diff --git a/SI/Gi_parameters.csv b/SI/Gi_parameters.csv index c0602dd098255f6c097b82fb32fed62836cda660..f97704e9d0ed56496b436d98f27f2dddd9f8c519 100644 --- a/SI/Gi_parameters.csv +++ b/SI/Gi_parameters.csv @@ -1,6 +1,4 @@ Parameter,Value,Unit -time_in,0,s -time_out,0,s L_init,0.01,uM R_init,2,uM Gi_init,3,uM diff --git a/SI/Gq_parameters.csv b/SI/Gq_parameters.csv index 8f1b5a12cbc7018b497df4b95123a44e2fb35e4f..46462081d9b215324c640f3250965809f3457e00 100644 --- a/SI/Gq_parameters.csv +++ b/SI/Gq_parameters.csv @@ -1,6 +1,4 @@ Parameter,Value,Unit -time_in,0,s -time_out,0,s Gq_a_GDP_init:0.0027739,uM Gq_a_GDP_init:6.4172E-4,uM Gq_bg_init:0.0037173,uM diff --git a/SI/Gs_parameters.csv b/SI/Gs_parameters.csv index 96069301a4956e0ebebab55cfe399c24c9f0b5bc..bb077230f49cbf617ffd6b1db62e3dacd5906fd4 100644 --- a/SI/Gs_parameters.csv +++ b/SI/Gs_parameters.csv @@ -1,6 +1,4 @@ Parameter,Value,Unit -time_in,0,s -time_out,0,s L_init,0.01,uM R_init,2,uM Golf_init,2,uM diff --git a/src/lib/pathways/Gq_parameters.csv b/src/lib/pathways/Gq_parameters.csv index 8f1b5a12cbc7018b497df4b95123a44e2fb35e4f..2d499bd9e67290d0407b4860a414b227c81b522c 100644 --- a/src/lib/pathways/Gq_parameters.csv +++ b/src/lib/pathways/Gq_parameters.csv @@ -1,40 +1,40 @@ Parameter,Value,Unit time_in,0,s time_out,0,s -Gq_a_GDP_init:0.0027739,uM -Gq_a_GDP_init:6.4172E-4,uM -Gq_bg_init:0.0037173,uM -RGS4_init:0.019994,uM -RGS4_Gq_a_GTP_init:6.4168E-6,uM -Ca_init:0.1,uM -PLCb_init:0.090022,uM -PLCb_Gq_a_GTP_init:1.4492E-4,uM -PLCb_Ca_init:0.0093825,uM -PLCb_Ca_Gq_a_GTP_init:1.5038E-4,uM -PIP2_init:2.6578,uM -IP3_init:0.21952,uM -DAG_init:0.055555,uM -R_Gq_trimer_init:0,uM -R_L_Gq_trimer_init:0,uM -Gq_trimer_init:0.61869,uM -RL_kon:1.00,uM-1*s-1 -RL_koff:0.0046,s-1 -Gqa_Gqbg_kon:6.0,uM-1*s-1 -Gqa_Gqbg_koff:0.0001,s-1 -RL_Gq_decay:0.04,s-1 -RGS4_Gq_a_GTP_kon:20.83,uM-1*s-1 -RGS4_Gq_a_GTP_koff:33.32,s-1 -RGS4_Gq_a_GTP_decay:8.33,s-1 -Gq_a_GTP_decay:0.01,s-1 -Gq_a_GTP_PLCb_kon:2.52,uM-1*s-1 -Gq_a_GTP_PLCb_off:1.00,s-1 -Gq_a_GTP_PLCb_Ca_kon:30.0,uM-1*s-1 -Gq_a_GTP_PLCb_Ca_koff:1.00,s-1 -Gq_a_GTP_PLCb_Ca_decay:0.013,s-1 -PLCb_Ca_kon:3.00,uM-1*s-1 -PLCb_Ca_koff:1.00,s-1 -PLCb_Ca_Gq_a_GTP_kon:25.2,uM-1*s-1 -PLCb_Ca_Gq_a_GTP_koff:1.00,s-1 -DAG_decay:0.15,s-1 +Gq_a_GDP_init,0.0027739,uM +Gq_a_GDP_init,6.4172E-4,uM +Gq_bg_init,0.0037173,uM +RGS4_init,0.019994,uM +RGS4_Gq_a_GTP_init,6.4168E-6,uM +Ca_init,0.1,uM +PLCb_init,0.090022,uM +PLCb_Gq_a_GTP_init,1.4492E-4,uM +PLCb_Ca_init,0.0093825,uM +PLCb_Ca_Gq_a_GTP_init,1.5038E-4,uM +PIP2_init,2.6578,uM +IP3_init,0.21952,uM +DAG_init,0.055555,uM +R_Gq_trimer_init,0,uM +R_L_Gq_trimer_init,0,uM +Gq_trimer_init,0.61869,uM +RL_kon,1.00,uM-1*s-1 +RL_koff,0.0046,s-1 +Gqa_Gqbg_kon,6.0,uM-1*s-1 +Gqa_Gqbg_koff,0.0001,s-1 +RL_Gq_decay,0.04,s-1 +RGS4_Gq_a_GTP_kon,20.83,uM-1*s-1 +RGS4_Gq_a_GTP_koff,33.32,s-1 +RGS4_Gq_a_GTP_decay,8.33,s-1 +Gq_a_GTP_decay,0.01,s-1 +Gq_a_GTP_PLCb_kon,2.52,uM-1*s-1 +Gq_a_GTP_PLCb_off,1.00,s-1 +Gq_a_GTP_PLCb_Ca_kon,30.0,uM-1*s-1 +Gq_a_GTP_PLCb_Ca_koff,1.00,s-1 +Gq_a_GTP_PLCb_Ca_decay,0.013,s-1 +PLCb_Ca_kon,3.00,uM-1*s-1 +PLCb_Ca_koff,1.00,s-1 +PLCb_Ca_Gq_a_GTP_kon,25.2,uM-1*s-1 +PLCb_Ca_Gq_a_GTP_koff,1.00,s-1 +DAG_decay,0.15,s-1 diff --git a/src/lib/pathways/Gq_reactions.csv b/src/lib/pathways/Gq_reactions.csv index 0f6d4a7e79fd62d2e2cfb2141918864d00ab922c..7fc3877a4a2dd702cd66d6d3864b0f946221b1bc 100644 --- a/src/lib/pathways/Gq_reactions.csv +++ b/src/lib/pathways/Gq_reactions.csv @@ -1,2 +1,2 @@ -Reaction number,Reaction,Forward parameters names,Reverse parameter names,Forward default (1/(nM*s)),Reverse default (1/s) +Reaction number,Reaction,Forward parameters names,Reverse parameter names,Forward default (1/(uM*s)),Reverse default (1/s)