diff --git a/PyNutil/testing.py b/PyNutil/testing.py new file mode 100644 index 0000000000000000000000000000000000000000..e38dda5a57586fa65a287e6cc173990a4a449e4f --- /dev/null +++ b/PyNutil/testing.py @@ -0,0 +1,23 @@ + +import subprocess +import sys +import os +import glob + +directory = ('../test') + +""" +for filename in os.scandir(directory): + if filename.is_file: + print(filename.path) +""" + +directory = ('../test') + +for filename in os.scandir(directory): + if filename.path.endswith(".json") and filename.is_file: + print(filename.path) + + + + diff --git a/annotation_volumes/AllenMouseBrain_Atlas_CCF_2015.label b/annotation_volumes/AllenMouseBrain_Atlas_CCF_2015.label new file mode 100644 index 0000000000000000000000000000000000000000..990cbe2d2dc6a9554aba1d000d04dbec10c0d371 --- /dev/null +++ b/annotation_volumes/AllenMouseBrain_Atlas_CCF_2015.label @@ -0,0 +1,1302 @@ +################################################ +# ITK-SnAP Label Description File +# File format: +# IDX -R- -G- -B- -A-- VIS MSH LABEL +# Fields: +# IDX: Zero-based index +# -R-: Red color component (0..255) +# -G-: Green color component (0..255) +# -B-: Blue color component (0..255) +# -A-: Label transparency (0.00 .. 1.00) +# VIS: Label visibility (0 or 1) +# IDX: Label mesh visibility (0 or 1) +# LABEL: Label description +################################################ + 0 0 0 0 0 0 0 "Clear Label" +997 255 255 255 1 1 1 "root" +8 191 218 227 1 1 1 "Basic cell groups and regions" +567 176 240 255 1 1 1 "Cerebrum" +688 176 255 184 1 1 1 "Cerebral cortex" +695 112 255 112 1 1 1 "Cortical plate" +315 112 255 113 1 1 1 "Isocortex" +184 38 143 69 1 1 1 "Frontal pole, cerebral cortex" +68 38 143 69 1 1 1 "Frontal pole, layer 1" +667 38 143 69 1 1 1 "Frontal pole, layer 2/3" +500 31 157 90 1 1 1 "Somatomotor areas" +107 31 157 90 1 1 1 "Somatomotor areas, Layer 1" +219 31 157 90 1 1 1 "Somatomotor areas, Layer 2/3" +299 31 157 90 1 1 1 "Somatomotor areas, Layer 5" +644 31 157 90 1 1 1 "Somatomotor areas, Layer 6a" +947 31 157 90 1 1 1 "Somatomotor areas, Layer 6b" +985 31 157 90 1 1 1 "Primary motor area" +320 31 157 90 1 1 1 "Primary motor area, Layer 1" +943 31 157 90 1 1 1 "Primary motor area, Layer 2/3" +648 31 157 90 1 1 1 "Primary motor area, Layer 5" +844 31 157 90 1 1 1 "Primary motor area, Layer 6a" +882 31 157 90 1 1 1 "Primary motor area, Layer 6b" +993 31 157 90 1 1 1 "Secondary motor area" +656 31 157 90 1 1 1 "Secondary motor area, layer 1" +962 31 157 90 1 1 1 "Secondary motor area, layer 2/3" +767 31 157 90 1 1 1 "Secondary motor area, layer 5" +1021 31 157 90 1 1 1 "Secondary motor area, layer 6a" +1085 31 157 90 1 1 1 "Secondary motor area, layer 6b" +453 24 128 100 1 1 1 "Somatosensory areas" +12993 24 128 100 1 1 1 "Somatosensory areas, layer 1" +12994 24 128 100 1 1 1 "Somatosensory areas, layer 2/3" +12995 24 128 100 1 1 1 "Somatosensory areas, layer 4" +12996 24 128 100 1 1 1 "Somatosensory areas, layer 5" +12997 24 128 100 1 1 1 "Somatosensory areas, layer 6a" +12998 24 128 100 1 1 1 "Somatosensory areas, layer 6b" +322 24 128 100 1 1 1 "Primary somatosensory area" +793 24 128 100 1 1 1 "Primary somatosensory area, layer 1" +346 24 128 100 1 1 1 "Primary somatosensory area, layer 2/3" +865 24 128 100 1 1 1 "Primary somatosensory area, layer 4" +921 24 128 100 1 1 1 "Primary somatosensory area, layer 5" +686 24 128 100 1 1 1 "Primary somatosensory area, layer 6a" +719 24 128 100 1 1 1 "Primary somatosensory area, layer 6b" +353 24 128 100 1 1 1 "Primary somatosensory area, nose" +558 24 128 100 1 1 1 "Primary somatosensory area, nose, layer 1" +838 24 128 100 1 1 1 "Primary somatosensory area, nose, layer 2/3" +654 24 128 100 1 1 1 "Primary somatosensory area, nose, layer 4" +702 24 128 100 1 1 1 "Primary somatosensory area, nose, layer 5" +889 24 128 100 1 1 1 "Primary somatosensory area, nose, layer 6a" +929 24 128 100 1 1 1 "Primary somatosensory area, nose, layer 6b" +329 24 128 100 1 1 1 "Primary somatosensory area, barrel field" +981 24 128 100 1 1 1 "Primary somatosensory area, barrel field, layer 1" +201 24 128 100 1 1 1 "Primary somatosensory area, barrel field, layer 2/3" +1047 24 128 100 1 1 1 "Primary somatosensory area, barrel field, layer 4" +1070 24 128 100 1 1 1 "Primary somatosensory area, barrel field, layer 5" +1038 24 128 100 1 1 1 "Primary somatosensory area, barrel field, layer 6a" +1062 24 128 100 1 1 1 "Primary somatosensory area, barrel field, layer 6b" +480149202 24 128 100 1 1 1 "Rostrolateral lateral visual area" +480149206 24 128 100 1 1 1 "Rostrolateral lateral visual area, layer 1" +480149210 24 128 100 1 1 1 "Rostrolateral lateral visual area, layer 2/3" +480149214 24 128 100 1 1 1 "Rostrolateral lateral visual area, layer 4" +480149218 24 128 100 1 1 1 "Rostrolateral lateral visual area,layer 5" +480149222 24 128 100 1 1 1 "Rostrolateral lateral visual area, layer 6a" +480149226 24 128 100 1 1 1 "Rostrolateral lateral visual area, layer 6b" +337 24 128 100 1 1 1 "Primary somatosensory area, lower limb" +1030 24 128 100 1 1 1 "Primary somatosensory area, lower limb, layer 1" +113 24 128 100 1 1 1 "Primary somatosensory area, lower limb, layer 2/3" +1094 24 128 100 1 1 1 "Primary somatosensory area, lower limb, layer 4" +1128 24 128 100 1 1 1 "Primary somatosensory area, lower limb, layer 5" +478 24 128 100 1 1 1 "Primary somatosensory area, lower limb, layer 6a" +510 24 128 100 1 1 1 "Primary somatosensory area, lower limb, layer 6b" +345 24 128 100 1 1 1 "Primary somatosensory area, mouth" +878 24 128 100 1 1 1 "Primary somatosensory area, mouth, layer 1" +657 24 128 100 1 1 1 "Primary somatosensory area, mouth, layer 2/3" +950 24 128 100 1 1 1 "Primary somatosensory area, mouth, layer 4" +974 24 128 100 1 1 1 "Primary somatosensory area, mouth, layer 5" +1102 24 128 100 1 1 1 "Primary somatosensory area, mouth, layer 6a" +2 24 128 100 1 1 1 "Primary somatosensory area, mouth, layer 6b" +369 24 128 100 1 1 1 "Primary somatosensory area, upper limb" +450 24 128 100 1 1 1 "Primary somatosensory area, upper limb, layer 1" +854 24 128 100 1 1 1 "Primary somatosensory area, upper limb, layer 2/3" +577 24 128 100 1 1 1 "Primary somatosensory area, upper limb, layer 4" +625 24 128 100 1 1 1 "Primary somatosensory area, upper limb, layer 5" +945 24 128 100 1 1 1 "Primary somatosensory area, upper limb, layer 6a" +1026 24 128 100 1 1 1 "Primary somatosensory area, upper limb, layer 6b" +361 24 128 100 1 1 1 "Primary somatosensory area, trunk" +1006 24 128 100 1 1 1 "Primary somatosensory area, trunk, layer 1" +670 24 128 100 1 1 1 "Primary somatosensory area, trunk, layer 2/3" +1086 24 128 100 1 1 1 "Primary somatosensory area, trunk, layer 4" +1111 24 128 100 1 1 1 "Primary somatosensory area, trunk, layer 5" +9 24 128 100 1 1 1 "Primary somatosensory area, trunk, layer 6a" +461 24 128 100 1 1 1 "Primary somatosensory area, trunk, layer 6b" +182305689 24 128 100 1 1 1 "Primary somatosensory area, unassigned" +182305693 24 128 100 1 1 1 "Primary somatosensory area, unassigned, layer 1" +182305697 24 128 100 1 1 1 "Primary somatosensory area, unassigned, layer 2/3" +182305701 24 128 100 1 1 1 "Primary somatosensory area, unassigned, layer 4" +182305705 24 128 100 1 1 1 "Primary somatosensory area, unassigned, layer 5" +182305709 24 128 100 1 1 1 "Primary somatosensory area, unassigned, layer 6a" +182305713 24 128 100 1 1 1 "Primary somatosensory area, unassigned, layer 6b" +378 24 128 100 1 1 1 "Supplemental somatosensory area" +873 24 128 100 1 1 1 "Supplemental somatosensory area, layer 1" +806 24 128 100 1 1 1 "Supplemental somatosensory area, layer 2/3" +1035 24 128 100 1 1 1 "Supplemental somatosensory area, layer 4" +1090 24 128 100 1 1 1 "Supplemental somatosensory area, layer 5" +862 24 128 100 1 1 1 "Supplemental somatosensory area, layer 6a" +893 24 128 100 1 1 1 "Supplemental somatosensory area, layer 6b" +1057 0 156 117 1 1 1 "Gustatory areas" +36 0 156 117 1 1 1 "Gustatory areas, layer 1" +180 0 156 117 1 1 1 "Gustatory areas, layer 2/3" +148 0 156 117 1 1 1 "Gustatory areas, layer 4" +187 0 156 117 1 1 1 "Gustatory areas, layer 5" +638 0 156 117 1 1 1 "Gustatory areas, layer 6a" +662 0 156 117 1 1 1 "Gustatory areas, layer 6b" +677 17 173 131 1 1 1 "Visceral area" +897 17 173 131 1 1 1 "Visceral area, layer 1" +1106 17 173 131 1 1 1 "Visceral area, layer 2/3" +1010 17 173 131 1 1 1 "Visceral area, layer 4" +1058 17 173 131 1 1 1 "Visceral area, layer 5" +857 17 173 131 1 1 1 "Visceral area, layer 6a" +849 17 173 131 1 1 1 "Visceral area, layer 6b" +247 1 147 153 1 1 1 "Auditory areas" +1011 1 147 153 1 1 1 "Dorsal auditory area" +527 1 147 153 1 1 1 "Dorsal auditory area, layer 1" +600 1 147 153 1 1 1 "Dorsal auditory area, layer 2/3" +678 1 147 153 1 1 1 "Dorsal auditory area, layer 4" +252 1 147 153 1 1 1 "Dorsal auditory area, layer 5" +156 1 147 153 1 1 1 "Dorsal auditory area, layer 6a" +243 1 147 153 1 1 1 "Dorsal auditory area, layer 6b" +480149230 1 147 153 1 1 1 "Laterolateral anterior visual area" +480149234 1 147 153 1 1 1 "Laterolateral anterior visual area, layer 1" +480149238 1 147 153 1 1 1 "Laterolateral anterior visual area, layer 2/3" +480149242 1 147 153 1 1 1 "Laterolateral anterior visual area, layer 4" +480149246 1 147 153 1 1 1 "Laterolateral anterior visual area,layer 5" +480149250 1 147 153 1 1 1 "Laterolateral anterior visual area, layer 6a" +480149254 1 147 153 1 1 1 "Laterolateral anterior visual area, layer 6b" +1002 1 147 153 1 1 1 "Primary auditory area" +735 1 147 153 1 1 1 "Primary auditory area, layer 1" +251 1 147 153 1 1 1 "Primary auditory area, layer 2/3" +816 1 147 153 1 1 1 "Primary auditory area, layer 4" +847 1 147 153 1 1 1 "Primary auditory area, layer 5" +954 1 147 153 1 1 1 "Primary auditory area, layer 6a" +1005 1 147 153 1 1 1 "Primary auditory area, layer 6b" +1027 1 147 153 1 1 1 "Posterior auditory area" +696 1 147 153 1 1 1 "Posterior auditory area, layer 1" +643 1 147 153 1 1 1 "Posterior auditory area, layer 2/3" +759 1 147 153 1 1 1 "Posterior auditory area, layer 4" +791 1 147 153 1 1 1 "Posterior auditory area, layer 5" +249 1 147 153 1 1 1 "Posterior auditory area, layer 6a" +456 1 147 153 1 1 1 "Posterior auditory area, layer 6b" +1018 1 147 153 1 1 1 "Ventral auditory area" +959 1 147 153 1 1 1 "Ventral auditory area, layer 1" +755 1 147 153 1 1 1 "Ventral auditory area, layer 2/3" +990 1 147 153 1 1 1 "Ventral auditory area, layer 4" +1023 1 147 153 1 1 1 "Ventral auditory area, layer 5" +520 1 147 153 1 1 1 "Ventral auditory area, layer 6a" +598 1 147 153 1 1 1 "Ventral auditory area, layer 6b" +669 8 133 140 1 1 1 "Visual areas" +801 8 133 140 1 1 1 "Visual areas, layer 1" +561 8 133 140 1 1 1 "Visual areas, layer 2/3" +913 8 133 140 1 1 1 "Visual areas, layer 4" +937 8 133 140 1 1 1 "Visual areas, layer 5" +457 8 133 140 1 1 1 "Visual areas, layer 6a" +497 8 133 140 1 1 1 "Visual areas, layer 6b" +402 8 133 140 1 1 1 "Anterolateral visual area" +1074 8 133 140 1 1 1 "Anterolateral visual area, layer 1" +905 8 133 140 1 1 1 "Anterolateral visual area, layer 2/3" +1114 8 133 140 1 1 1 "Anterolateral visual area, layer 4" +233 8 133 140 1 1 1 "Anterolateral visual area, layer 5" +601 8 133 140 1 1 1 "Anterolateral visual area, layer 6a" +649 8 133 140 1 1 1 "Anterolateral visual area, layer 6b" +394 8 133 140 1 1 1 "Anteromedial visual area" +281 8 133 140 1 1 1 "Anteromedial visual area, layer 1" +1066 8 133 140 1 1 1 "Anteromedial visual area, layer 2/3" +401 8 133 140 1 1 1 "Anteromedial visual area, layer 4" +433 8 133 140 1 1 1 "Anteromedial visual area, layer 5" +1046 8 133 140 1 1 1 "Anteromedial visual area, layer 6a" +441 8 133 140 1 1 1 "Anteromedial visual area, layer 6b" +409 8 133 140 1 1 1 "Lateral visual area" +421 8 133 140 1 1 1 "Lateral visual area, layer 1" +973 8 133 140 1 1 1 "Lateral visual area, layer 2/3" +573 8 133 140 1 1 1 "Lateral visual area, layer 4" +613 8 133 140 1 1 1 "Lateral visual area, layer 5" +74 8 133 140 1 1 1 "Lateral visual area, layer 6a" +121 8 133 140 1 1 1 "Lateral visual area, layer 6b" +385 8 133 140 1 1 1 "Primary visual area" +593 8 133 140 1 1 1 "Primary visual area, layer 1" +821 8 133 140 1 1 1 "Primary visual area, layer 2/3" +721 8 133 140 1 1 1 "Primary visual area, layer 4" +778 8 133 140 1 1 1 "Primary visual area, layer 5" +33 8 133 140 1 1 1 "Primary visual area, layer 6a" +305 8 133 140 1 1 1 "Primary visual area, layer 6b" +425 8 133 140 1 1 1 "Posterolateral visual area" +750 8 133 140 1 1 1 "Posterolateral visual area, layer 1" +269 8 133 140 1 1 1 "Posterolateral visual area, layer 2/3" +869 8 133 140 1 1 1 "Posterolateral visual area, layer 4" +902 8 133 140 1 1 1 "Posterolateral visual area, layer 5" +377 8 133 140 1 1 1 "Posterolateral visual area, layer 6a" +393 8 133 140 1 1 1 "Posterolateral visual area, layer 6b" +533 8 133 140 1 1 1 "posteromedial visual area" +805 8 133 140 1 1 1 "posteromedial visual area, layer 1" +41 8 133 140 1 1 1 "posteromedial visual area, layer 2/3" +501 8 133 140 1 1 1 "posteromedial visual area, layer 4" +565 8 133 140 1 1 1 "posteromedial visual area, layer 5" +257 8 133 140 1 1 1 "posteromedial visual area, layer 6a" +469 8 133 140 1 1 1 "posteromedial visual area, layer 6b" +312782574 8 133 140 1 1 1 "Laterointermediate area" +312782578 8 133 140 1 1 1 "Laterointermediate area, layer 1" +312782582 8 133 140 1 1 1 "Laterointermediate area, layer 2/3" +312782586 8 133 140 1 1 1 "Laterointermediate area, layer 4" +312782590 8 133 140 1 1 1 "Laterointermediate area, layer 5" +312782594 8 133 140 1 1 1 "Laterointermediate area, layer 6a" +312782598 8 133 140 1 1 1 "Laterointermediate area, layer 6b" +312782628 8 133 140 1 1 1 "Postrhinal area" +312782632 8 133 140 1 1 1 "Postrhinal area, layer 1" +312782636 8 133 140 1 1 1 "Postrhinal area, layer 2/3" +312782640 8 133 140 1 1 1 "Postrhinal area, layer 4" +312782644 8 133 140 1 1 1 "Postrhinal area, layer 5" +312782648 8 133 140 1 1 1 "Postrhinal area, layer 6a" +312782652 8 133 140 1 1 1 "Postrhinal area, layer 6b" +31 64 166 102 1 1 1 "Anterior cingulate area" +572 64 166 102 1 1 1 "Anterior cingulate area, layer 1" +1053 64 166 102 1 1 1 "Anterior cingulate area, layer 2/3" +739 64 166 102 1 1 1 "Anterior cingulate area, layer 5" +179 64 166 102 1 1 1 "Anterior cingulate area, layer 6a" +227 64 166 102 1 1 1 "Anterior cingulate area, layer 6b" +39 64 166 102 1 1 1 "Anterior cingulate area, dorsal part" +935 64 166 102 1 1 1 "Anterior cingulate area, dorsal part, layer 1" +211 64 166 102 1 1 1 "Anterior cingulate area, dorsal part, layer 2/3" +1015 64 166 102 1 1 1 "Anterior cingulate area, dorsal part, layer 5" +919 64 166 102 1 1 1 "Anterior cingulate area, dorsal part, layer 6a" +927 64 166 102 1 1 1 "Anterior cingulate area, dorsal part, layer 6b" +48 64 166 102 1 1 1 "Anterior cingulate area, ventral part" +588 64 166 102 1 1 1 "Anterior cingulate area, ventral part, layer 1" +296 64 166 102 1 1 1 "Anterior cingulate area, ventral part, layer 2/3" +772 64 166 102 1 1 1 "Anterior cingulate area, ventral part, layer 5" +810 64 166 102 1 1 1 "Anterior cingulate area, ventral part, 6a" +819 64 166 102 1 1 1 "Anterior cingulate area, ventral part, 6b" +972 47 168 80 1 1 1 "Prelimbic area" +171 47 168 80 1 1 1 "Prelimbic area, layer 1" +195 47 168 80 1 1 1 "Prelimbic area, layer 2" +304 47 168 80 1 1 1 "Prelimbic area, layer 2/3" +363 47 168 80 1 1 1 "Prelimbic area, layer 5" +84 47 168 80 1 1 1 "Prelimbic area, layer 6a" +132 47 168 80 1 1 1 "Prelimbic area, layer 6b" +44 89 179 99 1 1 1 "Infralimbic area" +707 89 179 99 1 1 1 "Infralimbic area, layer 1" +747 89 179 99 1 1 1 "Infralimbic area, layer 2" +556 89 179 99 1 1 1 "Infralimbic area, layer 2/3" +827 89 179 99 1 1 1 "Infralimbic area, layer 5" +1054 89 179 99 1 1 1 "Infralimbic area, layer 6a" +1081 89 179 99 1 1 1 "Infralimbic area, layer 6b" +714 36 138 94 1 1 1 "Orbital area" +264 36 138 94 1 1 1 "Orbital area, layer 1" +492 36 138 94 1 1 1 "Orbital area, layer 2/3" +352 36 138 94 1 1 1 "Orbital area, layer 5" +476 36 138 94 1 1 1 "Orbital area, layer 6a" +516 36 138 94 1 1 1 "Orbital area, layer 6b" +723 36 138 94 1 1 1 "Orbital area, lateral part" +448 36 138 94 1 1 1 "Orbital area, lateral part, layer 1" +412 36 138 94 1 1 1 "Orbital area, lateral part, layer 2/3" +630 36 138 94 1 1 1 "Orbital area, lateral part, layer 5" +440 36 138 94 1 1 1 "Orbital area, lateral part, layer 6a" +488 36 138 94 1 1 1 "Orbital area, lateral part, layer 6b" +731 36 138 94 1 1 1 "Orbital area, medial part" +484 36 138 94 1 1 1 "Orbital area, medial part, layer 1" +524 36 138 94 1 1 1 "Orbital area, medial part, layer 2" +582 36 138 94 1 1 1 "Orbital area, medial part, layer 2/3" +620 36 138 94 1 1 1 "Orbital area, medial part, layer 5" +910 36 138 94 1 1 1 "Orbital area, medial part, layer 6a" +738 36 138 94 1 1 1 "Orbital area, ventral part" +746 36 138 94 1 1 1 "Orbital area, ventrolateral part" +969 36 138 94 1 1 1 "Orbital area, ventrolateral part, layer 1" +288 36 138 94 1 1 1 "Orbital area, ventrolateral part, layer 2/3" +1125 36 138 94 1 1 1 "Orbital area, ventrolateral part, layer 5" +608 36 138 94 1 1 1 "Orbital area, ventrolateral part, layer 6a" +680 36 138 94 1 1 1 "Orbital area, ventrolateral part, layer 6b" +95 33 152 102 1 1 1 "Agranular insular area" +104 33 152 102 1 1 1 "Agranular insular area, dorsal part" +996 33 152 102 1 1 1 "Agranular insular area, dorsal part, layer 1" +328 33 152 102 1 1 1 "Agranular insular area, dorsal part, layer 2/3" +1101 33 152 102 1 1 1 "Agranular insular area, dorsal part, layer 5" +783 33 152 102 1 1 1 "Agranular insular area, dorsal part, layer 6a" +831 33 152 102 1 1 1 "Agranular insular area, dorsal part, layer 6b" +111 33 152 102 1 1 1 "Agranular insular area, posterior part" +120 33 152 102 1 1 1 "Agranular insular area, posterior part, layer 1" +163 33 152 102 1 1 1 "Agranular insular area, posterior part, layer 2/3" +344 33 152 102 1 1 1 "Agranular insular area, posterior part, layer 5" +314 33 152 102 1 1 1 "Agranular insular area, posterior part, layer 6a" +355 33 152 102 1 1 1 "Agranular insular area, posterior part, layer 6b" +119 33 152 102 1 1 1 "Agranular insular area, ventral part" +704 33 152 102 1 1 1 "Agranular insular area, ventral part, layer 1" +694 33 152 102 1 1 1 "Agranular insular area, ventral part, layer 2/3" +800 33 152 102 1 1 1 "Agranular insular area, ventral part, layer 5" +675 33 152 102 1 1 1 "Agranular insular area, ventral part, layer 6a" +699 33 152 102 1 1 1 "Agranular insular area, ventral part, layer 6b" +254 26 166 152 1 1 1 "Retrosplenial area" +894 26 166 152 1 1 1 "Retrosplenial area, lateral agranular part" +671 26 166 152 1 1 1 "Retrosplenial area, lateral agranular part, layer 1" +965 26 166 152 1 1 1 "Retrosplenial area, lateral agranular part, layer 2/3" +774 26 166 152 1 1 1 "Retrosplenial area, lateral agranular part, layer 5" +906 26 166 152 1 1 1 "Retrosplenial area, lateral agranular part, layer 6a" +279 26 166 152 1 1 1 "Retrosplenial area, lateral agranular part, layer 6b" +480149258 26 166 152 1 1 1 "Mediomedial anterior visual area" +480149262 26 166 152 1 1 1 "Mediomedial anterior visual area, layer 1" +480149266 26 166 152 1 1 1 "Mediomedial anterior visual area, layer 2/3" +480149270 26 166 152 1 1 1 "Mediomedial anterior visual area, layer 4" +480149274 26 166 152 1 1 1 "Mediomedial anterior visual area,layer 5" +480149278 26 166 152 1 1 1 "Mediomedial anterior visual area, layer 6a" +480149282 26 166 152 1 1 1 "Mediomedial anterior visual area, layer 6b" +480149286 26 166 152 1 1 1 "Mediomedial posterior visual area" +480149290 26 166 152 1 1 1 "Mediomedial posterior visual area, layer 1" +480149294 26 166 152 1 1 1 "Mediomedial posterior visual area, layer 2/3" +480149298 26 166 152 1 1 1 "Mediomedial posterior visual area, layer 4" +480149302 26 166 152 1 1 1 "Mediomedial posterior visual area,layer 5" +480149306 26 166 152 1 1 1 "Mediomedial posterior visual area, layer 6a" +480149310 26 166 152 1 1 1 "Mediomedial posterior visual area, layer 6b" +480149314 26 166 152 1 1 1 "Medial visual area" +480149318 26 166 152 1 1 1 "Medial visual area, layer 1" +480149322 26 166 152 1 1 1 "Medial visual area, layer 2/3" +480149326 26 166 152 1 1 1 "Medial visual area, layer 4" +480149330 26 166 152 1 1 1 "Medial visual area,layer 5" +480149334 26 166 152 1 1 1 "Medial visual area, layer 6a" +480149338 26 166 152 1 1 1 "Medial visual area, layer 6b" +879 26 166 152 1 1 1 "Retrosplenial area, dorsal part" +442 26 166 152 1 1 1 "Retrosplenial area, dorsal part, layer 1" +434 26 166 152 1 1 1 "Retrosplenial area, dorsal part, layer 2/3" +545 26 166 152 1 1 1 "Retrosplenial area, dorsal part, layer 4" +610 26 166 152 1 1 