diff --git a/src/lib/pathways/Gs.py b/src/lib/pathways/Gs.py index b6e3d56cb898af4c4844ee03d3bef665bc97a741..2f23250ff0b91b4b49e159488c66a07526f46f0f 100644 --- a/src/lib/pathways/Gs.py +++ b/src/lib/pathways/Gs.py @@ -92,9 +92,7 @@ def network(LR=None, kinetics=True, **kwargs): 'PKA_activation_reverse': 0.01 } parameters={**defaultKwargs, **kwargs} - - - + #Start a model Model() diff --git a/src/lib/ssbtoolkit.py b/src/lib/ssbtoolkit.py index a2d12f05ed221ed84a0eff0c1687ca6359a50388..4f2ba5a72a2e1fecc510e4d38b5dd5dc3c4702c6 100644 --- a/src/lib/ssbtoolkit.py +++ b/src/lib/ssbtoolkit.py @@ -22,33 +22,20 @@ __email__ = "rui.ribeiro@univr.it" from re import sub import sys import os -#import csv -#import time -#import json -#import subprocess import importlib import urllib.request as urllib from glob import glob -#from xml.dom import minidom -#from urllib.request import urlopen - -#Paralleling -#import multiprocessing as mp #Scientific Libraries -import math +#import math import numpy as np import pandas as pd -import qgrid from pandas.core import construction -#from pysb.core import ConstantExpressionError -#from scipy.optimize.zeros import CONVERGED -#from scipy.spatial import distance from scipy.optimize import curve_fit, minimize +from sklearn.preprocessing import minmax_scale #Plotting Libraries import plotly.graph_objs as go -#import plotly.io as pio import pylab as pl from matplotlib import * @@ -57,7 +44,8 @@ from pysb import * from pysb.macros import * from pysb.simulator import ScipyOdeSimulator - +#Layout libraries +import qgrid #directories (problem with sphinx) abs_path=(os.path.join(os.path.split(os.getcwd())[0], 'src/lib')) @@ -71,9 +59,8 @@ except: import warnings -warnings.simplefilter(action='ignore', category=FutureWarning) +warnings.simplefilter(action='ignore') -from sklearn.preprocessing import minmax_scale