverBase.cpp',
- 'biophysics/MarkovSolver.cpp',
- 'biophysics/VClamp.cpp',
- 'biophysics/SwcSegment.cpp',
- 'biophysics/ReadSwc.cpp',
- 'builtins/Arith.cpp',
- 'builtins/Group.cpp',
- 'builtins/Mstring.cpp',
- 'builtins/Func.cpp',
- 'builtins/Function.cpp',
- 'builtins/Variable.cpp',
- 'builtins/InputVariable.cpp',
- 'builtins/TableBase.cpp',
- 'builtins/Table.cpp',
- 'builtins/Interpol.cpp',
- 'builtins/StimulusTable.cpp',
- 'builtins/TimeTable.cpp',
- 'builtins/Stats.cpp',
- 'builtins/SpikeStats.cpp',
- 'builtins/Interpol2D.cpp',
- 'builtins/HDF5WriterBase.cpp',
- 'builtins/HDF5DataWriter.cpp',
- 'builtins/NSDFWriter.cpp',
- 'builtins/testNSDF.cpp',
- 'builtins/testBuiltins.cpp',
- 'device/PulseGen.cpp',
- 'device/DiffAmp.cpp',
- 'device/PIDController.cpp',
- 'device/RC.cpp',
- 'diffusion/FastMatrixElim.cpp',
- 'diffusion/DiffPoolVec.cpp',
- 'diffusion/Dsolve.cpp',
- 'diffusion/testDiffusion.cpp',
- 'hsolve/HSolveStruct.cpp',
- 'hsolve/HinesMatrix.cpp',
- 'hsolve/HSolvePassive.cpp',
- 'hsolve/RateLookup.cpp',
- 'hsolve/HSolveActive.cpp',
- 'hsolve/HSolveActiveSetup.cpp',
- 'hsolve/HSolveInterface.cpp',
- 'hsolve/HSolve.cpp',
- 'hsolve/HSolveUtils.cpp',
- 'hsolve/testHSolve.cpp',
- 'hsolve/ZombieCompartment.cpp',
- 'hsolve/ZombieCaConc.cpp',
- 'hsolve/ZombieHHChannel.cpp',
- 'intfire/IntFireBase.cpp',
- 'intfire/LIF.cpp',
- 'intfire/QIF.cpp',
- 'intfire/ExIF.cpp',
- 'intfire/AdExIF.cpp',
- 'intfire/AdThreshIF.cpp',
- 'intfire/IzhIF.cpp',
- 'intfire/testIntFire.cpp',
- 'kinetics/PoolBase.cpp',
- 'kinetics/Pool.cpp',
- 'kinetics/BufPool.cpp',
- 'kinetics/ReacBase.cpp',
- 'kinetics/Reac.cpp',
- 'kinetics/EnzBase.cpp',
- 'kinetics/CplxEnzBase.cpp',
- 'kinetics/Enz.cpp',
- 'kinetics/MMenz.cpp',
- 'kinetics/Species.cpp',
- 'kinetics/ReadKkit.cpp',
- 'kinetics/WriteKkit.cpp',
- 'kinetics/ReadCspace.cpp',
- 'kinetics/lookupVolumeFromMesh.cpp',
- 'kinetics/testKinetics.cpp',
- 'ksolve/KinSparseMatrix.cpp',
- 'ksolve/ZombiePool.cpp',
- 'ksolve/ZombiePoolInterface.cpp',
- 'ksolve/ZombieBufPool.cpp',
- 'ksolve/ZombieReac.cpp',
- 'ksolve/ZombieEnz.cpp',
- 'ksolve/ZombieMMenz.cpp',
- 'ksolve/ZombieFunction.cpp',
- 'ksolve/VoxelPoolsBase.cpp',
- 'ksolve/VoxelPools.cpp',
- 'ksolve/GssaVoxelPools.cpp',
- 'ksolve/RateTerm.cpp',
- 'ksolve/FuncTerm.cpp',
- 'ksolve/Stoich.cpp',
- 'ksolve/Ksolve.cpp',
- 'ksolve/SteadyState.cpp',
- 'ksolve/Gsolve.cpp',
- 'ksolve/testKsolve.cpp',
- 'mesh/ChemCompt.cpp',
- 'mesh/MeshCompt.cpp',
- 'mesh/MeshEntry.cpp',
- 'mesh/CubeMesh.cpp',
- 'mesh/CylBase.cpp',
- 'mesh/CylMesh.cpp',
- 'mesh/NeuroNode.cpp',
- 'mesh/NeuroMesh.cpp',
