From dca6ad39d71687255b39dbbe500dd2c251434cb6 Mon Sep 17 00:00:00 2001
From: Shailesh Appukuttan <appukuttan.shailesh@gmail.com>
Date: Wed, 23 Feb 2022 14:11:58 +0100
Subject: [PATCH 1/3] ADD recipes for SciUnit, Cerebrus, Quantities-SciDash
---
packages/py-cerebrus/package.py | 20 ++++++++++++++
packages/py-quantities-scidash/package.py | 19 +++++++++++++
packages/py-sciunit/package.py | 33 +++++++++++++++++++++++
spack.yaml | 4 +++
4 files changed, 76 insertions(+)
create mode 100644 packages/py-cerebrus/package.py
create mode 100644 packages/py-quantities-scidash/package.py
create mode 100644 packages/py-sciunit/package.py
diff --git a/packages/py-cerebrus/package.py b/packages/py-cerebrus/package.py
new file mode 100644
index 00000000..a274ddea
--- /dev/null
+++ b/packages/py-cerebrus/package.py
@@ -0,0 +1,20 @@
+# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+
+class PyCerebrus(PythonPackage):
+ """Lightweight, extensible schema and data validation tool for Python dictionaries
+ """
+
+ homepage = "http://docs.python-cerberus.org/"
+ pypi = "Cerberus/Cerberus-1.3.4.tar.gz"
+ git = "https://github.com/pyeve/cerberus.git"
+
+ version('1.3.4', sha256='d1b21b3954b2498d9a79edf16b3170a3ac1021df88d197dc2ce5928ba519237c')
+
+ depends_on('python@3.6.9:')
+ depends_on('py-setuptools', type=('build', 'run'))
\ No newline at end of file
diff --git a/packages/py-quantities-scidash/package.py b/packages/py-quantities-scidash/package.py
new file mode 100644
index 00000000..b92484b7
--- /dev/null
+++ b/packages/py-quantities-scidash/package.py
@@ -0,0 +1,19 @@
+# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+
+class PyQuantitiesScidash(PythonPackage):
+ """Support for physical quantities with units, based on numpy
+ """
+
+ homepage = "http://python-quantities.readthedocs.io/"
+ pypi = "quantities-scidash/quantities-scidash-0.12.4.3.tar.gz"
+ git = "https://github.com/python-quantities/python-quantities.git"
+
+ version('0.12.4.3', sha256='c281383b989ae19bfe1526c09e452c82880b633a735f9494d8bb469412a33ea2')
+
+ depends_on('python@3.6.9:')
\ No newline at end of file
diff --git a/packages/py-sciunit/package.py b/packages/py-sciunit/package.py
new file mode 100644
index 00000000..dfb89881
--- /dev/null
+++ b/packages/py-sciunit/package.py
@@ -0,0 +1,33 @@
+# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+
+class PySciUnit(PythonPackage):
+ """A test-driven framework for formally validating scientific models against data
+ """
+
+ homepage = "http://sciunit.scidash.org/"
+ pypi = "sciunit/sciunit-0.2.5.1.tar.gz"
+ git = "https://github.com/scidash/sciunit.git"
+
+ version('0.2.5.1', sha256='6148704f92a29c9d6de65ca9455b03ebe1f05101dae5e706aee2186e5a09fab3')
+
+ depends_on('python@3.6.9:')
+ depends_on('py-beautifulsoup4', type=('build', 'run'))
+ depends_on('py-cerebrus@1.3.4', type=('build', 'run'))
+ depends_on('py-deepdiff', type=('build', 'run'))
+ depends_on('py-gitpython', type=('build', 'run'))
+ depends_on('py-importlib-metadata', type=('build', 'run'))
+ depends_on('py-ipykernel', type=('build', 'run'))
+ depends_on('py-ipython', type=('build', 'run'))
+ depends_on('py-jsonpickle', type=('build', 'run'))
+ depends_on('py-lxml', type=('build', 'run'))
+ depends_on('py-matplotlib', type=('build', 'run'))
+ depends_on('py-nbconvert', type=('build', 'run'))
+ depends_on('py-nbformat', type=('build', 'run'))
+ depends_on('py-pandas@0.18:', type=('build', 'run'))
+ depends_on('quantities-scidash@0.12.4.3:', type=('build', 'run'))
\ No newline at end of file
diff --git a/spack.yaml b/spack.yaml
index 0d262fa1..ba78a315 100644
--- a/spack.yaml
+++ b/spack.yaml
@@ -19,6 +19,7 @@ spack:
- py-pandas %gcc@10.3.0
- py-seaborn %gcc@10.3.0
