diff --git a/README.md b/README.md index aef431c4bbcad46f000ffb50ab99d7f50a8d076a..496507bd7a4d7a0006f807e50e1e78644e6ac815 100644 --- a/README.md +++ b/README.md @@ -63,7 +63,10 @@ If you use an atlas which has a hemisphere map (All brainglobe atlases have this ## Damage Quantification The QCAlign tool allows you to mark damaged areas on your section. This means that these damaged areas are excluded from your point clouds. In addition, PyNutil will seperately quantify damaged and undamaged areas. Note the undamaged, and damaged column names. # Meshview json files -PyNutil will produce meshview json files +PyNutil will produce meshview json files. This can be opened in [MeshView for the Allen Mouse](https://meshview.apps.ebrains.eu/?atlas=ABA_Mouse_CCFv3_2017_25um) or for [the WaxHolm Rat](https://meshview.apps.ebrains.eu/) +<video src="docs/assets/MeshView.mp4" autoplay loop muted controls style="max-width: 100%;"> + Your browser does not support embedded videos. +</video> # Interpreting the Results Each column name has the following definition | Column | Definition | diff --git a/docs/assets/MeshView.mp4 b/docs/assets/MeshView.mp4 new file mode 100644 index 0000000000000000000000000000000000000000..51c19d36bcda8fd22f926863ce895176d7102139 Binary files /dev/null and b/docs/assets/MeshView.mp4 differ