From 53206f84b69d3127a34a915b1580dcd73a593bd8 Mon Sep 17 00:00:00 2001 From: Dilawar Singh <dilawars@ncbs.res.in> Date: Wed, 21 Jun 2017 17:31:27 +0530 Subject: [PATCH] Squashed 'moose-core/' changes from fe77059f98..2c3fe7516a 2c3fe7516a Merge branch 'master' into asiaszmek 9f3ffcb261 Merge commit 'e6e83b761e93923f3853512e1814a412296927a7' as 'moose-core' be87aea076 Deleted moose-core due to dirty history in upstream moose-core. 1051706f1a Merge commit '48fc9733220a09f3b5899c999226e664ae5188bc' 48fc973322 Squashed 'moose-examples/' changes from 2eb5fa888f..80169bcc5c 304173ccb1 Merge commit 'd27e942f2f8c0b1a3be34da0058ab374ac843400' d27e942f2f Squashed 'moose-core/' changes from 69e0354705..b096503233 0f74138261 Calcium hsolve (#218) fbf9dbd4d0 Fixes to bad-merging. 2ea8560eb9 Travis required changes after yesterday upgrade. 849103d0fd Merge commit '320e525a5a34fbd3f1cb572b6de38eca0c0876f0' 320e525a5a Squashed 'moose-gui/' changes from d282884250..49779ba730 7fe1c2e7fe Squashed 'moose-core/' changes from 2ecab963b2..69e0354705 faf993a19b Merge commit '7fe1c2e7fe0b0d1cbe153cefb10618f62fe107cb' edd901da06 Squashed 'moose-examples/' content from commit 2eb5fa888 be2d4ec3ef Merge commit 'edd901da062503717c40cddad23d69bf51782f08' as 'moose-examples' 423c47593e Removed moose-examples due to screwed up history with https://github.com/BhallaLab/moose-examples. 45f9e9b950 Squashed 'moose-core/' changes from b3b597f41..2ecab963b 7b366bcbbf Merge commit '45f9e9b95044109e30e5271090d60ee49925144a' 4c60725ddc Merge commit 'af3c29a4cff12f8572527cd79095d50d16c5da84' af3c29a4cf Squashed 'moose-core/' changes from ef066f704..b3b597f41 60f3632e56 Fixes to allow moose module to be installed and imported (#220) 7ffff42d69 documentation branch merge request (#219) ec194c8a17 Documentation final PR (#217) 0318bd7e87 Added python-lxml in dependencies. 226eb63069 Added --git-ignore-branch option. 42cb3feb4b Fixes in timeformat of debina changelog. The debian parser has gotten very strict about formatting of time. 94e2ff2c7d git buildpackage is renamed to gbp buildpackage. 0fcf82524c Using dist:trusty by default on travis. Recent updated in travis Trusty's image has made installing openscenegraph-dev error-prone. 18ec171ee2 Fixes to launcher. 6d0693d752 Changes from PR by Malav. 6e6051e44f Gettting docs from Malav pull request. Pull request is revered back. a843c585ef Local .gitignore. If exists, merge please! 813f7bc44f Adding doxygen file. 0cf3a18cb2 Adding rst files. 24ebac50cb All changes from previous repository. No new file is added here. 0f6f5d2769 Squashed 'moose-core/' changes from 6099142d6..ef066f704 ec32a6f5be Merge commit '0f6f5d2769ab429a3bbb940c9add228981d9ab98' 57ffc86433 Adding local changes. cc8759c27c Squashed 'moose-core/' changes from 4f391e1..6099142 a9798ffc2f Merge commit 'cc8759c27ce6d235ae6bd8d2484c79841619b7c9' b2fda56242 Added missing Revision macro file from chamcham branch. cc540278db Merge commit 'b4d20b7c10a5e94e4c10f8cce5f8da428cf1c7b6' b4d20b7c10 Squashed 'moose-core/' changes from eb878dd..4f391e1 2b8d61d35a Fixed revision issue. 5805bdf3a8 Added missing file after merging branches. 64799ebd03 Travis fixes. b8673be334 Fixed to cmake which were causing launchpad failure. 5ace57bada Cmake changes from chamcham branch. Build for launchpad. 7bef269a05 Do not copy VERSION file for python. Lets find a better and more portable solution. 2ebd41f989 Updated default version in setup.py file. 25a907eb71 Squashed 'moose-gui/' changes from 6104940..d282884 224487f453 Merge commit '25a907eb71edd2a7dd05d7c7c3f59b1bd3e1965a' 02fcf72130 Merge commit 'c37dddbf65b6085ebe8c9dc29d9e0a106b3255d8' c37dddbf65 Squashed 'moose-examples/' changes from 7054325..8c7c00c 0ff1b77a6f Squashed 'moose-core/' changes from 270c880..eb878dd 2bd23400bc Merge commit '0ff1b77a6fa7152903e2a3f8e0fbe658fb314e5c' b498916c5a VERSION string is fixed to today's date if not given. 