1 "Retrosplenial area, dorsal part, layer 5" +274 26 166 152 1 1 1 "Retrosplenial area, dorsal part, layer 6a" +330 26 166 152 1 1 1 "Retrosplenial area, dorsal part, layer 6b" +886 26 166 152 1 1 1 "Retrosplenial area, ventral part" +542 26 166 152 1 1 1 "Retrosplenial area, ventral part, layer 1" +606 26 166 152 1 1 1 "Retrosplenial area, ventral part, layer 2" +430 26 166 152 1 1 1 "Retrosplenial area, ventral part, layer 2/3" +687 26 166 152 1 1 1 "Retrosplenial area, ventral part, layer 5" +590 26 166 152 1 1 1 "Retrosplenial area, ventral part, layer 6a" +622 26 166 152 1 1 1 "Retrosplenial area, ventral part, layer 6b" +22 0 159 172 1 1 1 "Posterior parietal association areas" +532 0 159 172 1 1 1 "Posterior parietal association areas, layer 1" +241 0 159 172 1 1 1 "Posterior parietal association areas, layer 2/3" +635 0 159 172 1 1 1 "Posterior parietal association areas, layer 4" +683 0 159 172 1 1 1 "Posterior parietal association areas, layer 5" +308 0 159 172 1 1 1 "Posterior parietal association areas, layer 6a" +340 0 159 172 1 1 1 "Posterior parietal association areas, layer 6b" +312782546 0 159 172 1 1 1 "Anterior area" +312782550 0 159 172 1 1 1 "Anterior area, layer 1" +312782554 0 159 172 1 1 1 "Anterior area, layer 2/3" +312782558 0 159 172 1 1 1 "Anterior area, layer 4" +312782562 0 159 172 1 1 1 "Anterior area, layer 5" +312782566 0 159 172 1 1 1 "Anterior area, layer 6a" +312782570 0 159 172 1 1 1 "Anterior area, layer 6b" +417 0 159 172 1 1 1 "Rostrolateral visual area" +312782604 0 159 172 1 1 1 "Rostrolateral area, layer 1" +312782608 0 159 172 1 1 1 "Rostrolateral area, layer 2/3" +312782612 0 159 172 1 1 1 "Rostrolateral area, layer 4" +312782616 0 159 172 1 1 1 "Rostrolateral area, layer 5" +312782620 0 159 172 1 1 1 "Rostrolateral area, layer 6a" +312782624 0 159 172 1 1 1 "Rostrolateral area, layer 6b" +541 21 176 179 1 1 1 "Temporal association areas" +97 21 176 179 1 1 1 "Temporal association areas, layer 1" +1127 21 176 179 1 1 1 "Temporal association areas, layer 2/3" +234 21 176 179 1 1 1 "Temporal association areas, layer 4" +289 21 176 179 1 1 1 "Temporal association areas, layer 5" +729 21 176 179 1 1 1 "Temporal association areas, layer 6a" +786 21 176 179 1 1 1 "Temporal association areas, layer 6b" +922 14 150 132 1 1 1 "Perirhinal area" +335 14 150 132 1 1 1 "Perirhinal area, layer 6a" +368 14 150 132 1 1 1 "Perirhinal area, layer 6b" +540 14 150 132 1 1 1 "Perirhinal area, layer 1" +692 14 150 132 1 1 1 "Perirhinal area, layer 5" +888 14 150 132 1 1 1 "Perirhinal area, layer 2/3" +895 13 159 145 1 1 1 "Ectorhinal area" +836 13 159 145 1 1 1 "Ectorhinal area/Layer 1" +427 13 159 145 1 1 1 "Ectorhinal area/Layer 2/3" +988 13 159 145 1 1 1 "Ectorhinal area/Layer 5" +977 13 159 145 1 1 1 "Ectorhinal area/Layer 6a" +1045 13 159 145 1 1 1 "Ectorhinal area/Layer 6b" +698 154 210 189 1 1 1 "Olfactory areas" +507 154 210 189 1 1 1 "Main olfactory bulb" +212 130 199 174 1 1 1 "Main olfactory bulb, glomerular layer" +220 130 199 174 1 1 1 "Main olfactory bulb, granule layer" +228 154 210 189 1 1 1 "Main olfactory bulb, inner plexiform layer" +236 130 199 174 1 1 1 "Main olfactory bulb, mitral layer" +244 154 210 189 1 1 1 "Main olfactory bulb, outer plexiform layer" +151 157 240 210 1 1 1 "Accessory olfactory bulb" +188 157 240 210 1 1 1 "Accessory olfactory bulb, glomerular layer" +196 149 228 200 1 1 1 "Accessory olfactory bulb, granular layer" +204 157 240 210 1 1 1 "Accessory olfactory bulb, mitral layer" +159 84 191 148 1 1 1 "Anterior olfactory nucleus" +167 84 191 148 1 1 1 "Anterior olfactory nucleus, dorsal part" +175 84 191 148 1 1 1 "Anterior olfactory nucleus, external part" +183 84 191 148 1 1 1 "Anterior olfactory nucleus, lateral part" +191 84 191 148 1 1 1 "Anterior olfactory nucleus, medial part" +199 84 191 148 1 1 1 "Anterior olfactory nucleus, posteroventral part" +160 84 191 148 1 1 1 "Anterior olfactory nucleus, layer 1" +168 84 191 148 1 1 1 "Anterior olfactory nucleus, layer 2" +589 98 208 159 1 1 1 "Taenia tecta" +597 98 208 159 1 1 1 "Taenia tecta, dorsal part" +297 98 208 159 1 1 1 "Taenia tecta, dorsal part, layers 1-4" +1034 98 208 159 1 1 1 "Taenia tecta, dorsal part, layer 1" +1042 98 208 159 1 1 1 "Taenia tecta, dorsal part, layer 2" +1050 98 208 159 1 1 1 "Taenia tecta, dorsal part, layer 3" +1059 98 208 159 1 1 1 "Taenia tecta, dorsal part, layer 4" +605 98 208 159 1 1 1 "Taenia tecta, ventral part" +306 98 208 159 1 1 1 "Taenia tecta, ventral part, layers 1-3" +1067 98 208 159 1 1 1 "Taenia tecta, ventral part, layer 1" +1075 98 208 159 1 1 1 "Taenia tecta, ventral part, layer 2" +1082 98 208 159 1 1 1 "Taenia tecta, ventral part, layer 3" +814 164 218 164 1 1 1 "Dorsal peduncular area" +496 164 218 164 1 1 1 "Dorsal peduncular area, layer 1" +535 164 218 164 1 1 1 "Dorsal peduncular area, layer 2" +360 164 218 164 1 1 1 "Dorsal peduncular area, layer 2/3" +646 164 218 164 1 1 1 "Dorsal peduncular area, layer 5" +267 164 218 164 1 1 1 "Dorsal peduncular area, layer 6a" +961 106 203 186 1 1 1 "Piriform area" +152 106 203 186 1 1 1 "Piriform area, layers 1-3" +276 106 203 186 1 1 1 "Piriform area, molecular layer" +284 106 203 186 1 1 1 "Piriform area, pyramidal layer" +291 106 203 186 1 1 1 "Piriform area, polymorph layer" +619 149 228 200 1 1 1 "Nucleus of the lateral olfactory tract" +392 149 228 200 1 1 1 "Nucleus of the lateral olfactory tract, layers 1-3" +260 149 228 200 1 1 1 "Nucleus of the lateral olfactory tract, molecular layer" +268 149 228 200 1 1 1 "Nucleus of the lateral olfactory tract, pyramidal layer" +1139 149 228 200 1 1 1 "Nucleus of the lateral olfactory tract, layer 3" +631 97 231 183 1 1 1 "Cortical amygdalar area" +639 97 231 183 1 1 1 "Cortical amygdalar area, anterior part" +192 97 231 183 1 1 1 "Cortical amygdalar area, anterior part, layer 1" +200 97 231 183 1 1 1 "Cortical amygdalar area, anterior part, layer 2" +208 97 231 183 1 1 1 "Cortical amygdalar area, anterior part, layer 3" +647 97 231 183 1 1 1 "Cortical amygdalar area, posterior part" +655 97 231 183 1 1 1 "Cortical amygdalar area, posterior part, lateral zone" +584 97 231 183 1 1 1 "Cortical amygdalar area, posterior part, lateral zone, layers 1-2" +376 97 231 183 1 1 1 "Cortical amygdalar area, posterior part, lateral zone, layers 1-3" +216 97 231 183 1 1 1 "Cortical amygdalar area, posterior part, lateral zone, layer 1" +224 97 231 183 1 1 1 "Cortical amygdalar area, posterior part, lateral zone, layer 2" +232 97 231 183 1 1 1 "Cortical amygdalar area, posterior part, lateral zone, layer 3" +663 97 231 183 1 1 1 "Cortical amygdalar area, posterior part, medial zone" +592 97 231 183 1 1 1 "Cortical amygdalar area, posterior part, medial zone, layers 1-2" +383 97 231 183 1 1 1 "Cortical amygdalar area, posterior part, medial zone, layers 1-3" +240 97 231 183 1 1 1 "Cortical amygdalar area, posterior part, medial zone, layer 1" +248 97 231 183 1 1 1 "Cortical amygdalar area, posterior part, medial zone, layer 2" +256 97 231 183 1 1 1 "Cortical amygdalar area, posterior part, medial zone, layer 3" +788 89 218 171 1 1 1 "Piriform-amygdalar area" +400 89 218 171 1 1 1 "Piriform-amygdalar area, layers 1-3" +408 89 218 171 1 1 1 "Piriform-amygdalar area, molecular layer" +416 89 218 171 1 1 1 "Piriform-amygdalar area, pyramidal layer" +424 89 218 171 1 1 1 "Piriform-amygdalar area, polymorph layer" +566 168 236 211 1 1 1 "Postpiriform transition area" +517 168 236 211 1 1 1 "Postpiriform transition area, layers 1-3" +1140 168 236 211 1 1 1 "Postpiriform transition area, layers 1" +1141 168 236 211 1 1 1 "Postpiriform transition area, layers 2" +1142 168 236 211 1 1 1 "Postpiriform transition area, layers 3" +1089 126 208 75 1 1 1 "Hippocampal formation" +1080 126 208 75 1 1 1 "Hippocampal region" +375 126 208 75 1 1 1 "Ammon's horn" +382 126 208 75 1 1 1 "Field CA1" +391 126 208 75 1 1 1 "Field CA1, stratum lacunosum-moleculare" +399 126 208 75 1 1 1 "Field CA1, stratum oriens" +407 102 168 61 1 1 1 "Field CA1, pyramidal layer" +415 126 208 75 1 1 1 "Field CA1, stratum radiatum" +423 126 208 75 1 1 1 "Field CA2" +431 126 208 75 1 1 1 "Field CA2, stratum lacunosum-moleculare" +438 126 208 75 1 1 1 "Field CA2, stratum oriens" +446 102 168 61 1 1 1 "Field CA2, pyramidal layer" +454 126 208 75 1 1 1 "Field CA2, stratum radiatum" +463 126 208 75 1 1 1 "Field CA3" +471 126 208 75 1 1 1 "Field CA3, stratum lacunosum-moleculare" +479 126 208 75 1 1 1 "Field CA3, stratum lucidum" +486 126 208 75 1 1 1 "Field CA3, stratum oriens" +495 102 168 61 1 1 1 "Field CA3, pyramidal layer" +504 126 208 75 1 1 1 "Field CA3, stratum radiatum" +726 126 208 75 1 1 1 "Dentate gyrus" +10703 126 208 75 1 1 1 "Dentate gyrus, molecular layer" +10704 126 208 75 1 1 1 "Dentate gyrus, polymorph layer" +632 102 168 61 1 1 1 "Dentate gyrus, granule cell layer" +10702 126 208 75 1 1 1 "Dentate gyrus, subgranular zone" +734 126 208 75 1 1 1 "Dentate gyrus crest" +742 126 208 75 1 1 1 "Dentate gyrus crest, molecular layer" +751 126 208 75 1 1 1 "Dentate gyrus crest, polymorph layer" +758 126 208 75 1 1 1 "Dentate gyrus crest, granule cell layer" +766 126 208 75 1 1 1 "Dentate gyrus lateral blade" +775 126 208 75 1 1 1 "Dentate gyrus lateral blade, molecular layer" +782 126 208 75 1 1 1 "Dentate gyrus lateral blade, polymorph layer" +790 126 208 75 1 1 1 "Dentate gyrus lateral blade, granule cell layer" +799 126 208 75 1 1 1 "Dentate gyrus medial blade" +807 126 208 75 1 1 1 "Dentate gyrus medial blade, molecular layer" +815 126 208 75 1 1 1 "Dentate gyrus medial blade, polymorph layer" +823 126 208 75 1 1 1 "Dentate gyrus medial blade, granule cell layer" +982 126 208 75 1 1 1 "Fasciola cinerea" +19 126 208 75 1 1 1 "Induseum griseum" +822 50 184 37 1 1 1 "Retrohippocampal region" +909 50 184 37 1 1 1 "Entorhinal area" +918 50 184 37 1 1 1 "Entorhinal area, lateral part" +1121 50 184 37 1 1 1 "Entorhinal area, lateral part, layer 1" +20 50 184 37 1 1 1 "Entorhinal area, lateral part, layer 2" +999 50 184 37 1 1 1 "Entorhinal area, lateral part, layer 2/3" +715 50 184 37 1 1 1 "Entorhinal area, lateral part, layer 2a" +764 50 184 37 1 1 1 "Entorhinal area, lateral part, layer 2b" +52 50 184 37 1 1 1 "Entorhinal area, lateral part, layer 3" +92 50 184 37 1 1 1 "Entorhinal area, lateral part, layer 4" +312 50 184 37 1 1 1 "Entorhinal area, lateral part, layer 4/5" +139 50 184 37 1 1 1 "Entorhinal area, lateral part, layer 5" +387 50 184 37 1 1 1 "Entorhinal area, lateral part, layer 5/6" +28 50 184 37 1 1 1 "Entorhinal area, lateral part, layer 6a" +60 50 184 37 1 1 1 "Entorhinal area, lateral part, layer 6b" +926 50 184 37 1 1 1 "Entorhinal area, medial part, dorsal zone" +526 50 184 37 1 1 1 "Entorhinal area, medial part, dorsal zone, layer 1" +543 50 184 37 1 1 1 "Entorhinal area, medial part, dorsal zone, layer 2" +468 50 184 37 1 1 1 "Entorhinal area, medial part, dorsal zone, layer 2a" +508 50 184 37 1 1 1 "Entorhinal area, medial part, dorsal zone, layer 2b" +664 50 184 37 1 1 1 "Entorhinal area, medial part, dorsal zone, layer 3" +712 50 184 37 1 1 1 "Entorhinal area, medial part, dorsal zone, layer 4" +727 50 184 37 1 1 1 "Entorhinal area, medial part, dorsal zone, layer 5" +550 50 184 37 1 1 1 "Entorhinal area, medial part, dorsal zone, layer 5/6" +743 50 184 37 1 1 1 "Entorhinal area, medial part, dorsal zone, layer 6" +934 50 184 37 1 1 1 "Entorhinal area, medial part, ventral zone" +259 50 184 37 1 1 1 "Entorhinal area, medial part, ventral zone, layer 1" +324 50 184 37 1 1 1 "Entorhinal area, medial part, ventral zone, layer 2" +371 50 184 37 1 1 1 "Entorhinal area, medial part, ventral zone, layer 3" +419 50 184 37 1 1 1 "Entorhinal area, medial part, ventral zone, layer 4" +1133 50 184 37 1 1 1 "Entorhinal area, medial part, ventral zone, layer 5/6" +843 114 213 105 1 1 1 "Parasubiculum" +10693 114 213 105 1 1 1 "Parasubiculum, layer 1" +10694 114 213 105 1 1 1 "Parasubiculum, layer 2" +10695 114 213 105 1 1 1 "Parasubiculum, layer 3" +1037 72 200 60 1 1 1 "Postsubiculum" +10696 72 200 60 1 1 1 "Postsubiculum, layer 1" +10697 72 200 60 1 1 1 "Postsubiculum, layer 2" +10698 72 200 60 1 1 1 "Postsubiculum, layer 3" +1084 89 185 71 1 1 1 "Presubiculum" +10699 89 185 71 1 1 1 "Presubiculum, layer 1" +10700 89 185 71 1 1 1 "Presubiculum, layer 2" +10701 89 185 71 1 1 1 "Presubiculum, layer 3" +502 79 194 68 1 1 1 "Subiculum" +509 79 194 68 1 1 1 "Subiculum, dorsal part" +829 79 194 68 1 1 1 "Subiculum, dorsal part, molecular layer" +845 75 181 71 1 1 1 "Subiculum, dorsal part, pyramidal layer" +837 79 194 68 1 1 1 "Subiculum, dorsal part, stratum radiatum" +518 79 194 68 1 1 1 "Subiculum, ventral part" +853 79 194 68 1 1 1 "Subiculum, ventral part, molecular layer" +870 75 181 71 1 1 1 "Subiculum, ventral part, pyramidal layer" +861 79 194 68 1 1 1 "Subiculum, ventral part, stratum radiatum" +484682470 88 186 72 1 1 1 "Prosubiculum" +484682475 88 186 72 1 1 1 "Prosubiculum, dorsal part" +484682479 88 186 72 1 1 1 "Prosubiculum, dorsal part, molecular layer" +484682483 86 184 75 1 1 1 "Prosubiculum, dorsal part, pyramidal layer" +484682487 88 186 72 1 1 1 "Prosubiculum, dorsal part, stratum radiatum" +484682492 88 186 72 1 1 1 "Prosubiculum, ventral part" +484682496 88 186 72 1 1 1 "Prosubiculum, ventral part, molecular layer" +484682500 86 184 75 1 1 1 "Prosubiculum, ventral part, pyramidal layer" +484682504 88 186 72 1 1 1 "Prosubiculum, ventral part, stratum radiatum" +484682508 51 185 50 1 1 1 "Area prostriata" +703 138 218 135 1 1 1 "Cortical subplate" +16 138 218 135 1 1 1 "Layer 6b, isocortex" +583 138 218 135 1 1 1 "Claustrum" +942 160 238 157 1 1 1 "Endopiriform nucleus" +952 160 238 157 1 1 1 "Endopiriform nucleus, dorsal part" +966 160 238 157 1 1 1 "Endopiriform nucleus, ventral part" +131 144 235 141 1 1 1 "Lateral amygdalar nucleus" +295 157 231 156 1 1 1 "Basolateral amygdalar nucleus" +303 157 231 156 1 1 1 "Basolateral amygdalar nucleus, anterior part" +311 157 231 156 1 1 1 "Basolateral amygdalar nucleus, posterior part" +451 157 231 156 1 1 1 "Basolateral amygdalar nucleus, ventral part" +319 132 234 129 1 1 1 "Basomedial amygdalar nucleus" +327 132 234 129 1 1 1 "Basomedial amygdalar nucleus, anterior part" +334 132 234 129 1 1 1 "Basomedial amygdalar nucleus, posterior part" +780 151 236 147 1 1 1 "Posterior amygdalar nucleus" +623 152 214 249 1 1 1 "Cerebral nuclei" +477 152 214 249 1 1 1 "Striatum" +485 152 214 249 1 1 1 "Striatum dorsal region" +672 152 214 249 1 1 1 "Caudoputamen" +493 128 205 248 1 1 1 "Striatum ventral region" +56 128 205 248 1 1 1 "Nucleus accumbens" +998 128 205 248 1 1 1 "Fundus of striatum" +754 128 205 248 1 1 1 "Olfactory tubercle" +481 128 205 248 1 1 1 "Islands of Calleja" +489 128 205 248 1 1 1 "Major island of Calleja" +144 128 205 248 1 1 1 "Olfactory tubercle, layers 1-3" +458 128 205 248 1 1 1 "Olfactory tubercle, molecular layer" +465 128 205 248 1 1 1 "Olfactory tubercle, pyramidal layer" +473 128 205 248 1 1 1 "Olfactory tubercle, polymorph layer" +275 144 203 237 1 1 1 "Lateral septal complex" +242 144 203 237 1 1 1 "Lateral septal nucleus" +250 144 203 237 1 1 1 "Lateral septal nucleus, caudal (caudodorsal) part" +258 144 203 237 1 1 1 "Lateral septal nucleus, rostral (rostroventral) part" +266 144 203 237 1 1 1 "Lateral septal nucleus, ventral part" +310 144 203 237 1 1 1 "Septofimbrial nucleus" +333 144 203 237 1 1 1 "Septohippocampal nucleus" +278 128 192 226 1 1 1 "Striatum-like amygdalar nuclei" +23 128 192 226 1 1 1 "Anterior amygdalar area" +292 128 192 226 1 1 1 "Bed nucleus of the accessory olfactory tract" +536 128 192 226 1 1 1 "Central amygdalar nucleus" +544 128 192 226 1 1 1 "Central amygdalar nucleus, capsular part" +551 128 192 226 1 1 1 "Central amygdalar nucleus, lateral part" +559 128 192 226 1 1 1 "Central amygdalar nucleus, medial part" +1105 128 192 226 1 1 1 "Intercalated amygdalar nucleus" +403 128 192 226 1 1 1 "Medial amygdalar nucleus" +411 128 192 226 1 1 1 "Medial amygdalar nucleus, anterodorsal part" +418 128 192 226 1 1 1 "Medial amygdalar nucleus, anteroventral part" +426 128 192 226 1 1 1 "Medial amygdalar nucleus, posterodorsal part" +472 128 192 226 1 1 1 "Medial amygdalar nucleus, posterodorsal part, sublayer a" +480 128 192 226 1 1 1 "Medial amygdalar nucleus, posterodorsal part, sublayer b" +487 128 192 226 1 1 1 "Medial amygdalar nucleus, posterodorsal part, sublayer c" +435 128 192 226 1 1 1 "Medial amygdalar nucleus, posteroventral part" +803 133 153 204 1 1 1 "Pallidum" +818 133 153 204 1 1 1 "Pallidum, dorsal region" +1022 133 153 204 1 1 1 "Globus pallidus, external segment" +1031 133 153 204 1 1 1 "Globus pallidus, internal segment" +835 162 177 216 1 1 1 "Pallidum, ventral region" +342 162 177 216 1 1 1 "Substantia innominata" +298 162 177 216 1 1 1 "Magnocellular nucleus" +826 150 167 211 1 1 1 "Pallidum, medial region" +904 150 167 211 1 1 1 "Medial septal complex" +564 150 167 211 1 1 1 "Medial septal nucleus" +596 150 167 211 1 1 1 "Diagonal band nucleus" +581 150 167 211 1 1 1 "Triangular nucleus of septum" +809 179 192 223 1 1 1 "Pallidum, caudal region" +351 179 192 223 1 1 1 "Bed nuclei of the stria terminalis" +359 179 192 223 1 1 1 "Bed nuclei of the stria terminalis, anterior division" +537 179 192 223 1 1 1 "Bed nuclei of the stria terminalis, anterior division, anterolateral area" +498 179 192 223 1 1 1 "Bed nuclei of the stria terminalis, anterior division, anteromedial area" +505 179 192 223 1 1 1 "Bed nuclei of the stria terminalis, anterior division, dorsomedial nucleus" +513 179 192 223 1 1 1 "Bed nuclei of the stria terminalis, anterior division, fusiform nucleus" +546 179 192 223 1 1 1 "Bed nuclei of the stria terminalis, anterior division, juxtacapsular nucleus" +521 179 192 223 1 1 1 "Bed nuclei of the stria terminalis, anterior division, magnocellular nucleus" +554 179 192 223 1 1 1 "Bed nuclei of the stria terminalis, anterior division, oval nucleus" +562 179 192 223 1 1 1 "Bed nuclei of the stria terminalis, anterior division, rhomboid nucleus" +529 179 192 223 1 1 1 "Bed nuclei of the stria terminalis, anterior division, ventral nucleus" +367 179 192 223 1 1 1 "Bed nuclei of the stria terminalis, posterior division" +569 179 192 223 1 1 1 "Bed nuclei of the stria terminalis, posterior division, dorsal nucleus" +578 179 192 223 1 1 1 "Bed nuclei of the stria terminalis, posterior division, principal nucleus" +585 179 192 223 1 1 1 "Bed nuclei of the stria terminalis, posterior division, interfascicular nucleus" +594 179 192 223 1 1 1 "Bed nuclei of the stria terminalis, posterior division, transverse nucleus" +602 179 192 223 1 1 1 "Bed nuclei of the stria terminalis, posterior division, strial extension" +287 179 192 223 1 1 1 "Bed nucleus of the anterior commissure" +343 255 112 128 1 1 1 "Brain stem" +1129 255 112 128 1 1 1 "Interbrain" +549 255 112 128 1 1 1 "Thalamus" +864 255 128 132 1 1 1 "Thalamus, sensory-motor cortex related" +637 255 128 132 1 1 1 "Ventral group of the dorsal thalamus" +629 255 128 132 1 1 1 "Ventral anterior-lateral complex of the thalamus" +685 255 128 132 1 1 1 "Ventral medial nucleus of the thalamus" +709 255 128 132 1 1 1 "Ventral posterior complex of the thalamus" +718 255 128 132 1 1 1 "Ventral posterolateral nucleus of the thalamus" +725 255 128 132 1 1 1 "Ventral posterolateral nucleus of the thalamus, parvicellular part" +733 255 128 132 1 1 1 "Ventral posteromedial nucleus of the thalamus" +741 255 128 132 1 1 1 "Ventral posteromedial nucleus of the thalamus, parvicellular part" +406 255 128 132 1 1 1 "Subparafascicular nucleus" +414 255 128 132 1 1 1 "Subparafascicular nucleus, magnocellular part" +422 255 128 132 1 1 1 "Subparafascicular nucleus, parvicellular part" +609 255 128 132 1 1 1 "Subparafascicular area" +1044 255 128 132 1 1 1 "Peripeduncular nucleus" +1008 255 128 132 1 1 1 "Geniculate group, dorsal thalamus" +475 255 128 132 1 1 1 "Medial geniculate complex" +1072 255 128 132 1 1 1 "Medial geniculate complex, dorsal part" +1079 255 128 132 1 1 1 "Medial geniculate complex, ventral part" +1088 255 128 132 1 1 1 "Medial geniculate complex, medial part" +170 255 128 132 1 1 1 "Dorsal part of the lateral geniculate complex" +496345664 255 128 132 1 1 1 "Dorsal part of the lateral geniculate complex, shell" +496345668 255 128 132 1 1 1 "Dorsal part of the lateral geniculate complex, core" +496345672 255 128 132 1 1 1 "Dorsal part of the lateral geniculate complex, ipsilateral zone" +856 255 144 159 1 1 1 "Thalamus, polymodal association cortex related" +138 255 144 159 1 1 1 "Lateral group of the dorsal thalamus" +218 255 144 159 1 1 1 "Lateral posterior nucleus of the thalamus" +1020 255 144 159 1 1 1 "Posterior