diff --git a/docs/doxygen/Doxyfile b/docs/doxygen/Doxyfile
index 687644579c082eaa7409009649c28e4a4a1a33d1..ab7cf523dedbb56db6740e3624f24d786a389298 100644
--- a/docs/doxygen/Doxyfile
+++ b/docs/doxygen/Doxyfile
@@ -772,7 +772,6 @@ INPUT                  = ../../moose-core/basecode 	  \
                          ../../moose-core/msg                \
                          ../../moose-core/randnum            \
                          ../../moose-core/pymoose            \
-                         ../../moose-core/sbml               \
                          ../../moose-core/scheduling         \
                          ../../moose-core/shell              \
                          ../../moose-core/signeur            \
diff --git a/docs/images/func.png b/docs/images/func.png
index 12480d596818ea6e3e59cff885742ca5ced18c07..0ba5b26eef09d6deb74905e7e4df55f2751685c7 100644
Binary files a/docs/images/func.png and b/docs/images/func.png differ
diff --git a/docs/user/images/rdes10_CaSpread.png b/docs/images/rdes10_CaSpread.png
similarity index 100%
rename from docs/user/images/rdes10_CaSpread.png
rename to docs/images/rdes10_CaSpread.png
diff --git a/docs/user/images/rdes10_CaTimecourse.png b/docs/images/rdes10_CaTimecourse.png
similarity index 100%
rename from docs/user/images/rdes10_CaTimecourse.png
rename to docs/images/rdes10_CaTimecourse.png
diff --git a/docs/user/images/rdes3.1_axon.png b/docs/images/rdes3.1_axon.png
similarity index 100%
rename from docs/user/images/rdes3.1_axon.png
rename to docs/images/rdes3.1_axon.png
diff --git a/docs/user/images/rdes3.2_myelinated_axon.png b/docs/images/rdes3.2_myelinated_axon.png
similarity index 100%
rename from docs/user/images/rdes3.2_myelinated_axon.png
rename to docs/images/rdes3.2_myelinated_axon.png
diff --git a/docs/user/images/rdes2_passive_squid.png b/docs/user/images/rdes2_passive_squid.png
deleted file mode 100644
index 61c34829bebded354e4d99bb80581daf1ee1f22b..0000000000000000000000000000000000000000
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diff --git a/docs/user/images/rdes3_squid.png b/docs/user/images/rdes3_squid.png
deleted file mode 100644
index e2f3a6626cae9d28806b7556a4523bd680c72d1a..0000000000000000000000000000000000000000
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diff --git a/docs/user/images/rdes4_osc.png b/docs/user/images/rdes4_osc.png
deleted file mode 100644
index aff42219c01c06323063cff98d480ecfeed3fb2e..0000000000000000000000000000000000000000
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diff --git a/docs/user/images/rdes5_reacdiff.png b/docs/user/images/rdes5_reacdiff.png
deleted file mode 100644
index 28727e5e385d87d980ad899405db172e57a05389..0000000000000000000000000000000000000000
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diff --git a/docs/user/images/rdes6_multiscale.png b/docs/user/images/rdes6_multiscale.png
deleted file mode 100644
index ea4795c93a126b84fe171879df1a7a1cc998eb5a..0000000000000000000000000000000000000000
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diff --git a/docs/user/images/rdes7_passive.png b/docs/user/images/rdes7_passive.png
deleted file mode 100644
index 0d00e176ffc1d9591b0ee3de560aaa982bb46735..0000000000000000000000000000000000000000
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diff --git a/docs/user/images/rdes8_active.png b/docs/user/images/rdes8_active.png
deleted file mode 100644
index 989372b50979dc6177ee4a030355f2e2530f1078..0000000000000000000000000000000000000000
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diff --git a/docs/user/images/rdes9_spiny_active.png b/docs/user/images/rdes9_spiny_active.png
deleted file mode 100644
index cb5e75b9ed5888007d829134f25e331127ace7ec..0000000000000000000000000000000000000000
Binary files a/docs/user/images/rdes9_spiny_active.png and /dev/null differ
diff --git a/docs/user/markdown/Kkit12Documentation.markdown b/docs/user/markdown/Kkit12Documentation.markdown
index d79d645c5b78d2948f888e679b26104428851846..39326d2e65c994ba06ef617467c1a38b5b58a6db 100644
--- a/docs/user/markdown/Kkit12Documentation.markdown
+++ b/docs/user/markdown/Kkit12Documentation.markdown
@@ -242,6 +242,7 @@ but they make the assumption that the **E.S** is in a quasi-steady-state with **
 Summation object can be used to add specified variable values. The variables can be input from pool object.
 
 *   **Icon**: This is **Σ** in the example image below. The input pools **'A'** and **'B'** connect to the **Σ** with blue arrows. The function ouput's to BuffPool
+![](../../images/func.png)
 
 ### [Model operations](#TOC)
 
diff --git a/docs/user/markdown/markdown2rst.py b/docs/user/markdown/markdown2rst.py
index 7544a450b92173af152ca43dc79692abb69d077b..37e7882adc9f153ef1e029c1099221f14e1c89fc 100644
--- a/docs/user/markdown/markdown2rst.py
+++ b/docs/user/markdown/markdown2rst.py
@@ -1,7 +1,7 @@
 import os
 import subprocess
 
-file_list = ["MooseGuiDocs","Kkit12Documentation","RdesigneurDocumentation"]
+file_list = ["MooseGuiDocs","Kkit12Documentation"]
 
 DOCUMENTATION_DESTINATION_DIR = '../GUI/'
 SOURCE_EXTENSION = '.markdown'
@@ -12,3 +12,15 @@ for filename in file_list:
     command = 'pandoc -s {0} -o {1}'.format(source_file, output_file)
     print(command)
     subprocess.call(command.split(' '))
+
+file_list = ["RdesigneurDocumentation"]
+DOCUMENTATION_DESTINATION_DIR = '../Rdesigneur/'
+SOURCE_EXTENSION = '.markdown'
+OUTPUT_EXTENSION = '.rst'
+for filename in file_list:
+    source_file = filename + SOURCE_EXTENSION
+    output_file = DOCUMENTATION_DESTINATION_DIR + filename + OUTPUT_EXTENSION
+    command = 'pandoc -s {0} -o {1}'.format(source_file, output_file)
+    print(command)
+    subprocess.call(command.split(' '))
+