From 8e3c2bfeea5e0318493077a974adf4ae57d1ee14 Mon Sep 17 00:00:00 2001
From: polarbean <harry.carey95@gmail.com>
Date: Wed, 23 Oct 2024 21:48:16 +0200
Subject: [PATCH] seperated all scripts into seperate directories
---
PyNutil/main.py | 6 +++---
PyNutil/processing/__init__.py | 1 +
PyNutil/{ => processing}/coordinate_extraction.py | 4 ++--
PyNutil/{ => processing}/counting_and_load.py | 0
PyNutil/{ => processing}/data_analysis.py | 0
PyNutil/{ => processing}/generate_target_slice.py | 0
PyNutil/{ => processing}/visualign_deformations.py | 0
7 files changed, 6 insertions(+), 5 deletions(-)
create mode 100644 PyNutil/processing/__init__.py
rename PyNutil/{ => processing}/coordinate_extraction.py (99%)
rename PyNutil/{ => processing}/counting_and_load.py (100%)
rename PyNutil/{ => processing}/data_analysis.py (100%)
rename PyNutil/{ => processing}/generate_target_slice.py (100%)
rename PyNutil/{ => processing}/visualign_deformations.py (100%)
diff --git a/PyNutil/main.py b/PyNutil/main.py
index 3255d35..50fe311 100644
--- a/PyNutil/main.py
+++ b/PyNutil/main.py
@@ -2,10 +2,10 @@ import json
import os
from .io.atlas_loader import load_atlas_data, load_custom_atlas
-from .data_analysis import quantify_labeled_points
+from .processing.data_analysis import quantify_labeled_points
from .io.file_operations import save_analysis_output
-from .coordinate_extraction import folder_to_atlas_space
-from .counting_and_load import label_points
+from .processing.coordinate_extraction import folder_to_atlas_space
+from .processing.counting_and_load import label_points
class PyNutil:
diff --git a/PyNutil/processing/__init__.py b/PyNutil/processing/__init__.py
new file mode 100644
index 0000000..b6e690f
--- /dev/null
+++ b/PyNutil/processing/__init__.py
@@ -0,0 +1 @@
+from . import *
diff --git a/PyNutil/coordinate_extraction.py b/PyNutil/processing/coordinate_extraction.py
similarity index 99%
rename from PyNutil/coordinate_extraction.py
rename to PyNutil/processing/coordinate_extraction.py
index 9e1c3fd..622d957 100644
--- a/PyNutil/coordinate_extraction.py
+++ b/PyNutil/processing/coordinate_extraction.py
@@ -1,6 +1,6 @@
import numpy as np
import pandas as pd
-from .io.read_and_write import load_visualign_json
+from ..io.read_and_write import load_visualign_json
from .counting_and_load import flat_to_dataframe
from .visualign_deformations import triangulate, transform_vec
from glob import glob
@@ -8,7 +8,7 @@ import cv2
from skimage import measure
import threading
import re
-from .io.reconstruct_dzi import reconstruct_dzi
+from ..io.reconstruct_dzi import reconstruct_dzi
def number_sections(filenames, legacy=False):
diff --git a/PyNutil/counting_and_load.py b/PyNutil/processing/counting_and_load.py
similarity index 100%
rename from PyNutil/counting_and_load.py
rename to PyNutil/processing/counting_and_load.py
diff --git a/PyNutil/data_analysis.py b/PyNutil/processing/data_analysis.py
similarity index 100%
rename from PyNutil/data_analysis.py
rename to PyNutil/processing/data_analysis.py
diff --git a/PyNutil/generate_target_slice.py b/PyNutil/processing/generate_target_slice.py
similarity index 100%
rename from PyNutil/generate_target_slice.py
rename to PyNutil/processing/generate_target_slice.py
diff --git a/PyNutil/visualign_deformations.py b/PyNutil/processing/visualign_deformations.py
similarity index 100%
rename from PyNutil/visualign_deformations.py
rename to PyNutil/processing/visualign_deformations.py
--
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