complex of the thalamus" +1029 255 144 159 1 1 1 "Posterior limiting nucleus of the thalamus" +325 255 144 159 1 1 1 "Suprageniculate nucleus" +239 255 144 159 1 1 1 "Anterior group of the dorsal thalamus" +255 255 144 159 1 1 1 "Anteroventral nucleus of thalamus" +127 255 144 159 1 1 1 "Anteromedial nucleus" +1096 255 144 159 1 1 1 "Anteromedial nucleus, dorsal part" +1104 255 144 159 1 1 1 "Anteromedial nucleus, ventral part" +64 255 144 159 1 1 1 "Anterodorsal nucleus" +1120 255 144 159 1 1 1 "Interanteromedial nucleus of the thalamus" +1113 255 144 159 1 1 1 "Interanterodorsal nucleus of the thalamus" +155 255 144 159 1 1 1 "Lateral dorsal nucleus of thalamus" +444 255 144 159 1 1 1 "Medial group of the dorsal thalamus" +59 255 144 159 1 1 1 "Intermediodorsal nucleus of the thalamus" +362 255 144 159 1 1 1 "Mediodorsal nucleus of thalamus" +617 255 144 159 1 1 1 "Mediodorsal nucleus of the thalamus, central part" +626 255 144 159 1 1 1 "Mediodorsal nucleus of the thalamus, lateral part" +636 255 144 159 1 1 1 "Mediodorsal nucleus of the thalamus, medial part" +366 255 144 159 1 1 1 "Submedial nucleus of the thalamus" +1077 255 144 159 1 1 1 "Perireunensis nucleus" +571 255 144 159 1 1 1 "Midline group of the dorsal thalamus" +149 255 144 159 1 1 1 "Paraventricular nucleus of the thalamus" +15 255 144 159 1 1 1 "Parataenial nucleus" +181 255 144 159 1 1 1 "Nucleus of reunions" +51 255 144 159 1 1 1 "Intralaminar nuclei of the dorsal thalamus" +189 255 144 159 1 1 1 "Rhomboid nucleus" +599 255 144 159 1 1 1 "Central medial nucleus of the thalamus" +907 255 144 159 1 1 1 "Paracentral nucleus" +575 255 144 159 1 1 1 "Central lateral nucleus of the thalamus" +930 255 144 159 1 1 1 "Parafascicular nucleus" +262 255 144 159 1 1 1 "Reticular nucleus of the thalamus" +1014 255 144 159 1 1 1 "Geniculate group, ventral thalamus" +27 255 144 159 1 1 1 "Intergeniculate leaflet of the lateral geniculate complex" +178 255 144 159 1 1 1 "Ventral part of the lateral geniculate complex" +300 255 144 159 1 1 1 "Ventral part of the lateral geniculate complex, lateral zone" +316 255 144 159 1 1 1 "Ventral part of the lateral geniculate complex, medial zone" +321 255 144 159 1 1 1 "Subgeniculate nucleus" +958 255 144 159 1 1 1 "Epithalamus" +483 255 144 159 1 1 1 "Medial habenula" +186 255 144 159 1 1 1 "Lateral habenula" +953 255 144 159 1 1 1 "Pineal body" +1097 230 68 56 1 1 1 "Hypothalamus" +157 255 93 80 1 1 1 "Periventricular zone" +390 255 93 80 1 1 1 "Supraoptic nucleus" +332 255 93 80 1 1 1 "Accessory supraoptic group" +432 255 93 80 1 1 1 "Nucleus circularis" +38 255 93 80 1 1 1 "Paraventricular hypothalamic nucleus" +71 255 93 80 1 1 1 "Paraventricular hypothalamic nucleus, magnocellular division" +47 255 93 80 1 1 1 "Paraventricular hypothalamic nucleus, magnocellular division, anterior magnocellular part" +79 255 93 80 1 1 1 "Paraventricular hypothalamic nucleus, magnocellular division, medial magnocellular part" +103 255 93 80 1 1 1 "Paraventricular hypothalamic nucleus, magnocellular division, posterior magnocellular part" +652 255 93 80 1 1 1 "Paraventricular hypothalamic nucleus, magnocellular division, posterior magnocellular part, lateral zone" +660 255 93 80 1 1 1 "Paraventricular hypothalamic nucleus, magnocellular division, posterior magnocellular part, medial zone" +94 255 93 80 1 1 1 "Paraventricular hypothalamic nucleus, parvicellular division" +55 255 93 80 1 1 1 "Paraventricular hypothalamic nucleus, parvicellular division, anterior parvicellular part" +87 255 93 80 1 1 1 "Paraventricular hypothalamic nucleus, parvicellular division, medial parvicellular part, dorsal zone" +110 255 93 80 1 1 1 "Paraventricular hypothalamic nucleus, parvicellular division, periventricular part" +30 255 93 80 1 1 1 "Periventricular hypothalamic nucleus, anterior part" +118 255 93 80 1 1 1 "Periventricular hypothalamic nucleus, intermediate part" +223 255 93 80 1 1 1 "Arcuate hypothalamic nucleus" +141 255 85 71 1 1 1 "Periventricular region" +72 255 85 71 1 1 1 "Anterodorsal preoptic nucleus" +80 255 85 71 1 1 1 "Anterior hypothalamic area" +263 255 85 71 1 1 1 "Anteroventral preoptic nucleus" +272 255 85 71 1 1 1 "Anteroventral periventricular nucleus" +830 255 85 71 1 1 1 "Dorsomedial nucleus of the hypothalamus" +668 255 85 71 1 1 1 "Dorsomedial nucleus of the hypothalamus, anterior part" +676 255 85 71 1 1 1 "Dorsomedial nucleus of the hypothalamus, posterior part" +684 255 85 71 1 1 1 "Dorsomedial nucleus of the hypothalamus, ventral part" +452 255 85 71 1 1 1 "Median preoptic nucleus" +523 255 85 71 1 1 1 "Medial preoptic area" +763 255 85 71 1 1 1 "Vascular organ of the lamina terminalis" +914 255 85 71 1 1 1 "Posterodorsal preoptic nucleus" +1109 255 85 71 1 1 1 "Parastrial nucleus" +1124 255 85 71 1 1 1 "Suprachiasmatic preoptic nucleus" +126 255 85 71 1 1 1 "Periventricular hypothalamic nucleus, posterior part" +133 255 85 71 1 1 1 "Periventricular hypothalamic nucleus, preoptic part" +347 255 85 71 1 1 1 "Subparaventricular zone" +286 255 85 71 1 1 1 "Suprachiasmatic nucleus" +338 255 85 71 1 1 1 "Subfornical organ" +689 255 85 71 1 1 1 "Ventrolateral preoptic nucleus" +467 255 76 62 1 1 1 "Hypothalamic medial zone" +88 255 76 62 1 1 1 "Anterior hypothalamic nucleus" +700 255 76 62 1 1 1 "Anterior hypothalamic nucleus, anterior part" +708 255 76 62 1 1 1 "Anterior hypothalamic nucleus, central part" +716 255 76 62 1 1 1 "Anterior hypothalamic nucleus, dorsal part" +724 255 76 62 1 1 1 "Anterior hypothalamic nucleus, posterior part" +331 255 76 62 1 1 1 "Mammillary body" +210 255 76 62 1 1 1 "Lateral mammillary nucleus" +491 255 76 62 1 1 1 "Medial mammillary nucleus" +732 255 76 62 1 1 1 "Medial mammillary nucleus, median part" +525 255 76 62 1 1 1 "Supramammillary nucleus" +1110 255 76 62 1 1 1 "Supramammillary nucleus, lateral part" +1118 255 76 62 1 1 1 "Supramammillary nucleus, medial part" +557 255 76 62 1 1 1 "Tuberomammillary nucleus" +1126 255 76 62 1 1 1 "Tuberomammillary nucleus, dorsal part" +1 255 76 62 1 1 1 "Tuberomammillary nucleus, ventral part" +515 255 76 62 1 1 1 "Medial preoptic nucleus" +740 255 76 62 1 1 1 "Medial preoptic nucleus, central part" +748 255 76 62 1 1 1 "Medial preoptic nucleus, lateral part" +756 255 76 62 1 1 1 "Medial preoptic nucleus, medial part" +980 255 76 62 1 1 1 "Dorsal premammillary nucleus" +1004 255 76 62 1 1 1 "Ventral premammillary nucleus" +63 255 76 62 1 1 1 "Paraventricular hypothalamic nucleus, descending division" +439 255 76 62 1 1 1 "Paraventricular hypothalamic nucleus, descending division, dorsal parvicellular part" +447 255 76 62 1 1 1 "Paraventricular hypothalamic nucleus, descending division, forniceal part" +455 255 76 62 1 1 1 "Paraventricular hypothalamic nucleus, descending division, lateral parvicellular part" +464 255 76 62 1 1 1 "Paraventricular hypothalamic nucleus, descending division, medial parvicellular part, ventral zone" +693 255 76 62 1 1 1 "Ventromedial hypothalamic nucleus" +761 255 76 62 1 1 1 "Ventromedial hypothalamic nucleus, anterior part" +769 255 76 62 1 1 1 "Ventromedial hypothalamic nucleus, central part" +777 255 76 62 1 1 1 "Ventromedial hypothalamic nucleus, dorsomedial part" +785 255 76 62 1 1 1 "Ventromedial hypothalamic nucleus, ventrolateral part" +946 255 76 62 1 1 1 "Posterior hypothalamic nucleus" +290 242 72 59 1 1 1 "Hypothalamic lateral zone" +194 242 72 59 1 1 1 "Lateral hypothalamic area" +226 242 72 59 1 1 1 "Lateral preoptic area" +356 242 72 59 1 1 1 "Preparasubthalamic nucleus" +364 242 72 59 1 1 1 "Parasubthalamic nucleus" +173 242 72 59 1 1 1 "Retrochiasmatic area" +470 242 72 59 1 1 1 "Subthalamic nucleus" +614 242 72 59 1 1 1 "Tuberal nucleus" +797 242 72 59 1 1 1 "Zona incerta" +796 242 72 59 1 1 1 "Dopaminergic A13 group" +804 242 72 59 1 1 1 "Fields of Forel" +10671 242 72 59 1 1 1 "Median eminence" +313 255 100 255 1 1 1 "Midbrain" +339 255 122 255 1 1 1 "Midbrain, sensory related" +302 255 122 255 1 1 1 "Superior colliculus, sensory related" +851 255 122 255 1 1 1 "Superior colliculus, optic layer" +842 255 122 255 1 1 1 "Superior colliculus, superficial gray layer" +834 255 122 255 1 1 1 "Superior colliculus, zonal layer" +4 255 122 255 1 1 1 "Inferior colliculus" +811 255 122 255 1 1 1 "Inferior colliculus, central nucleus" +820 255 122 255 1 1 1 "Inferior colliculus, dorsal nucleus" +828 255 122 255 1 1 1 "Inferior colliculus, external nucleus" +580 255 122 255 1 1 1 "Nucleus of the brachium of the inferior colliculus" +271 255 122 255 1 1 1 "Nucleus sagulum" +874 255 122 255 1 1 1 "Parabigeminal nucleus" +460 255 122 255 1 1 1 "Midbrain trigeminal nucleus" +323 255 144 255 1 1 1 "Midbrain, motor related" +381 255 144 255 1 1 1 "Substantia nigra, reticular part" +749 255 144 255 1 1 1 "Ventral tegmental area" +246 255 144 255 1 1 1 "Midbrain reticular nucleus, retrorubral area" +128 255 144 255 1 1 1 "Midbrain reticular nucleus" +539 255 144 255 1 1 1 "Midbrain reticular nucleus, magnocellular part" +548 255 144 255 1 1 1 "Midbrain reticular nucleus, magnocellular part, general" +555 255 144 255 1 1 1 "Midbrain reticular nucleus, parvicellular part" +294 255 144 255 1 1 1 "Superior colliculus, motor related" +26 255 144 255 1 1 1 "Superior colliculus, motor related, deep gray layer" +42 255 144 255 1 1 1 "Superior colliculus, motor related, deep white layer" +17 255 144 255 1 1 1 "Superior colliculus, motor related, intermediate white layer" +10 255 144 255 1 1 1 "Superior colliculus, motor related, intermediate gray layer" +494 255 144 255 1 1 1 "Superior colliculus, motor related, intermediate gray layer, sublayer a" +503 255 144 255 1 1 1 "Superior colliculus, motor related, intermediate gray layer, sublayer b" +511 255 144 255 1 1 1 "Superior colliculus, motor related, intermediate gray layer, sublayer c" +795 255 144 255 1 1 1 "Periaqueductal gray" +50 255 144 255 1 1 1 "Precommissural nucleus" +67 255 144 255 1 1 1 "Interstitial nucleus of Cajal" +587 255 144 255 1 1 1 "Nucleus of Darkschewitsch" +1100 255 144 255 1 1 1 "Pretectal region" +215 255 144 255 1 1 1 "Anterior pretectal nucleus" +531 255 144 255 1 1 1 "Medial pretectal area" +628 255 144 255 1 1 1 "Nucleus of the optic tract" +634 255 144 255 1 1 1 "Nucleus of the posterior commissure" +706 255 144 255 1 1 1 "Olivary pretectal nucleus" +1061 255 144 255 1 1 1 "Posterior pretectal nucleus" +616 255 144 255 1 1 1 "Cuneiform nucleus" +214 255 144 255 1 1 1 "Red nucleus" +35 255 144 255 1 1 1 "Oculomotor nucleus" +975 255 144 255 1 1 1 "Edinger-Westphal nucleus" +115 255 144 255 1 1 1 "Trochlear nucleus" +757 255 144 255 1 1 1 "Ventral tegmental nucleus" +231 255 144 255 1 1 1 "Anterior tegmental nucleus" +66 255 144 255 1 1 1 "Lateral terminal nucleus of the accessory optic tract" +75 255 144 255 1 1 1 "Dorsal terminal nucleus of the accessory optic tract" +58 255 144 255 1 1 1 "Medial terminal nucleus of the accessory optic tract" +615 255 144 255 1 1 1 "Substantia nigra, lateral part" +348 255 144 255 1 1 1 "Midbrain, behavioral state related" +374 255 166 255 1 1 1 "Substantia nigra, compact part" +1052 255 166 255 1 1 1 "Pedunculopontine nucleus" +165 255 166 255 1 1 1 "Midbrain raphe nuclei" +12 255 166 255 1 1 1 "Interfascicular nucleus raphe" +100 255 166 255 1 1 1 "Interpeduncular nucleus" +197 255 166 255 1 1 1 "Rostral linear nucleus raphe" +591 255 166 255 1 1 1 "Central linear nucleus raphe" +872 255 166 255 1 1 1 "Dorsal nucleus raphe" +1065 255 155 136 1 1 1 "Hindbrain" +771 255 155 136 1 1 1 "Pons" +1132 255 174 111 1 1 1 "Pons, sensory related" +612 255 174 111 1 1 1 "Nucleus of the lateral lemniscus" +82 255 174 111 1 1 1 "Nucleus of the lateral lemniscus, dorsal part" +90 255 174 111 1 1 1 "Nucleus of the lateral lemniscus, horizontal part" +99 255 174 111 1 1 1 "Nucleus of the lateral lemniscus, ventral part" +7 255 174 111 1 1 1 "Principal sensory nucleus of the trigeminal" +867 255 174 111 1 1 1 "Parabrachial nucleus" +123 255 174 111 1 1 1 "Koelliker-Fuse subnucleus" +881 255 174 111 1 1 1 "Parabrachial nucleus, lateral division" +860 255 174 111 1 1 1 "Parabrachial nucleus, lateral division, central lateral part" +868 255 174 111 1 1 1 "Parabrachial nucleus, lateral division, dorsal lateral part" +875 255 174 111 1 1 1 "Parabrachial nucleus, lateral division, external lateral part" +883 255 174 111 1 1 1 "Parabrachial nucleus, lateral division, superior lateral part" +891 255 174 111 1 1 1 "Parabrachial nucleus, lateral division, ventral lateral part" +890 255 174 111 1 1 1 "Parabrachial nucleus, medial division" +899 255 174 111 1 1 1 "Parabrachial nucleus, medial division, external medial part" +915 255 174 111 1 1 1 "Parabrachial nucleus, medial division, medial medial part" +923 255 174 111 1 1 1 "Parabrachial nucleus, medial division, ventral medial part" +398 255 174 111 1 1 1 "Superior olivary complex" +122 255 174 111 1 1 1 "Superior olivary complex, periolivary region" +105 255 174 111 1 1 1 "Superior olivary complex, medial part" +114 255 174 111 1 1 1 "Superior olivary complex, lateral part" +987 255 186 134 1 1 1 "Pons, motor related" +280 255 186 134 1 1 1 "Barrington's nucleus" +880 255 186 134 1 1 1 "Dorsal tegmental nucleus" +283 255 186 134 1 1 1 "Lateral tegmental nucleus" +898 255 186 134 1 1 1 "Pontine central gray" +931 255 186 134 1 1 1 "Pontine gray" +1093 255 186 134 1 1 1 "Pontine reticular nucleus, caudal part" +552 255 186 134 1 1 1 "Pontine reticular nucleus, ventral part" +318 255 186 134 1 1 1 "Supragenual nucleus" +462 255 186 134 1 1 1 "Superior salivatory nucleus" +534 255 186 134 1 1 1 "Supratrigeminal nucleus" +574 255 186 134 1 1 1 "Tegmental reticular nucleus" +621 255 186 134 1 1 1 "Motor nucleus of trigeminal" +1117 255 195 149 1 1 1 "Pons, behavioral state related" +679 255 195 149 1 1 1 "Superior central nucleus raphe" +137 255 195 149 1 1 1 "Superior central nucleus raphe, lateral part" +130 255 195 149 1 1 1 "Superior central nucleus raphe, medial part" +147 255 195 149 1 1 1 "Locus ceruleus" +162 255 195 149 1 1 1 "Laterodorsal tegmental nucleus" +604 255 195 149 1 1 1 "Nucleus incertus" +146 255 195 149 1 1 1 "Pontine reticular nucleus" +238 255 195 149 1 1 1 "Nucleus raphe pontis" +350 255 195 149 1 1 1 "Subceruleus nucleus" +358 255 195 149 1 1 1 "Sublaterodorsal nucleus" +354 255 155 205 1 1 1 "Medulla" +386 255 165 210 1 1 1 "Medulla, sensory related" +207 255 165 210 1 1 1 "Area postrema" +607 255 165 210 1 1 1 "Cochlear nuclei" +112 255 165 210 1 1 1 "Granular lamina of the cochlear nuclei" +560 255 165 210 1 1 1 "Cochlear nucleus, subpedunclular granular region" +96 255 165 210 1 1 1 "Dorsal cochlear nucleus" +101 255 165 210 1 1 1 "Ventral cochlear nucleus" +720 255 165 210 1 1 1 "Dorsal column nuclei" +711 255 165 210 1 1 1 "Cuneate nucleus" +1039 255 165 210 1 1 1 "Gracile nucleus" +903 255 165 210 1 1 1 "External cuneate nucleus" +642 255 165 210 1 1 1 "Nucleus of the trapezoid body" +651 255 165 210 1 1 1 "Nucleus of the solitary tract" +659 255 165 210 1 1 1 "Nucleus of the solitary tract, central part" +666 255 165 210 1 1 1 "Nucleus of the solitary tract, commissural part" +674 255 165 210 1 1 1 "Nucleus of the solitary tract, gelatinous part" +682 255 165 210 1 1 1 "Nucleus of the solitary tract, lateral part" +691 255 165 210 1 1 1 "Nucleus of the solitary tract, medial part" +429 255 165 210 1 1 1 "Spinal nucleus of the trigeminal, caudal part" +437 255 165 210 1 1 1 "Spinal nucleus of the trigeminal, interpolar part" +445 255 165 210 1 1 1 "Spinal nucleus of the trigeminal, oral part" +77 255 165 210 1 1 1 "Spinal nucleus of the trigeminal, oral part, caudal dorsomedial part" +53 255 165 210 1 1 1 "Spinal nucleus of the trigeminal, oral part, middle dorsomedial part, dorsal zone" +61 255 165 210 1 1 1 "Spinal nucleus of the trigeminal, oral part, middle dorsomedial part, ventral zone" +45 255 165 210 1 1 1 "Spinal nucleus of the trigeminal, oral part, rostral dorsomedial part" +69 255 165 210 1 1 1 "Spinal nucleus of the trigeminal, oral part, ventrolateral part" +789 255 165 210 1 1 1 "Nucleus z" +370 255 179 217 1 1 1 "Medulla, motor related" +653 255 179 217 1 1 1 "Abducens nucleus" +568 255 179 217 1 1 1 "Accessory abducens nucleus" +661 255 179 217 1 1 1 "Facial motor nucleus" +576 255 179 217 1 1 1 "Accessory facial motor nucleus" +640 255 179 217 1 1 1 "Efferent vestibular nucleus" +135 255 179 217 1 1 1 "Nucleus ambiguus" +939 255 179 217 1 1 1 "Nucleus ambiguus, dorsal division" +143 255 179 217 1 1 1 "Nucleus ambiguus, ventral division" +839 255 179 217 1 1 1 "Dorsal motor nucleus of the vagus nerve" +887 255 179 217 1 1 1 "Efferent cochlear group" +1048 255 179 217 1 1 1 "Gigantocellular reticular nucleus" +372 255 179 217 1 1 1 "Infracerebellar nucleus" +83 255 179 217 1 1 1 "Inferior olivary complex" +136 255 179 217 1 1 1 "Intermediate reticular nucleus" +106 255 179 217 1 1 1 "Inferior salivatory nucleus" +203 255 179 217 1 1 1 "Linear nucleus of the medulla" +235 255 179 217 1 1 1 "Lateral reticular nucleus" +955 255 179 217 1 1 1 "Lateral reticular nucleus, magnocellular part" +963 255 179 217 1 1 1 "Lateral reticular nucleus, parvicellular part" +307 255 179 217 1 1 1 "Magnocellular reticular nucleus" +395 255 179 217 1 1 1 "Medullary reticular nucleus" +1098 255 179 217 1 1 1 "Medullary reticular nucleus, dorsal part" +1107 255 179 217 1 1 1 "Medullary reticular nucleus, ventral part" +852 255 179 217 1 1 1 "Parvicellular reticular nucleus" +859 255 179 217 1 1 1 "Parasolitary nucleus" +938 255 179 217 1 1 1 "Paragigantocellular reticular nucleus" +970 255 179 217 1 1 1 "Paragigantocellular reticular nucleus, dorsal part" +978 255 179 217 1 1 1 "Paragigantocellular reticular nucleus, lateral part" +154 255 179 217 1 1 1 "Perihypoglossal nuclei" +161 255 179 217 1 1 1 "Nucleus intercalatus" +177 255 179 217 1 1 1 "Nucleus of Roller" +169 255 179 217 1 1 1 "Nucleus prepositus" +995 255 179 217 1 1 1 "Paramedian reticular nucleus" +1069 255 179 217 1 1 1 "Parapyramidal nucleus" +185 255 179 217 1 1 1 "Parapyramidal nucleus, deep part" +193 255 179 217 1 1 1 "Parapyramidal nucleus, superficial part" +701 255 179 217 1 1 1 "Vestibular nuclei" +209 255 179 217 1 1 1 "Lateral vestibular nucleus" +202 255 179 217 1 1 1 "Medial vestibular nucleus" +225 255 179 217 1 1 1 "Spinal vestibular nucleus" +217 255 179 217 1 1 1 "Superior vestibular nucleus" +765 255 179 217 1 1 1 "Nucleus x" +773 255 179 217 1 1 1 "Hypoglossal nucleus" +781 255 179 217 1 1 1 "Nucleus y" +76 255 179 217 1 1 1 "Interstitial nucleus of the vestibular nerve" +379 255 198 226 1 1 1 "Medulla, behavioral state related" +206 255 198 226 1 1 1 "Nucleus raphe magnus" +230 255 198 226 1 1 1 "Nucleus raphe pallidus" +222 255 198 226 1 1 1 "Nucleus raphe obscurus" +512 240 240 128 1 1 1 "Cerebellum" +528 240 240 128 1 1 1 "Cerebellar cortex" +645 255 252 145 1 1 1 "Vermal regions" +912 255 252 145 1 1 1 "Lingula (I)" +10707 255 252 145 1 1 1 "Lingula (I), molecular layer" +10706 255 252 145 1 1 1 "Lingula (I), Purkinje layer" +10705 236 231 84 1 1 1 "Lingula (I), granular layer" +920 255 252 145 1 1 1 "Central lobule" +976 255 252 145 1 1 1 "Lobule II" +10710 255 252 145 1 1 1 "Lobule II, molecular layer" +10709 255 252 145 1 1 1 "Lobule II, Purkinje layer" +10708 236 231 84 1 1 1 "Lobule II, granular layer" +984 255 252 145 1 1 1 "Lobule III" +10713 255 252 145 1 1 1 "Lobule III, molecular layer" +10712 255 252 145 1 1 1 "Lobule III, Purkinje layer" +10711 236 231 84 1 1 1 "Lobule III, granular layer" +928 255 252 145 1 1 1 "Culmen" +992 255 252 145 1 1 1 "Lobule IV" +10716 255 252 145 1 1 1 "Lobule IV, molecular layer" +10715 255 252 145 1 1 1 "Lobule IV, Purkinje layer" +10714 236 231 84 1 1 1 "Lobule IV, granular layer" +1001 255 252 145 1 1 1 "Lobule V" +10719 255 252 145 1 1 1 "Lobule V, molecular layer" +10718 255 252 145 1 1 1 "Lobule V, Purkinje layer" +10717 236 231 84 1 1 1 "Lobule V, granular layer" +1091 255 252 145 1 1 1 "Lobules IV-V" +10722 255 252 145 1 1 1 "Lobules IV-V, molecular layer" +10721 255 252 145 1 1 1 "Lobules IV-V, Purkinje layer" +10720 236 231 84 1 1 1 "Lobules IV-V, granular layer" +936 255 252 145 1 1 1 "Declive (VI)" +10725 255 252 145 1 1 1 "Declive (VI), molecular layer" +10724 255 252 145 1 1 1 "Declive (VI), Purkinje layer" +10723 236 231 84 1 1 1 "Declive (VI), granular layer" +944 255 252 145 1 1 1 "Folium-tuber vermis (VII)" +10728 255 252 145 1 1 1 "Folium-tuber vermis (VII), molecular layer" +10727 255 252 145 1 1 1 "Folium-tuber vermis (VII), Purkinje layer" +10726 236 231 84 1 1 1 "Folium-tuber vermis (VII), granular layer" +951 255 252 145 1 1 1 "Pyramus (VIII)" +10731 255 252 145 1 1 1 "Pyramus (VIII), molecular