diff --git a/README.md b/README.md index 18be14552f5a061bb6e24040e152f2a34216c0eb..98e665a6c3417ea46f3bf7bc600fee73c775c529 100644 --- a/README.md +++ b/README.md @@ -64,9 +64,9 @@ If you use an atlas which has a hemisphere map (All brainglobe atlases have this The QCAlign tool allows you to mark damaged areas on your section. This means that these damaged areas are excluded from your point clouds. In addition, PyNutil will seperately quantify damaged and undamaged areas. Note the undamaged, and damaged column names. # Meshview json files PyNutil will produce meshview json files. This can be opened in [MeshView for the Allen Mouse](https://meshview.apps.ebrains.eu/?atlas=ABA_Mouse_CCFv3_2017_25um) or for [the Waxholm Rat](https://meshview.apps.ebrains.eu/) -<video src="https://github.com/Neural-Systems-at-UIO/PyNutil/raw/refs/heads/main/docs/assets/MeshView.mp4" autoplay loop muted controls style="max-width: 100%;"> - Your browser does not support embedded videos. -</video> + +https://github.com/user-attachments/assets/d3a43ca9-133e-40d1-a1b9-9a359deabf2d + # Interpreting the Results Each column name has the following definition | Column | Definition |