8287330a1e Enable chamcham branch on travis. 9cb49e27e8 Fixed for snappy builds. debc6e63d2 Let cmake find path of Python.h file. 2ae2b20900 Merge commit '4489d15994d2ab9ab2448afd937ba13c65a9907d' 4489d15994 Squashed 'moose-core/' changes from 669b981..270c880 9e88854802 More changes to snap. Needs to add Python.h path [skip ci] 0d29983a48 On master branch, the snap channel is edge [skip ci]. 70fbb7079e launched script is now snap friendly. 503c9ade98 Removed <<<<, === and >>> from improper merge. de6596514c Merge commit '349abe7e0132111737153bf2d4b1692d091b5ea8' 349abe7e01 Squashed 'moose-examples/' changes from 69062d9..7054325 7088b0c50e Added snapcraft file. de4e03f584 added deleted files 7cb7cc7a6e temp deleted 0015fd23ea Resolved merge conflict 1573324537 temp deletion 6ed2f7019c Squashed 'moose-examples/' changes from 7318878..69062d9 f890fa0837 deleted unwanted files and added new files 0e491aa415 Squashed 'moose-examples/' changes from 8038f56..7318878 ccf3e614d5 Squashed 'moose-core/' changes from c15c1b1..669b981 593b3f731c Merge commit 'ccf3e614d567c467835861cf3d52fe294f7ec4f1' e565756c91 Squashed 'moose-gui/' changes from 2a1f94f..6104940 50279060db Merge commit 'e565756c912bf1c4638873bda5fccbe9bdf47b7b' c50a82a943 VERSION conflict file is added 24dea42663 Squashed 'moose-core/' changes from 434c478..c15c1b1 ae611181ff Create LICENCE 83152c5a23 Fixed assert by Upi 0e5351e934 Merge branch 'master' of github.com:BhallaLab/moose 9f65372984 Removed generated doc from source tree. 0208d06ad8 Merge pull request #210 from malav4994/master ae36bc57e1 little bit change in docs/ 55a2f09e20 Merge commit '628138cb9426ec4c1dcf98d3ef8a5108d0ba783b' 628138cb94 Squashed 'moose-core/' changes from f3d0477..434c478 acafba2c16 Merge commit 'edb505a7e50c81b5b9b7c3f4ae9e259da3da8a90' edb505a7e5 Squashed 'moose-gui/' changes from 2ba6bd5..2a1f94f fe2d8940d5 Deleted temp files. 88e9ca95ec Merge pull request #208 from malav4994/master 12b0719902 khali khali 30a89548fa to put documentation in BhallaLab/moose 2936ba8537 Merge commit '7c71305865364216fd1a00b4a2498da44f0cbb0b' 7c71305865 Squashed 'moose-core/' changes from 14e2d78..f3d0477 f2b5cfdc41 Merge pull request #206 from asiaszmek/difshell-tests 3618469db8 Script testing DifShells ac0b800226 Merge commit 'a5122cfb6dd82f1a831f64d1fb1a29a7d1392334' a5122cfb6d Squashed 'moose-core/' changes from 1b5b9a9..14e2d78 2edfcf1516 Fixed docstring on example. f95d827b79 Merge commit 'f0fd0e53a20a237df81c8fc6615d81e66cf270ee' f0fd0e53a2 Squashed 'moose-gui/' changes from e49ca7d..2ba6bd5 3324aa5a3a Merge commit '07ef36e1766130660028959cf5a93424ba270136' 07ef36e176 Squashed 'moose-examples/' changes from ed3253d..8038f56 5bceacfe2b Squashed 'moose-core/' changes from 7c9fe23..1b5b9a9 d92afeebdf Merge commit '5bceacfe2bebf128999e0565521b7e49ff2f6f25' 1effa9572c Merge branch 'asiaszmek-difshell' bb650ae833 Merge branch 'difshell' of https://github.com/asiaszmek/moose into asiaszmek-difshell 6aa27cac6f Change order of operations to slightly improve accuracy bc28246bb2 Small changes to make the code more alike genesis and other moose objects a4d7de8f9c Difshells and difbuffers initialize close to equilibrium f6805f1751 Add forgotten setting of helper variables to zero after calculations f32bef60a5 Add state in t(i-1) a7bf1414c0 Fix wrong definitions 118484eccc Fix errors in volume calculation 08f2e43a2e Indentation d0c7b374c5 Add MMPump to scheduling and makefiles e5152fe3be Add MMPump to DifShell 91d10224d2 Implementation