From f2e80d43bb605938d4abbbb60381fbf9c3f06d9a Mon Sep 17 00:00:00 2001
From: polarbean <harry.carey95@gmail.com>
Date: Wed, 21 Aug 2024 18:51:50 +0200
Subject: [PATCH] add PyPi information
---
PyNutil/main.py | 1 -
README.md | 5 ++++-
setup.py | 12 +++++++-----
3 files changed, 11 insertions(+), 7 deletions(-)
diff --git a/PyNutil/main.py b/PyNutil/main.py
index c7773fe..dd229bf 100644
--- a/PyNutil/main.py
+++ b/PyNutil/main.py
@@ -1,4 +1,3 @@
-from .metadata import metadata_loader
from .read_and_write import read_atlas_volume, write_points_to_meshview
from .coordinate_extraction import folder_to_atlas_space
from .counting_and_load import label_points, pixel_count_per_region
diff --git a/README.md b/README.md
index 141048a..0446102 100644
--- a/README.md
+++ b/README.md
@@ -5,7 +5,10 @@ PyNutil is a Python library for brain-wide quantification and spatial analysis o
For more information about the QUINT workflow:
https://quint-workflow.readthedocs.io/en/latest/
-
+# Installation
+```
+pip install PyNutil
+```
# Usage
As input, PyNutil requires:
1. An alignment JSON created with the QuickNII or VisuAlign software
diff --git a/setup.py b/setup.py
index bdc1e56..7ccfaa8 100644
--- a/setup.py
+++ b/setup.py
@@ -5,7 +5,7 @@ long_description = (this_directory / "README.md").read_text()
setup(
name="PyNutil",
- version='0.1.4',
+ version='0.1.1',
packages=find_packages(),
license='MIT',
description='a package to translate data between common coordinate templates',
@@ -13,10 +13,12 @@ setup(
long_description_content_type='text/markdown',
install_requires=[
'numpy',
- 'nibabel',
- 'scipy',
- 'networkx',
+ 'brainglobe_atlasapi',
'pandas',
- 'requests'
+ 'requests',
+ 'pynrrd',
+ 'xmltodict',
+ 'opencv-python',
+ 'scikit-image'
]
)
\ No newline at end of file
--
GitLab