layer" +10730 255 252 145 1 1 1 "Pyramus (VIII), Purkinje layer" +10729 236 231 84 1 1 1 "Pyramus (VIII), granular layer" +957 255 252 145 1 1 1 "Uvula (IX)" +10734 255 252 145 1 1 1 "Uvula (IX), molecular layer" +10733 255 252 145 1 1 1 "Uvula (IX), Purkinje layer" +10732 236 231 84 1 1 1 "Uvula (IX), granular layer" +968 255 252 145 1 1 1 "Nodulus (X)" +10737 255 252 145 1 1 1 "Nodulus (X), molecular layer" +10736 255 252 145 1 1 1 "Nodulus (X), Purkinje layer" +10735 236 231 84 1 1 1 "Nodulus (X), granular layer" +1073 255 252 145 1 1 1 "Hemispheric regions" +1007 255 252 145 1 1 1 "Simple lobule" +10674 255 252 145 1 1 1 "Simple lobule, molecular layer" +10673 255 252 145 1 1 1 "Simple lobule, Purkinje layer" +10672 236 231 84 1 1 1 "Simple lobule, granular layer" +1017 255 252 145 1 1 1 "Ansiform lobule" +1056 255 252 145 1 1 1 "Crus 1" +10677 255 252 145 1 1 1 "Crus 1, molecular layer" +10676 255 252 145 1 1 1 "Crus 1, Purkinje layer" +10675 236 231 84 1 1 1 "Crus 1, granular layer" +1064 255 252 145 1 1 1 "Crus 2" +10680 255 252 145 1 1 1 "Crus 2, molecular layer" +10679 255 252 145 1 1 1 "Crus 2, Purkinje layer" +10678 236 231 84 1 1 1 "Crus 2, granular layer" +1025 255 252 145 1 1 1 "Paramedian lobule" +10683 255 252 145 1 1 1 "Paramedian lobule, molecular layer" +10682 255 252 145 1 1 1 "Paramedian lobule, Purkinje layer" +10681 236 231 84 1 1 1 "Paramedian lobule, granular layer" +1033 255 252 145 1 1 1 "Copula pyramidis" +10686 255 252 145 1 1 1 "Copula pyramidis, molecular layer" +10685 255 252 145 1 1 1 "Copula pyramidis, Purkinje layer" +10684 236 231 84 1 1 1 "Copula pyramidis, granular layer" +1041 255 252 145 1 1 1 "Paraflocculus" +10689 255 252 145 1 1 1 "Paraflocculus, molecular layer" +10688 255 252 145 1 1 1 "Paraflocculus, Purkinje layer" +10687 236 231 84 1 1 1 "Paraflocculus, granular layer" +1049 255 252 145 1 1 1 "Flocculus" +10692 255 252 145 1 1 1 "Flocculus, molecular layer" +10691 255 252 145 1 1 1 "Flocculus, Purkinje layer" +10690 236 231 84 1 1 1 "Flocculus, granular layer" +1144 255 252 145 1 1 1 "Cerebellar cortex, molecular layer" +1145 255 252 145 1 1 1 "Cerebellar cortex, Purkinje layer" +1143 236 231 84 1 1 1 "Cerebellar cortex, granular layer" +519 240 240 128 1 1 1 "Cerebellar nuclei" +989 255 253 188 1 1 1 "Fastigial nucleus" +91 255 253 188 1 1 1 "Interposed nucleus" +846 255 253 188 1 1 1 "Dentate nucleus" +1009 204 204 204 1 1 1 "fiber tracts" +967 204 204 204 1 1 1 "cranial nerves" +885 204 204 204 1 1 1 "terminal nerve" +949 204 204 204 1 1 1 "vomeronasal nerve" +840 204 204 204 1 1 1 "olfactory nerve" +1016 204 204 204 1 1 1 "olfactory nerve layer of main olfactory bulb" +21 204 204 204 1 1 1 "lateral olfactory tract, general" +665 204 204 204 1 1 1 "lateral olfactory tract, body" +538 204 204 204 1 1 1 "dorsal limb" +459 204 204 204 1 1 1 "accessory olfactory tract" +900 204 204 204 1 1 1 "anterior commissure, olfactory limb" +848 204 204 204 1 1 1 "optic nerve" +876 204 204 204 1 1 1 "accessory optic tract" +916 204 204 204 1 1 1 "brachium of the superior colliculus" +336 204 204 204 1 1 1 "superior colliculus commissure" +117 204 204 204 1 1 1 "optic chiasm" +125 204 204 204 1 1 1 "optic tract" +357 204 204 204 1 1 1 "tectothalamic pathway" +832 204 204 204 1 1 1 "oculomotor nerve" +62 204 204 204 1 1 1 "medial longitudinal fascicle" +158 204 204 204 1 1 1 "posterior commissure" +911 204 204 204 1 1 1 "trochlear nerve" +384 204 204 204 1 1 1 "trochlear nerve decussation" +710 204 204 204 1 1 1 "abducens nerve" +901 204 204 204 1 1 1 "trigeminal nerve" +93 204 204 204 1 1 1 "motor root of the trigeminal nerve" +229 204 204 204 1 1 1 "sensory root of the trigeminal nerve" +705 204 204 204 1 1 1 "midbrain tract of the trigeminal nerve" +794 204 204 204 1 1 1 "spinal tract of the trigeminal nerve" +798 204 204 204 1 1 1 "facial nerve" +1131 204 204 204 1 1 1 "intermediate nerve" +1116 204 204 204 1 1 1 "genu of the facial nerve" +933 204 204 204 1 1 1 "vestibulocochlear nerve" +1076 204 204 204 1 1 1 "efferent cochleovestibular bundle" +413 204 204 204 1 1 1 "vestibular nerve" +948 204 204 204 1 1 1 "cochlear nerve" +841 204 204 204 1 1 1 "trapezoid body" +641 204 204 204 1 1 1 "intermediate acoustic stria" +506 204 204 204 1 1 1 "dorsal acoustic stria" +658 204 204 204 1 1 1 "lateral lemniscus" +633 204 204 204 1 1 1 "inferior colliculus commissure" +482 204 204 204 1 1 1 "brachium of the inferior colliculus" +808 204 204 204 1 1 1 "glossopharyngeal nerve" +917 204 204 204 1 1 1 "vagus nerve" +237 204 204 204 1 1 1 "solitary tract" +717 204 204 204 1 1 1 "accessory spinal nerve" +813 204 204 204 1 1 1 "hypoglossal nerve" +925 204 204 204 1 1 1 "ventral roots" +792 204 204 204 1 1 1 "dorsal roots" +932 204 204 204 1 1 1 "cervicothalamic tract" +570 204 204 204 1 1 1 "dorsolateral fascicle" +522 204 204 204 1 1 1 "dorsal commissure of the spinal cord" +858 204 204 204 1 1 1 "ventral commissure of the spinal cord" +586 204 204 204 1 1 1 "fasciculus proprius" +514 204 204 204 1 1 1 "dorsal column" +380 204 204 204 1 1 1 "cuneate fascicle" +388 204 204 204 1 1 1 "gracile fascicle" +396 204 204 204 1 1 1 "internal arcuate fibers" +697 204 204 204 1 1 1 "medial lemniscus" +871 204 204 204 1 1 1 "spinothalamic tract" +29 204 204 204 1 1 1 "lateral spinothalamic tract" +389 204 204 204 1 1 1 "ventral spinothalamic tract" +245 204 204 204 1 1 1 "spinocervical tract" +261 204 204 204 1 1 1 "spino-olivary pathway" +270 204 204 204 1 1 1 "spinoreticular pathway" +293 204 204 204 1 1 1 "spinovestibular pathway" +277 204 204 204 1 1 1 "spinotectal pathway" +253 204 204 204 1 1 1 "spinohypothalamic pathway" +285 204 204 204 1 1 1 "spinotelenchephalic pathway" +627 204 204 204 1 1 1 "hypothalamohypophysial tract" +960 204 204 204 1 1 1 "cerebellum related fiber tracts" +744 204 204 204 1 1 1 "cerebellar commissure" +752 204 204 204 1 1 1 "cerebellar peduncles" +326 204 204 204 1 1 1 "superior cerebelar peduncles" +812 204 204 204 1 1 1 "superior cerebellar peduncle decussation" +85 204 204 204 1 1 1 "spinocerebellar tract" +850 204 204 204 1 1 1 "uncinate fascicle" +866 204 204 204 1 1 1 "ventral spinocerebellar tract" +78 204 204 204 1 1 1 "middle cerebellar peduncle" +1123 204 204 204 1 1 1 "inferior cerebellar peduncle" +553 204 204 204 1 1 1 "dorsal spinocerebellar tract" +499 204 204 204 1 1 1 "cuneocerebellar tract" +650 204 204 204 1 1 1 "juxtarestiform body" +490 204 204 204 1 1 1 "bulbocerebellar tract" +404 204 204 204 1 1 1 "olivocerebellar tract" +410 204 204 204 1 1 1 "reticulocerebellar tract" +373 204 204 204 1 1 1 "trigeminocerebellar tract" +728 204 204 204 1 1 1 "arbor vitae" +484682512 204 204 204 1 1 1 "supra-callosal cerebral white matter" +983 204 204 204 1 1 1 "lateral forebrain bundle system" +776 204 204 204 1 1 1 "corpus callosum" +956 204 204 204 1 1 1 "corpus callosum, anterior forceps" +579 204 204 204 1 1 1 "external capsule" +964 204 204 204 1 1 1 "corpus callosum, extreme capsule" +1108 204 204 204 1 1 1 "genu of corpus callosum" +971 204 204 204 1 1 1 "corpus callosum, posterior forceps" +979 204 204 204 1 1 1 "corpus callosum, rostrum" +484682516 204 204 204 1 1 1 "corpus callosum, body" +986 204 204 204 1 1 1 "corpus callosum, splenium" +784 204 204 204 1 1 1 "corticospinal tract" +6 204 204 204 1 1 1 "internal capsule" +924 204 204 204 1 1 1 "cerebal peduncle" +1036 204 204 204 1 1 1 "corticotectal tract" +1012 204 204 204 1 1 1 "corticorubral tract" +1003 204 204 204 1 1 1 "corticopontine tract" +994 204 204 204 1 1 1 "corticobulbar tract" +190 204 204 204 1 1 1 "pyramid" +198 204 204 204 1 1 1 "pyramidal decussation" +1019 204 204 204 1 1 1 "corticospinal 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"premammillary commissure" +341 204 204 204 1 1 1 "supramammillary decussation" +182 204 204 204 1 1 1 "propriohypothalamic pathways" +762 204 204 204 1 1 1 "propriohypothalamic pathways, dorsal" +770 204 204 204 1 1 1 "propriohypothalamic pathways, lateral" +779 204 204 204 1 1 1 "propriohypothalamic pathways, medial" +787 204 204 204 1 1 1 "propriohypothalamic pathways, ventral" +150 204 204 204 1 1 1 "periventricular bundle of the hypothalamus" +46 204 204 204 1 1 1 "mammillary related" +753 204 204 204 1 1 1 "principal mammillary tract" +690 204 204 204 1 1 1 "mammilothalmic tract" +681 204 204 204 1 1 1 "mammillotegmental tract" +673 204 204 204 1 1 1 "mammillary peduncle" +1068 204 204 204 1 1 1 "dorsal thalamus related" +722 204 204 204 1 1 1 "periventricular bundle of the thalamus" +1083 204 204 204 1 1 1 "epithalamus related" +802 204 204 204 1 1 1 "stria medullaris" +595 204 204 204 1 1 1 "fasciculus retroflexus" +611 204 204 204 1 1 1 "habenular commissure" +730 204 204 204 1 1 1 "pineal stalk" +70 204 204 204 1 1 1 "midbrain related" +547 204 204 204 1 1 1 "dorsal longitudinal fascicle" +563 204 204 204 1 1 1 "dorsal tegmental tract" +73 170 170 170 1 1 1 "ventricular systems" +81 170 170 170 1 1 1 "lateral ventricle" +89 170 170 170 1 1 1 "rhinocele" +98 170 170 170 1 1 1 "subependymal zone" +108 170 170 170 1 1 1 "choroid plexus" +116 170 170 170 1 1 1 "choroid fissure" +124 170 170 170 1 1 1 "interventricular foramen" +129 170 170 170 1 1 1 "third ventricle" +140 170 170 170 1 1 1 "cerebral aqueduct" +145 170 170 170 1 1 1 "fourth ventricle" +153 170 170 170 1 1 1 "lateral recess" +164 170 170 170 1 1 1 "central canal, spinal cord/medulla" +1024 170 170 170 1 1 1 "grooves" +1032 170 170 170 1 1 1 "grooves of the cerebral cortex" +1055 170 170 170 1 1 1 "endorhinal groove" +1063 170 170 170 1 1 1 "hippocampal fissure" +1071 170 170 170 1 1 1 "rhinal fissure" +1078 170 170 170 1 1 1 "rhinal incisure" +1040 170 170 170 1 1 1 "grooves of the cerebellar cortex" +1087 170 170 170 1 1 1 "precentral fissure" +1095 170 170 170 1 1 1 "preculminate fissure" +1103 170 170 170 1 1 1 "primary fissure" +1112 170 170 170 1 1 1 "posterior superior fissure" +1119 170 170 170 1 1 1 "prepyramidal fissure" +3 170 170 170 1 1 1 "secondary fissure" +11 170 170 170 1 1 1 "posterolateral fissure" +18 170 170 170 1 1 1 "nodular fissure" +25 170 170 170 1 1 1 "simple fissure" +34 170 170 170 1 1 1 "intercrural fissure" +43 170 170 170 1 1 1 "ansoparamedian fissure" +49 170 170 170 1 1 1 "intraparafloccular fissure" +57 170 170 170 1 1 1 "paramedian sulcus" +65 170 170 170 1 1 1 "parafloccular sulcus" +624 170 170 170 1 1 1 "Interpeduncular fossa" +304325711 127 46 126 1 1 1 "retina" diff --git a/annotation_volumes/AllenMouseBrain_Atlas_CCF_2017.label b/annotation_volumes/AllenMouseBrain_Atlas_CCF_2017.label new file mode 100644 index 0000000000000000000000000000000000000000..31c781b65efa839a9cf955b3475921f5937e01af --- /dev/null +++ b/annotation_volumes/AllenMouseBrain_Atlas_CCF_2017.label @@ -0,0 +1,1342 @@ +################################################ +# ITK-SnAP Label Description File +# File format: +# IDX -R- -G- -B- -A-- VIS MSH LABEL +# Fields: +# IDX: Zero-based index +# -R-: Red color component (0..255) +# -G-: Green color component (0..255) +# -B-: Blue color component (0..255) +# -A-: Label transparency (0.00 .. 1.00) +# VIS: Label visibility (0 or 1) +# IDX: Label mesh visibility (0 or 1) +# LABEL: Label description +################################################ + 0 0 0 0 0 0 0 "Clear Label" +997 255 255 255 1 1 1 "root" +8 191 218 227 1 1 1 "Basic cell groups and regions" +567 176 240 255 1 1 1 "Cerebrum" +688 176 255 184 1 1 1 "Cerebral cortex" +695 112 255 112 1 1 1 "Cortical plate" +315 112 255 113 1 1 1 "Isocortex" +184 38 143 69 1 1 1 "Frontal pole, cerebral cortex" +68 38 143 69 1 1 1 "Frontal pole, layer 1" +667 38 143 69 1 1 1 "Frontal pole, layer 2/3" +526157192 38 143 69 1 1 1 "Frontal pole, layer 5" +526157196 38 143 69 1 1 1 "Frontal pole, layer 6a" +526322264 38 143 69 1 1 1 "Frontal pole, layer 6b" +500 31 157 90 1 1 1 "Somatomotor areas" +107 31 157 90 1 1 1 "Somatomotor areas, Layer 1" +219 31 157 90 1 1 1 "Somatomotor areas, Layer 2/3" +299 31 157 90 1 1 1 "Somatomotor areas, Layer 5" +644 31 157 90 1 1 1 "Somatomotor areas, Layer 6a" +947 31 157 90 1 1 1 "Somatomotor areas, Layer 6b" +985 31 157 90 1 1 1 "Primary motor area" +320 31 157 90 1 1 1 "Primary motor area, Layer 1" +943 31 157 90 1 1 1 "Primary motor area, Layer 2/3" +648 31 157 90 1 1 1 "Primary motor area, Layer 5" +844 31 157 90 1 1 1 "Primary motor area, Layer 6a" +882 31 157 90 1 1 1 "Primary motor area, Layer 6b" +993 31 157 90 1 1 1 "Secondary motor area" +656 31 157 90 1 1 1 "Secondary motor area, layer 1" +962 31 157 90 1 1 1 "Secondary motor area, layer 2/3" +767 31 157 90 1 1 1 "Secondary motor area, layer 5" +1021 31 157 90 1 1 1 "Secondary motor area, layer 6a" +1085 31 157 90 1 1 1 "Secondary motor area, layer 6b" +453 24 128 100 1 1 1 "Somatosensory areas" +12993 24 128 100 1 1 1 "Somatosensory areas, layer 1" +12994 24 128 100 1 1 1 "Somatosensory areas, layer 2/3" +12995 24 128 100 1 1 1 "Somatosensory areas, layer 4" +12996 24 128 100 1 1 1 "Somatosensory areas, layer 5" +12997 24 128 100 1 1 1 "Somatosensory areas, layer 6a" +12998 24 128 100 1 1 1 "Somatosensory areas, layer 6b" +322 24 128 100 1 1 1 "Primary somatosensory area" +793 24 128 100 1 1 1 "Primary somatosensory area, layer 1" +346 24 128 100 1 1 1 "Primary somatosensory area, layer 2/3" +865 24 128 100 1 1 1 "Primary somatosensory area, layer 4" +921 24 128 100 1 1 1 "Primary somatosensory area, layer 5" +686 24 128 100 1 1 1 "Primary somatosensory area, layer 6a" +719 24 128 100 1 1 1 "Primary somatosensory area, layer 6b" +353 24 128 100 1 1 1 "Primary somatosensory area, nose" +558 24 128 100 1 1 1 "Primary somatosensory area, nose, layer 1" +838 24 128 100 1 1 1 "Primary somatosensory area, nose, layer 2/3" +654 24 128 100 1 1 1 "Primary somatosensory area, nose, layer 4" +702 24 128 100 1 1 1 "Primary somatosensory area, nose, layer 5" +889 24 128 100 1 1 1 "Primary somatosensory area, nose, layer 6a" +929 24 128 100 1 1 1 "Primary somatosensory area, nose, layer 6b" +329 24 128 100 1 1 1 "Primary somatosensory area, barrel field" +981 24 128 100 1 1 1 "Primary somatosensory area, barrel field, layer 1" +201 24 128 100 1 1 1 "Primary somatosensory area, barrel field, layer 2/3" +1047 24 128 100 1 1 1 "Primary somatosensory area, barrel field, layer 4" +1070 24 128 100 1 1 1 "Primary somatosensory area, barrel field, layer 5" +1038 24 128 100 1 1 1 "Primary somatosensory area, barrel field, layer 6a" +1062 24 128 100 1 1 1 "Primary somatosensory area, barrel field, layer 6b" +480149202 24 128 100 1 1 1 "Rostrolateral lateral visual area" +480149206 24 128 100 1 1 1 "Rostrolateral lateral visual area, layer 1" +480149210 24 128 100 1 1 1 "Rostrolateral lateral visual 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2/3" +950 24 128 100 1 1 1 "Primary somatosensory area, mouth, layer 4" +974 24 128 100 1 1 1 "Primary somatosensory area, mouth, layer 5" +1102 24 128 100 1 1 1 "Primary somatosensory area, mouth, layer 6a" +2 24 128 100 1 1 1 "Primary somatosensory area, mouth, layer 6b" +369 24 128 100 1 1 1 "Primary somatosensory area, upper limb" +450 24 128 100 1 1 1 "Primary somatosensory area, upper limb, layer 1" +854 24 128 100 1 1 1 "Primary somatosensory area, upper limb, layer 2/3" +577 24 128 100 1 1 1 "Primary somatosensory area, upper limb, layer 4" +625 24 128 100 1 1 1 "Primary somatosensory area, upper limb, layer 5" +945 24 128 100 1 1 1 "Primary somatosensory area, upper limb, layer 6a" +1026 24 128 100 1 1 1 "Primary somatosensory area, upper limb, layer 6b" +361 24 128 100 1 1 1 "Primary somatosensory area, trunk" +1006 24 128 100 1 1 1 "Primary somatosensory area, trunk, layer 1" +670 24 128 100 1 1 1 "Primary somatosensory area, trunk, layer 2/3" +1086 24 128 100 1 1 1 "Primary somatosensory area, trunk, layer 4" +1111 24 128 100 1 1 1 "Primary somatosensory area, trunk, layer 5" +9 24 128 100 1 1 1 "Primary somatosensory area, trunk, layer 6a" +461 24 128 100 1 1 1 "Primary somatosensory area, trunk, layer 6b" +182305689 24 128 100 1 1 1 "Primary somatosensory area, unassigned" +182305693 24 128 100 1 1 1 "Primary somatosensory area, unassigned, layer 1" +182305697 24 128 100 1 1 1 "Primary somatosensory area, unassigned, layer 2/3" +182305701 24 128 100 1 1 1 "Primary somatosensory area, unassigned, layer 4" +182305705 24 128 100 1 1 1 "Primary somatosensory area, unassigned, layer 5" +182305709 24 128 100 1 1 1 "Primary somatosensory area, unassigned, layer 6a" +182305713 24 128 100 1 1 1 "Primary somatosensory area, unassigned, layer 6b" +378 24 128 100 1 1 1 "Supplemental somatosensory area" +873 24 128 100 1 1 1 "Supplemental somatosensory area, layer 1" +806 24 128 100 1 1 1 "Supplemental somatosensory area, layer 2/3" +1035 24 128 100 1 1 1 "Supplemental somatosensory area, layer 4" +1090 24 128 100 1 1 1 "Supplemental somatosensory area, layer 5" +862 24 128 100 1 1 1 "Supplemental somatosensory area, layer 6a" +893 24 128 100 1 1 1 "Supplemental somatosensory area, layer 6b" +1057 0 156 117 1 1 1 "Gustatory areas" +36 0 156 117 1 1 1 "Gustatory areas, layer 1" +180 0 156 117 1 1 1 "Gustatory areas, layer 2/3" +148 0 156 117 1 1 1 "Gustatory areas, layer 4" +187 0 156 117 1 1 1 "Gustatory areas, layer 5" +638 0 156 117 1 1 1 "Gustatory areas, layer 6a" +662 0 156 117 1 1 1 "Gustatory areas, layer 6b" +677 17 173 131 1 1 1 "Visceral area" +897 17 173 131 1 1 1 "Visceral area, layer 1" +1106 17 173 131 1 1 1 "Visceral area, layer 2/3" +1010 17 173 131 1 1 1 "Visceral area, layer 4" +1058 17 173 131 1 1 1 "Visceral area, layer 5" +857 17 173 131 1 1 1 "Visceral area, layer 6a" +849 17 173 131 1 1 1 "Visceral area, layer 6b" +247 1 147 153 1 1 1 "Auditory areas" +1011 1 147 153 1 1 1 "Dorsal auditory area" +527 1 147 153 1 1 1 "Dorsal auditory area, layer 1" +600 1 147 153 1 1 1 "Dorsal auditory area, layer 2/3" +678 1 147 153 1 1 1 "Dorsal auditory area, layer 4" +252 1 147 153 1 1 1 "Dorsal auditory area, layer 5" +156 1 147 153 1 1 1 "Dorsal auditory area, layer 6a" +243 1 147 153 1 1 1 "Dorsal auditory area, layer 6b" +480149230 1 147 153 1 1 1 "Laterolateral anterior visual area" +480149234 1 147 153 1 1 1 "Laterolateral anterior visual area, layer 1" +480149238 1 147 153 1 1 1 "Laterolateral anterior visual area, layer 2/3" +480149242 1 147 153 1 1 1 "Laterolateral anterior visual area, layer 4" +480149246 1 147 153 1 1 1 "Laterolateral anterior visual area,layer 5" +480149250 1 147 153 1 1 1 "Laterolateral anterior visual area, layer 6a" +480149254 1 147 153 1 1 1 "Laterolateral anterior visual area, layer 6b" +1002 1 147 153 1 1 1 "Primary auditory area" +735 1 147 153 1 1 1 "Primary auditory area, layer 1" +251 1 147 153 1 1 1 "Primary auditory area, layer 2/3" +816 1 147 153 1 1 1 "Primary 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"Retrosplenial area" +894 26 166 152 1 1 1 "Retrosplenial area, lateral agranular part" +671 26 166 152 1 1 1 "Retrosplenial area, lateral agranular part, layer 1" +965 26 166 152 1 1 1 "Retrosplenial area, lateral agranular part, layer 2/3" +774 26 166 152 1 1 1 "Retrosplenial area, lateral agranular part, layer 5" +906 26 166 152 1 1 1 "Retrosplenial area, lateral agranular part, layer 6a" +279 26 166 152 1 1 1 "Retrosplenial area, lateral agranular part, layer 6b" +480149258 26 166 152 1 1 1 "Mediomedial anterior visual area" +480149262 26 166 152 1 1 1 "Mediomedial anterior visual area, layer 1" +480149266 26 166 152 1 1 1 "Mediomedial anterior visual area, layer 2/3" +480149270 26 166 152 1 1 1 "Mediomedial anterior visual area, layer 4" +480149274 26 166 152 1 1 1 "Mediomedial anterior visual area,layer 5" +480149278 26 166 152 1 1 1 "Mediomedial anterior visual area, layer 6a" +480149282 26 166 152 1 1 1 "Mediomedial anterior visual area, layer 6b" +480149286 26 166 152 1 1 1 "Mediomedial posterior visual area" +480149290 26 166 152 1 1 1 "Mediomedial posterior visual area, layer 1" +480149294 26 166 152 1 1 1 "Mediomedial posterior visual area, layer 2/3" +480149298 26 166 152 1 1 1 "Mediomedial posterior visual area, layer 4" +480149302 26 166 152 1 1 1 "Mediomedial posterior visual area,layer 5" +480149306 26 166 152 1 1 1 "Mediomedial posterior visual area, layer 6a" +480149310 26 166 152 1 1 1 "Mediomedial posterior visual area, layer 6b" +480149314 26 166 152 1 1 1 "Medial visual area" +480149318 26 166 152 1 1 1 "Medial visual area, layer 1" +480149322 26 166 152 1 1 1 "Medial visual area, layer 2/3" +480149326 26 166 152 1 1 1 "Medial visual area, layer 4" +480149330 26 166 152 1 1 1 "Medial visual area,layer 5" +480149334 26 166 152 1 1 1 "Medial visual area, layer 6a" +480149338 26 166 152 1 1 1 "Medial visual area, layer 6b" +879 26 166 152 1 1 1 "Retrosplenial area, dorsal part" +442 