diff --git a/base/Dockerfile b/base/Dockerfile index c0c71814420300fd5ce9d594e97b5fd6c67e8668..f3f11e8c4d0e514e954dda644d85a14972b19718 100644 --- a/base/Dockerfile +++ b/base/Dockerfile @@ -27,12 +27,14 @@ RUN apt-get update --yes && \ cython \ gcc \ gettext \ + libgl1-mesa-dev \ llvm \ lsof \ mpich \ r-base \ swig \ - vim && \ + vim \ + xvfb && \ apt-get clean && rm -rf /var/lib/apt/lists/* # jupyter install in /opt/app-root/ for legacy reasons (previously based on centos base image) @@ -60,7 +62,8 @@ RUN jupyter labextension disable ipcluster \ RUN jupyter labextension install --no-build \ clb-jupyter-ext-query-params-dev@3.2.0 \ clb-lab-extension@0.9.2 \ - ipycanvas@0.12.0 + ipycanvas@0.12.0 \ + @jupyterlab/server-proxy # ipycanvas@0.12.0: Python part installed via spack (py-ipycanvas@0.12.0) RUN jupyter lab build diff --git a/base/requirements.txt b/base/requirements.txt index 59f75d92402ebe2eaa8db7d9aff808def0c7b8c3..5171fe153ee43cf5b1addf8e03cfd1ed75c2d261 100644 --- a/base/requirements.txt +++ b/base/requirements.txt @@ -1,22 +1,27 @@ -bokeh==2.4.2 +bokeh==3.1.1 ipympl==0.8.5 -ipywidgets==7.6.5 -jupyterlab-widgets==1.0.2 +ipywidgets==8.0.7 +jupyterlab-widgets==1.1.0 jupyterlab-topbar==0.6.1 jupyterlab-system-monitor==0.8.0 jupyterlab-git==0.34.1 +jupyter-bokeh==3.0.7 +jupyter-server-proxy==4.1.2 nbdime==3.1.1 nbgitpuller==1.0.2 nbresuse==0.4.0 nglview==3.0.3 pyOpenSSL==22.0.0 # TODO: Issue with 22.1 https://github.com/pyca/pyopenssl/issues/1154 +pyvista>=0.42.0 requests-oauthlib==1.3.0 rise==5.7.1 +trame_jupyter_extension<2 tvb-ext-bucket==1.0.0 -tvb-ext-unicore==1.2.0 -tvb-widgets==1.5.0 +tvb-ext-unicore==2.0.0 +tvb-widgets==1.6.0 tvb-ext-xircuits==1.1.0 vincent==0.4.4 +vtk widgetsnbextension==3.5.2 xlrd==2.0.1 git+https://github.com/HumanBrainProject/clb-nb-utils.git