- 'mesh/SpineEntry.cpp',
- 'mesh/SpineMesh.cpp',
- 'mesh/PsdMesh.cpp',
- 'mesh/testMesh.cpp',
- 'mpi/PostMaster.cpp',
- 'mpi/testMpi.cpp',
- 'msg/Msg.cpp',
- 'msg/DiagonalMsg.cpp',
- 'msg/OneToAllMsg.cpp',
- 'msg/OneToOneMsg.cpp',
- 'msg/SingleMsg.cpp',
- 'msg/SparseMsg.cpp',
- 'msg/OneToOneDataIndexMsg.cpp',
- 'msg/testMsg.cpp',
- 'pymoose/moosemodule.cpp',
- 'pymoose/mfield.cpp',
- 'pymoose/vec.cpp',
- 'pymoose/melement.cpp',
- 'pymoose/test_moosemodule.cpp',
- 'randnum/mt19937ar.cpp',
- 'sbml/MooseSbmlWriter.cpp',
- 'sbml/MooseSbmlReader.cpp',
- 'scheduling/Clock.cpp',
- 'scheduling/testScheduling.cpp',
- 'shell/Shell.cpp',
- 'shell/ShellCopy.cpp',
- 'shell/ShellThreads.cpp',
- 'shell/LoadModels.cpp',
- 'shell/SaveModels.cpp',
- 'shell/Neutral.cpp',
- 'shell/Wildcard.cpp',
- 'shell/testShell.cpp',
- 'signeur/Adaptor.cpp',
- 'signeur/testSigNeur.cpp',
- 'synapse/SynHandlerBase.cpp',
- 'synapse/SimpleSynHandler.cpp',
- 'synapse/STDPSynHandler.cpp',
- 'synapse/Synapse.cpp',
- 'synapse/STDPSynapse.cpp',
- 'synapse/testSynapse.cpp',
- 'utility/strutil.cpp',
- 'utility/types.cpp',
- 'utility/setupenv.cpp',
- 'utility/numutil.cpp',
- 'utility/Annotator.cpp',
- 'utility/Vec.cpp',
- 'benchmarks/benchmarks.cpp',
- 'benchmarks/kineticMarks.cpp'
- ]
-
-INCLUDE_DIRS=['/usr/include',
- '/usr/local/include',
- np.get_include(),
- '.',
- 'external/muparser/include',
- 'basecode',
- 'biophysics',
- 'builtins',
- 'device',
- 'diffusion',
- 'hsolve',
- 'intfire',
- 'kinetics',
- 'kk',
- 'ksolve',
- 'mesh',
- 'mpi',
- 'msg',
- 'pymoose',
- 'randnum',
- 'sbml',
- 'scheduling',
- 'shell',
- 'signeur',
- 'synapse',
- 'utility']
-
-LIBRARIES = ['gsl'
- , 'gslcblas' # required to avoid undefined refs on import
- , 'hdf5'
- , 'sbml'
- , 'hdf5_hl' # required to avoid undefined refs on import
- ]
-
-LIBRARY_DIRS = ['/usr/lib64', '/usr/lib', '/usr/local/lib']
-
-DEFINE_MACROS = [('USE_GSL', None),
- ('USE_HDF5', None),
- ('NDEBUG', None),
- ('USE_NUMPY', None),
- ('H5_NO_DEPRECATED_SYMBOLS', None),
- ('PYMOOSE', None),
- ('USE_SBML', None),
- ('USE_HDF5', None)]
-
-EXTRA_LINK_ARGS = ['-L/usr/lib64', '-Wl,-R/usr/lib64'] # distutils disregards everything in LIBRARY_DIRS except /usr/local/lib, hence this
-PACKAGES = ['moose', 'moose.neuroml']
-PACKAGE_DATA = {'moose': ['LICENSE', 'README.md']} #, 'mgui': ['icons/*', 'colormaps/*', 'bioModels/*']}
-REQUIRES = ['numpy'] #, 'gsl', 'hdf5', 'libsbml'] # using full-dependency
-# python-libsbml, although available on PyPI, does not build with pip
-# install and gsl is a C library. The links are just for informing the
-# users.