26 166 152 1 1 1 "Retrosplenial area, dorsal part, layer 1" 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1 1 1 "Posterior parietal association areas, layer 4" +683 0 159 172 1 1 1 "Posterior parietal association areas, layer 5" +308 0 159 172 1 1 1 "Posterior parietal association areas, layer 6a" +340 0 159 172 1 1 1 "Posterior parietal association areas, layer 6b" +312782546 0 159 172 1 1 1 "Anterior area" +312782550 0 159 172 1 1 1 "Anterior area, layer 1" +312782554 0 159 172 1 1 1 "Anterior area, layer 2/3" +312782558 0 159 172 1 1 1 "Anterior area, layer 4" +312782562 0 159 172 1 1 1 "Anterior area, layer 5" +312782566 0 159 172 1 1 1 "Anterior area, layer 6a" +312782570 0 159 172 1 1 1 "Anterior area, layer 6b" +417 0 159 172 1 1 1 "Rostrolateral visual area" +312782604 0 159 172 1 1 1 "Rostrolateral area, layer 1" +312782608 0 159 172 1 1 1 "Rostrolateral area, layer 2/3" +312782612 0 159 172 1 1 1 "Rostrolateral area, layer 4" +312782616 0 159 172 1 1 1 "Rostrolateral area, layer 5" +312782620 0 159 172 1 1 1 "Rostrolateral area, layer 6a" +312782624 0 159 172 1 1 1 "Rostrolateral area, layer 6b" +541 21 176 179 1 1 1 "Temporal association areas" +97 21 176 179 1 1 1 "Temporal association areas, layer 1" +1127 21 176 179 1 1 1 "Temporal association areas, layer 2/3" +234 21 176 179 1 1 1 "Temporal association areas, layer 4" +289 21 176 179 1 1 1 "Temporal association areas, layer 5" +729 21 176 179 1 1 1 "Temporal association areas, layer 6a" +786 21 176 179 1 1 1 "Temporal association areas, layer 6b" +922 14 150 132 1 1 1 "Perirhinal area" +540 14 150 132 1 1 1 "Perirhinal area, layer 1" +888 14 150 132 1 1 1 "Perirhinal area, layer 2/3" +692 14 150 132 1 1 1 "Perirhinal area, layer 5" +335 14 150 132 1 1 1 "Perirhinal area, layer 6a" +368 14 150 132 1 1 1 "Perirhinal area, layer 6b" +895 13 159 145 1 1 1 "Ectorhinal area" +836 13 159 145 1 1 1 "Ectorhinal area/Layer 1" +427 13 159 145 1 1 1 "Ectorhinal area/Layer 2/3" +988 13 159 145 1 1 1 "Ectorhinal area/Layer 5" +977 13 159 145 1 1 1 "Ectorhinal area/Layer 6a" +1045 13 159 145 1 1 1 "Ectorhinal area/Layer 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75 1 1 1 "Field CA1" +391 126 208 75 1 1 1 "Field CA1, stratum lacunosum-moleculare" +399 126 208 75 1 1 1 "Field CA1, stratum oriens" +407 102 168 61 1 1 1 "Field CA1, pyramidal layer" +415 126 208 75 1 1 1 "Field CA1, stratum radiatum" +423 126 208 75 1 1 1 "Field CA2" +431 126 208 75 1 1 1 "Field CA2, stratum lacunosum-moleculare" +438 126 208 75 1 1 1 "Field CA2, stratum oriens" +446 102 168 61 1 1 1 "Field CA2, pyramidal layer" +454 126 208 75 1 1 1 "Field CA2, stratum radiatum" +463 126 208 75 1 1 1 "Field CA3" +471 126 208 75 1 1 1 "Field CA3, stratum lacunosum-moleculare" +479 126 208 75 1 1 1 "Field CA3, stratum lucidum" +486 126 208 75 1 1 1 "Field CA3, stratum oriens" +495 102 168 61 1 1 1 "Field CA3, pyramidal layer" +504 126 208 75 1 1 1 "Field CA3, stratum radiatum" +726 126 208 75 1 1 1 "Dentate gyrus" +10703 126 208 75 1 1 1 "Dentate gyrus, molecular layer" +10704 126 208 75 1 1 1 "Dentate gyrus, polymorph layer" +632 102 168 61 1 1 1 "Dentate gyrus, granule cell layer" 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"Entorhinal area, lateral part" +1121 50 184 37 1 1 1 "Entorhinal area, lateral part, layer 1" +20 50 184 37 1 1 1 "Entorhinal area, lateral part, layer 2" +999 50 184 37 1 1 1 "Entorhinal area, lateral part, layer 2/3" +715 50 184 37 1 1 1 "Entorhinal area, lateral part, layer 2a" +764 50 184 37 1 1 1 "Entorhinal area, lateral part, layer 2b" +52 50 184 37 1 1 1 "Entorhinal area, lateral part, layer 3" +92 50 184 37 1 1 1 "Entorhinal area, lateral part, layer 4" +312 50 184 37 1 1 1 "Entorhinal area, lateral part, layer 4/5" +139 50 184 37 1 1 1 "Entorhinal area, lateral part, layer 5" +387 50 184 37 1 1 1 "Entorhinal area, lateral part, layer 5/6" +28 50 184 37 1 1 1 "Entorhinal area, lateral part, layer 6a" +60 50 184 37 1 1 1 "Entorhinal area, lateral part, layer 6b" +926 50 184 37 1 1 1 "Entorhinal area, medial part, dorsal zone" +526 50 184 37 1 1 1 "Entorhinal area, medial part, dorsal zone, layer 1" +543 50 184 37 1 1 1 "Entorhinal area, medial part, dorsal zone, layer 2" +468 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+10693 114 213 105 1 1 1 "Parasubiculum, layer 1" +10694 114 213 105 1 1 1 "Parasubiculum, layer 2" +10695 114 213 105 1 1 1 "Parasubiculum, layer 3" +1037 72 200 60 1 1 1 "Postsubiculum" +10696 72 200 60 1 1 1 "Postsubiculum, layer 1" +10697 72 200 60 1 1 1 "Postsubiculum, layer 2" +10698 72 200 60 1 1 1 "Postsubiculum, layer 3" +1084 89 185 71 1 1 1 "Presubiculum" +10699 89 185 71 1 1 1 "Presubiculum, layer 1" +10700 89 185 71 1 1 1 "Presubiculum, layer 2" +10701 89 185 71 1 1 1 "Presubiculum, layer 3" +502 79 194 68 1 1 1 "Subiculum" +509 79 194 68 1 1 1 "Subiculum, dorsal part" +829 79 194 68 1 1 1 "Subiculum, dorsal part, molecular layer" +845 75 181 71 1 1 1 "Subiculum, dorsal part, pyramidal layer" +837 79 194 68 1 1 1 "Subiculum, dorsal part, stratum radiatum" +518 79 194 68 1 1 1 "Subiculum, ventral part" +853 79 194 68 1 1 1 "Subiculum, ventral part, molecular layer" +870 75 181 71 1 1 1 "Subiculum, ventral part, pyramidal layer" +861 79 194 68 1 1 1 "Subiculum, ventral part, stratum radiatum" +484682470 88 186 72 1 1 1 "Prosubiculum" +484682475 88 186 72 1 1 1 "Prosubiculum, dorsal part" +484682479 88 186 72 1 1 1 "Prosubiculum, dorsal part, molecular layer" +484682483 86 184 75 1 1 1 "Prosubiculum, dorsal part, pyramidal layer" +484682487 88 186 72 1 1 1 "Prosubiculum, dorsal part, stratum radiatum" +484682492 88 186 72 1 1 1 "Prosubiculum, ventral part" +484682496 88 186 72 1 1 1 "Prosubiculum, ventral part, molecular layer" +484682500 86 184 75 1 1 1 "Prosubiculum, ventral part, pyramidal layer" +484682504 88 186 72 1 1 1 "Prosubiculum, ventral part, stratum radiatum" +589508447 51 185 50 1 1 1 "Hippocampo-amygdalar transition area" +484682508 51 185 50 1 1 1 "Area prostriata" +703 138 218 135 1 1 1 "Cortical subplate" +16 138 218 135 1 1 1 "Layer 6b, isocortex" +583 138 218 135 1 1 1 "Claustrum" +942 160 238 157 1 1 1 "Endopiriform nucleus" +952 160 238 157 1 1 1 "Endopiriform nucleus, dorsal part" +966 160 238 157 1 1 1 "Endopiriform nucleus, ventral part" +131 144 235 141 1 1 1 "Lateral amygdalar nucleus" +295 157 231 156 1 1 1 "Basolateral amygdalar nucleus" +303 157 231 156 1 1 1 "Basolateral amygdalar nucleus, anterior part" +311 157 231 156 1 1 1 "Basolateral amygdalar nucleus, posterior part" +451 157 231 156 1 1 1 "Basolateral amygdalar nucleus, ventral part" +319 132 234 129 1 1 1 "Basomedial amygdalar nucleus" +327 132 234 129 1 1 1 "Basomedial amygdalar nucleus, anterior part" +334 132 234 129 1 1 1 "Basomedial amygdalar nucleus, posterior part" +780 151 236 147 1 1 1 "Posterior amygdalar nucleus" +623 152 214 249 1 1 1 "Cerebral nuclei" +477 152 214 249 1 1 1 "Striatum" +485 152 214 249 1 1 1 "Striatum dorsal region" +672 152 214 249 1 1 1 "Caudoputamen" +493 128 205 248 1 1 1 "Striatum ventral region" +56 128 205 248 1 1 1 "Nucleus accumbens" +998 128 205 248 1 1 1 "Fundus of striatum" +754 128 205 248 1 1 1 "Olfactory tubercle" +481 128 205 248 1 1 1 "Islands of Calleja" +489 128 205 248 1 1 1 "Major island of Calleja" 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128 192 226 1 1 1 "Central amygdalar nucleus, lateral part" +559 128 192 226 1 1 1 "Central amygdalar nucleus, medial part" +1105 128 192 226 1 1 1 "Intercalated amygdalar nucleus" +403 128 192 226 1 1 1 "Medial amygdalar nucleus" +411 128 192 226 1 1 1 "Medial amygdalar nucleus, anterodorsal part" +418 128 192 226 1 1 1 "Medial amygdalar nucleus, anteroventral part" +426 128 192 226 1 1 1 "Medial amygdalar nucleus, posterodorsal part" +472 128 192 226 1 1 1 "Medial amygdalar nucleus, posterodorsal part, sublayer a" +480 128 192 226 1 1 1 "Medial amygdalar nucleus, posterodorsal part, sublayer b" +487 128 192 226 1 1 1 "Medial amygdalar nucleus, posterodorsal part, sublayer c" +435 128 192 226 1 1 1 "Medial amygdalar nucleus, posteroventral part" +803 133 153 204 1 1 1 "Pallidum" +818 133 153 204 1 1 1 "Pallidum, dorsal region" +1022 133 153 204 1 1 1 "Globus pallidus, external segment" +1031 133 153 204 1 1 1 "Globus pallidus, internal segment" +835 162 177 216 1 1 1 "Pallidum, ventral region" +342 162 177 216 1 1 1 "Substantia innominata" +298 162 177 216 1 1 1 "Magnocellular nucleus" +826 150 167 211 1 1 1 "Pallidum, medial region" +904 150 167 211 1 1 1 "Medial septal complex" +564 150 167 211 1 1 1 "Medial septal nucleus" +596 150 167 211 1 1 1 "Diagonal band nucleus" +581 150 167 211 1 1 1 "Triangular nucleus of septum" +809 179 192 223 1 1 1 "Pallidum, caudal region" +351 179 192 223 1 1 1 "Bed nuclei of the stria terminalis" +359 179 192 223 1 1 1 "Bed nuclei of the stria terminalis, anterior division" +537 179 192 223 1 1 1 "Bed nuclei of the stria terminalis, anterior division, anterolateral area" +498 179 192 223 1 1 1 "Bed nuclei of the stria terminalis, anterior division, anteromedial area" +505 179 192 223 1 1 1 "Bed nuclei of the stria terminalis, anterior division, dorsomedial nucleus" +513 179 192 223 1 1 1 "Bed nuclei of the stria terminalis, anterior division, fusiform nucleus" +546 179 192 223 1 1 1 "Bed nuclei of the stria terminalis, anterior division, juxtacapsular nucleus" +521 179 192 223 1 1 1 "Bed nuclei of the stria terminalis, anterior division, magnocellular nucleus" +554 179 192 223 1 1 1 "Bed nuclei of the stria terminalis, anterior division, oval nucleus" +562 179 192 223 1 1 1 "Bed nuclei of the stria terminalis, anterior division, rhomboid nucleus" +529 179 192 223 1 1 1 "Bed nuclei of the stria terminalis, anterior division, ventral nucleus" +367 179 192 223 1 1 1 "Bed nuclei of the stria terminalis, posterior division" +569 179 192 223 1 1 1 "Bed nuclei of the stria terminalis, posterior division, dorsal nucleus" +578 179 192 223 1 1 1 "Bed nuclei of the stria terminalis, posterior division, principal nucleus" +585 179 192 223 1 1 1 "Bed nuclei of the stria terminalis, posterior division, interfascicular nucleus" +594 179 192 223 1 1 1 "Bed nuclei of the stria terminalis, posterior division, transverse nucleus" +602 179 192 223 1 1 1 "Bed nuclei of the stria terminalis, posterior division, strial extension" +287 179 192 223 1 1 1 "Bed nucleus of the anterior commissure" +343 255 112 128 1 1 1 "Brain stem" +1129 255 112 128 1 1 1 "Interbrain" +549 255 112 128 1 1 1 "Thalamus" +864 255 128 132 1 1 1 "Thalamus, sensory-motor cortex related" +637 255 128 132 1 1 1 "Ventral group of the dorsal thalamus" +629 255 128 132 1 1 1 "Ventral anterior-lateral complex of the thalamus" +685 255 128 132 1 1 1 "Ventral medial nucleus of the thalamus" +709 255 128 132 1 1 1 "Ventral posterior complex of the thalamus" +718 255 128 132 1 1 1 "Ventral posterolateral nucleus of the thalamus" +725 255 128 132 1 1 1 "Ventral posterolateral nucleus of the thalamus, parvicellular part" +733 255 128 132 1 1 1 "Ventral posteromedial nucleus of the thalamus" +741 255 128 132 1 1 1 "Ventral posteromedial nucleus of the thalamus, parvicellular part" +563807435 255 128 132 1 1 1 "Posterior triangular thalamic nucleus" +406 255 128 132 1 1 1 "Subparafascicular nucleus" +414 255 128 132 1 1 1 "Subparafascicular nucleus, magnocellular part" +422 255 128 132 1 1 1 "Subparafascicular nucleus, parvicellular part" +609 255 128 132 1 1 1 "Subparafascicular area" +1044 255 128 132 1 1 1 "Peripeduncular nucleus" +1008 255 128 132 1 1 1 "Geniculate group, dorsal thalamus" +475 255 128 132 1 1 1 "Medial geniculate complex" +1072 255 128 132 1 1 1 "Medial geniculate complex, dorsal part" +1079 255 128 132 1 1 1 "Medial geniculate complex, ventral part" +1088 255 128 132 1 1 1 "Medial geniculate complex, medial part" +170 255 128 132 1 1 1 "Dorsal part of the lateral geniculate complex" +496345664 255 128 132 1 1 1 "Dorsal part of the lateral geniculate complex, shell" +496345668 255 128 132 1 1 1 "Dorsal part of the lateral geniculate complex, core" +496345672 255 128 132 1 1 1 "Dorsal part of the lateral geniculate complex, ipsilateral zone" +856 255 144 159 1 1 1 "Thalamus, polymodal association cortex related" +138 255 144 159 1 1 1 "Lateral group of the dorsal thalamus" +218 255 144 159 1 1 1 "Lateral posterior nucleus of the thalamus" +1020 255 144 159 1 1 1 "Posterior complex of the thalamus" +1029 255 144 159 1 1 1 "Posterior limiting nucleus of the thalamus" +325 255 144 159 1 1 1 "Suprageniculate nucleus" +560581551 255 144 159 1 1 1 "Ethmoid nucleus of the thalamus" +560581555 255 144 159 1 1 1 "Retroethmoid nucleus" +239 255 144 159 1 1 1 "Anterior group of the dorsal thalamus" +255 255 144 159 1 1 1 "Anteroventral nucleus of thalamus" +127 255 144 159 1 1 1 "Anteromedial nucleus" +1096 255 144 159 1 1 1 "Anteromedial nucleus, dorsal part" +1104 255 144 159 1 1 1 "Anteromedial nucleus, ventral part" +64 255 144 159 1 1 1 "Anterodorsal nucleus" +1120 255 144 159 1 1 1 "Interanteromedial nucleus of the thalamus" +1113 255 144 159 1 1 1 "Interanterodorsal nucleus of the thalamus" +155 255 144 159 1 1 1 "Lateral dorsal nucleus of thalamus" +444 255 144 159 1 1 1 "Medial group of the dorsal thalamus" +59 255 144 159 1 1 1 "Intermediodorsal nucleus of the thalamus" +362 255 144 159 1 1 1 "Mediodorsal nucleus of thalamus" +617 255 144 159 1 1 1 "Mediodorsal nucleus of the thalamus, central part" +626 255 144 159 1 1 1 "Mediodorsal nucleus of the thalamus, lateral part" +636 255 144 159 1 1 1 "Mediodorsal nucleus of the thalamus, medial part" +366 255 144 159 1 1 1 "Submedial nucleus of the thalamus" +1077 255 144 159 1 1 1 "Perireunensis nucleus" +571 255 144 159 1 1 1 "Midline group of the dorsal thalamus" +149 255 144 159 1 1 1 "Paraventricular nucleus of the thalamus" +15 255 144 159 1 1 1 "Parataenial nucleus" +181 255 144 159 1 1 1 "Nucleus of reuniens" +560581559 255 144 159 1 1 1 "Xiphoid thalamic nucleus" +51 255 144 159 1 1 1 "Intralaminar nuclei of the dorsal thalamus" +189 255 144 159 1 1 1 "Rhomboid nucleus" +599 255 144 159 1 1 1 "Central medial nucleus of the thalamus" +907 255 144 159 1 1 1 "Paracentral nucleus" +575 255 144 159 1 1 1 "Central lateral nucleus of the thalamus" +930 255 144 159 1 1 1 "Parafascicular nucleus" +560581563 255 144 159 1 1 1 "Posterior intralaminar thalamic nucleus" +262 255 144 159 1 1 1 "Reticular nucleus of the thalamus" +1014 255 144 159 1 1 1 "Geniculate group, ventral thalamus" +27 255 144 159 1 1 1 "Intergeniculate leaflet of the lateral geniculate complex" +563807439 255 144 159 1 1 1 "Intermediate geniculate nucleus" +178 255 144 159 1 1 1 "Ventral part of the lateral geniculate complex" +300 255 144 159 1 1 1 "Ventral part of the lateral geniculate complex, lateral zone" +316 255 144 159 1 1 1 "Ventral part of the lateral geniculate complex, medial zone" +321 255 144 159 1 1 1 "Subgeniculate nucleus" +958 255 144 159 1 1 1 "Epithalamus" +483 255 144 159 1 1 1 "Medial habenula" +186 255 144 159 1 1 1 "Lateral habenula" +953 255 144 159 1 1 1 "Pineal body" +1097 230 68 56 1 1 1 "Hypothalamus" +157 255 93 80 1 1 1 "Periventricular zone" +390 255 93 80 1 1 1 "Supraoptic nucleus" +332 255 93 80 1 1 1 "Accessory supraoptic group" +432 255 93 80 1 1 1 "Nucleus circularis" +38 255 93 80 1 1 1 "Paraventricular hypothalamic nucleus" +71 255 93 80 1 1 1 "Paraventricular hypothalamic nucleus, magnocellular division" +47 255 93 80 1 1 1 "Paraventricular hypothalamic nucleus, magnocellular division, anterior magnocellular part" +79 255 93 80 1 1 1 "Paraventricular hypothalamic nucleus, magnocellular division, medial magnocellular part" +103 255 93 80 1 1 1 "Paraventricular hypothalamic nucleus, magnocellular division, posterior magnocellular part" +652 255 93 80 1 1 1 "Paraventricular hypothalamic nucleus, magnocellular division, posterior magnocellular part, lateral zone" +660 255 93 80 1 1 1 "Paraventricular hypothalamic nucleus, magnocellular division, posterior magnocellular part, medial zone" +94 255 93 80 1 1 1 "Paraventricular hypothalamic nucleus, parvicellular division" +55 255 93 80 1 1 1 "Paraventricular hypothalamic nucleus, parvicellular division, anterior parvicellular part" +87 255 93 80 1 1 1 "Paraventricular hypothalamic nucleus, parvicellular division, medial parvicellular part, dorsal zone" +110 255 93 80 1 1 1 "Paraventricular hypothalamic nucleus, parvicellular division, periventricular part" +30 255 93 80 1 1 1 "Periventricular hypothalamic nucleus, anterior part" +118 255 93 80 1 1 1 "Periventricular hypothalamic nucleus, intermediate part" +223 255 93 80 1 1 1 "Arcuate hypothalamic nucleus" +141 255 85 71 1 1 1 "Periventricular region" +72 255 85 71 1 1 1 "Anterodorsal preoptic nucleus" +80 255 85 71 1 1 1 "Anterior hypothalamic area" +263 255 85 71 1 1 1 "Anteroventral preoptic nucleus" +272 255 85 71 1 1 1 "Anteroventral periventricular nucleus" +830 255 85 71 1 1 1 "Dorsomedial nucleus of the hypothalamus" +668 255 85 71 1 1 1 "Dorsomedial nucleus of the hypothalamus, anterior part" +676 255 85 71 1 1 1 "Dorsomedial nucleus of the hypothalamus, posterior part" +684 255 85 71 1 1 1 "Dorsomedial nucleus of the hypothalamus, ventral part" +452 255 85 71 1 1 1 "Median preoptic nucleus" +523 255 85 71 1 1 1 "Medial preoptic area" +763 255 85 71 1 1 1 "Vascular organ of the lamina terminalis" +914 255 85 71 1 1 1 "Posterodorsal preoptic nucleus" +1109 255 85 71 1 1 1 "Parastrial nucleus" +1124 255 85 71 1 1 1 "Suprachiasmatic preoptic nucleus" +126 255 85 71 1 1 1 "Periventricular hypothalamic nucleus, posterior part" +133 255 85 71 1 1 1 "Periventricular hypothalamic nucleus, preoptic part" +347 255 85 71 1 1 1 "Subparaventricular zone" +286 255 85 71 1 1 1 "Suprachiasmatic nucleus" +338 255 85 71 1 1 1 "Subfornical organ" +576073699 255 85 71 1 1 1 "Ventromedial preoptic nucleus" +689 255 85 71 1 1 1 "Ventrolateral preoptic nucleus" +467 255 76 62 1 1 1 "Hypothalamic medial zone" +88 255 76 62 1 1 1 "Anterior hypothalamic nucleus" +700 255 76 62 1 1 1 "Anterior hypothalamic nucleus, anterior part" +708 255 76 62 1 1 1 "Anterior hypothalamic nucleus, central part" +716 255 76 62 1 1 1 "Anterior hypothalamic nucleus, dorsal part" +724 255 76 62 1 1 1 "Anterior hypothalamic nucleus, posterior part" +331 255 76 62 1 1 1 "Mammillary body" +210 255 76 62 1 1 1 "Lateral mammillary nucleus" +491 255 76 62 1 1 1 "Medial mammillary nucleus" +732 255 76 62 1 1 1 "Medial mammillary nucleus, median part" +606826647 255 76 62 1 1 1 "Medial mammillary nucleus, lateral part" +606826651 255 76 62 1 1 1 "Medial mammillary nucleus, medial part" +606826655 255 76 62 1 1 1 "Medial mammillary nucleus, posterior part" +606826659 255 76 62 1 1 1 "Medial mammillary nucleus, dorsal part" +525 255 76 62 1 1 1 "Supramammillary nucleus" +1110 255 76 62 1 1 1 "Supramammillary nucleus, lateral part" +1118 255 76 62 1 1 1 "Supramammillary nucleus, medial part" +557 255 76 62 1 1 1 "Tuberomammillary nucleus" +1126 255 76 62 1 1 1 "Tuberomammillary nucleus, dorsal part" +1 255 76 62 1 1 1 "Tuberomammillary nucleus, ventral part" +515 255 76 62 1 1 1 "Medial preoptic nucleus" +740 255 76 62 1 1 1 "Medial preoptic nucleus, central part" +748 255 76 62 1 1 1 "Medial preoptic nucleus, lateral part" +756 255 76 62 1 1 1 "Medial preoptic nucleus, medial part" +980 255 76 62 1 1 1 "Dorsal premammillary nucleus" +1004 255 76 62 1 1 1 "Ventral premammillary nucleus" +63 255 76 62 1 1 1 "Paraventricular hypothalamic nucleus, descending division" +439 255 76 62 1 1 1 "Paraventricular hypothalamic nucleus, descending division, dorsal parvicellular part" +447 255 76 62 1 1 1 "Paraventricular hypothalamic nucleus, descending division, forniceal part" +455 255 76 62 1 1 1 "Paraventricular hypothalamic nucleus, descending division, lateral parvicellular part" +464 255 76 62 1 1 1 "Paraventricular hypothalamic nucleus, descending division, medial parvicellular part, ventral zone" +693 255 76 62 1 1 1 "Ventromedial hypothalamic nucleus" +761 255 76 62 1 1 1 "Ventromedial hypothalamic nucleus, anterior part" +769 255 76 62 1 1 1 "Ventromedial hypothalamic nucleus, central part" +777 255 76 62 1 1 1 "Ventromedial hypothalamic nucleus, dorsomedial part" +785 255 76 62 1 1 1 "Ventromedial hypothalamic nucleus, ventrolateral part" +946 255 76 62 1 1 1 "Posterior hypothalamic nucleus" +290 242 72 59 1 1 1 "Hypothalamic lateral zone" +194 242 72 59 1 1 1 "Lateral hypothalamic area" +226 242 72 59 1 1 1 "Lateral preoptic area" +356 242 72 59 1 1 1 "Preparasubthalamic nucleus" +364 242 72 59 1 1 1 "Parasubthalamic nucleus" +576073704 242 72 59 1 1 1 "Perifornical nucleus" +173 242 72 59 1 1 1 "Retrochiasmatic area" +470 242 