From 7e26595ac9bfe9fad42da1c298223ac7702b6bd9 Mon Sep 17 00:00:00 2001 From: Rui Ribeiro <rui.ribeiro@icloud.com> Date: Wed, 9 Mar 2022 18:31:43 +0100 Subject: [PATCH] pre-release --- SI/Gi_parameters.csv | 2 - SI/Gq_parameters.csv | 2 - SI/Gs_parameters.csv | 2 - src/lib/pathways/Gq_parameters.csv | 70 +++++++++++++++--------------- src/lib/pathways/Gq_reactions.csv | 2 +- 5 files changed, 36 insertions(+), 42 deletions(-) diff --git a/SI/Gi_parameters.csv b/SI/Gi_parameters.csv index c0602dd..f97704e 100644 --- a/SI/Gi_parameters.csv +++ b/SI/Gi_parameters.csv @@ -1,6 +1,4 @@ Parameter,Value,Unit -time_in,0,s -time_out,0,s L_init,0.01,uM R_init,2,uM Gi_init,3,uM diff --git a/SI/Gq_parameters.csv b/SI/Gq_parameters.csv index 8f1b5a1..4646208 100644 --- a/SI/Gq_parameters.csv +++ b/SI/Gq_parameters.csv @@ -1,6 +1,4 @@ Parameter,Value,Unit -time_in,0,s -time_out,0,s Gq_a_GDP_init:0.0027739,uM Gq_a_GDP_init:6.4172E-4,uM Gq_bg_init:0.0037173,uM diff --git a/SI/Gs_parameters.csv b/SI/Gs_parameters.csv index 9606930..bb07723 100644 --- a/SI/Gs_parameters.csv +++ b/SI/Gs_parameters.csv @@ -1,6 +1,4 @@ Parameter,Value,Unit -time_in,0,s -time_out,0,s L_init,0.01,uM R_init,2,uM Golf_init,2,uM diff --git a/src/lib/pathways/Gq_parameters.csv b/src/lib/pathways/Gq_parameters.csv index 8f1b5a1..2d499bd 100644 --- a/src/lib/pathways/Gq_parameters.csv +++ b/src/lib/pathways/Gq_parameters.csv @@ -1,40 +1,40 @@ Parameter,Value,Unit time_in,0,s time_out,0,s -Gq_a_GDP_init:0.0027739,uM -Gq_a_GDP_init:6.4172E-4,uM -Gq_bg_init:0.0037173,uM -RGS4_init:0.019994,uM -RGS4_Gq_a_GTP_init:6.4168E-6,uM -Ca_init:0.1,uM -PLCb_init:0.090022,uM -PLCb_Gq_a_GTP_init:1.4492E-4,uM -PLCb_Ca_init:0.0093825,uM -PLCb_Ca_Gq_a_GTP_init:1.5038E-4,uM -PIP2_init:2.6578,uM -IP3_init:0.21952,uM -DAG_init:0.055555,uM -R_Gq_trimer_init:0,uM -R_L_Gq_trimer_init:0,uM -Gq_trimer_init:0.61869,uM -RL_kon:1.00,uM-1*s-1 -RL_koff:0.0046,s-1 -Gqa_Gqbg_kon:6.0,uM-1*s-1 -Gqa_Gqbg_koff:0.0001,s-1 -RL_Gq_decay:0.04,s-1 -RGS4_Gq_a_GTP_kon:20.83,uM-1*s-1 -RGS4_Gq_a_GTP_koff:33.32,s-1 -RGS4_Gq_a_GTP_decay:8.33,s-1 -Gq_a_GTP_decay:0.01,s-1 -Gq_a_GTP_PLCb_kon:2.52,uM-1*s-1 -Gq_a_GTP_PLCb_off:1.00,s-1 -Gq_a_GTP_PLCb_Ca_kon:30.0,uM-1*s-1 -Gq_a_GTP_PLCb_Ca_koff:1.00,s-1 -Gq_a_GTP_PLCb_Ca_decay:0.013,s-1 -PLCb_Ca_kon:3.00,uM-1*s-1 -PLCb_Ca_koff:1.00,s-1 -PLCb_Ca_Gq_a_GTP_kon:25.2,uM-1*s-1 -PLCb_Ca_Gq_a_GTP_koff:1.00,s-1 -DAG_decay:0.15,s-1 +Gq_a_GDP_init,0.0027739,uM +Gq_a_GDP_init,6.4172E-4,uM +Gq_bg_init,0.0037173,uM +RGS4_init,0.019994,uM +RGS4_Gq_a_GTP_init,6.4168E-6,uM +Ca_init,0.1,uM +PLCb_init,0.090022,uM +PLCb_Gq_a_GTP_init,1.4492E-4,uM +PLCb_Ca_init,0.0093825,uM +PLCb_Ca_Gq_a_GTP_init,1.5038E-4,uM +PIP2_init,2.6578,uM +IP3_init,0.21952,uM +DAG_init,0.055555,uM +R_Gq_trimer_init,0,uM +R_L_Gq_trimer_init,0,uM +Gq_trimer_init,0.61869,uM +RL_kon,1.00,uM-1*s-1 +RL_koff,0.0046,s-1 +Gqa_Gqbg_kon,6.0,uM-1*s-1 +Gqa_Gqbg_koff,0.0001,s-1 +RL_Gq_decay,0.04,s-1 +RGS4_Gq_a_GTP_kon,20.83,uM-1*s-1 +RGS4_Gq_a_GTP_koff,33.32,s-1 +RGS4_Gq_a_GTP_decay,8.33,s-1 +Gq_a_GTP_decay,0.01,s-1 +Gq_a_GTP_PLCb_kon,2.52,uM-1*s-1 +Gq_a_GTP_PLCb_off,1.00,s-1 +Gq_a_GTP_PLCb_Ca_kon,30.0,uM-1*s-1 +Gq_a_GTP_PLCb_Ca_koff,1.00,s-1 +Gq_a_GTP_PLCb_Ca_decay,0.013,s-1 +PLCb_Ca_kon,3.00,uM-1*s-1 +PLCb_Ca_koff,1.00,s-1 +PLCb_Ca_Gq_a_GTP_kon,25.2,uM-1*s-1 +PLCb_Ca_Gq_a_GTP_koff,1.00,s-1 +DAG_decay,0.15,s-1 diff --git a/src/lib/pathways/Gq_reactions.csv b/src/lib/pathways/Gq_reactions.csv index 0f6d4a7..7fc3877 100644 --- a/src/lib/pathways/Gq_reactions.csv +++ b/src/lib/pathways/Gq_reactions.csv @@ -1,2 +1,2 @@ -Reaction number,Reaction,Forward parameters names,Reverse parameter names,Forward default (1/(nM*s)),Reverse default (1/s) +Reaction number,Reaction,Forward parameters names,Reverse parameter names,Forward default (1/(uM*s)),Reverse default (1/s) -- GitLab