- py-matplotlib %gcc@10.3.0
+ - py-cerebrus %gcc@10.3.0
# EBRAINS simulators
- nest@3.0 +python +gsl +mpi %gcc@10.3.0
- arbor +mpi ^python@3:3.9 %gcc@10.3.0
@@ -37,4 +38,7 @@ spack:
- funniest1022 %gcc@10.3.0
# NRP
- py-torch~mkldnn~cuda~cudnn~onnx_ml~rocm~tensorpipe~mpi~distributed ^protobuf@:3.17.999 %gcc@10.3.0
+ # Other tools and services
+ - py-sciunit@0.2.5.1 %gcc@10.3.0
+ - py-quantities-scidash@0.12.4.3 %gcc@10.3.0
concretization: together
--
GitLab
From ef9cb396c9a6e8ddfa9f151420b7354a5ab0176f Mon Sep 17 00:00:00 2001
From: Shailesh Appukuttan <appukuttan.shailesh@gmail.com>
Date: Thu, 24 Feb 2022 10:06:22 +0100
Subject: [PATCH 2/3] small fix
---
packages/py-sciunit/package.py | 29 +++++++++++++++--------------
1 file changed, 15 insertions(+), 14 deletions(-)
diff --git a/packages/py-sciunit/package.py b/packages/py-sciunit/package.py
index dfb89881..8095d70b 100644
--- a/packages/py-sciunit/package.py
+++ b/packages/py-sciunit/package.py
@@ -15,19 +15,20 @@ class PySciUnit(PythonPackage):
git = "https://github.com/scidash/sciunit.git"
version('0.2.5.1', sha256='6148704f92a29c9d6de65ca9455b03ebe1f05101dae5e706aee2186e5a09fab3')
+ version('0.2.6', sha256='21a38576be179431debffbb25fd72994836e0cad9de653559fcc9c2e124daa44')
depends_on('python@3.6.9:')
- depends_on('py-beautifulsoup4', type=('build', 'run'))
- depends_on('py-cerebrus@1.3.4', type=('build', 'run'))
- depends_on('py-deepdiff', type=('build', 'run'))
- depends_on('py-gitpython', type=('build', 'run'))
- depends_on('py-importlib-metadata', type=('build', 'run'))
- depends_on('py-ipykernel', type=('build', 'run'))
- depends_on('py-ipython', type=('build', 'run'))
- depends_on('py-jsonpickle', type=('build', 'run'))
- depends_on('py-lxml', type=('build', 'run'))
- depends_on('py-matplotlib', type=('build', 'run'))
- depends_on('py-nbconvert', type=('build', 'run'))
- depends_on('py-nbformat', type=('build', 'run'))
- depends_on('py-pandas@0.18:', type=('build', 'run'))
- depends_on('quantities-scidash@0.12.4.3:', type=('build', 'run'))
\ No newline at end of file
+ depends_on('py-beautifulsoup4', type=('build', 'run'))
+ depends_on('py-cerebrus@1.3.4', type=('build', 'run'))
+ depends_on('py-deepdiff', type=('build', 'run'))
+ depends_on('py-gitpython', type=('build', 'run'))
+ depends_on('py-importlib-metadata', type=('build', 'run'))
+ depends_on('py-ipykernel', type=('build', 'run'))
+ depends_on('py-ipython', type=('build', 'run'))
+ depends_on('py-jsonpickle', type=('build', 'run'))
+ depends_on('py-lxml', type=('build', 'run'))
+ depends_on('py-matplotlib', type=('build', 'run'))
+ depends_on('py-nbconvert', type=('build', 'run'))
+ depends_on('py-nbformat', type=('build', 'run'))
+ depends_on('py-pandas@0.18:', type=('build', 'run'))
+ depends_on('py-quantities-scidash@0.12.4.3:', type=('build', 'run'))
\ No newline at end of file
--
GitLab
From a0a5dda0c9401929ffd8879dd6fbe28616a79f91 Mon Sep 17 00:00:00 2001
From: Shailesh Appukuttan <appukuttan.shailesh@gmail.com>
Date: Thu, 24 Feb 2022 10:08:42 +0100
Subject: [PATCH 3/3] remove latest sciunit version
---
packages/py-sciunit/package.py | 1 -
1 file changed, 1 deletion(-)
diff --git a/packages/py-sciunit/package.py b/packages/py-sciunit/package.py
index 8095d70b..56d12d97 100644
--- a/packages/py-sciunit/package.py
+++ b/packages/py-sciunit/package.py
@@ -15,7 +15,6 @@ class PySciUnit(PythonPackage):
git = "https://github.com/scidash/sciunit.git"
version('0.2.5.1', sha256='6148704f92a29c9d6de65ca9455b03ebe1f05101dae5e706aee2186e5a09fab3')
- version('0.2.6', sha256='21a38576be179431debffbb25fd72994836e0cad9de653559fcc9c2e124daa44')
depends_on('python@3.6.9:')
depends_on('py-beautifulsoup4', type=('build', 'run'))
--
GitLab