of MMPump 8cb32de5d6 Add ticks for DifBufferBase and DifShellBase a56de07145 Fix bugs: DifShell now compiles and seems to give correct results 4a99131d1d Fix a typo in zombify 7537d1c7e7 Rewrite DifShell. Inherit from DifShellBase 7b9b31746f Write base class for DifShell c4bcadef91 Indentation 8cd9616346 Implement exponential Euler for DifShell 5d2cb8a843 Move source messages to class. Correctly initialize Faraday's constant 41b15f2574 Move source messages to class 1a01448995 Make DifBuffer look more like other moose classes and fix ticks 8d67d85327 Add DifBuffer to clocks 2dbbc21495 Add DifBuffer to compilation f411dc8eb2 Fix no ticks when initializing difshells warning 65569a6dd7 Remove useless variable e4146c125d Reintroduce an old version of DifBuffer from moose 2feb865c6e Merge branch 'master' of github.com:BhallaLab/moose f6df6f4d23 moose-core is tested on osx. No need to test this repo with osx. a853687dd0 Update index.rst d922383862 Merge branch 'master' of github.com:BhallaLab/moose 88562db03e - Removed multiple conf.py file. Only a single file at top-level directory. If neccessary, this can be symlinked to other folders as well. - Cleanup in index.rst to make sure whole document build as whole one. - Cleanup toplevel index.rst. Removed non-existing entries. - Section numbers is currently disabled. It can be enabled in top-level `index.rst` file by putting `:numbered:` in ::toc. 10f313d371 Removed multiple conf.py file. Only a single file at top-level directory. If neccessary, this can be symlinked to other folders as well. Cleanup in index.rst to make sure whole document build as whole one. be6e7176f9 Moved to cmake folder. b94543d414 Merge commit '0d12ebb03bf7c3efce4b08bcbe40ed82137fa202' 0d12ebb03b Squashed 'moose-core/' changes from 3f8c345..7c9fe23 51b53b529c master branch. 4d697e961a Fixes to BhallaLab/moose#204. ea50d83b1f BhallaLab/moose#204. c0e1ef95d5 documentation gets picked up for some of the python class d184c46d07 Set theme jekyll-theme-minimal 5304fbe84a Update index.rst 25a35d0809 Instead of moosegui, install moose. 9aa87c847a Do not run gui tests. f71343d42b Merge commit '04170cb4d5a69b48041a12229181d7e4d2bf5afd' 04170cb4d5 Squashed 'moose-core/' changes from bd86fb5..3f8c345 028b5cfc3f Updated. 1c9726ca02 Fixed, python2 incompatible print function use. 1aeca36e86 Some updates to fix static hdf5 libraries. a844183e25 Added missing file. 46ca6d5265 This project build pymoose, gui and its examples. TODO: ctest must check each example as well. 6baece11a5 Builds whole moose project. 625917a721 Added some sanity tests for both moose and moogli. 00a12e20a3 Squashed 'moose-examples/' changes from d7e9a97..ed3253d bb39350771 Merge commit '00a12e20a32db0c1e553dcea1b1b78d6158afd60' 1680bac685 Squashed 'moose-core/' changes from 6a6bcc1..bd86fb5 0e3c74d8f3 Merge commit '1680bac6852381ac9e46c60bd501b80ad58a6fbf' ba8772f185 Changes to cmake file so that we can find the correct static library. 6bc4ced85f Fix a development warning in cmake. 8b3f4807c1 Removing shebangs from the python scripts. These scripts were never called as standalone executables. 03d15d003f Since none of the following files was executable, removed shebangs. 7ab6aa493d Removed shebangs from python scripts. e3c8a18861 Fixed the address of Free Software Foundation Inc. 2f9a05971d A test commit to package hdf5-devel BhallaLab/moose#201. 85a3b245d4 To run this file libsbml needs to be installed and not compile with moose as its at python level 909169d722 Merge branch 'master' of https://github.com/BhallaLab/moose c5e7e5a3b9 Update README.md 15d6475dca Fixed another typo in FindGSL. Library list was converted to string. efd282dfcb Fixed a typo in FindGSL file. 10e3fee196 sourceforge mailing is depreciated 68ca4c9b32 FindGSL also looks for GSL_VERSION now. 079927d7a9 Fixes to travis failure. cbee16296c Update index.rst eeb6e80d46 Updated CMake and FindGSL. 