diff --git a/PyNutil/folder_of_segmentations_to_meshview_multithreaded.py b/PyNutil/folder_of_segmentations_to_meshview_multithreaded.py index 1103e73112f3ee2951fdf61acd791b44c0c873d5..83f31c003d6637b0274ff57bfe5ffa9641f44f09 100644 --- a/PyNutil/folder_of_segmentations_to_meshview_multithreaded.py +++ b/PyNutil/folder_of_segmentations_to_meshview_multithreaded.py @@ -10,7 +10,7 @@ import json from datetime import datetime #import json, use to define input parameters -with open('../input/input.json', 'r') as f: +with open('../test/test1.json', 'r') as f: input = json.load(f) #print(input) diff --git a/test/test1.json b/test/test1.json new file mode 100644 index 0000000000000000000000000000000000000000..2e88cc349729780580c98eb7c4a033b0ffb86d27 --- /dev/null +++ b/test/test1.json @@ -0,0 +1,10 @@ +{ "volume_path": "../annotation_volumes/annotation_10_reoriented.nrrd", + "label_path": "../annotation_volumes/allen2022_colours.csv", + "allen_colours": "../annotation_volumes/allen2022_colours.csv", + "segmentation_folder": "../test_data/tTA_2877_NOP", + "alignment_json": "../test_data/tTA_2877_NOP_horizontal_final_2017.json", + "nonlinear": true, + "colour": [0, 0, 255], + "points_json_path": "../outputs/test1.json", + "counts_per_label_name": "../outputs/test1_counts_per_allenID.csv" +} \ No newline at end of file diff --git a/test/test2.json b/test/test2.json new file mode 100644 index 0000000000000000000000000000000000000000..0f2f534798bb9bd2dc0a731ff3108d05cbc7aec3 --- /dev/null +++ b/test/test2.json @@ -0,0 +1,10 @@ +{ "volume_path": "../annotation_volumes/annotation_10_reoriented.nrrd", + "label_path": "../annotation_volumes/allen2022_colours.csv", + "allen_colours": "../annotation_volumes/allen2022_colours.csv", + "segmentation_folder": "../test_data/oneSection15", + "alignment_json": "../test_data/C68_nonlinear_no_markers.json", + "nonlinear": true, + "colour": [255, 0, 255], + "points_json_path": "../outputs/test2_points.json", + "counts_per_label_name": "../outputs/test2_counts_per_allenID.csv" +} \ No newline at end of file diff --git a/test/test3.json b/test/test3.json new file mode 100644 index 0000000000000000000000000000000000000000..28af9a716aab7d198b910ee887ce50c5691514dc --- /dev/null +++ b/test/test3.json @@ -0,0 +1,10 @@ +{ "volume_path": "../annotation_volumes/annotation_10_reoriented.nrrd", + "label_path": "../annotation_volumes/allen2022_colours.csv", + "allen_colours": "../annotation_volumes/allen2022_colours.csv", + "segmentation_folder": "../test_data/oneSection15", + "alignment_json": "../test_data/C68_nonlinear.json", + "nonlinear": true, + "colour": [255, 0, 255], + "points_json_path": "../outputs/test3_points.json", + "counts_per_label_name": "../outputs/test3_counts_per_allenID.csv" +} \ No newline at end of file