From 78ea94a642f5574da50218f6fd9d85cb9df5cac1 Mon Sep 17 00:00:00 2001
From: polarbean <harry.carey95@gmail.com>
Date: Wed, 21 Aug 2024 17:10:53 +0200
Subject: [PATCH] begin to introduce custom atlas function
---
.gitignore | 3 +++
PyNutil/main.py | 5 +++++
2 files changed, 8 insertions(+)
diff --git a/.gitignore b/.gitignore
index 7ad8120..57e17bc 100644
--- a/.gitignore
+++ b/.gitignore
@@ -167,3 +167,6 @@ test_data/tTA_2877_NOP_horizontal_final_2017.json
fileForMessingAround.py
outputs/
+test_data/
+test/
+PyNutil/metadata/annotation_volumes/
\ No newline at end of file
diff --git a/PyNutil/main.py b/PyNutil/main.py
index 57194a4..320776e 100644
--- a/PyNutil/main.py
+++ b/PyNutil/main.py
@@ -146,6 +146,11 @@ class PyNutil:
print("atlas labels loaded ✅")
return atlas_volume, atlas_labels
+ def load_custom_atlas(self, atlas_path, label_path):
+ atlas_volume = read_atlas_volume(atlas_path)
+ atlas_labels = pd.read_csv(label_path)
+ return atlas_volume, atlas_labels
+
def get_coordinates(
self, non_linear=True, method="all", object_cutoff=0, use_flat=False
):
--
GitLab