284b9e3c93 Fixes to extension bug. 7a560392d1 duplicate rdesigneur folder exists one level above 28caf3bb5a removing duplicate folder da83bc1f0e rearrange python documentation as per website 64ec9591b3 Some fixes to static library dependencies [skip ci] 3bb481d543 Added script to merge changes from this repo to all subtrees. [ skip ci ] 4286c43659 Cleanup in cmake files. Using bash scripts to generate subprojects. This way I can handle environment variables cleanly. 21f5e65ea9 Clean up in README file and deleted unwanted files and folders ff37cca1f2 Merge commit '76b621' 76b621c05e New hdf5 version generates static library with different name. Fix it. 78fe32b726 clean up 6f5289fc16 removing rst file which can be generated from "markdown" folder 474cbb2694 deleting this folder fe82fab1a2 Merge branch 'master' of https://github.com/BhallaLab/moose 7613fc1b7e Doxygen_1.8.9 is added which should be used to generate doxygen files,Rdesigneur folder is creater under "user" folder and corrected index.rst file is updated, deleted "html" folder,Rdesigneur markdown file with correct date,"snippet " and "tutorial"folder is created with relevant files to generate html files f1d6aba37c This should pass on travis. d0a6060b97 Squashed 'moose-core/' changes from 9eeca0c..6a6bcc1 7143a53a25 Merge commit 'd0a6060b975540dedc0f455f49ea4357da479eec' b5a7c2e2a2 Squashed 'moose-core/' changes from 14cf2df..9eeca0c 15f18b908d Merge commit 'b5a7c2e2a2d7a1a5250ad20f8c43ac18910b7382' fef5e24cbf Merge commit '273124ec2f3f25e6af896ac0b3759bee2ee2e77a' 273124ec2f Squashed 'moose-core/' changes from 343cb02..14cf2df 7822c60b35 Merge commit '8bfef2e62f38d0660e71e43dc30081fc9004f811' 8bfef2e62f Squashed 'moose-core/' changes from ed5f015..343cb02 fb9fba5e07 Merge commit 'aca403470ae87f49782542a63c8dcc4649553369' aca403470a Squashed 'moose-gui/' changes from 1e5f537..e49ca7d 3c9138df91 Squashed 'moose-examples/' changes from 0494d05..d7e9a97 2f085e3ee8 Merge commit '3c9138df91552ccd74acb7dfe7264c0c2180b334' 6c8f20121f Squashed 'moose-core/' changes from c2c32b9..ed5f015 58de93dd43 Merge commit '6c8f20121ff0b38b0c47eb37aacef75ba5cb9acc' 9e7e1fa6f5 Update README.md 5bbb12f8fa clean up, all markdown files will be placed under docs/user/markdown, images under /docs/images one can use markdown2rst.py to convert Rdesigner,MooseGui and Kkit docs which places the file under docs/user/GUI and docs/user/Rdesigneur and further one can use makefile to convert to rst to html which will be placed under _build folder in respective folders 5bdccdaf9e various cleanup in doc folder d3dbb49e4e Cleanup in the images ad5e43e03f function is replaced with summatation fdca7481a9 Merge branch 'master' of github.com:BhallaLab/moose f54fffdeff Pass moose version from command line BhallaLab/moose#200 . eca66f7fde Update README.md b33e709634 Update README.md a77c09fa43 No need of dpkg and sbml c++. e5ac4a0117 Merge commit '96580978fd046d82b2545fdac8b72ea52bd4956c' 96580978fd Squashed 'moose-core/' changes from a15a538..c2c32b9 bcbc1c1acd Added documentation sent by Upi. e3fb24b362 Added documentation from Rahul. 7467592cb9 removed USE_SBML=1 from the file " 5fddb6d241 removed all libsbml dependency 66617caa6d Changed build number to match all gsl packages. This should fix the build. 223ce2faf9 Fixed the link of gsl binary package version 1.16. Later I should upgrade the build environment from precise to trusty. 