72 59 1 1 1 "Subthalamic nucleus" +614 242 72 59 1 1 1 "Tuberal nucleus" +797 242 72 59 1 1 1 "Zona incerta" +796 242 72 59 1 1 1 "Dopaminergic A13 group" +804 242 72 59 1 1 1 "Fields of Forel" +10671 242 72 59 1 1 1 "Median eminence" +313 255 100 255 1 1 1 "Midbrain" +339 255 122 255 1 1 1 "Midbrain, sensory related" +302 255 122 255 1 1 1 "Superior colliculus, sensory related" +851 255 122 255 1 1 1 "Superior colliculus, optic layer" +842 255 122 255 1 1 1 "Superior colliculus, superficial gray layer" +834 255 122 255 1 1 1 "Superior colliculus, zonal layer" +4 255 122 255 1 1 1 "Inferior colliculus" +811 255 122 255 1 1 1 "Inferior colliculus, central nucleus" +820 255 122 255 1 1 1 "Inferior colliculus, dorsal nucleus" +828 255 122 255 1 1 1 "Inferior colliculus, external nucleus" +580 255 122 255 1 1 1 "Nucleus of the brachium of the inferior colliculus" +271 255 122 255 1 1 1 "Nucleus sagulum" +874 255 122 255 1 1 1 "Parabigeminal nucleus" +460 255 122 255 1 1 1 "Midbrain trigeminal nucleus" +599626923 255 122 255 1 1 1 "Subcommissural organ" +323 255 144 255 1 1 1 "Midbrain, motor related" +381 255 144 255 1 1 1 "Substantia nigra, reticular part" +749 255 144 255 1 1 1 "Ventral tegmental area" +607344830 255 144 255 1 1 1 "Paranigral nucleus" +246 255 144 255 1 1 1 "Midbrain reticular nucleus, retrorubral area" +128 255 144 255 1 1 1 "Midbrain reticular nucleus" +539 255 144 255 1 1 1 "Midbrain reticular nucleus, magnocellular part" +548 255 144 255 1 1 1 "Midbrain reticular nucleus, magnocellular part, general" +555 255 144 255 1 1 1 "Midbrain reticular nucleus, parvicellular part" +294 255 144 255 1 1 1 "Superior colliculus, motor related" +26 255 144 255 1 1 1 "Superior colliculus, motor related, deep gray layer" +42 255 144 255 1 1 1 "Superior colliculus, motor related, deep white layer" +17 255 144 255 1 1 1 "Superior colliculus, motor related, intermediate white layer" +10 255 144 255 1 1 1 "Superior colliculus, motor related, intermediate gray layer" +494 255 144 255 1 1 1 "Superior colliculus, motor related, intermediate gray layer, sublayer a" +503 255 144 255 1 1 1 "Superior colliculus, motor related, intermediate gray layer, sublayer b" +511 255 144 255 1 1 1 "Superior colliculus, motor related, intermediate gray layer, sublayer c" +795 255 144 255 1 1 1 "Periaqueductal gray" +50 255 144 255 1 1 1 "Precommissural nucleus" +67 255 144 255 1 1 1 "Interstitial nucleus of Cajal" +587 255 144 255 1 1 1 "Nucleus of Darkschewitsch" +614454277 255 144 255 1 1 1 "Supraoculomotor periaqueductal gray" +1100 255 144 255 1 1 1 "Pretectal region" +215 255 144 255 1 1 1 "Anterior pretectal nucleus" +531 255 144 255 1 1 1 "Medial pretectal area" +628 255 144 255 1 1 1 "Nucleus of the optic tract" +634 255 144 255 1 1 1 "Nucleus of the posterior commissure" +706 255 144 255 1 1 1 "Olivary pretectal nucleus" +1061 255 144 255 1 1 1 "Posterior pretectal nucleus" +549009203 255 144 255 1 1 1 "Retroparafascicular nucleus" +549009207 255 144 255 1 1 1 "Intercollicular nucleus" +616 255 144 255 1 1 1 "Cuneiform nucleus" +214 255 144 255 1 1 1 "Red nucleus" +35 255 144 255 1 1 1 "Oculomotor nucleus" +549009211 255 144 255 1 1 1 "Medial accesory oculomotor nucleus" +975 255 144 255 1 1 1 "Edinger-Westphal nucleus" +115 255 144 255 1 1 1 "Trochlear nucleus" +606826663 255 144 255 1 1 1 "Paratrochlear nucleus" +757 255 144 255 1 1 1 "Ventral tegmental nucleus" +231 255 144 255 1 1 1 "Anterior tegmental nucleus" +66 255 144 255 1 1 1 "Lateral terminal nucleus of the accessory optic tract" +75 255 144 255 1 1 1 "Dorsal terminal nucleus of the accessory optic tract" +58 255 144 255 1 1 1 "Medial terminal nucleus of the accessory optic tract" +615 255 144 255 1 1 1 "Substantia nigra, lateral part" +348 255 144 255 1 1 1 "Midbrain, behavioral state related" +374 255 166 255 1 1 1 "Substantia nigra, compact part" +1052 255 166 255 1 1 1 "Pedunculopontine nucleus" +165 255 166 255 1 1 1 "Midbrain raphe nuclei" +12 255 166 255 1 1 1 "Interfascicular nucleus raphe" +100 255 166 255 1 1 1 "Interpeduncular nucleus" +607344834 255 166 255 1 1 1 "Interpeduncular nucleus, rostral" +607344838 255 166 255 1 1 1 "Interpeduncular nucleus, caudal" +607344842 255 166 255 1 1 1 "Interpeduncular nucleus, apical" +607344846 255 166 255 1 1 1 "Interpeduncular nucleus, lateral" +607344850 255 166 255 1 1 1 "Interpeduncular nucleus, intermediate" +607344854 255 166 255 1 1 1 "Interpeduncular nucleus, dorsomedial" +607344858 255 166 255 1 1 1 "Interpeduncular nucleus, dorsolateral" +607344862 255 166 255 1 1 1 "Interpeduncular nucleus, rostrolateral" +197 255 166 255 1 1 1 "Rostral linear nucleus raphe" +591 255 166 255 1 1 1 "Central linear nucleus raphe" +872 255 166 255 1 1 1 "Dorsal nucleus raphe" +1065 255 155 136 1 1 1 "Hindbrain" +771 255 155 136 1 1 1 "Pons" +1132 255 174 111 1 1 1 "Pons, sensory related" +612 255 174 111 1 1 1 "Nucleus of the lateral lemniscus" +82 255 174 111 1 1 1 "Nucleus of the lateral lemniscus, dorsal part" +90 255 174 111 1 1 1 "Nucleus of the lateral lemniscus, horizontal part" +99 255 174 111 1 1 1 "Nucleus of the lateral lemniscus, ventral part" +7 255 174 111 1 1 1 "Principal sensory nucleus of the trigeminal" +867 255 174 111 1 1 1 "Parabrachial nucleus" +123 255 174 111 1 1 1 "Koelliker-Fuse subnucleus" +881 255 174 111 1 1 1 "Parabrachial nucleus, lateral division" +860 255 174 111 1 1 1 "Parabrachial nucleus, lateral division, central lateral part" +868 255 174 111 1 1 1 "Parabrachial nucleus, lateral division, dorsal lateral part" +875 255 174 111 1 1 1 "Parabrachial nucleus, lateral division, external lateral part" +883 255 174 111 1 1 1 "Parabrachial nucleus, lateral division, superior lateral part" +891 255 174 111 1 1 1 "Parabrachial nucleus, lateral division, ventral lateral part" +890 255 174 111 1 1 1 "Parabrachial nucleus, medial division" +899 255 174 111 1 1 1 "Parabrachial nucleus, medial division, external medial part" +915 255 174 111 1 1 1 "Parabrachial nucleus, medial division, medial medial part" +923 255 174 111 1 1 1 "Parabrachial nucleus, medial division, ventral medial part" +398 255 174 111 1 1 1 "Superior olivary complex" +122 255 174 111 1 1 1 "Superior olivary complex, periolivary region" +105 255 174 111 1 1 1 "Superior olivary complex, medial part" +114 255 174 111 1 1 1 "Superior olivary complex, lateral part" +987 255 186 134 1 1 1 "Pons, motor related" +280 255 186 134 1 1 1 "Barrington's nucleus" +880 255 186 134 1 1 1 "Dorsal tegmental nucleus" +283 255 186 134 1 1 1 "Lateral tegmental nucleus" +599626927 255 186 134 1 1 1 "Posterodorsal tegmental nucleus" +898 255 186 134 1 1 1 "Pontine central gray" +931 255 186 134 1 1 1 "Pontine gray" +1093 255 186 134 1 1 1 "Pontine reticular nucleus, caudal part" +552 255 186 134 1 1 1 "Pontine reticular nucleus, ventral part" +318 255 186 134 1 1 1 "Supragenual nucleus" +462 255 186 134 1 1 1 "Superior salivatory nucleus" +534 255 186 134 1 1 1 "Supratrigeminal nucleus" +574 255 186 134 1 1 1 "Tegmental reticular nucleus" +621 255 186 134 1 1 1 "Motor nucleus of trigeminal" +549009215 255 186 134 1 1 1 "Peritrigeminal zone" +549009219 255 186 134 1 1 1 "Accessory trigeminal nucleus" +549009223 255 186 134 1 1 1 "Parvicellular motor 5 nucleus" +549009227 255 186 134 1 1 1 "Intertrigeminal nucleus" +1117 255 195 149 1 1 1 "Pons, behavioral state related" +679 255 195 149 1 1 1 "Superior central nucleus raphe" +137 255 195 149 1 1 1 "Superior central nucleus raphe, lateral part" +130 255 195 149 1 1 1 "Superior central nucleus raphe, medial part" +147 255 195 149 1 1 1 "Locus ceruleus" +162 255 195 149 1 1 1 "Laterodorsal tegmental nucleus" +604 255 195 149 1 1 1 "Nucleus incertus" +146 255 195 149 1 1 1 "Pontine reticular nucleus" +238 255 195 149 1 1 1 "Nucleus raphe pontis" +350 255 195 149 1 1 1 "Subceruleus nucleus" +358 255 195 149 1 1 1 "Sublaterodorsal nucleus" +354 255 155 205 1 1 1 "Medulla" +386 255 165 210 1 1 1 "Medulla, sensory related" +207 255 165 210 1 1 1 "Area postrema" +607 255 165 210 1 1 1 "Cochlear nuclei" +112 255 165 210 1 1 1 "Granular lamina of the cochlear nuclei" +560 255 165 210 1 1 1 "Cochlear nucleus, subpedunclular granular region" +96 255 165 210 1 1 1 "Dorsal cochlear nucleus" +101 255 165 210 1 1 1 "Ventral cochlear nucleus" +720 255 165 210 1 1 1 "Dorsal column nuclei" +711 255 165 210 1 1 1 "Cuneate nucleus" +1039 255 165 210 1 1 1 "Gracile nucleus" +903 255 165 210 1 1 1 "External cuneate nucleus" +642 255 165 210 1 1 1 "Nucleus of the trapezoid body" +651 255 165 210 1 1 1 "Nucleus of the solitary tract" +659 255 165 210 1 1 1 "Nucleus of the solitary tract, central part" +666 255 165 210 1 1 1 "Nucleus of the solitary tract, commissural part" +674 255 165 210 1 1 1 "Nucleus of the solitary tract, gelatinous part" +682 255 165 210 1 1 1 "Nucleus of the solitary tract, lateral part" +691 255 165 210 1 1 1 "Nucleus of the solitary tract, medial part" +429 255 165 210 1 1 1 "Spinal nucleus of the trigeminal, caudal part" +437 255 165 210 1 1 1 "Spinal nucleus of the trigeminal, interpolar part" +445 255 165 210 1 1 1 "Spinal nucleus of the trigeminal, oral part" +77 255 165 210 1 1 1 "Spinal nucleus of the trigeminal, oral part, caudal dorsomedial part" +53 255 165 210 1 1 1 "Spinal nucleus of the trigeminal, oral part, middle dorsomedial part, dorsal zone" +61 255 165 210 1 1 1 "Spinal nucleus of the trigeminal, oral part, middle dorsomedial part, ventral zone" +45 255 165 210 1 1 1 "Spinal nucleus of the trigeminal, oral part, rostral dorsomedial part" +69 255 165 210 1 1 1 "Spinal nucleus of the trigeminal, oral part, ventrolateral part" +589508451 255 165 210 1 1 1 "Paratrigeminal nucleus" +789 255 165 210 1 1 1 "Nucleus z" +370 255 179 217 1 1 1 "Medulla, motor related" +653 255 179 217 1 1 1 "Abducens nucleus" +568 255 179 217 1 1 1 "Accessory abducens nucleus" +661 255 179 217 1 1 1 "Facial motor nucleus" +576 255 179 217 1 1 1 "Accessory facial motor nucleus" +640 255 179 217 1 1 1 "Efferent vestibular nucleus" +135 255 179 217 1 1 1 "Nucleus ambiguus" +939 255 179 217 1 1 1 "Nucleus ambiguus, dorsal division" +143 255 179 217 1 1 1 "Nucleus ambiguus, ventral division" +839 255 179 217 1 1 1 "Dorsal motor nucleus of the vagus nerve" +887 255 179 217 1 1 1 "Efferent cochlear group" +1048 255 179 217 1 1 1 "Gigantocellular reticular nucleus" +372 255 179 217 1 1 1 "Infracerebellar nucleus" +83 255 179 217 1 1 1 "Inferior olivary complex" +136 255 179 217 1 1 1 "Intermediate reticular nucleus" +106 255 179 217 1 1 1 "Inferior salivatory nucleus" +203 255 179 217 1 1 1 "Linear nucleus of the medulla" +235 255 179 217 1 1 1 "Lateral reticular nucleus" +955 255 179 217 1 1 1 "Lateral reticular nucleus, magnocellular part" +963 255 179 217 1 1 1 "Lateral reticular nucleus, parvicellular part" +307 255 179 217 1 1 1 "Magnocellular reticular nucleus" +395 255 179 217 1 1 1 "Medullary reticular nucleus" +1098 255 179 217 1 1 1 "Medullary reticular nucleus, dorsal part" +1107 255 179 217 1 1 1 "Medullary reticular nucleus, ventral part" +852 255 179 217 1 1 1 "Parvicellular reticular nucleus" +859 255 179 217 1 1 1 "Parasolitary nucleus" +938 255 179 217 1 1 1 "Paragigantocellular reticular nucleus" +970 255 179 217 1 1 1 "Paragigantocellular reticular nucleus, dorsal part" +978 255 179 217 1 1 1 "Paragigantocellular reticular nucleus, lateral part" +154 255 179 217 1 1 1 "Perihypoglossal nuclei" +161 255 179 217 1 1 1 "Nucleus intercalatus" +177 255 179 217 1 1 1 "Nucleus of Roller" +169 255 179 217 1 1 1 "Nucleus prepositus" +995 255 179 217 1 1 1 "Paramedian reticular nucleus" +1069 255 179 217 1 1 1 "Parapyramidal nucleus" +185 255 179 217 1 1 1 "Parapyramidal nucleus, deep part" +193 255 179 217 1 1 1 "Parapyramidal nucleus, superficial part" +701 255 179 217 1 1 1 "Vestibular nuclei" +209 255 179 217 1 1 1 "Lateral vestibular nucleus" +202 255 179 217 1 1 1 "Medial vestibular nucleus" +225 255 179 217 1 1 1 "Spinal vestibular nucleus" +217 255 179 217 1 1 1 "Superior vestibular nucleus" +765 255 179 217 1 1 1 "Nucleus x" +773 255 179 217 1 1 1 "Hypoglossal nucleus" +781 255 179 217 1 1 1 "Nucleus y" +76 255 179 217 1 1 1 "Interstitial nucleus of the vestibular nerve" +379 255 198 226 1 1 1 "Medulla, behavioral state related" +206 255 198 226 1 1 1 "Nucleus raphe magnus" +230 255 198 226 1 1 1 "Nucleus raphe pallidus" +222 255 198 226 1 1 1 "Nucleus raphe obscurus" +512 240 240 128 1 1 1 "Cerebellum" +528 240 240 128 1 1 1 "Cerebellar cortex" +1144 255 252 145 1 1 1 "Cerebellar cortex, molecular layer" +1145 255 252 145 1 1 1 "Cerebellar cortex, Purkinje layer" +1143 236 231 84 1 1 1 "Cerebellar cortex, granular layer" +645 255 252 145 1 1 1 "Vermal regions" +912 255 252 145 1 1 1 "Lingula (I)" +10707 255 252 145 1 1 1 "Lingula (I), molecular layer" +10706 255 252 145 1 1 1 "Lingula (I), Purkinje layer" +10705 236 231 84 1 1 1 "Lingula (I), granular layer" +920 255 252 145 1 1 1 "Central lobule" +976 255 252 145 1 1 1 "Lobule II" +10710 255 252 145 1 1 1 "Lobule II, molecular layer" +10709 255 252 145 1 1 1 "Lobule II, Purkinje layer" +10708 236 231 84 1 1 1 "Lobule II, granular layer" +984 255 252 145 1 1 1 "Lobule III" +10713 255 252 145 1 1 1 "Lobule III, molecular layer" +10712 255 252 145 1 1 1 "Lobule III, Purkinje layer" +10711 236 231 84 1 1 1 "Lobule III, granular layer" +928 255 252 145 1 1 1 "Culmen" +992 255 252 145 1 1 1 "Lobule IV" +10716 255 252 145 1 1 1 "Lobule IV, molecular layer" +10715 255 252 145 1 1 1 "Lobule IV, Purkinje layer" +10714 236 231 84 1 1 1 "Lobule IV, granular layer" +1001 255 252 145 1 1 1 "Lobule V" +10719 255 252 145 1 1 1 "Lobule V, molecular layer" +10718 255 252 145 1 1 1 "Lobule V, Purkinje layer" +10717 236 231 84 1 1 1 "Lobule V, granular layer" +1091 255 252 145 1 1 1 "Lobules IV-V" +10722 255 252 145 1 1 1 "Lobules IV-V, molecular layer" +10721 255 252 145 1 1 1 "Lobules IV-V, Purkinje layer" +10720 236 231 84 1 1 1 "Lobules IV-V, granular layer" +936 255 252 145 1 1 1 "Declive (VI)" +10725 255 252 145 1 1 1 "Declive (VI), molecular layer" +10724 255 252 145 1 1 1 "Declive (VI), Purkinje layer" +10723 236 231 84 1 1 1 "Declive (VI), granular layer" +944 255 252 145 1 1 1 "Folium-tuber vermis (VII)" +10728 255 252 145 1 1 1 "Folium-tuber vermis (VII), molecular layer" +10727 255 252 145 1 1 1 "Folium-tuber vermis (VII), Purkinje layer" +10726 236 231 84 1 1 1 "Folium-tuber vermis (VII), granular layer" +951 255 252 145 1 1 1 "Pyramus (VIII)" +10731 255 252 145 1 1 1 "Pyramus (VIII), molecular layer" +10730 255 252 145 1 1 1 "Pyramus (VIII), Purkinje layer" +10729 236 231 84 1 1 1 "Pyramus (VIII), granular layer" +957 255 252 145 1 1 1 "Uvula (IX)" +10734 255 252 145 1 1 1 "Uvula (IX), molecular layer" +10733 255 252 145 1 1 1 "Uvula (IX), Purkinje layer" +10732 236 231 84 1 1 1 "Uvula (IX), granular layer" +968 255 252 145 1 1 1 "Nodulus (X)" +10737 255 252 145 1 1 1 "Nodulus (X), molecular layer" +10736 255 252 145 1 1 1 "Nodulus (X), Purkinje layer" +10735 236 231 84 1 1 1 "Nodulus (X), granular layer" +1073 255 252 145 1 1 1 "Hemispheric regions" +1007 255 252 145 1 1 1 "Simple lobule" +10674 255 252 145 1 1 1 "Simple lobule, molecular layer" +10673 255 252 145 1 1 1 "Simple lobule, Purkinje layer" +10672 236 231 84 1 1 1 "Simple lobule, granular layer" +1017 255 252 145 1 1 1 "Ansiform lobule" +1056 255 252 145 1 1 1 "Crus 1" +10677 255 252 145 1 1 1 "Crus 1, molecular layer" +10676 255 252 145 1 1 1 "Crus 1, Purkinje layer" +10675 236 231 84 1 1 1 "Crus 1, granular layer" +1064 255 252 145 1 1 1 "Crus 2" +10680 255 252 145 1 1 1 "Crus 2, molecular layer" +10679 255 252 145 1 1 1 "Crus 2, Purkinje layer" +10678 236 231 84 1 1 1 "Crus 2, granular layer" +1025 255 252 145 1 1 1 "Paramedian lobule" +10683 255 252 145 1 1 1 "Paramedian lobule, molecular layer" +10682 255 252 145 1 1 1 "Paramedian lobule, Purkinje layer" +10681 236 231 84 1 1 1 "Paramedian lobule, granular layer" +1033 255 252 145 1 1 1 "Copula pyramidis" +10686 255 252 145 1 1 1 "Copula pyramidis, molecular layer" +10685 255 252 145 1 1 1 "Copula pyramidis, Purkinje layer" +10684 236 231 84 1 1 1 "Copula pyramidis, granular layer" +1041 255 252 145 1 1 1 "Paraflocculus" +10689 255 252 145 1 1 1 "Paraflocculus, molecular layer" +10688 255 252 145 1 1 1 "Paraflocculus, Purkinje layer" +10687 236 231 84 1 1 1 "Paraflocculus, granular layer" +1049 255 252 145 1 1 1 "Flocculus" +10692 255 252 145 1 1 1 "Flocculus, molecular layer" +10691 255 252 145 1 1 1 "Flocculus, Purkinje layer" +10690 236 231 84 1 1 1 "Flocculus, granular layer" +519 240 240 128 1 1 1 "Cerebellar nuclei" +989 255 253 188 1 1 1 "Fastigial nucleus" +91 255 253 188 1 1 1 "Interposed nucleus" +846 255 253 188 1 1 1 "Dentate nucleus" +589508455 255 253 188 1 1 1 "Vestibulocerebellar nucleus" +1009 204 204 204 1 1 1 "fiber tracts" +967 204 204 204 1 1 1 "cranial nerves" +885 204 204 204 1 1 1 "terminal nerve" +949 204 204 204 1 1 1 "vomeronasal nerve" +840 204 204 204 1 1 1 "olfactory nerve" +1016 204 204 204 1 1 1 "olfactory nerve layer of main olfactory bulb" +21 204 204 204 1 1 1 "lateral olfactory tract, general" +665 204 204 204 1 1 1 "lateral olfactory tract, body" +538 204 204 204 1 1 1 "dorsal limb" +459 204 204 204 1 1 1 "accessory olfactory tract" +900 204 204 204 1 1 1 "anterior commissure, olfactory limb" +848 204 204 204 1 1 1 "optic nerve" +876 204 204 204 1 1 1 "accessory optic tract" +916 204 204 204 1 1 1 "brachium of the superior colliculus" +336 204 204 204 1 1 1 "superior colliculus commissure" +117 204 204 204 1 1 1 "optic chiasm" +125 204 204 204 1 1 1 "optic tract" +357 204 204 204 1 1 1 "tectothalamic pathway" +832 204 204 204 1 1 1 "oculomotor nerve" +62 204 204 204 1 1 1 "medial longitudinal fascicle" +158 204 204 204 1 1 1 "posterior commissure" +911 204 204 204 1 1 1 "trochlear nerve" +384 204 204 204 1 1 1 "trochlear nerve decussation" +710 204 204 204 1 1 1 "abducens nerve" +901 204 204 204 1 1 1 "trigeminal nerve" +93 204 204 204 1 1 1 "motor root of the trigeminal nerve" +229 204 204 204 1 1 1 "sensory root of the trigeminal nerve" +705 204 204 204 1 1 1 "midbrain tract of the trigeminal nerve" +794 204 204 204 1 1 1 "spinal tract of the trigeminal nerve" +798 204 204 204 1 1 1 "facial nerve" +1131 204 204 204 1 1 1 "intermediate nerve" +1116 204 204 204 1 1 1 "genu of the facial nerve" +933 204 204 204 1 1 1 "vestibulocochlear nerve" +1076 204 204 204 1 1 1 "efferent cochleovestibular bundle" +413 204 204 204 1 1 1 "vestibular nerve" +948 204 204 204 1 1 1 "cochlear nerve" +841 204 204 204 1 1 1 "trapezoid body" +641 204 204 204 1 1 1 "intermediate acoustic stria" +506 204 204 204 1 1 1 "dorsal acoustic stria" +658 204 204 204 1 1 1 "lateral lemniscus" +633 204 204 204 1 1 1 "inferior colliculus commissure" +482 204 204 204 1 1 1 "brachium of the inferior colliculus" +808 204 204 204 1 1 1 "glossopharyngeal nerve" +917 204 204 204 1 1 1 "vagus nerve" +237 204 204 204 1 1 1 "solitary tract" +717 204 204 204 1 1 1 "accessory spinal nerve" +813 204 204 204 1 1 1 "hypoglossal nerve" +925 204 204 204 1 1 1 "ventral roots" +792 204 204 204 1 1 1 "dorsal roots" +932 204 204 204 1 1 1 "cervicothalamic tract" +570 204 204 204 1 1 1 "dorsolateral fascicle" +522 204 204 204 1 1 1 "dorsal commissure of the spinal cord" +858 204 204 204 1 1 1 "ventral commissure of the spinal cord" +586 204 204 204 1 1 1 "fasciculus proprius" +514 204 204 204 1 1 1 "dorsal column" +380 204 204 204 1 1 1 "cuneate fascicle" +388 204 204 204 1 1 1 "gracile fascicle" +396 204 204 204 1 1 1 "internal arcuate fibers" +697 204 204 204 1 1 1 "medial lemniscus" +871 204 204 204 1 1 1 "spinothalamic tract" +29 204 204 204 1 1 1 "lateral spinothalamic tract" +389 204 204 204 1 1 1 "ventral spinothalamic tract" +245 204 204 204 1 1 1 "spinocervical tract" +261 204 204 204 1 1 1 "spino-olivary pathway" +270 204 204 204 1 1 1 "spinoreticular pathway" +293 204 204 204 1 1 1 "spinovestibular pathway" +277 204 204 204 1 1 1 "spinotectal pathway" +253 204 204 204 1 1 1 "spinohypothalamic pathway" +285 204 204 204 1 1 1 "spinotelenchephalic pathway" +627 204 204 204 1 1 1 "hypothalamohypophysial tract" +960 204 204 204 1 1 1 "cerebellum related fiber tracts" +744 204 204 204 1 1 1 "cerebellar commissure" +752 204 204 204 1 1 1 "cerebellar peduncles" +326 204 204 204 1 1 1 "superior cerebelar peduncles" +812 204 204 204 1 1 1 "superior cerebellar peduncle decussation" +85 204 204 204 1 1 1 "spinocerebellar tract" +850 204 204 204 1 1 1 "uncinate fascicle" +866 204 204 204 1 1 1 "ventral spinocerebellar tract" +78 204 204 204 1 1 1 "middle cerebellar peduncle" +1123 204 204 204 1 1 1 "inferior cerebellar peduncle" +553 204 204 204 1 1 1 "dorsal