From edb2032ca064ac50ee6aa9710cab5a389d2f1a4c Mon Sep 17 00:00:00 2001
From: Athanasios Karmas <karmas@athenarc.gr>
Date: Fri, 19 Nov 2021 15:45:09 +0000
Subject: [PATCH] added path in PYTHONPATH to allow importing modules installed
at runtime via pip
---
create_JupyterLab_kernel.sh | 3 +++
spack.yaml | 2 +-
2 files changed, 4 insertions(+), 1 deletion(-)
diff --git a/create_JupyterLab_kernel.sh b/create_JupyterLab_kernel.sh
index a4c21118..f819f00c 100644
--- a/create_JupyterLab_kernel.sh
+++ b/create_JupyterLab_kernel.sh
@@ -21,6 +21,9 @@ spack repo add /srv/$INSTALLATION_ROOT/ebrains-spack-builds
module use /srv/$INSTALLATION_ROOT/spack/share/spack/modules/linux-centos7-broadwell/
source /srv/$INSTALLATION_ROOT/spack/var/spack/environments/$SPACKIFIED_ENV/loads
+# add also user's .local python3.8 packages to allow package installation at runtime
+# by the user using pip
+export PYTHONPATH=$PYTHONPATH:/opt/app-root/src/.local/lib/python3.8/site-packages
# capture the env after spack activation
cd /opt/app-root/src
diff --git a/spack.yaml b/spack.yaml
index d8c472e4..aefab57a 100644
--- a/spack.yaml
+++ b/spack.yaml
@@ -15,7 +15,7 @@ spack:
- py-seaborn %gcc@10.3.0
- py-matplotlib %gcc@10.3.0
# EBRAINS simulators
- - nest@3.1 +python +gsl +mpi %gcc@10.3.0
+ - nest@3.0 +python +gsl +mpi %gcc@10.3.0
- arbor +mpi ^python@3:3.9 %gcc@10.3.0
- neuron +mpi %gcc@10.3.0
- py-pynn@0.9.6 %gcc@10.3.0
--
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