459dc9cf1b Fixing the upstream link of gsl debian package. b53f9021b1 A test case test_sbml_support.py which inturn calls to write moosewriteSBML which needs networkx which is added as a dependency for travis 65960cdf80 fixed broken path which was due to doc folder moved from moose-core to moose 6b07347e5b update date correction 3cc1284159 update date correction 0c31b014cb Clean up in the document df31522a6a Added axon model and documentation for rdesigneur 1628fa037a Squashed 'moose-gui/' changes from 1ef13c9-1ef13c9 f00545567f Oops moment. Fixed the typo in compiler flag for apple-clang 0d09885138 updated apple-clang flags in compiler. Fix to missing symbols from stl. 2c8c4dcde9 Squashed 'moose-gui/' changes from c21a557..1e5f537 f68eadb5fd Merge commit '2c8c4dcde9cd7017665d2f7d4235d4621f29dc99' 5cf6177cb3 Squashed 'moose-gui/' changes from bc510df..c21a557 65698f84f5 Merge commit '5cf6177cb339d7db1c06fc4c459b9126c29ed186' d2a4eeed0e Merge branch 'master' of https://github.com/BhallaLab/moose 382e5d39c4 Fixing version. dbb2ab9941 Use rsync instead of cp. 3d82717f86 Merge branch 'master' of https://github.com/BhallaLab/moose 9a7917a135 better script. 2247ee17be Updated. Try on strudel. ca9c7ff84d Updated script. 5e5b17f8f2 Fixing scripts to build DMG file. 2fed9a35cd Added packaging script for mac. 63601c5b41 Added scripts to build packages for MaC. c8e99801ac Squashed 'moose-gui/' changes from a3d3a06..bc510df 498a2aee4e Merge commit 'c8e99801ac0aa037f31ab9b8e2a02f6fea4fd0ed' 2af833a02a Squashed 'moose-core/' changes from 1318029..a15a538 1eb469f648 Merge commit '2af833a02ab1ad4d1e9caf12efe7705e73fb2c32' c31c9eb8f2 Scripts to pull the subtree into moose working tree. e402660f83 Update index.rst ba5c43de40 Merge branch 'master' of github.com:BhallaLab/moose 61754bb92e Needs more cleaning. This is for testing how document looks on RTD. 9db929468d Added streamer class to list a83a2caf0c Fixed some more image links. f6be0690df Fixed author and date directive. Integrated with other docs. 930a795565 Added images. 7e7d77a39b Added Rdesigneur documentation also. 30f4f34291 Update index.rst 8637590a7e Merge branch 'master' of github.com:BhallaLab/moose 13ca5cc1c0 INstallation page is almost over. eb128ef193 Update INSTALL.md 66a50a0529 Update README.md 147301f662 Added links to issue in rst. b7416fbfe3 Update README.md 6db7335eea Merge branch 'master' of github.com:BhallaLab/moose 0e0b838c87 Fixed formatting and added issue page. 7856aa34ac Update .travis.yml b305d8865d Fixed formatting and added more install instructions. b732732097 Merge pull request #196 from BhallaLab/dilawar-patch-2 6f5ceea535 Some more changes to make formatting consistent with RST 7d9c3f8418 Update index.rst f890882588 Formatting can be fixed on github now. 6d3d849139 Fixed the link to documentation on RTD e9d20501fc Changes from md to rst d4ba03e091 Added markdown install instructions, need to update on github with proper rst formatting. 67fea2d376 Layed out the structure of documentation for installation, changelog, known_issues and release notes. 6b6828a242 Added missing file which should have installation instructions. 36c23d2e23 Merge branch 'master' of github.com:BhallaLab/moose 8012451a3f Enabling todo.ext with sphinx. 84cfe95d7f Fixed typo. Added a todo not. cd5ea17c1d deleted unneccessary file. dce53aa861 Some more rearranging to make sure the <no title> does not appear in final documentation. 266aec94f9 Rearraged documentation a bit to suit the latest directory sturcture. ed088fcb11 Few more changes for local build testing. ff03506005 Fixed a typo in readthedocs-pip-requirements.txt file. Added file with instruction to install. a49282d672 Added numpydoc as a dependency on rtd. f5515c921f Started template for building and installing moose. 