spinocerebellar tract" +499 204 204 204 1 1 1 "cuneocerebellar tract" +650 204 204 204 1 1 1 "juxtarestiform body" +490 204 204 204 1 1 1 "bulbocerebellar tract" +404 204 204 204 1 1 1 "olivocerebellar tract" +410 204 204 204 1 1 1 "reticulocerebellar tract" +373 204 204 204 1 1 1 "trigeminocerebellar tract" +728 204 204 204 1 1 1 "arbor vitae" +484682512 204 204 204 1 1 1 "supra-callosal cerebral white matter" +983 204 204 204 1 1 1 "lateral forebrain bundle system" +776 204 204 204 1 1 1 "corpus callosum" +956 204 204 204 1 1 1 "corpus callosum, anterior forceps" +579 204 204 204 1 1 1 "external capsule" +964 204 204 204 1 1 1 "corpus callosum, extreme capsule" +1108 204 204 204 1 1 1 "genu of corpus callosum" +971 204 204 204 1 1 1 "corpus callosum, posterior forceps" +979 204 204 204 1 1 1 "corpus callosum, rostrum" +484682516 204 204 204 1 1 1 "corpus callosum, body" +986 204 204 204 1 1 1 "corpus callosum, splenium" +784 204 204 204 1 1 1 "corticospinal tract" +6 204 204 204 1 1 1 "internal capsule" +924 204 204 204 1 1 1 "cerebal peduncle" +1036 204 204 204 1 1 1 "corticotectal tract" +1012 204 204 204 1 1 1 "corticorubral tract" +1003 204 204 204 1 1 1 "corticopontine tract" +994 204 204 204 1 1 1 "corticobulbar tract" +190 204 204 204 1 1 1 "pyramid" +198 204 204 204 1 1 1 "pyramidal decussation" +1019 204 204 204 1 1 1 "corticospinal tract, crossed" +1028 204 204 204 1 1 1 "corticospinal tract, uncrossed" +896 204 204 204 1 1 1 "thalamus related" +1092 204 204 204 1 1 1 "external medullary lamina of the thalamus" +14 204 204 204 1 1 1 "internal medullary lamina of the thalamus" +86 204 204 204 1 1 1 "middle thalamic commissure" +365 204 204 204 1 1 1 "thalamic peduncles" +484682520 204 204 204 1 1 1 "optic radiation" +484682524 204 204 204 1 1 1 "auditory radiation" +1000 204 204 204 1 1 1 "extrapyramidal fiber systems" +760 204 204 204 1 1 1 "cerebral nuclei related" +142 204 204 204 1 1 1 "pallidothalamic pathway" +102 204 204 204 1 1 1 "nigrostriatal tract" +109 204 204 204 1 1 1 "nigrothalamic fibers" +134 204 204 204 1 1 1 "pallidotegmental fascicle" +309 204 204 204 1 1 1 "striatonigral pathway" +317 204 204 204 1 1 1 "subthalamic fascicle" +877 204 204 204 1 1 1 "tectospinal pathway" +1051 204 204 204 1 1 1 "direct tectospinal pathway" +1060 204 204 204 1 1 1 "doral tegmental decussation" +1043 204 204 204 1 1 1 "crossed tectospinal pathway" +863 204 204 204 1 1 1 "rubrospinal tract" +397 204 204 204 1 1 1 "ventral tegmental decussation" +221 204 204 204 1 1 1 "rubroreticular tract" +736 204 204 204 1 1 1 "central tegmental bundle" +855 204 204 204 1 1 1 "retriculospinal tract" +205 204 204 204 1 1 1 "retriculospinal tract, lateral part" +213 204 204 204 1 1 1 "retriculospinal tract, medial part" +941 204 204 204 1 1 1 "vestibulospinal pathway" +991 204 204 204 1 1 1 "medial forebrain bundle system" +768 204 204 204 1 1 1 "cerebrum related" +884 204 204 204 1 1 1 "amygdalar capsule" +892 204 204 204 1 1 1 "ansa peduncularis" +908 204 204 204 1 1 1 "anterior commissure, temporal limb" +940 204 204 204 1 1 1 "cingulum bundle" +1099 204 204 204 1 1 1 "fornix system" +466 204 204 204 1 1 1 "alveus" +530 204 204 204 1 1 1 "dorsal fornix" +603 204 204 204 1 1 1 "fimbria" +745 204 204 204 1 1 1 "precommissural fornix, general" +420 204 204 204 1 1 1 "precommissural fornix diagonal band" +737 204 204 204 1 1 1 "postcommissural fornix" +428 204 204 204 1 1 1 "medial corticohypothalamic tract" +436 204 204 204 1 1 1 "columns of the fornix" +618 204 204 204 1 1 1 "hippocampal commissures" +443 204 204 204 1 1 1 "dorsal hippocampal commissure" +449 204 204 204 1 1 1 "ventral hippocampal commissure" +713 204 204 204 1 1 1 "perforant path" +474 204 204 204 1 1 1 "angular path" +37 204 204 204 1 1 1 "longitudinal association bundle" +301 204 204 204 1 1 1 "stria terminalis" +484682528 204 204 204 1 1 1 "commissural branch of stria terminalis" +824 204 204 204 1 1 1 "hypothalamus related" +54 204 204 204 1 1 1 "medial forebrain bundle" +405 204 204 204 1 1 1 "ventrolateral hypothalamic tract" +174 204 204 204 1 1 1 "preoptic commissure" +349 204 204 204 1 1 1 "supraoptic commissures" +817 204 204 204 1 1 1 "supraoptic commissures, anterior" +825 204 204 204 1 1 1 "supraoptic commissures, dorsal" +833 204 204 204 1 1 1 "supraoptic commissures, ventral" +166 204 204 204 1 1 1 "premammillary commissure" +341 204 204 204 1 1 1 "supramammillary decussation" +182 204 204 204 1 1 1 "propriohypothalamic pathways" +762 204 204 204 1 1 1 "propriohypothalamic pathways, dorsal" +770 204 204 204 1 1 1 "propriohypothalamic pathways, lateral" +779 204 204 204 1 1 1 "propriohypothalamic pathways, medial" +787 204 204 204 1 1 1 "propriohypothalamic pathways, ventral" +150 204 204 204 1 1 1 "periventricular bundle of the hypothalamus" +46 204 204 204 1 1 1 "mammillary related" +753 204 204 204 1 1 1 "principal mammillary tract" +690 204 204 204 1 1 1 "mammillothalamic tract" +681 204 204 204 1 1 1 "mammillotegmental tract" +673 204 204 204 1 1 1 "mammillary peduncle" +1068 204 204 204 1 1 1 "dorsal thalamus related" +722 204 204 204 1 1 1 "periventricular bundle of the thalamus" +1083 204 204 204 1 1 1 "epithalamus related" +802 204 204 204 1 1 1 "stria medullaris" +595 204 204 204 1 1 1 "fasciculus retroflexus" +611 204 204 204 1 1 1 "habenular commissure" +730 204 204 204 1 1 1 "pineal stalk" +70 204 204 204 1 1 1 "midbrain related" +547 204 204 204 1 1 1 "dorsal longitudinal fascicle" +563 204 204 204 1 1 1 "dorsal tegmental tract" +73 170 170 170 1 1 1 "ventricular systems" +81 170 170 170 1 1 1 "lateral ventricle" +89 170 170 170 1 1 1 "rhinocele" +98 170 170 170 1 1 1 "subependymal zone" +108 170 170 170 1 1 1 "choroid plexus" +116 170 170 170 1 1 1 "choroid fissure" +124 170 170 170 1 1 1 "interventricular foramen" +129 170 170 170 1 1 1 "third ventricle" +140 170 170 170 1 1 1 "cerebral aqueduct" +145 170 170 170 1 1 1 "fourth ventricle" +153 170 170 170 1 1 1 "lateral recess" +164 170 170 170 1 1 1 "central canal, spinal cord/medulla" +1024 170 170 170 1 1 1 "grooves" +1032 170 170 170 1 1 1 "grooves of the cerebral cortex" +1055 170 170 170 1 1 1 "endorhinal groove" +1063 170 170 170 1 1 1 "hippocampal fissure" +1071 170 170 170 1 1 1 "rhinal fissure" +1078 170 170 170 1 1 1 "rhinal incisure" +1040 170 170 170 1 1 1 "grooves of the cerebellar cortex" +1087 170 170 170 1 1 1 "precentral fissure" +1095 170 170 170 1 1 1 "preculminate fissure" +1103 170 170 170 1 1 1 "primary fissure" +1112 170 170 170 1 1 1 "posterior superior fissure" +1119 170 170 170 1 1 1 "prepyramidal fissure" +3 170 170 170 1 1 1 "secondary fissure" +11 170 170 170 1 1 1 "posterolateral fissure" +18 170 170 170 1 1 1 "nodular fissure" +25 170 170 170 1 1 1 "simple fissure" +34 170 170 170 1 1 1 "intercrural fissure" +43 170 170 170 1 1 1 "ansoparamedian fissure" +49 170 170 170 1 1 1 "intraparafloccular fissure" +57 170 170 170 1 1 1 "paramedian sulcus" +65 170 170 170 1 1 1 "parafloccular sulcus" +624 170 170 170 1 1 1 "Interpeduncular fossa" +304325711 127 46 126 1 1 1 "retina" diff --git a/annotation_volumes/WHS_Atlas_Rat_Brain_v2.label b/annotation_volumes/WHS_Atlas_Rat_Brain_v2.label new file mode 100644 index 0000000000000000000000000000000000000000..effc072f8a226443eb2461ea5ff53f8d9ad8efdf --- /dev/null +++ b/annotation_volumes/WHS_Atlas_Rat_Brain_v2.label @@ -0,0 +1,95 @@ +################################################ +# ITK-SnAP Label Description File +# File format: +# IDX -R- -G- -B- -A-- VIS MSH LABEL +# Fields: +# IDX: Zero-based index +# -R-: Red color component (0..255) +# -G-: Green color component (0..255) +# -B-: Blue color component (0..255) +# -A-: Label transparency (0.00 .. 1.00) +# VIS: Label visibility (0 or 1) +# IDX: Label mesh visibility (0 or 1) +# LABEL: Label description +################################################ + 0 0 0 0 0 0 0 "Clear Label" + 1 255 52 39 1 1 0 "descending corticofugal pathways" + 2 255 186 0 1 1 0 "substantia nigra" + 3 0 0 255 1 1 0 "subthalamic nucleus" + 4 255 255 0 1 1 0 "molecular layer of the cerebellum" + 5 0 255 255 1 1 0 "granule cell level of the cerebellum" + 6 255 0 255 1 1 0 "alveus of the hippocampus" + 7 52 255 13 1 1 0 "inferior cerebellar peduncle" + 10 29 104 235 1 1 0 "cingulate cortex, area 2" + 30 129 79 255 1 1 0 "striatum" + 31 255 145 186 1 1 0 "globus pallidus" + 32 26 231 255 1 1 0 "entopeduncular nucleus" + 33 2 44 255 1 1 0 "ventricular system" + 34 212 255 0 1 1 0 "medial lemniscus" + 35 0 176 63 1 1 0 "facial nerve" + 36 124 252 0 1 1 0 "anterior commissure, anterior part" + 37 255 186 0 1 1 0 "anterior commissure, posterior part" + 38 174 0 232 1 1 0 "ventral hippocampal commissure" + 39 0 100 0 1 1 0 "thalamus" + 40 255 8 0 1 1 0 "septal region" + 41 48 218 0 1 1 0 "optic nerve" + 42 38 126 255 1 1 0 "optic tract and optic chiasm" + 43 218 170 62 1 1 0 "pineal gland" + 44 0 165 21 1 1 0 "inner ear" + 45 134 255 90 0.68 1 0 "spinal cord" + 46 33 230 255 1 1 0 "commissure of the superior colliculus" + 47 153 83 255 1 1 0 "brainstem" + 48 226 120 161 1 1 0 "hypothalamic region" + 49 238 47 44 1 1 0 "inferior colliculus" + 50 86 0 221 1 1 0 "superficial gray layer of the superior colliculus" + 51 7 255 89 1 1 0 "periaqueductal gray" + 52 21 192 255 1 1 0 "fornix" + 53 238 186 0 1 1 0 "mammillothalamic tract" + 54 173 255 47 1 1 0 "commissural stria terminalis" + 55 225 151 15 1 1 0 "deeper layers of the superior colliculus" + 56 235 87 255 1 1 0 "periventricular gray" + 57 250 244 247 1 1 0 "genu of the facial nerve" + 58 0 215 11 1 1 0 "pontine nuclei" + 59 0 255 29 1 1 0 "fimbria of the hippocampus" + 60 244 67 69 1 1 0 "fasciculus retroflexus" + 61 255 252 0 1 1 0 "stria medullaris of the thalamus" + 62 238 117 51 1 1 0 "stria terminalis" + 63 255 0 218 1 1 0 "posterior commissure" + 64 15 109 230 1 1 0 "glomerular layer of the accessory olfactory bulb" + 65 255 227 0 1 1 0 "glomerular layer of the olfactory bulb" + 66 255 135 0 1 1 0 "olfactory bulb" + 67 255 110 0 1 1 0 "corpus callosum and associated subcortical white matter" + 68 188 32 173 1 1 0 "brachium of the superior colliculus" + 69 147 255 39 1 1 0 "commissure of the inferior colliculus" + 70 39 244 253 1 1 0 "central canal" + 71 63 192 255 1 1 0 "interpeduncular nucleus" + 72 179 28 53 1 1 0 "ascending fibers of the facial nerve" + 73 255 79 206 1 1 0 "anterior commissure" + 74 0 246 14 1 1 0 "inferior olive" + 75 91 241 255 1 1 0 "spinal trigeminal nuclus" + 76 250 128 114 1 1 0 "spinal trigeminal tract" + 77 206 211 7 1 1 0 "frontal associiation cortex" + 78 134 204 76 1 1 0 "middle cerebellar peduncle" + 79 128 170 255 1 1 0 "transverse fibers of the pons" + 80 69 235 202 1 1 0 "habenular commissure" + 81 222 7 237 1 1 0 "nucleus of the stria medullaris" + 82 225 240 13 1 1 0 "basal forebrain region" + 83 250 170 64 1 1 0 "supraoptic decussation" + 84 65 150 255 1 1 0 "medial lemniscus decussation" + 85 114 9 212 1 1 0 "pyramidal decussation" + 92 3 193 45 1 1 0 "neocortex" + 93 0 8 182 1 1 0 "bed nucleus of the stria terminalis" + 94 255 87 30 1 1 0 "pretectal region" + 95 165 131 107 1 1 1 "cornu ammonis 3" + 96 91 45 10 1 1 1 "dentate gyrus" + 97 255 255 0 1 1 1 "cornu ammonis 2" + 98 217 104 13 1 1 1 "cornu ammonis 1" + 99 255 82 82 1 1 1 "fasciola cinereum" + 100 255 192 0 1 1 1 "subiculum" + 108 40 112 130 1 1 1 "postrhinal cortex" + 109 80 123 175 1 1 1 "presubiculum" + 110 23 54 96 1 1 1 "parasubiculum" + 112 205 51 255 1 1 1 "perirhinal area 35" + 113 112 48 160 1 1 1 "perirhinal area 36" + 114 12 92 8 1 1 1 "entorhinal cortex" + 115 221 166 36 1 1 1 "lateral entorhinal cortex" diff --git a/annotation_volumes/WHS_Atlas_Rat_Brain_v3.label b/annotation_volumes/WHS_Atlas_Rat_Brain_v3.label new file mode 100644 index 0000000000000000000000000000000000000000..61aef2497c8b9e6c5fd47fca6c679bc25fc6e176 --- /dev/null +++ b/annotation_volumes/WHS_Atlas_Rat_Brain_v3.label @@ -0,0 +1,134 @@ +################################################ +# ITK-SnAP Label Description File +# File format: +# IDX -R- -G- -B- -A-- VIS MSH LABEL +# Fields: +# IDX: Zero-based index +# -R-: Red color component (0..255) +# -G-: Green color component (0..255) +# -B-: Blue color component (0..255) +# -A-: Label transparency (0.00 .. 1.00) +# VIS: Label visibility (0 or 1) +# IDX: Label mesh visibility (0 or 1) +# LABEL: Label description +################################################ + 0 0 0 0 0 0 0 "Clear Label" + 1 255 52 39 1 1 0 "descending corticofugal pathways" + 2 255 186 0 1 1 0 "substantia nigra" + 3 0 0 255 1 1 0 "subthalamic nucleus" + 4 255 255 0 1 1 0 "molecular layer of the cerebellum" + 5 0 255 255 1 1 0 "granule cell level of the cerebellum" + 6 255 0 255 1 1 0 "alveus of the hippocampus" + 7 52 255 13 1 1 0 "inferior cerebellar peduncle" + 10 29 104 235 1 1 0 "cingulate cortex, area 2" + 30 129 79 255 1 1 0 "striatum" + 31 255 145 186 1 1 0 "globus pallidus" + 32 26 231 255 1 1 0 "entopeduncular nucleus" + 33 2 44 255 1 1 0 "ventricular system" + 34 212 255 0 1 1 0 "medial lemniscus" + 35 255 25 240 1 1 0 "facial nerve" + 36 124 252 0 1 1 0 "anterior commissure, anterior part" + 37 255 186 0 1 1 0 "anterior commissure, posterior part" + 38 174 0 232 1 1 0 "ventral hippocampal commissure" + 39 0 100 0 1 1 0 "thalamus" + 40 255 8 0 1 1 0 "septal region" + 41 48 218 0 1 1 0 "optic nerve" + 42 38 126 255 1 1 0 "optic tract and optic chiasm" + 43 218 170 62 1 1 0 "pineal gland" + 44 255 255 255 1 1 0 "inner ear, erroneous" + 45 134 255 90 1 1 0 "spinal cord" + 46 33 230 255 1 1 0 "commissure of the superior colliculus" + 47 153 83 255 1 1 0 "brainstem" + 48 226 120 161 1 1 0 "hypothalamic region" + 50 86 0 221 1 1 0 "superficial gray layer of the superior colliculus" + 51 7 255 89 1 1 0 "periaqueductal gray" + 52 21 192 255 1 1 0 "fornix" + 53 238 186 0 1 1 0 "mammillothalamic tract" + 54 173 255 47 1 1 0 "commissural stria terminalis" + 55 225 151 15 1 1 0 "deeper layers of the superior colliculus" + 56 235 87 255 1 1 0 "periventricular gray" + 57 250 244 247 1 1 0 "genu of the facial nerve" + 58 0 215 11 1 1 0 "pontine nuclei" + 59 0 255 29 1 1 0 "fimbria of the hippocampus" + 60 244 67 69 1 1 0 "fasciculus retroflexus" + 61 0 255 0 1 1 0 "stria medullaris of the thalamus" + 62 238 117 51 1 1 0 "stria terminalis" + 63 255 0 218 1 1 0 "posterior commissure" + 64 15 109 230 1 1 0 "glomerular layer of the accessory olfactory bulb" + 65 255 227 0 1 1 0 "glomerular layer of the olfactory bulb" + 66 255 135 0 1 1 0 "olfactory bulb" + 67 255 110 0 1 1 0 "corpus callosum and associated subcortical white matter" + 68 188 32 173 1 1 0 "brachium of the superior colliculus" + 69 255 42 39 1 1 1 "inferior colliculus, commissure" + 70 39 244 253 1 1 0 "central canal" + 71 63 192 255 1 1 0 "interpeduncular nucleus" + 72 179 28 53 1 1 0 "ascending fibers of the facial nerve" + 73 255 79 206 1 1 0 "anterior commissure" + 74 0 246 14 1 1 0 "inferior olive" + 75 91 241 255 1 1 0 "spinal trigeminal nucleus" + 76 250 128 114 1 1 0 "spinal trigeminal tract" + 77 206 211 7 1 1 0 "frontal association cortex" + 78 134 204 76 1 1 0 "middle cerebellar peduncle" + 79 128 170 255 1 1 0 "transverse fibers of the pons" + 80 69 235 202 1 1 0 "habenular commissure" + 81 222 7 237 1 1 0 "nucleus of the stria medullaris" + 82 225 240 13 1 1 0 "basal forebrain region" + 83 250 170 64 1 1 0 "supraoptic decussation" + 84 65 150 255 1 1 0 "medial lemniscus decussation" + 85 114 9 212 1 1 0 "pyramidal decussation" + 92 3 193 45 1 1 0 "neocortex" + 93 0 8 182 1 1 0 "bed nucleus of the stria terminalis" + 94 255 87 30 1 1 0 "pretectal region" + 95 165 131 107 1 1 0 "cornu ammonis 3" + 96 91 45 10 1 1 0 "dentate gyrus" + 97 255 255 0 1 1 0 "cornu ammonis 2" + 98 217 104 13 1 1 0 "cornu ammonis 1" + 99 255 0 0 1 1 0 "fasciola cinereum" + 100 255 192 0 1 1 0 "subiculum" + 108 40 112 130 1 1 0 "postrhinal cortex" + 109 80 123 175 1 1 0 "presubiculum" + 110 23 54 96 1 1 0 "parasubiculum" + 112 205 51 255 1 1 0 "perirhinal area 35" + 113 112 48 160 1 1 0 "perirhinal area 36" + 114 122 187 51 1 1 0 "entorhinal cortex" + 115 90 111 47 1 1 0 "lateral entorhinal cortex" + 119 0 144 55 1 1 1 "vestibular apparatus" + 120 0 255 29 1 1 1 "cochlea" + 121 253 148 0 1 1 1 "cochlear nerve" + 122 253 50 0 1 1 1 "vestibular nerve" + 123 0 12 255 1 1 1 "ventral cochlear nucleus, granule cell layer" + 125 52 29 144 1 1 0 "4th ventricle" + 126 92 156 211 1 1 1 "dorsal cochlear nucleus, molecular layer" + 127 0 80 156 1 1 1 "dorsal cochlear nucleus, fusiform and granule layer" + 128 197 238 255 1 1 1 "dorsal cochlear nucleus, deep core" + 129 255 217 0 1 1 1 "acoustic striae" + 130 213 255 0 1 1 1 "trapezoid body" + 131 0 255 81 1 1 1 "nucleus of the trapezoid body" + 132 0 238 255 1 1 1 "superior paraolivary nucleus" + 133 219 239 61 1 1 1 "medial superior olive" + 134 35 76 190 1 1 1 "lateral superior olive" + 135 1 153 21 1 1 1 "superior periolivary region" + 136 0 174 255 1 1 1 "ventral periolivary nuclei" + 137 255 0 115 1 1 1 "lateral lemniscus, ventral nucleus" + 138 171 16 91 1 1 1 "lateral lemniscus, intermediate nucleus" + 139 108 18 91 1 1 1 "lateral lemniscus, dorsal nucleus" + 140 255 29 0 1 1 1 "lateral lemniscus, commissure" + 141 255 166 0 1 1 1 "lateral lemniscus" + 142 206 255 142 1 1 1 "inferior colliculus, dorsal cortex" + 143 0 238 255 1 1 1 "inferior colliculus, central nucleus" + 145 48 136 203 1 1 1 "inferior colliculus, external cortex" + 146 176 58 72 1 1 1 "inferior colliculus, brachium" + 147 10 244 217 1 1 1 "medial geniculate body, medial division" + 148 239 163 0 1 1 1 "medial geniculate body, dorsal division" + 149 131 58 31 1 1 1 "medial geniculate body, ventral division" + 150 255 47 242 1 1 1 "medial geniculate body, marginal zone" + 151 255 215 0 1 1 1 "primary auditory cortex" + 152 240 255 255 1 1 1 "secondary auditory cortex, dorsal area" + 153 216 191 216 1 1 1 "secondary auditory cortex, ventral area" + 157 244 156 255 1 1 1 "auditory radiation" + 158 34 152 255 1 1 1 "ventral cochlear nucleus, anterior part" + 159 0 230 207 1 1 1 "ventral cochlear nucleus, posterior part" + 160 0 255 106 1 1 1 "ventral cochlear nucleus, cap area" + 162 185 255 233 1 1 1 "spiral ganglion" + 163 99 205 0 1 1 1 "nucleus sagulum" + 164 110 0 255 1 1 1 "reticular thalamic nucleus, auditory segment" \ No newline at end of file diff --git a/annotation_volumes/WHS_SD_rat_atlas_v4.label b/annotation_volumes/WHS_SD_rat_atlas_v4.label new file mode 100644 index 0000000000000000000000000000000000000000..0aee42b2fc47d7759e73e23e574015048ed65d49 --- /dev/null +++ b/annotation_volumes/WHS_SD_rat_atlas_v4.label @@ -0,0 +1,237 @@ +################################################ +# ITK-SnAP Label Description File +# File format: +# IDX -R- -G- -B- -A-- VIS MSH LABEL +# Fields: +# IDX: Zero-based index +# -R-: Red color component (0..255) +# -G-: Green color component (0..255) +# -B-: Blue color component (0..255) +# -A-: Label transparency (0.00 .. 