From b9c59e9a1d18a61b9ee2b833bdf37cc5d01caece Mon Sep 17 00:00:00 2001
From: polarbean <harry.carey95@gmail.com>
Date: Wed, 23 Oct 2024 21:39:53 +0200
Subject: [PATCH] restructure into subfolders
---
PyNutil/coordinate_extraction.py | 4 ++--
PyNutil/io/__init__.py | 1 +
PyNutil/{ => io}/atlas_loader.py | 0
PyNutil/{ => io}/file_operations.py | 0
PyNutil/{ => io}/propagation.py | 0
PyNutil/{ => io}/read_and_write.py | 0
PyNutil/{ => io}/reconstruct_dzi.py | 0
PyNutil/main.py | 4 ++--
8 files changed, 5 insertions(+), 4 deletions(-)
create mode 100644 PyNutil/io/__init__.py
rename PyNutil/{ => io}/atlas_loader.py (100%)
rename PyNutil/{ => io}/file_operations.py (100%)
rename PyNutil/{ => io}/propagation.py (100%)
rename PyNutil/{ => io}/read_and_write.py (100%)
rename PyNutil/{ => io}/reconstruct_dzi.py (100%)
diff --git a/PyNutil/coordinate_extraction.py b/PyNutil/coordinate_extraction.py
index 3f29d1b..9e1c3fd 100644
--- a/PyNutil/coordinate_extraction.py
+++ b/PyNutil/coordinate_extraction.py
@@ -1,6 +1,6 @@
import numpy as np
import pandas as pd
-from .read_and_write import load_visualign_json
+from .io.read_and_write import load_visualign_json
from .counting_and_load import flat_to_dataframe
from .visualign_deformations import triangulate, transform_vec
from glob import glob
@@ -8,7 +8,7 @@ import cv2
from skimage import measure
import threading
import re
-from .reconstruct_dzi import reconstruct_dzi
+from .io.reconstruct_dzi import reconstruct_dzi
def number_sections(filenames, legacy=False):
diff --git a/PyNutil/io/__init__.py b/PyNutil/io/__init__.py
new file mode 100644
index 0000000..b6e690f
--- /dev/null
+++ b/PyNutil/io/__init__.py
@@ -0,0 +1 @@
+from . import *
diff --git a/PyNutil/atlas_loader.py b/PyNutil/io/atlas_loader.py
similarity index 100%
rename from PyNutil/atlas_loader.py
rename to PyNutil/io/atlas_loader.py
diff --git a/PyNutil/file_operations.py b/PyNutil/io/file_operations.py
similarity index 100%
rename from PyNutil/file_operations.py
rename to PyNutil/io/file_operations.py
diff --git a/PyNutil/propagation.py b/PyNutil/io/propagation.py
similarity index 100%
rename from PyNutil/propagation.py
rename to PyNutil/io/propagation.py
diff --git a/PyNutil/read_and_write.py b/PyNutil/io/read_and_write.py
similarity index 100%
rename from PyNutil/read_and_write.py
rename to PyNutil/io/read_and_write.py
diff --git a/PyNutil/reconstruct_dzi.py b/PyNutil/io/reconstruct_dzi.py
similarity index 100%
rename from PyNutil/reconstruct_dzi.py
rename to PyNutil/io/reconstruct_dzi.py
diff --git a/PyNutil/main.py b/PyNutil/main.py
index c76bdaf..b4cd489 100644
--- a/PyNutil/main.py
+++ b/PyNutil/main.py
@@ -1,10 +1,10 @@
import json
import os
-from .atlas_loader import load_atlas_data, load_custom_atlas
+from .io.atlas_loader import load_atlas_data, load_custom_atlas
from .coordinate_processing import extract_coordinates, label_points_group
from .data_analysis import quantify_labeled_points
-from .file_operations import save_analysis_output
+from .io.file_operations import save_analysis_output
class PyNutil:
--
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