From df613fa7012ea193d98a331f5a12b29cbcbd3d1d Mon Sep 17 00:00:00 2001
From: polarbean <harry.carey95@gmail.com>
Date: Mon, 24 Mar 2025 17:17:28 +0100
Subject: [PATCH] remove type in file operations
---
PyNutil/io/file_operations.py | 23 ++++++++++++++++++++++-
1 file changed, 22 insertions(+), 1 deletion(-)
diff --git a/PyNutil/io/file_operations.py b/PyNutil/io/file_operations.py
index b4be5b1..5c02874 100644
--- a/PyNutil/io/file_operations.py
+++ b/PyNutil/io/file_operations.py
@@ -107,6 +107,28 @@ def save_analysis_output(
"custom_region_path": custom_region_path,
}
+ pixel_points,
+ centroids,
+ label_df,
+ per_section_df,
+ labeled_points,
+ labeled_points_centroids,
+ points_hemi_labels,
+ centroids_hemi_labels,
+ points_len,
+ centroids_len,
+ segmentation_filenames,
+ atlas_labels,
+ output_folder,
+ segmentation_folder=None,
+ alignment_json=None,
+ colour=None,
+ atlas_name=None,
+ custom_region_path=None,
+ atlas_path=None,
+ label_path=None,
+ settings_file=None,
+ prepend=None,
# Add atlas information to settings
if atlas_name:
settings_dict["atlas_name"] = atlas_name
@@ -118,7 +140,6 @@ def save_analysis_output(
settings_dict["settings_file"] = settings_file
if custom_region_path:
settings_dict["custom_region_path"] = custom_region_path
- if
# Write settings to file
settings_file_path = os.path.join(output_folder, "pynutil_settings.json")
with open(settings_file_path, "w") as f:
--
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