From 13a542b55405b39572e0572be9870b1577c761a0 Mon Sep 17 00:00:00 2001 From: Sharon Yates <30626642+sharoncy@users.noreply.github.com> Date: Mon, 24 Feb 2025 12:35:38 +0100 Subject: [PATCH] Update README.md --- README.md | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/README.md b/README.md index 131ce90..c7ae4b7 100644 --- a/README.md +++ b/README.md @@ -29,7 +29,10 @@ Here we define a quantifier object The segmentations should be images which come out of ilastik, segmenting an object of interest The alignment json should be out of DeepSlice, QuickNII, or VisuAlign, it defines the sections position in an atlas The colour says which colour is the object you want to quantify in your segmentation. It is defined in RGB -Finally the atlas name is the relevant atlas from brainglobe_atlasapi you wish to use in Quantification. +Finally the atlas name is the relevant atlas from brainglobe_atlasapi or a custom atlas. + +basic_example_custom_atlas.py + """ pnt = PyNutil( segmentation_folder='../tests/test_data/big_caudoputamen_test/', -- GitLab