diff --git a/PyNutilGUI.py b/PyNutilGUI.py
index f86b11ea289b2b83f13816abc9465484c3cfa929..f55435fdfe8c4f76e5a22c4914a868aea282dfed 100644
--- a/PyNutilGUI.py
+++ b/PyNutilGUI.py
@@ -34,8 +34,9 @@ def about_pynutil():
 
 #Creating a menu
 root.option_add('*tearOff', FALSE)
-win = Toplevel(root)
-menubar = Menu(win)
+#win = Toplevel(root)
+#menubar = Menu(win)
+menubar = Menu(root)
 #win['menu'] = menubar
 root.config(menu=menubar)
 
@@ -57,29 +58,33 @@ root.columnconfigure(0, weight=1) # column to expand if there is extra space
 root.rowconfigure(0, weight=1) # row to expand if there is extra space
 
 #ttk.Label(mainframe, text="PyNutil settings:").grid(column=0, row=1, sticky=W)
-ttk.Label(mainframe, text="Reference atlas", width=20).grid(column=1, row=1, sticky=W)
-ttk.Label(mainframe, text="Registration JSON", width=20).grid(column=1, row=2, sticky=W)
-ttk.Label(mainframe, text="Segmentation folder", width=20).grid(column=1, row=3, sticky=W)
-ttk.Label(mainframe, text="Object colour", width=20).grid(column=1, row=4, sticky=W)
-ttk.Label(mainframe, text="Output directory", width=20).grid(column=1, row=5, sticky=W)
-
-ttk.Button(mainframe, text="Help", width=8, command="buttonpressed").grid(column=2, row=1, sticky=W)
-ttk.Button(mainframe, text="Help", width=8, command="buttonpressed").grid(column=2, row=2, sticky=W)
-ttk.Button(mainframe, text="Help", width=8, command="buttonpressed").grid(column=2, row=3, sticky=W)
-ttk.Button(mainframe, text="Help", width=8, command="buttonpressed").grid(column=2, row=4, sticky=W)
-ttk.Button(mainframe, text="Help", width=8, command="buttonpressed").grid(column=2, row=5, sticky=W)
-
-ttk.OptionMenu(mainframe, selected_atlas, *atlas).grid(column=3, row=1, sticky=W)
-ttk.OptionMenu(mainframe, selected_directory, *directory).grid(column=3, row=2, sticky=W)
-ttk.OptionMenu(mainframe, selected_directory, *directory).grid(column=3, row=3, sticky=W)
-ttk.OptionMenu(mainframe, selected_colour, *colour).grid(column=3, row=4, sticky=W)
-ttk.OptionMenu(mainframe, selected_directory, *directory).grid(column=3, row=5, sticky=W)
-
-ttk.Button(mainframe, width=16, text="Browse...", command="buttonpressed").grid(column=4, row=1, sticky=W)
-ttk.Button(mainframe, width=16, text="Browse...", command="buttonpressed").grid(column=4, row=2, sticky=W)
-ttk.Button(mainframe, width=16, text="Browse...", command="buttonpressed").grid(column=4, row=3, sticky=W)
-ttk.Button(mainframe, width=16, text="Select colour", command="buttonpressed").grid(column=4, row=4, sticky=W)
-ttk.Button(mainframe, width=16, text="Browse...", command="buttonpressed").grid(column=4, row=5, sticky=W)
+ttk.Label(mainframe, text="Select reference atlas:", width=30).grid(column=1, row=1, sticky=W)
+ttk.Label(mainframe, text="Select registration JSON:", width=30).grid(column=1, row=2, sticky=W)
+ttk.Label(mainframe, text="Select segmentation folder:", width=30).grid(column=1, row=3, sticky=W)
+ttk.Label(mainframe, text="Select object colour:", width=30).grid(column=1, row=4, sticky=W)
+ttk.Label(mainframe, text="Select output directory:", width=30).grid(column=1, row=5, sticky=W)
+ttk.Label(mainframe, text="Start analysis:", width=30).grid(column=1, row=6, sticky=W)
+
+ttk.Button(mainframe, text="Help", width=8, command="buttonpressed").grid(column=3, row=1, sticky=W)
+ttk.Button(mainframe, text="Help", width=8, command="buttonpressed").grid(column=3, row=2, sticky=W)
+ttk.Button(mainframe, text="Help", width=8, command="buttonpressed").grid(column=3, row=3, sticky=W)
+ttk.Button(mainframe, text="Help", width=8, command="buttonpressed").grid(column=3, row=4, sticky=W)
+ttk.Button(mainframe, text="Help", width=8, command="buttonpressed").grid(column=3, row=5, sticky=W)
+ttk.Button(mainframe, text="Docs", width=8, command="buttonpressed").grid(column=3, row=6, sticky=W)
+
+
+ttk.OptionMenu(mainframe, selected_atlas, *atlas).grid(column=2, row=1, sticky=W)
+#ttk.OptionMenu(mainframe, selected_directory, *directory).grid(column=3, row=2, sticky=W)
+#ttk.OptionMenu(mainframe, selected_directory, *directory).grid(column=3, row=3, sticky=W)
+#ttk.OptionMenu(mainframe, selected_colour, *colour).grid(column=3, row=4, sticky=W)
+#ttk.OptionMenu(mainframe, selected_directory, *directory).grid(column=3, row=5, sticky=W)
+
+#ttk.Button(mainframe, width=16, text="Browse...", command="buttonpressed").grid(column=4, row=1, sticky=W)
+ttk.Button(mainframe, width=16, text="Browse...", command="buttonpressed").grid(column=2, row=2, sticky=W)
+ttk.Button(mainframe, width=16, text="Browse...", command="buttonpressed").grid(column=2, row=3, sticky=W)
+ttk.Button(mainframe, width=16, text="Colour", command="buttonpressed").grid(column=2, row=4, sticky=W)
+ttk.Button(mainframe, width=16, text="Browse...", command="buttonpressed").grid(column=2, row=5, sticky=W)
+ttk.Button(mainframe, width=16, text="Run", command="buttonpressed").grid(column= 2, row=6, sticky=W)
 
 # sunken frame around mainframe
 """