9e4bc3214b Fixed logo path for latex latex build on rtd. 790a32dfc4 Moved docs to moose. Removed temp directory. aa2deb827e Adding docs from moose-core. a72f52bb6a Adding document folder to test building on read-the-docs. 7f43a2ecf8 typo in WITH_CUDA [skip ci] 008a3f19a0 Added /usr/lib64 to ldconfig. SBML installs its library to this non-standard path. edccf66360 Making test command empty. 7d355710db Passes on ghevar. d1d5740d07 Merge branch 'master' of github.com:BhallaLab/moose 1f4535a6e6 Don't run ctest before install. Needs to find a better way to integrate test. 79c420585f Update INSTALL.md 847cd59ce4 Update README.md bdf8b8c35e Update README.md b9d2394b1b Added file to install. a7eacd0c2e Updated readme file. 082ae66c9b Merge branch 'master' of github.com:BhallaLab/moose bcbd49a68a Issue #195. Using external project to simplify the maintainence. centos-6 has cmake 2.8 which is now the minimum version required to build moose. Revered back Makefile in moose-core. Update README.md Fixed indentation. 513ccd281c Update README.md 894f881e0f Update README.md 0cda31e263 Squashed 'moose-gui/' content from commit a3d3a06 694567944e Merge commit '0cda31e263c9fe2c346d1092679ece6118d48902' as 'moose-gui' e8f7e79cf2 Squashed 'moose-examples/' content from commit 0494d05 c376ead016 Merge commit 'e8f7e79cf22622cbeb2a1ae42890ec28c5a6c2b7' as 'moose-examples' 6b27e69e49 Squashed 'moose-core/' content from commit 1318029 64e5323b26 Merge commit '6b27e69e490e08191cf1f54bea6bf822a063e753' as 'moose-core' 658e541334 Added scripts to pull subtree. 0a90e72dc5 Removed submodules. Need to add subtree 8e0759fcc9 After package is built, run the post-package tests. #BhallaLab/moose#194 39a577d2ea Added python-nose as missing dependency. It shouldn't be there. I think it is needed to run python test d64ae69fe9 Merge branch 'master' of github.com:BhallaLab/moose be28ed8963 Don't check for gpg key and don't sign the package. This should fix the gpg key related exceptions. 47f92cf464 Don't pack libmoose.so. The lintian was complaining. libmoose.so is only used with moose.bin (for running unit-test in debug mode). f691dc8248 Do no install libmoose.so in package. Just install python interface and moosegui binary. f58259ce08 Added cdbs to build dependency Travis was failing 25ae322964 Added wget to dependencies Fixed formatting error in yml file. 48dd2bc5ff Install deb package instead of building from source code. --git-ignore-new to git-buildpackage. 98579ee99f Added two very basic tests. Just import moose and moogli. 44b05aa9be Merge branch 'master' of github.com:BhallaLab/moose d43d60e6ac Instead of building source code using cmake, build the debian package whenever there is a commit. 00c90e68c0 Added debian folder to create debian on travis. a7379219f2 Update README.md 63eab14841 I should add packaing script to this repo. Ideally each merge to this repo must be tested for packaging. 1898ed1c6a Test pacakging. 9f2113f227 Submodules updated. 86089da2d8 cleanup folder too 7c25eb2ecc cleanup in setting up the pythonpath after the scripts where moved from moose to moose/scripts 5f77e25d02 update-repository is moved from scripts to moose folder which pull the code from submodule recursive 88a089d618 - moved the port file to package repo. Removing it from here. - Initialize git lfs support to add large files to repo without increasing its size. af869d416d Moving various install related scripts to ./scripts folder. Instructions are to be written on INSTALL.md file on how to build using this repository. 6e0544b9b4 make clean is also need 1afe9e87c5 Cleaned up readme. Added link to wiki. 58a0ad6611 Updated submodules. 13dec2379c Each submodule gets its own portfile. 6acd3e97db Added port file. Needs to improve the long description. 