1.00) +# VIS: Label visibility (0 or 1) +# IDX: Label mesh visibility (0 or 1) +# LABEL: Label description +################################################ + 0 0 0 0 0 0 0 "Clear Label" + 1 255 52 39 1 1 0 "corticofugal tract and corona radiata" + 3 0 0 255 1 1 0 "Subthalamic nucleus" + 4 255 255 1 1 1 0 "Molecular cell layer of the cerebellum" + 5 0 255 255 1 1 0 "Cerebellum, unspecified" + 6 255 0 255 1 1 0 "alveus of the hippocampus" + 7 52 255 13 1 1 0 "inferior cerebellar peduncle" + 10 29 104 235 1 1 0 "Cingulate area 2" + 32 26 231 255 1 1 0 "Entopeduncular nucleus" + 33 2 44 255 1 1 0 "Ventricular system, unspecified" + 34 212 255 0 1 1 0 "medial lemniscus, unspecified" + 35 255 25 240 1 1 0 "facial nerve, unspecified" + 36 124 252 0 1 1 0 "anterior commissure, anterior limb" + 37 255 186 0 1 1 0 "anterior commissure, posterior limb" + 38 174 0 232 1 1 0 "ventral hippocampal commissure" + 40 255 8 0 1 1 0 "Septal region" + 41 48 218 0 1 1 0 "optic nerve" + 42 38 126 255 1 1 0 "optic tract and optic chiasm" + 43 218 170 62 1 1 0 "Pineal gland" + 45 134 255 90 1 1 0 "Spinal cord" + 46 33 230 255 1 1 0 "commissure of the superior colliculus" + 47 153 83 255 1 1 0 "Brainstem, unspecified" + 48 226 120 161 1 1 0 "Hypothalamic region, unspecified" + 50 86 0 221 1 1 0 "Superficial gray layer of the superior colliculus" + 51 7 255 89 1 1 0 "Periaqueductal gray" + 52 21 192 255 1 1 0 "fornix" + 53 238 186 0 1 1 0 "mammillotegmental tract" + 54 173 255 47 1 1 0 "commissural stria terminalis" + 55 225 151 15 1 1 0 "Deeper layers of the superior colliculus" + 56 235 87 255 1 1 0 "Periventricular gray" + 57 250 244 247 1 1 0 "genu of the facial nerve" + 58 0 215 11 1 1 0 "Pontine nuclei" + 59 0 255 29 1 1 0 "fimbria of the hippocampus" + 60 244 67 69 1 1 0 "fasciculus retroflexus" + 61 0 255 0 1 1 0 "stria medullaris thalami" + 62 238 117 51 1 1 0 "stria terminalis" + 63 255 0 218 1 1 0 "posterior commissure" + 64 15 109 230 1 1 0 "Glomerular layer of the accessory olfactory bulb" + 65 255 227 0 1 1 0 "Glomerular layer of the olfactory bulb" + 66 255 135 0 1 1 0 "Olfactory bulb, unspecified" + 67 255 110 0 1 1 0 "corpus callosum and associated subcortical white matter" + 68 188 32 173 1 1 0 "brachium of the superior colliculus" + 69 255 42 39 1 1 0 "inferior colliculus, commissure" + 70 39 244 253 1 1 0 "Central canal" + 71 63 192 255 1 1 0 "Interpeduncular nucleus" + 72 179 28 53 1 1 0 "ascending fibers of the facial nerve" + 73 255 79 206 1 1 0 "anterior commissure, intrabulbar part" + 74 0 246 14 1 1 0 "Inferior olive" + 75 91 241 255 1 1 0 "Spinal trigeminal nucleus" + 76 250 128 114 1 1 0 "spinal trigeminal tract" + 77 206 211 7 1 1 0 "Frontal association cortex" + 78 134 204 76 1 1 0 "middle cerebellar peduncle" + 79 128 170 255 1 1 0 "transverse fibers of the pons" + 80 69 235 202 1 1 0 "habenular commissure" + 81 222 7 237 1 1 0 "Nucleus of the stria medullaris" + 82 225 240 13 1 1 0 "Basal forebrain region, unspecified" + 83 250 170 64 1 1 0 "supraoptic decussation" + 84 65 150 255 1 1 0 "medial lemniscus decussation" + 85 114 9 212 1 1 0 "pyramidal decussation" + 93 0 8 182 1 1 0 "Bed nucleus of the stria terminalis" + 94 255 87 30 1 1 0 "Pretectal region" + 95 165 131 107 1 1 0 "Cornu ammonis 3" + 96 91 45 10 1 1 0 "Dentate gyrus" + 97 255 255 0 1 1 0 "Cornu ammonis 2" + 98 217 104 13 1 1 0 "Cornu ammonis 1" + 99 255 0 0 1 1 0 "Fasciola cinereum" + 100 255 192 0 1 1 0 "Subiculum" + 108 40 112 130 1 1 0 "Postrhinal cortex" + 109 80 123 175 1 1 0 "Presubiculum" + 110 23 54 96 1 1 0 "Parasubiculum" + 112 205 51 255 1 1 0 "Perirhinal area 35" + 113 112 48 160 1 1 0 "Perirhinal area 36" + 114 122 187 51 1 1 0 "Medial entorhinal cortex" + 115 90 111 47 1 1 0 "Lateral entorhinal cortex" + 119 0 144 55 1 1 0 "Vestibular apparatus" + 120 0 255 28 1 1 0 "Cochlea" + 121 253 148 0 1 1 0 "Cochlear nerve" + 122 253 50 0 1 1 0 "Vestibular nerve" + 123 0 12 255 1 1 0 "Ventral cochlear nucleus, granule cell layer" + 125 52 29 144 1 1 0 "4th ventricle" + 126 92 156 211 1 1 0 "Dorsal cochlear nucleus, molecular layer" + 127 0 80 156 1 1 0 "Dorsal cochlear nucleus, fusiform and granule layer" + 128 197 238 255 1 1 0 "Dorsal cochlear nucleus, deep core" + 129 255 217 0 1 1 0 "acoustic striae" + 130 213 255 0 1 1 0 "trapezoid body" + 131 0 255 81 1 1 0 "Nucleus of the trapezoid body" + 132 0 238 255 1 1 0 "Superior paraolivary nucleus" + 133 219 239 61 1 1 0 "Medial superior olive" + 134 35 76 190 1 1 0 "Lateral superior olive" + 135 1 153 21 1 1 0 "Superior periolivary region" + 136 0 174 255 1 1 0 "Ventral periolivary nuclei" + 137 255 0 115 1 1 0 "Lateral lemniscus, ventral nucleus" + 138 171 16 91 1 1 0 "Lateral lemniscus, intermediate nucleus" + 139 108 18 91 1 1 0 "Lateral lemniscus, dorsal nucleus" + 140 255 29 0 1 1 0 "lateral lemniscus, commissure" + 141 255 166 0 1 1 0 "lateral lemniscus, unspecified" + 142 206 255 142 1 1 0 "Inferior colliculus, dorsal cortex" + 143 0 238 254 1 1 0 "Inferior colliculus, central nucleus" + 145 48 136 203 1 1 0 "Inferior colliculus, external cortex" + 146 176 58 72 1 1 0 "inferior colliculus, brachium" + 150 255 47 242 1 1 0 "Medial geniculate body, marginal zone" + 151 255 215 0 1 1 0 "Primary auditory area" + 152 240 255 255 1 1 0 "Secondary auditory area, dorsal part" + 153 216 191 216 1 1 0 "Secondary auditory area, ventral part" + 157 244 156 255 1 1 0 "external medullary lamina, auditory radiation" + 158 34 152 255 1 1 0 "Ventral cochlear nucleus, anterior part" + 159 0 230 207 1 1 0 "Ventral cochlear nucleus, posterior part" + 160 0 255 106 1 1 0 "Ventral cochlear nucleus, cap area" + 162 185 255 233 1 1 0 "Spiral ganglion" + 163 99 205 0 1 1 0 "Nucleus sagulum" + 164 110 0 255 1 1 0 "Reticular (pre)thalamic nucleus, auditory segment" + 180 255 0 221 1 1 0 "lateral olfactory tract" + 181 0 204 255 1 1 0 "Piriform cortex, layer 1" + 182 0 0 254 1 1 0 "Piriform cortex, layer 2" + 183 165 120 221 1 1 0 "Piriform cortex, layer 3" + 184 230 216 250 1 1 0 "Nucleus accumbens, core" + 187 99 197 18 1 1 0 "Substantia nigra, reticular part" + 188 255 255 127 1 1 0 "Substantia nigra, compact part" + 189 0 159 159 1 1 0 "Substantia nigra, lateral part" + 192 88 47 108 1 1 0 "Nucleus accumbens, shell" + 193 0 162 255 1 1 0 "Ventral pallidum" + 195 255 85 255 1 1 0 "Globus pallidus external, medial part" + 196 127 255 212 1 1 0 "Ventral tegmental area" + 197 129 79 155 1 1 0 "Caudate putamen" + 198 200 25 200 1 1 0 "Globus pallidus external, lateral part" + 199 220 20 60 1 1 0 "Ventral striatal region, unspecified" + 200 0 217 255 1 1 0 "Reticular (pre)thalamic nucleus, unspecified" + 201 183 199 136 1 1 0 "Peripeduncular nucleus" + 204 255 25 0 1 1 0 "Pregeniculate nucleus" + 205 255 226 0 1 1 0 "Dorsal lateral geniculate nucleus" + 206 217 108 0 1 1 0 "Lateral habenular nucleus" + 207 205 0 24 1 1 0 "Medial habenular nucleus" + 208 228 112 214 1 1 0 "Posterior intralaminar nucleus" + 210 255 255 200 1 1 0 "Posterior thalamic nuclear group, triangular part" + 211 205 0 6 1 1 0 "Parataenial thalamic nucleus" + 213 131 10 121 1 1 0 "Anterodorsal thalamic nucleus" + 214 239 121 218 1 1 0 "Anteroventral thalamic nucleus, dorsomedial part" + 215 101 35 142 1 1 0 "Anteroventral thalamic nucleus, ventrolateral part" + 216 0 255 17 1 1 0 "Rhomboid thalamic nucleus" + 218 35 255 236 1 1 0 "Xiphoid thalamic nucleus" + 219 255 170 0 1 1 0 "Reuniens thalamic nucleus" + 221 0 185 126 1 1 0 "Ventromedial thalamic nucleus" + 222 130 0 217 1 1 0 "Submedius thalamic nucleus" + 223 139 93 139 1 1 0 "Angular thalamic nucleus" + 227 255 0 254 1 1 0 "Ventral posteromedial thalamic nucleus" + 228 255 123 0 1 1 0 "Laterodorsal thalamic nucleus, dorsomedial part" + 229 43 153 31 1 1 0 "Laterodorsal thalamic nucleus, ventrolateral part" + 230 255 255 2 1 1 0 "Posterior thalamic nucleus" + 231 170 170 255 1 1 0 "Ventrolateral thalamic nucleus" + 232 255 85 127 1 1 0 "Mediodorsal thalamic nucleus, lateral part" + 233 85 170 0 1 1 0 "Mediodorsal thalamic nucleus, central part" + 235 216 191 217 1 1 0 "Zona incerta, dorsal part" + 236 75 200 138 1 1 0 "Zona incerta, ventral part" + 238 194 71 79 1 1 0 "Zona incerta, A13 dopamine cells" + 239 219 143 247 1 1 0 "pretectothalamic lamina" + 240 170 255 255 1 1 0 "Mediodorsal thalamic nucleus, medial part" + 242 156 51 51 1 1 0 "Paraventricular thalamic nuclei (anterior and posterior)" + 246 240 248 255 1 1 0 "Paracentral thalamic nucleus" + 247 224 182 64 1 1 0 "Central medial thalamic nucleus" + 248 153 50 204 1 1 0 "Central lateral thalamic nucleus" + 249 170 255 0 1 1 0 "external medullary lamina, unspecified" + 254 0 85 255 1 1 0 "Anteromedial thalamic nucleus" + 255 248 117 222 1 1 0 "Interanteromedial thalamic nucleus" + 257 30 144 255 1 1 0 "Zona incerta, rostral part" + 260 160 82 45 1 1 0 "Intermediodorsal thalamic nucleus" + 266 0 255 8 1 1 0 "Ventral posterior nucleus of the thalamus, parvicellular part" + 267 255 239 213 1 1 0 "Parafascicular thalamic nucleus" + 268 0 0 205 1 1 0 "Retroreuniens thalamic nucleus" + 270 210 182 140 1 1 0 "superior cerebellar peduncle and prerubral field" + 272 0 0 128 1 1 0 "Intergeniculate leaflet" + 278 233 150 122 1 1 0 "Subparafascicular nucleus" + 280 255 250 250 1 1 0 "Fields of Forel" + 281 147 112 219 1 1 0 "Subgeniculate nucleus" + 282 131 50 128 1 1 0 "Ethmoid-Limitans nucleus" + 283 199 87 61 1 1 0 "Lateral posterior thalamic nucleus, lateral part" + 284 255 182 193 1 1 0 "Zona incerta, A11 dopamine cells" + 285 60 179 113 1 1 0 "Lateral posterior thalamic nucleus, mediorostral part" + 286 255 235 205 1 1 0 "Lateral posterior thalamic nucleus, mediocaudal part" + 287 255 228 196 1 1 0 "Zona incerta, caudal part" + 290 155 148 111 1 1 0 "intramedullary thalamic area" + 291 255 92 10 1 1 0 "internal medullary lamina" + 293 255 136 0 1 1 0 "Ventral anterior thalamic nucleus" + 294 171 86 62 1 1 0 "Ventral posterolateral thalamic nucleus" + 295 239 163 0 1 1 0 "Medial geniculate body, dorsal division" + 297 10 244 217 1 1 0 "Medial geniculate body, medial division" + 298 131 58 31 1 1 0 "Medial geniculate body, ventral division" + 299 10 244 150 1 1 0 "Medial geniculate body, suprageniculate nucleus" + 400 255 0 1 1 1 0 "Ventrolateral orbital area" + 401 255 174 201 1 1 0 "Lateral orbital area" + 402 200 191 231 1 1 0 "Ventral orbital area" + 403 63 72 204 1 1 0 "Medial orbital area" + 404 185 122 87 1 1 0 "Dorsolateral orbital area" + 405 163 73 164 1 1 0 "Prelimbic area" + 406 0 162 232 1 1 0 "Secondary motor area" + 407 136 0 21 1 1 0 "Frontal association area 3" + 408 153 217 234 1 1 0 "Primary motor area" + 409 255 201 14 1 1 0 "Agranular insular cortex, ventral area" + 410 255 127 39 1 1 0 "Agranular insular cortex dorsal area " + 411 0 128 128 1 1 0 "Cingulate area 1" + 412 153 217 200 1 1 0 "Claustrum" + 413 34 177 76 1 1 0 "Infralimbic area" + 414 255 242 0 1 1 0 "Dysgranular insular cortex" + 416 239 228 176 1 1 0 "Granular insular cortex" + 417 185 14 131 1 1 0 "Primary somatosensory area, forelimb representation" + 418 237 28 36 1 1 0 "Primary somatosensory area, dysgranular zone" + 420 255 128 192 1 1 0 "Primary somatosensory area, face representation" + 422 200 100 250 1 1 0 "Secondary somatosensory area" + 423 136 100 21 1 1 0 "Primary somatosensory area, hindlimb representation" + 424 181 230 29 1 1 0 "Agranular insular cortex, posterior area " + 425 120 177 76 1 1 0 "Primary somatosensory area, barrel field" + 427 200 73 164 1 1 0 "Retrosplenial dysgranular area" + 429 225 150 201 1 1 0 "Primary somatosensory area, trunk representation" + 430 25 100 200 1 1 0 "Retrosplenial granular area" + 432 255 240 29 1 1 0 "Parietal association cortex, lateral area" + 433 108 0 108 1 1 0 "Parietal association cortex, medial area" + 436 128 0 64 1 1 0 "Parietal association cortex, posterior area " + 442 84 52 35 1 1 0 "Primary visual area" + 443 255 100 100 1 1 0 "Secondary visual area, lateral part" + 444 0 128 0 1 1 0 "Temporal association cortex" + 448 128 0 100 1 1 0 "Secondary visual area, medial part" + 500 1 10 100 1 1 0 "Endopiriform nucleus" + 501 2 20 200 1 1 0 "Amygdaloid area, unspecified" + 502 230 184 67 1 1 0 "Nucleus of the lateral olfactory tract" diff --git a/annotation_volumes/annotation_10_2017.nrrd b/annotation_volumes/annotation_10_2017.nrrd new file mode 100644 index 0000000000000000000000000000000000000000..291cc92f01927ece18ada0ec0dd16095cc8b118c Binary files /dev/null and b/annotation_volumes/annotation_10_2017.nrrd differ diff --git a/annotation_volumes/annotation_10.nrrd b/annotation_volumes/annotation_10_2022.nrrd similarity index 100% rename from annotation_volumes/annotation_10.nrrd rename to annotation_volumes/annotation_10_2022.nrrd diff --git a/annotation_volumes/annotation_10_reoriented_2017.nrrd b/annotation_volumes/annotation_10_reoriented_2017.nrrd new file mode 100644 index 0000000000000000000000000000000000000000..03ba12119d4f681f5bd3db7e0bf74fb4f7dd636a Binary files /dev/null and b/annotation_volumes/annotation_10_reoriented_2017.nrrd differ diff --git a/annotation_volumes/annotation_10_reoriented.nrrd b/annotation_volumes/annotation_10_reoriented_2022.nrrd similarity index 100% rename from annotation_volumes/annotation_10_reoriented.nrrd rename to annotation_volumes/annotation_10_reoriented_2022.nrrd diff --git a/annotation_volumes/itksnap_label_description.txt b/annotation_volumes/itksnap_label_description_2022.txt similarity index 100% rename from annotation_volumes/itksnap_label_description.txt rename to annotation_volumes/itksnap_label_description_2022.txt diff --git a/input/input.json b/input/input.json index 479bdd3228cca9bf88c1b1becb68e60d1ed57b84..a90653b4fd5b3a0a4447932739bfd73adb99ad48 100644 --- a/input/input.json +++ b/input/input.json @@ -1,6 +1,5 @@ -{ "volume_path": "../annotation_volumes/annotation_10_reoriented.nrrd", +{ "volume_path": "../annotation_volumes/annotation_10_reoriented_2022.nrrd", "label_path": "../annotation_volumes/allen2022_colours.csv", - "allen_colours": "../annotation_volumes/allen2022_colours.csv", "segmentation_folder": "../test_data/oneSection15", "alignment_json": "../test_data/C68_nonlinear_no_markers.json", "nonlinear": true, diff --git a/junk/allen2022_colours.csv b/junk/allen2022_colours.csv new file mode 100644 index 0000000000000000000000000000000000000000..87adaff790da3a35225e5ce960a668826d6d0df9 --- /dev/null +++ b/junk/allen2022_colours.csv @@ -0,0 +1,1329 @@ +id,r,g,b,1a,1b,1c,name,allenID +1.0,97,23,22,1.0,1.0,1.0,TMv,1 +2.0,124,100,148,1.0,1.0,1.0,SSp-m6b,2 +3.0,45,110,140,1.0,1.0,1.0,sec,3 +4.0,87,181,14,1.0,1.0,1.0,IC,4 +5.0,11,248,9,1.0,1.0,1.0,int,6 +6.0,111,208,94,1.0,1.0,1.0,PSV,7 +7.0,9,47,174,1.0,1.0,1.0,grey,8 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1 1 1 "CUL4gr - 10714" +1171 209 62 113 1 1 1 "CUL4pu - 10715" +1172 94 20 232 1 1 1 "CUL4mo - 10716" +1173 160 149 180 1 1 1 "CUL5gr - 10717" +1174 222 138 233 1 1 1 "CUL5pu - 10718" +1175 50 161 113 1 1 1 "CUL5mo - 10719" +1176 113 223 61 1 1 1 "CUL4, 5gr - 10720" +1177 1 88 3 1 1 1 "CUL4, 5pu - 10721" +1178 214 33 67 1 1 1 "CUL4, 5mo - 10722" +1179 14 68 102 1 1 1 "DECgr - 10723" +1180 113 185 67 1 1 1 "DECpu - 10724" +1181 50 145 32 1 1 1 "DECmo - 10725" +1182 43 104 15 1 1 1 "FOTUgr - 10726" +1183 252 189 254 1 1 1 "FOTUpu - 10727" +1184 248 218 240 1 1 1 "FOTUmo - 10728" +1185 82 6 47 1 1 1 "PYRgr - 10729" +1186 119 25 101 1 1 1 "PYRpu - 10730" +1187 94 165 46 1 1 1 "PYRmo - 10731" +1188 126 111 97 1 1 1 "UVUgr - 10732" +1189 211 38 74 1 1 1 "UVUpu - 10733" +1190 111 30 39 1 1 1 "UVUmo - 10734" +1191 188 237 227 1 1 1 "NODgr - 10735" +1192 221 45 54 1 1 1 "NODpu - 10736" +1193 138 215 177 1 1 1 "NODmo - 10737" +1194 52 34 196 1 1 1 "SS1 - 12993" +1195 7 27 105 1 1 1 "SS2/3 - 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57 11 1 1 1 "VISli5 - 312782590" +1220 35 241 23 1 1 1 "VISli6a - 312782594" +1221 82 234 9 1 1 1 "VISli6b - 312782598" +1222 68 59 4 1 1 1 "VISrl1 - 312782604" +1223 146 68 174 1 1 1 "VISrl2/3 - 312782608" +1224 83 75 136 1 1 1 "VISrl4 - 312782612" +1225 149 186 122 1 1 1 "VISrl5 - 312782616" +1226 166 232 127 1 1 1 "VISrl6a - 312782620" +1227 131 50 39 1 1 1 "VISrl6b - 312782624" +1228 12 11 168 1 1 1 "VISpor - 312782628" +1229 53 98 188 1 1 1 "VISpor1 - 312782632" +1230 21 221 221 1 1 1 "VISpor2/3 - 312782636" +1231 95 59 211 1 1 1 "VISpor4 - 312782640" +1232 7 220 187 1 1 1 "VISpor5 - 312782644" +1233 22 168 44 1 1 1 "VISpor6a - 312782648" +1234 58 162 72 1 1 1 "VISpor6b - 312782652" +1235 36 206 205 1 1 1 "VISrll - 480149202" +1236 63 209 152 1 1 1 "VISrll1 - 480149206" +1237 122 145 13 1 1 1 "VISrll2/3 - 480149210" +1238 66 143 206 1 1 1 "VISrll4 - 480149214" +1239 180 193 233 1 1 1 "VISrll5 - 480149218" +1240 231 50 196 1 1 1 "VISrll6a - 480149222" +1241 226 216 234 1 1 1 "VISrll6b - 480149226" +1242 206 196 187 1 1 1 "VISlla - 480149230" +1243 31 93 221 1 1 1 "VISlla1 - 480149234" +1244 191 209 156 1 1 1 "VISlla2/3 - 480149238" +1245 1 55 70 1 1 1 "VISlla4 - 480149242" +1246 37 32 81 1 1 1 "VISlla5 - 480149246" +1247 77 234 201 1 1 1 "VISlla6a - 480149250" +1248 162 65 100 1 1 1 "VISlla6b - 480149254" +1249 170 17 30 1 1 1 "VISmma - 480149258" +1250 86 59 151 1 1 1 "VISmma1 - 480149262" +1251 139 77 20 1 1 1 "VISmma2/3 - 480149266" +1252 96 190 162 1 1 1 "VISmma4 - 480149270" +1253 244 34 225 1 1 1 "VISmma5 - 480149274" +1254 239 44 165 1 1 1 "VISmma6a - 480149278" +1255 146 104 187 1 1 1 "VISmma6b - 480149282" +1256 107 151 172 1 1 1 "VISmmp - 480149286" +1257 46 136 65 1 1 1 "VISmmp1 - 480149290" +1258 42 1 184 1 1 1 "VISmmp2/3 - 480149294" +1259 115 79 184 1 1 1 "VISmmp4 - 480149298" +1260 242 69 229 1 1 1 "VISmmp5 - 480149302" +1261 99 168 89 1 1 1 "VISmmp6a - 480149306" +1262 235 39 172 1 1 1 "VISmmp6b - 480149310" +1263 94 106 59 1 1 1 "VISm - 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+1287 92 45 167 1 1 1 "LGd-ip - 496345672" +1288 77 201 103 1 1 1 "FRP5 - 526157192" +1289 229 192 116 1 1 1 "FRP6a - 526157196" +1290 100 223 146 1 1 1 "FRP6b - 526322264" +1291 201 115 40 1 1 1 "ORBm6b - 527696977" +1292 220 208 119 1 1 1 "LSS - 549009199" +1293 158 154 226 1 1 1 "RPF - 549009203" +1294 71 130 122 1 1 1 "InCo - 549009207" +1295 205 150 224 1 1 1 "MA3 - 549009211" +1296 203 98 18 1 1 1 "P5 - 549009215" +1297 63 140 133 1 1 1 "Acs5 - 549009219" +1298 144 136 52 1 1 1 "PC5 - 549009223" +1299 83 190 194 1 1 1 "I5 - 549009227" +1300 98 1 146 1 1 1 "Eth - 560581551" +1301 148 62 164 1 1 1 "REth - 560581555" +1302 24 91 121 1 1 1 "Xi - 560581559" +1303 189 171 43 1 1 1 "PIL - 560581563" +1304 116 210 168 1 1 1 "PoT - 563807435" +1305 64 176 54 1 1 1 "IntG - 563807439" +1306 188 14 190 1 1 1 "VMPO - 576073699" +1307 117 253 191 1 1 1 "PeF - 576073704" +1308 181 38 206 1 1 1 "HATA - 589508447" +1309 61 217 136 1 1 1 "Pa5 - 589508451" +1310 149 235 252 1 1 1 "VeCB - 589508455" +1311 8 125 240 1 1 1 "SCO - 599626923" +1312 123 208 45 1 1 1 "PDTg - 599626927" +1313 119 78 176 1 1 1 "MMl - 606826647" +1314 78 10 28 1 1 1 "MMm - 606826651" +1315 92 236 23 1 1 1 "MMp - 606826655" +1316 249 73 179 1 1 1 "MMd - 606826659" +1317 247 145 28 1 1 1 "Pa4 - 606826663" +1318 95 83 50 1 1 1 "PN - 607344830" +1319 37 180 73 1 1 1 "IPR - 607344834" +1320 59 118 147 1 1 1 "IPC - 607344838" +1321 106 74 141 1 1 1 "IPA - 607344842" +1322 119 83 96 1 1 1 "IPL - 607344846" +1323 119 95 65 1 1 1 "IPI - 607344850" +1324 7 73 191 1 1 1 "IPDM - 607344854" +1325 187 228 175 1 1 1 "IPDL - 607344858" +1326 224 228 204 1 1 1 "IPRL - 607344862" +1327 214 229 231 1 1 1 "Su3 - 614454277" diff --git a/scripts/reformat_allen_label.py b/scripts/reformat_allen_label.py index 845e7be8b3d17789accb825eec69e7e1a1748509..5320067f07ef10a88475ab43e232daf8b10d848e 100644 --- a/scripts/reformat_allen_label.py +++ b/scripts/reformat_allen_label.py @@ -1,12 +1,26 @@ import pandas as pd -#open colour txt file -path = "itksnap_label_description.txt" +def reformat_allen_label(inputpath, outputpath): + df = pd.read_csv(inputpath, sep=" ", header=None, names=["id", "r", "g", "b", "1a", "1b", "1c", "name"]) + ##for reading gergely format labels try the skiprows argument (might be mispelt sorry). check the + ##read csv documentation for more details. + + # this is to reformat the name to allenID + df[["name", "allenID"]] = df["name"].str.split(' - ', expand=True) + + # this is to add on "root" as this was missing from the Allen file + df = df.append({"allenID": 0, "name": "background", "r": 255, "g": 255, "b": 255}, ignore_index=True) + df.to_csv(outputpath, index=False) + +reformat_allen_label("../junk/itksnap_label_description_2022.txt","../junk/allen2022_colours.csv") + + +"""Task: Modify the function to reformat Gergely's label files""" + +def reformat_label(inputpath, outputpath): + df = pd.read_csv(inputpath, sep = " ", header=None) + df.to_csv(outputpath, index=False) + +reformat_label("../annotation_volumes/AllenMouseBrain_Atlas_CCF_2017.label","../annotation_volumes/allen2017_colours.csv") -# use " " as separator -#set column names -df = pd.read_csv(path, sep=" ", header=None, names=["id", "r", "g", "b", "1a", "1b", "1c", "name"]) -df[["name", "allenID"]] = df["name"].str.split(' - ', expand=True) -df = df.append({"allenID": 0, "name": "background", "r": 255, "g": 255, "b": 255}, ignore_index=True) -df.to_csv("allen2022_colours.csv", index=False) diff --git a/test/test2.json b/test/test2.json index 0f2f534798bb9bd2dc0a731ff3108d05cbc7aec3..54d98b4b50d049d68d79212a6d9f270024ad3e00 100644 --- a/test/test2.json +++ b/test/test2.json @@ -1,6 +1,5 @@ -{ "volume_path": "../annotation_volumes/annotation_10_reoriented.nrrd", +{ "volume_path": "../annotation_volumes/annotation_10_reoriented_2022.nrrd", "label_path": "../annotation_volumes/allen2022_colours.csv", - "allen_colours": "../annotation_volumes/allen2022_colours.csv", "segmentation_folder": "../test_data/oneSection15", "alignment_json": "../test_data/C68_nonlinear_no_markers.json", "nonlinear": true, diff --git a/test/test3.json b/test/test3.json index 28af9a716aab7d198b910ee887ce50c5691514dc..3d2a35f58f657f603322b094480cfe9b35cc9630 100644 --- a/test/test3.json +++ b/test/test3.json @@ -1,6 +1,5 @@ { "volume_path": "../annotation_volumes/annotation_10_reoriented.nrrd", "label_path": "../annotation_volumes/allen2022_colours.csv", - "allen_colours": "../annotation_volumes/allen2022_colours.csv", "segmentation_folder": "../test_data/oneSection15", "alignment_json": "../test_data/C68_nonlinear.json", "nonlinear": true,