diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 693324c0fbb8a5b9113f3a84591a577021f5bb71..e4fab984b2607b7b391169d9953defc8df24e5e5 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -283,6 +283,9 @@ sync-gitlab-spack-instance: - spack env activate $SPACK_NFS_ENV - spack install -y -j2 --fresh --test root - spack reindex + # create kernel spec, so that the environment can be used in gitlab CI jobs + - RELEASE_NAME=$(case $CI_COMMIT_BRANCH in experimental_rel) echo ebrains-experimental;; ebrains*) echo ${CI_COMMIT_BRANCH:0:10}.${CI_COMMIT_BRANCH:11};; *) echo $CI_COMMIT_BRANCH;; esac); + - . create_JupyterLab_kernel.sh $SPACK_PATH_GITLAB $SPACK_NFS_ENV $RELEASE_NAME /mnt/ebrains_env after_script: - mkdir spack_logs - | diff --git a/create_JupyterLab_kernel.sh b/create_JupyterLab_kernel.sh index 4961eaa4f5aa4cedd0d2364aed4382a052e3c035..1b50b11b02619e7a7d590075e2511a984c575083 100644 --- a/create_JupyterLab_kernel.sh +++ b/create_JupyterLab_kernel.sh @@ -28,6 +28,8 @@ EOF # (2) append the necessary env variables for spack env and tools cat $INSTALLATION_ROOT/spack/var/spack/environments/$EBRAINS_SPACK_ENV/load_env.sh >> $KERNEL_PATH/bin/env.sh +# also copy the script so that it can be used independently: +cp $INSTALLATION_ROOT/spack/var/spack/environments/$EBRAINS_SPACK_ENV/load_env.sh $KERNEL_PATH/bin/ # (3) also add the user's .local locations to allow package installation at runtime, # and the location of python modules installed in the base docker Collab image