31bb398192 script to install dependencies on debian systems 99c11d77d8 Added build script to build all code in one go, modified update-repository to alleviate detached head issue in submodules 9c60afa1b9 The script now checkouts the correct branch 087fd79719 Changed bootstrap to a logically correct and sensible name, modified it to checkout moogli correctly fb851a959c Merge branch 'master' of https://github.com/BhallaLab/moose 8aeca9e419 Added new moogli, renamed old moogli d4863ac89f Added port file [skip ci] a7e79c660b Script to build mac bundle using cmake [skip ci] 341fab303c Added more instruction on how to build and install. 0da8d8057f Added information about packages. cee4e0e3ca Update README.md 1dc477d088 merging submodules f9e96888f4 Integrating changes from submodules. 77d497a7cf Merged changes, fixed the build, updated readme. 479227a0ed Updated submodules. fbb7586c32 Merged submodules. 08c86ac89d Updating submodules. 3f84a9dd2d Updated submodule. 5e052a24bc Merge branch 'master' of github.com:BhallaLab/moose 1ea6378c8f Merge branch 'master' of github.com:BhallaLab/moose c49218ca64 Replaced tab with spaces, travis file now validates a1091478f3 Corrected travis file format, removed the comment. be72340aca libsbml5.9.0 is support not libsbml-5.11.4 2f0111b3ab Fixed travis. Doxygen and python-sphinx are in. ff5f217796 readme with WITH_DOC option explained. f60abf55d9 Updated submodules. 33e9ce9e84 Script which runs all demo and snippets in non-blocking mode. 4411e091d2 Updated readme file with details about subprojects and location of packages. 7a13e693bb Updated readme. 0e1147ccad Using pip to uninstall the moose-python. Also using cmake -P to install generated target rather than running make install. 1cf48e5b86 The uninstall happens successfully. Need to test if make install aslo runs make again. df41948ac7 make install also runs the target build. This should be fixed. 33418bfff9 Still does not uninstall. 2bb84736e1 removed temp file. 76f7565504 Added simple makefile to automate the process of installing, uninstalling the submodules. Testing needs to be done. 5a2e1536ed make install instead of cmake install in cmake file now. ac2b19f1fb Merge branch 'master' of https://github.com/BhallaLab/moose 9be7ccd41a uninstsall does not work yet. 684f518368 make uninstall still not workinng. f7fc67dcf4 Updated readme file with installtion details. ca1055fd43 A bootstrap script to pull the submodules and init them properly. 90d47d854c Fixed a typo in travis file. cbb80549b3 Fix the typo in travis. ed95e30718 The install prefix in travis is changed to alocal path. f2d679ac4a ctest --output-on-failure 1779f61868 integrating new checkin. a6f10072a6 This installs and build fine. 846f27c2e7 moosegui script. 876dc6be94 No point in making local package. Use launchpad and osc for that. 20fbde5e9a Added debian folder for launchpad. 26e6bbe5f7 Tiny changes. Paths of installation. f706a4a636 Added moosegui scipt. 9d5c34eff3 moose-gui is installed to <prefix>/share/moose/gui folder. eccc5bb228 Added travis for meta repo. 8a4afb1fb6 Added readme file. 92919e0761 Added submodules. git-subtree-dir: moose-core git-subtree-split: 2c3fe7516a3a462c6e408a0e8b3b8f0254c5e903 --- CONTRIBUTING.md | 5 +++++ 1 file changed, 5 insertions(+) create mode 100644 CONTRIBUTING.md diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md new file mode 100644 index 00000000..f9abad87 --- /dev/null +++ b/CONTRIBUTING.md @@ -0,0 +1,5 @@ +To contribute, fork this repo and submit your changes via a pull-request. +Before sending pull-request, check the following: + +- [ ] Software builds locally +- [ ] `ctest --output-on-failure` passes all tests. -- GitLab