From da7d5f9160cf0413d395da56ca9c4cb8cdf65818 Mon Sep 17 00:00:00 2001
From: liadomide <lia_domide@yahoo.com>
Date: Fri, 21 Feb 2025 13:36:15 +0200
Subject: [PATCH 1/3] tvb-library version 2.9.2
---
packages/py-tvb-library/package.py | 5 ++---
spack.yaml | 2 +-
2 files changed, 3 insertions(+), 4 deletions(-)
diff --git a/packages/py-tvb-library/package.py b/packages/py-tvb-library/package.py
index 5506bc36..cba366b8 100644
--- a/packages/py-tvb-library/package.py
+++ b/packages/py-tvb-library/package.py
@@ -14,10 +14,11 @@ class PyTvbLibrary(PythonPackage):
"""
homepage = "https://www.thevirtualbrain.org/"
- pypi = 'tvb-library/tvb_library-2.9.1.tar.gz'
+ pypi = 'tvb-library/tvb_library-2.9.2.tar.gz'
maintainers = ['ldomide', 'paulapopa', 'teodoramisan']
+ version('2.9.2', 'be3562b28464e51d09e9378d71996fc11522121124c5438dd3e9cdd71060d09e')
version('2.9.1', 'a251f602bffe768e6184ffc14d3d6ad9f03be879a78062a7397c30a5f8878b41')
version('2.9', '0a65fa3d803ef8da3d69a0f27a13e40b79876ee6d5b627c34d0c9fc5c12697e6')
version('2.8.2', '4222dadbecce53b29e2141801b1ca8eb99c4595ace6c7d0469f7e0a41d3f384a')
@@ -62,8 +63,6 @@ class PyTvbLibrary(PythonPackage):
depends_on('py-pytest-benchmark', type='test')
depends_on('py-pytest-xdist', type='test')
- skip_modules = ['tvb.tests.library.simulator.rateml_test', "tvb/tests/library/simulator/rateml_test"]
-
@run_after('install')
@on_package_attributes(run_tests=True)
def install_test(self):
diff --git a/spack.yaml b/spack.yaml
index 5f8217b5..79fd41e2 100644
--- a/spack.yaml
+++ b/spack.yaml
@@ -49,7 +49,7 @@ spack:
- py-spynnaker@7.3.0
- py-tvb-framework@2.9
- py-tvb-contrib@2.9.1
- - py-tvb-library@2.9.1
+ - py-tvb-library@2.9.2
- py-tvb-multiscale@2.1.0.ebrains
- py-tvb-widgets@2.1.0
- py-tvb-ext-bucket
--
GitLab
From 4ca8bc205a073a771eb83c27e256585f9644b391 Mon Sep 17 00:00:00 2001
From: liadomide <lia_domide@yahoo.com>
Date: Fri, 21 Feb 2025 13:54:56 +0200
Subject: [PATCH 2/3] we changed from setup.py into pyproject.toml
---
packages/py-tvb-library/package.py | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/packages/py-tvb-library/package.py b/packages/py-tvb-library/package.py
index cba366b8..db075a86 100644
--- a/packages/py-tvb-library/package.py
+++ b/packages/py-tvb-library/package.py
@@ -36,8 +36,8 @@ class PyTvbLibrary(PythonPackage):
# python_requires
depends_on('python@3.8:', type=('build', 'run'))
- # setup_requires
- depends_on('py-setuptools', type='build')
+ # build_requires
+ depends_on('py-hatchling', type='build')
# install_requires
depends_on('py-autopep8', type=('build', 'run'))
--
GitLab
From f58037496df4599de648ee682778f50426461d4f Mon Sep 17 00:00:00 2001
From: Eleni Mathioulaki <emathioulaki@athenarc.gr>
Date: Fri, 21 Feb 2025 15:18:06 +0100
Subject: [PATCH 3/3] add scipy dependency version range
---
packages/py-tvb-library/package.py | 1 +
1 file changed, 1 insertion(+)
diff --git a/packages/py-tvb-library/package.py b/packages/py-tvb-library/package.py
index db075a86..c624a102 100644
--- a/packages/py-tvb-library/package.py
+++ b/packages/py-tvb-library/package.py
@@ -54,6 +54,7 @@ class PyTvbLibrary(PythonPackage):
depends_on('py-numba', type=('build', 'run'))
depends_on('py-numexpr', type=('build', 'run'))
depends_on('py-scipy', type=('build', 'run'))
+ depends_on('py-scipy@:1.13', type=('build', 'run'), when='@:2.9.1')
depends_on('py-six', type=('build', 'run'))
depends_on('py-tvb-data', type=('run', 'test'))
depends_on('py-tvb-gdist', type=('run', 'test'))
--
GitLab