diff --git a/site-config/jurecadc/compilers.yaml b/site-config/jurecadc/compilers.yaml index 7b45d5dd9cc6beee7b758938d9f7cb5c17f61c8a..0b1c1c30e164ec4510027cacd47706254b3f585d 100644 --- a/site-config/jurecadc/compilers.yaml +++ b/site-config/jurecadc/compilers.yaml @@ -1,16 +1,16 @@ compilers: - compiler: - spec: gcc@11.3.0 + spec: gcc@12.3.0 paths: - cc: /p/software/jurecadc/stages/2023/software/GCCcore/11.3.0/bin/gcc - cxx: /p/software/jurecadc/stages/2023/software/GCCcore/11.3.0/bin/g++ - f77: /p/software/jurecadc/stages/2023/software/GCCcore/11.3.0/bin/gfortran - fc: /p/software/jurecadc/stages/2023/software/GCCcore/11.3.0/bin/gfortran + cc: /p/software/jurecadc/stages/2024/software/GCCcore/12.3.0/bin/gcc + cxx: /p/software/jurecadc/stages/2024/software/GCCcore/12.3.0/bin/g++ + f77: /p/software/jurecadc/stages/2024/software/GCCcore/12.3.0/bin/gfortran + fc: /p/software/jurecadc/stages/2024/software/GCCcore/12.3.0/bin/gfortran flags: {} operating_system: rocky8 target: x86_64 modules: - - StdEnv/2023 + - StdEnv/2024 environment: {} extra_rpaths: [] - compiler: diff --git a/site-config/jurecadc/config.yaml b/site-config/jurecadc/config.yaml index 7ead3e86ca90a7a4e721a5ab06c18f2e0e6a1880..a23f4a7216d5a331da8d09dd09606f333eb0d4eb 100644 --- a/site-config/jurecadc/config.yaml +++ b/site-config/jurecadc/config.yaml @@ -1,10 +1,11 @@ config: build_stage: - - /p/usersoftware/swmanage/EBRAINS/$SYSTEMNAME/spack/user-cache/$user/spack-stage - - $tempdir/$user/spack-stage - source_cache: /p/usersoftware/swmanage/EBRAINS/$SYSTEMNAME/spack/source-cache - test_stage: /p/usersoftware/swmanage/EBRAINS/$SYSTEMNAME/spack/user-cache/$user/test - misc_cache: /p/usersoftware/swmanage/EBRAINS/$SYSTEMNAME/spack/user-cache/$user/cache + - /p/usersoftware/ebrains-sw-stack/ebrains-24.04/$SYSTEMNAME/spack/user-cache/$USER/spack-stage + - $tempdir/$USER/spack-stage + #- $SCRATCH_cswmanage/$USER/$SYSTEMNAME/spack-stage + source_cache: /p/usersoftware/ebrains-sw-stack/ebrains-24.04/$SYSTEMNAME/spack/source-cache + test_stage: /p/usersoftware/ebrains-sw-stack/ebrains-24.04/$SYSTEMNAME/spack/user-cache/$USER/test + misc_cache: /p/usersoftware/ebrains-sw-stack/ebrains-24.04/$SYSTEMNAME/spack/user-cache/$USER/cache install_tree: - root: /p/usersoftware/swmanage/EBRAINS/$SYSTEMNAME/install + root: /p/usersoftware/ebrains-sw-stack/ebrains-24.04/$SYSTEMNAME/install db_lock_timeout: 10 diff --git a/site-config/jurecadc/packages.yaml b/site-config/jurecadc/packages.yaml index 58af7370b400906e0bbf3c6839a8586724789348..25412dd71b34e25c6349ac4394aa1f0ddfb2f61a 100644 --- a/site-config/jurecadc/packages.yaml +++ b/site-config/jurecadc/packages.yaml @@ -1,119 +1,94 @@ -# `spack external find` with -# Currently Loaded Modules: -# 1) Stages/2023 (S) 2) GCCcore/.11.3.0 (H) 3) zlib/.1.2.12 (H) 4) binutils/.2.38 (H) 5) StdEnv/2023 6) spack/0.19.2 +# `spack external find` with +# Currently Loaded Modules: +# 1) Stages/2024 (S) 5) StdEnv/2024 9) UCX-settings/RC 13) libxml2/.2.11.4 (H) 17) hwloc/2.9.1 (g) +# 2) GCCcore/.12.3.0 (H) 6) GCC/12.3.0 10) UCX/default (g) 14) OpenSSL/1.1 18) PMIx/4.2.6 +# 3) zlib/.1.2.13 (H) 7) numactl/2.0.16 11) pscom/.5-default (H) 15) libevent/.2.1.12 (H) 19) MPI-settings/UCX +# 4) binutils/.2.40 (H) 8) CUDA/12 (g) 12) XZ/.5.4.2 (H) 16) libpciaccess/.0.17 (H) 20) ParaStationMPI/5.9.2-1 (g) packages: - all: - variants: +cuda cuda_arch=75,80 - llvm: - variants: ~cuda - findutils: - externals: - - spec: findutils@4.6.0 - prefix: /usr - groff: - externals: - - spec: groff@1.22.3 - prefix: /usr - flex: - externals: - - spec: flex@2.6.1+lex - prefix: /usr - diffutils: - externals: - - spec: diffutils@3.6 - prefix: /usr -# TODO git, git-lsf and especially curl have been removed due to system curl not having support for https -# git: -# externals: -# - spec: git@2.31.1~tcltk -# prefix: /usr - m4: - externals: - - spec: m4@1.4.18 - prefix: /usr -# TODO Using system version causes 'missing makeinfo', as the binary is not available -# texinfo: -# externals: -# - spec: texinfo@6.5 -# prefix: /usr subversion: externals: - spec: subversion@1.10.2 prefix: /usr - libtool: - externals: - - spec: libtool@2.4.6 - prefix: /usr + cuda: + buildable: False + externals: + - spec: cuda@12.2.91 + prefix: /p/software/jurecadc/stages/2024/software/CUDA/12/ + modules: + - Stages/2024 + - CUDA/12 + cudnn: + buildable: False + externals: + - spec: cudnn@8.9.5.29-12 + prefix: /p/software/jurecadc/stages/2024/software/cuDNN/8.9.5.29-CUDA-12/ + modules: + - Stages/2024 + - cuDNN/8.9.5.29-CUDA-12 + mpi: + buildable: False + mpich: + buildable: False + externals: + - spec: "mpich@4.1.5%gcc@12.3.0 arch=linux-rocky8-zen2" + prefix: /p/software/jurecadc/stages/2024/software/psmpi/5.9.2-1-GCC-12.3.0-pmi/ + modules: + - Stages/2024 + - GCC/12.3.0 + - ParaStationMPI/5.9.2-1-pmi + + all: + compiler: ["gcc@12.3"] + variants: +mpi +cuda cuda_arch=75 + llvm: + variants: ~cuda binutils: + buildable: False externals: - - spec: binutils@2.38 - prefix: /p/software/jurecadc/stages/2023/software/binutils/2.38-GCCcore-11.3.0 + - spec: binutils@2.40 + prefix: /p/software/jurecadc/stages/2024/software/binutils/2.40-GCCcore-12.3.0 openssl: + buildable: False externals: - spec: openssl@1.1.1k - prefix: /p/software/jurecadc/stages/2023/software/OpenSSL/1.1 - pkgconf: - externals: - - spec: pkgconf@1.4.2 - prefix: /usr - automake: - externals: - - spec: automake@1.16.1 - prefix: /usr - tar: - externals: - - spec: tar@1.30 - prefix: /usr - gmake: - externals: - - spec: gmake@4.2.1 - prefix: /usr - openssh: - externals: - - spec: openssh@8.0p1 - prefix: /usr -# curl: -# externals: -# - spec: curl@7.61.1+gssapi+ldap+nghttp2 -# prefix: /usr -# git-lfs: -# externals: -# - spec: git-lfs@2.13.3 -# prefix: /usr - gawk: - externals: - - spec: gawk@4.2.1 - prefix: /usr - coreutils: - externals: - - spec: coreutils@8.30 - prefix: /usr - bison: - externals: - - spec: bison@3.0.4 - prefix: /usr - autoconf: - externals: - - spec: autoconf@2.69 - prefix: /usr -# packages: -# all: -# compiler: [gcc@11.2.0] -# python: -# buildable: False -# version: [3.9.6] -# externals: -# - spec: "python@3.9.6%gcc@11.2.0 arch=linux-rocky8-zen2" -# prefix: /p/software/jurecadc/stages/2022/software/Python/3.9.6-GCCcore-11.2.0/ -# openssl: -# buildable: False -# version: [1.1.1k] -# externals: -# - spec: openssl@1.1.1k -# prefix: /p/software/jurecadc/stages/2022/software/OpenSSL/1.1/ -# mpi: -# buildable: False -# openmpi: -# externals: -# - spec: "openmpi@4.1.2%gcc@11.2.0 arch=linux-rocky8-zen2" -# prefix: /p/software/jurecadc/stages/2022/software/OpenMPI/4.1.2-GCC-11.2.0/ + prefix: /p/software/jurecadc/stages/2024/software/OpenSSL/1.1 + numactl: + buildable: False + externals: + - spec: numactl@2.0.16 + prefix: /p/software/jurecadc/stages/2024/software/numactl/2.0.16-GCCcore-12.3.0 + ucx: + buildable: False + externals: + - spec: ucx@1.15.0 + prefix: /p/software/jurecadc/stages/2024/software/UCX/default-GCCcore-12.3.0 + xz: + buildable: False + externals: + - spec: xz@5.4.2 + prefix: /p/software/jurecadc/stages/2024/software/XZ/5.4.2-GCCcore-12.3.0 + libxml2: + buildable: False + externals: + - spec: libxml2@2.11.4 + prefix: /p/software/jurecadc/stages/2024/software/libxml2/2.11.4-GCCcore-12.3.0 + libevent: + buildable: False + externals: + - spec: libevent@2.1.12 + prefix: /p/software/jurecadc/stages/2024/software/libevent/2.1.12-GCCcore-12.3.0 + libpciaccess: + buildable: False + externals: + - spec: libpciaccess@0.17 + prefix: /p/software/jurecadc/stages/2024/software/libpciaccess/0.17-GCCcore-12.3.0 + hwloc: + buildable: False + externals: + - spec: hwloc@2.9.1 + prefix: /p/software/jurecadc/stages/2024/software/hwloc/2.9.1-GCCcore-12.3.0 + pmix: + buildable: False + externals: + - spec: pmix@4.2.6 + prefix: /p/software/jurecadc/stages/2024/software/PMIx/4.2.6-GCCcore-12.3.0 diff --git a/site-config/jusuf/compilers.yaml b/site-config/jusuf/compilers.yaml index 6c5558a134ed3967122d8dcba210758ac898b4e7..4d01e39cab0e6431603cbda44f537409629d1959 100644 --- a/site-config/jusuf/compilers.yaml +++ b/site-config/jusuf/compilers.yaml @@ -1,16 +1,16 @@ compilers: - compiler: - spec: gcc@11.3.0 + spec: gcc@12.3.0 paths: - cc: /p/software/jusuf/stages/2023/software/GCCcore/11.3.0/bin/gcc - cxx: /p/software/jusuf/stages/2023/software/GCCcore/11.3.0/bin/g++ - f77: /p/software/jusuf/stages/2023/software/GCCcore/11.3.0/bin/gfortran - fc: /p/software/jusuf/stages/2023/software/GCCcore/11.3.0/bin/gfortran + cc: /p/software/jusuf/stages/2024/software/GCCcore/12.3.0/bin/gcc + cxx: /p/software/jusuf/stages/2024/software/GCCcore/12.3.0/bin/g++ + f77: /p/software/jusuf/stages/2024/software/GCCcore/12.3.0/bin/gfortran + fc: /p/software/jusuf/stages/2024/software/GCCcore/12.3.0/bin/gfortran flags: {} operating_system: rocky8 target: x86_64 modules: - - StdEnv/2023 + - StdEnv/2024 environment: {} extra_rpaths: [] - compiler: diff --git a/site-config/jusuf/config.yaml b/site-config/jusuf/config.yaml index 7ead3e86ca90a7a4e721a5ab06c18f2e0e6a1880..91e49dcd9738cbbdac960589959c0353acdd5d71 100644 --- a/site-config/jusuf/config.yaml +++ b/site-config/jusuf/config.yaml @@ -1,10 +1,11 @@ config: build_stage: - - /p/usersoftware/swmanage/EBRAINS/$SYSTEMNAME/spack/user-cache/$user/spack-stage - - $tempdir/$user/spack-stage - source_cache: /p/usersoftware/swmanage/EBRAINS/$SYSTEMNAME/spack/source-cache - test_stage: /p/usersoftware/swmanage/EBRAINS/$SYSTEMNAME/spack/user-cache/$user/test - misc_cache: /p/usersoftware/swmanage/EBRAINS/$SYSTEMNAME/spack/user-cache/$user/cache + - /p/usersoftware/ebrains-sw-stack/ebrains-24.04/$SYSTEMNAME/spack/user-cache/$USER/spack-stage + #- $SCRATCH_cswmanage/$USER/$SYSTEMNAME/spack-stage + - $tempdir/$USER/spack-stage + source_cache: /p/usersoftware/ebrains-sw-stack/ebrains-24.04/$SYSTEMNAME/spack/source-cache + test_stage: /p/usersoftware/ebrains-sw-stack/ebrains-24.04/$SYSTEMNAME/spack/user-cache/$USER/test + misc_cache: /p/usersoftware/ebrains-sw-stack/ebrains-24.04/$SYSTEMNAME/spack/user-cache/$USER/cache install_tree: - root: /p/usersoftware/swmanage/EBRAINS/$SYSTEMNAME/install + root: /p/usersoftware/ebrains-sw-stack/ebrains-24.04/$SYSTEMNAME/install db_lock_timeout: 10 diff --git a/site-config/jusuf/packages.yaml b/site-config/jusuf/packages.yaml index c7ff63252c20acb1b1e713619e1e7279435818fd..2ba2b11f30a84124ce60950cd6958a5b8503e761 100644 --- a/site-config/jusuf/packages.yaml +++ b/site-config/jusuf/packages.yaml @@ -1,119 +1,94 @@ -# `spack external find` with -# Currently Loaded Modules: -# 1) Stages/2023 (S) 2) GCCcore/.11.3.0 (H) 3) zlib/.1.2.12 (H) 4) binutils/.2.38 (H) 5) StdEnv/2023 6) spack/0.19.2 +# `spack external find` with +# Currently Loaded Modules: +# 1) Stages/2024 (S) 5) StdEnv/2024 9) UCX-settings/RC 13) libxml2/.2.11.4 (H) 17) hwloc/2.9.1 (g) +# 2) GCCcore/.12.3.0 (H) 6) GCC/12.3.0 10) UCX/default (g) 14) OpenSSL/1.1 18) PMIx/4.2.6 +# 3) zlib/.1.2.13 (H) 7) numactl/2.0.16 11) pscom/.5-default (H) 15) libevent/.2.1.12 (H) 19) MPI-settings/UCX +# 4) binutils/.2.40 (H) 8) CUDA/12 (g) 12) XZ/.5.4.2 (H) 16) libpciaccess/.0.17 (H) 20) ParaStationMPI/5.9.2-1 (g) packages: - all: - variants: +cuda cuda_arch=75,80 - llvm: - variants: ~cuda - findutils: - externals: - - spec: findutils@4.6.0 - prefix: /usr - groff: - externals: - - spec: groff@1.22.3 - prefix: /usr - flex: - externals: - - spec: flex@2.6.1+lex - prefix: /usr - diffutils: - externals: - - spec: diffutils@3.6 - prefix: /usr -# TODO git, git-lsf and especially curl have been removed due to system curl not having support for https -# git: -# externals: -# - spec: git@2.31.1~tcltk -# prefix: /usr - m4: - externals: - - spec: m4@1.4.18 - prefix: /usr -# TODO Using system version causes 'missing makeinfo', as the binary is not available -# texinfo: -# externals: -# - spec: texinfo@6.5 -# prefix: /usr subversion: externals: - spec: subversion@1.10.2 prefix: /usr - libtool: - externals: - - spec: libtool@2.4.6 - prefix: /usr + cuda: + buildable: False + externals: + - spec: cuda@12.2.91 + prefix: /p/software/jusuf/stages/2024/software/CUDA/12/ + modules: + - Stages/2024 + - CUDA/12 + cudnn: + buildable: False + externals: + - spec: cudnn@8.9.5.29-12 + prefix: /p/software/jusuf/stages/2024/software/cuDNN/8.9.5.29-CUDA-12/ + modules: + - Stages/2024 + - cuDNN/8.9.5.29-CUDA-12 + mpi: + buildable: False + mpich: + buildable: False + externals: + - spec: "mpich@4.1.5%gcc@12.3.0 arch=linux-rocky8-zen2" + prefix: /p/software/jusuf/stages/2024/software/psmpi/5.9.2-1-GCC-12.3.0-pmi/ + modules: + - Stages/2024 + - GCC/12.3.0 + - ParaStationMPI/5.9.2-1-pmi + + all: + compiler: ["gcc@12.3"] + variants: +mpi +cuda cuda_arch=75 + llvm: + variants: ~cuda binutils: + buildable: False externals: - - spec: binutils@2.38 - prefix: /p/software/jusuf/stages/2023/software/binutils/2.38-GCCcore-11.3.0 + - spec: binutils@2.40 + prefix: /p/software/jusuf/stages/2024/software/binutils/2.40-GCCcore-12.3.0 openssl: + buildable: False externals: - spec: openssl@1.1.1k - prefix: /p/software/jusuf/stages/2023/software/OpenSSL/1.1 - pkgconf: - externals: - - spec: pkgconf@1.4.2 - prefix: /usr - automake: - externals: - - spec: automake@1.16.1 - prefix: /usr - tar: - externals: - - spec: tar@1.30 - prefix: /usr - gmake: - externals: - - spec: gmake@4.2.1 - prefix: /usr - openssh: - externals: - - spec: openssh@8.0p1 - prefix: /usr -# curl: -# externals: -# - spec: curl@7.61.1+gssapi+ldap+nghttp2 -# prefix: /usr -# git-lfs: -# externals: -# - spec: git-lfs@2.13.3 -# prefix: /usr - gawk: - externals: - - spec: gawk@4.2.1 - prefix: /usr - coreutils: - externals: - - spec: coreutils@8.30 - prefix: /usr - bison: - externals: - - spec: bison@3.0.4 - prefix: /usr - autoconf: - externals: - - spec: autoconf@2.69 - prefix: /usr -# packages: -# all: -# compiler: [gcc@11.2.0] -# python: -# buildable: False -# version: [3.9.6] -# externals: -# - spec: "python@3.9.6%gcc@11.2.0 arch=linux-rocky8-zen2" -# prefix: /p/software/jusuf/stages/2022/software/Python/3.9.6-GCCcore-11.2.0/ -# openssl: -# buildable: False -# version: [1.1.1k] -# externals: -# - spec: openssl@1.1.1k -# prefix: /p/software/jusuf/stages/2022/software/OpenSSL/1.1/ -# mpi: -# buildable: False -# openmpi: -# externals: -# - spec: "openmpi@4.1.2%gcc@11.2.0 arch=linux-rocky8-zen2" -# prefix: /p/software/jusuf/stages/2022/software/OpenMPI/4.1.2-GCC-11.2.0/ + prefix: /p/software/jusuf/stages/2024/software/OpenSSL/1.1 + numactl: + buildable: False + externals: + - spec: numactl@2.0.16 + prefix: /p/software/jusuf/stages/2024/software/numactl/2.0.16-GCCcore-12.3.0 + ucx: + buildable: False + externals: + - spec: ucx@1.15.0 + prefix: /p/software/jusuf/stages/2024/software/UCX/default-GCCcore-12.3.0 + xz: + buildable: False + externals: + - spec: xz@5.4.2 + prefix: /p/software/jusuf/stages/2024/software/XZ/5.4.2-GCCcore-12.3.0 + libxml2: + buildable: False + externals: + - spec: libxml2@2.11.4 + prefix: /p/software/jusuf/stages/2024/software/libxml2/2.11.4-GCCcore-12.3.0 + libevent: + buildable: False + externals: + - spec: libevent@2.1.12 + prefix: /p/software/jusuf/stages/2024/software/libevent/2.1.12-GCCcore-12.3.0 + libpciaccess: + buildable: False + externals: + - spec: libpciaccess@0.17 + prefix: /p/software/jusuf/stages/2024/software/libpciaccess/0.17-GCCcore-12.3.0 + hwloc: + buildable: False + externals: + - spec: hwloc@2.9.1 + prefix: /p/software/jusuf/stages/2024/software/hwloc/2.9.1-GCCcore-12.3.0 + pmix: + buildable: False + externals: + - spec: pmix@4.2.6 + prefix: /p/software/jusuf/stages/2024/software/PMIx/4.2.6-GCCcore-12.3.0