-DEPENDENCY_LINKS = ['git+git://git.savannah.gnu.org/gsl.git',
- 'svn+svn://svn.code.sf.net/p/sbml/code/trunk']
-INSTALL_REQUIRES = None # "requirements.txt"
-EXTRAS_REQUIRE = {} #['matplotlib', 'PyQt4', 'suds']
-
-setup_info = dict(
- name=NAME,
- description=DESCRIPTION,
- long_description=LONG_DESCRIPTION,
- url=URL,
- download_url=DOWNLOAD_URL,
- license=LICENSE,
- classifiers=CLASSIFIERS,
- author=AUTHOR,
- platforms=PLATFORMS,
- version=VERSION,
- packages=PACKAGES,
- package_data=PACKAGE_DATA,
- requires=REQUIRES,
- package_dir={'': 'python'},
- #scripts=SCRIPTS,
-)
-
-
-## The following monkey patch allows parallel compilation of the C++
-## files Taken from here: From here:
-## http://stackoverflow.com/questions/11013851/speeding-up-build-process-with-distutils
-##
-## Also, if you are rerunning setup.py after checking out a few
-## changes, consider using cccache as suggested in the above discussion
-## to avoid recompiling every file.
-##
-## monkey-patch for parallel compilation
-##
-# def parallelCCompile(self, sources, output_dir=None, macros=None, include_dirs=None, debug=0, extra_preargs=None, extra_postargs=None, depends=None):
-# # those lines are copied from distutils.ccompiler.CCompiler directly
-# macros, objects, extra_postargs, pp_opts, build = self._setup_compile(output_dir, macros, include_dirs, sources, depends, extra_postargs)
-# cc_args = self._get_cc_args(pp_opts, debug, extra_preargs)
-# # parallel code
-# N=4 # number of parallel compilations
-# import multiprocessing.pool
-# def _single_compile(obj):
-# try: src, ext = build[obj]
-# except KeyError: return
-# self._compile(obj, src, ext, cc_args, extra_postargs, pp_opts)
-# # convert to list, imap is evaluated on-demand
-# list(multiprocessing.pool.ThreadPool(N).imap(_single_compile,objects))
-# return objects
-
-# import distutils.ccompiler
-# distutils.ccompiler.CCompiler.compile=parallelCCompile
-
-## Monkey-patch ends here.
-
-try:
- from setuptools import setup
- from setuptools.extension import Extension
- setup_info['install_requires'] = INSTALL_REQUIRES
- setup_info['extras_require'] = EXTRAS_REQUIRE
- setup_info['dependency_links'] = DEPENDENCY_LINKS
-except ImportError:
- from distutils.core import setup, Extension
-
-moose_module = Extension(
- BUILD_TARGET,
- sources=SOURCES,
- include_dirs=INCLUDE_DIRS,
- libraries=LIBRARIES,
- library_dirs=LIBRARY_DIRS,
- runtime_library_dirs=LIBRARY_DIRS,
- define_macros=DEFINE_MACROS,
- extra_link_args=EXTRA_LINK_ARGS
-)
-print((moose_module.runtime_library_dirs))
-
-setup_info['ext_modules'] = [moose_module]
-setup(**setup_info)
-
-
-
-#
-# setup.py ends here