From a8adf6e8dde0d0e4ab2b3317ec2569e4c86cb094 Mon Sep 17 00:00:00 2001
From: polarbean <harry.carey95@gmail.com>
Date: Wed, 21 Aug 2024 18:09:06 +0200
Subject: [PATCH] removed excessive print statements
---
PyNutil/coordinate_extraction.py | 1 -
PyNutil/main.py | 4 ----
PyNutil/read_and_write.py | 5 -----
PyNutil/visualign_deformations.py | 4 ----
scripts/waln_to_json.py | 15 ---------------
5 files changed, 29 deletions(-)
diff --git a/PyNutil/coordinate_extraction.py b/PyNutil/coordinate_extraction.py
index 761d01e..4559ceb 100644
--- a/PyNutil/coordinate_extraction.py
+++ b/PyNutil/coordinate_extraction.py
@@ -246,7 +246,6 @@ def load_segmentation(segmentation_path: str):
def detect_pixel_id(segmentation: np.array):
"""Remove the background from the segmentation and return the pixel id."""
segmentation_no_background = segmentation[~np.all(segmentation == 0, axis=2)]
- print("length of non background pixels: ", len(segmentation_no_background))
pixel_id = segmentation_no_background[0]
print("detected pixel_id: ", pixel_id)
return pixel_id
diff --git a/PyNutil/main.py b/PyNutil/main.py
index 02df14d..0feb176 100644
--- a/PyNutil/main.py
+++ b/PyNutil/main.py
@@ -245,8 +245,6 @@ class PyNutil:
per_section_df = []
current_centroids = None
current_points = None
- print("region areas list")
- print(self.region_areas_list)
for pl, cl, ra in zip(
self.points_len, self.centroids_len, self.region_areas_list
):
@@ -257,8 +255,6 @@ class PyNutil:
current_df = pixel_count_per_region(
current_points, current_centroids, self.atlas_labels
)
- print("current df", current_df)
-
# create the df for section report and all report
# pixel_count_per_region returns a df with idx, pixel count, name and RGB.
# ra is region area list from
diff --git a/PyNutil/read_and_write.py b/PyNutil/read_and_write.py
index be1f84e..c243c57 100644
--- a/PyNutil/read_and_write.py
+++ b/PyNutil/read_and_write.py
@@ -17,7 +17,6 @@ def load_visualign_json(filename):
slices = vafile["sections"]
vafile["slices"] = slices
for slice in slices:
- print(slice)
slice["nr"] = int(re.search(r"_s(\d+)", slice["filename"]).group(1))
if "ouv" in slice:
slice["anchoring"] = slice["ouv"]
@@ -108,7 +107,6 @@ def flat_to_array(file, labelfile):
if "SegRLEv1" != f.read(8).decode():
raise "Header mismatch"
atlas = f.read(code()).decode()
- print(f"Target atlas: {atlas}")
codes = [code() for x in range(code())]
w = code()
h = code()
@@ -158,9 +156,6 @@ def files_in_directory(directory):
list_of_files = []
for file in os.scandir(directory):
if file.path.endswith(".flat") and file.is_file:
- # print(filename.path)
- # newfilename, file_ext = os.path.splitext(filename)
- # print(newfilename)
filename = os.path.basename(file)
newfilename, file_ext = os.path.splitext(filename)
list_of_files.append(newfilename)
diff --git a/PyNutil/visualign_deformations.py b/PyNutil/visualign_deformations.py
index 75f9fa2..5de1658 100644
--- a/PyNutil/visualign_deformations.py
+++ b/PyNutil/visualign_deformations.py
@@ -154,8 +154,6 @@ class Triangle:
self.decomp = inv3x3(
[[bx - ax, by - ay, 0], [cx - ax, cy - ay, 0], [ax, ay, 1]]
)
- if self.decomp == None:
- print("e")
a2 = distsquare(bx, by, cx, cy)
b2 = distsquare(ax, ay, cx, cy)
c2 = distsquare(ax, ay, bx, by)
@@ -211,8 +209,6 @@ class Triangle:
)
def intriangle_vec(self, x, y, xPrime, yPrime):
- if self.decomp is None:
- print("e")
uv1 = rowmul3_vec(x, y, self.decomp)
# also compute the next step, since it uses the parameters of this triangle
ok = (
diff --git a/scripts/waln_to_json.py b/scripts/waln_to_json.py
index 342c30f..237c781 100644
--- a/scripts/waln_to_json.py
+++ b/scripts/waln_to_json.py
@@ -16,7 +16,6 @@ def waln_to_json(filename):
vafile["slices"] = slices
for slice in slices:
- print(slice) # this prints info from waln to screen.
if "filename" in slice:
base_name = os.path.basename(slice["filename"]).split('.')[0]
new_filename = base_name + '.png'
@@ -24,18 +23,6 @@ def waln_to_json(filename):
slice["nr"] = int(re.search(r"_s(\d+)", slice["filename"]).group(1))
if "ouv" in slice:
slice["anchoring"] = slice["ouv"]
-
- '''
- for slice in slices:
- print(slice) # this prints info from waln to screen.
- if "filename" in slice:
- name, old_extension = slice["filename"].rsplit('.',1)
- new_filename = name + '.png'
- slice["filename"] = new_filename
- slice["nr"] = int(re.search(r"_s(\d+)", slice["filename"]).group(1))
- if "ouv" in slice:
- slice["anchoring"] = slice["ouv"]
- '''
name = os.path.basename(filename)
va_compat_file = {
@@ -51,8 +38,6 @@ def waln_to_json(filename):
#json.dump(va_compat_file, f, indent=4)
json.dump(va_compat_file, f, indent=4)
- print("Waln or Wwrp converted successfully to JSON")
-
else:
pass
--
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