From f8027c5ffc37f53bdcd3d0ed23185da0cff20d12 Mon Sep 17 00:00:00 2001
From: Eleni Mathioulaki <emathioulaki@athenarc.gr>
Date: Tue, 18 Apr 2023 23:33:05 +0200
Subject: [PATCH] add missing py-setuptools dependency
---
packages/biobb-common/package.py | 4 ++--
packages/biobb-gromacs/package.py | 3 ++-
packages/py-efel/package.py | 1 +
packages/py-flask-restx/package.py | 1 +
packages/py-hbp-archive/package.py | 1 +
packages/py-hbp-neuromorphic-platform/package.py | 7 ++++---
packages/py-hippounit/package.py | 7 ++++---
packages/py-mmcif-pdbx/package.py | 2 ++
packages/py-morphio/package.py | 5 +++--
packages/py-morphounit/package.py | 13 +++++++------
packages/py-nameparser/package.py | 1 +
packages/py-nested-dict/package.py | 10 ++--------
packages/py-neurom/package.py | 1 +
packages/py-pdb2pqr/package.py | 1 +
packages/py-propka/package.py | 2 ++
packages/py-pynn/package.py | 2 ++
packages/py-pyswarms/package.py | 1 +
packages/py-quantities-scidash/package.py | 1 +
packages/py-sciunit/package.py | 1 +
packages/py-tvb-data/package.py | 1 +
20 files changed, 40 insertions(+), 25 deletions(-)
diff --git a/packages/biobb-common/package.py b/packages/biobb-common/package.py
index 2bb4d1fd..6a5aa81f 100644
--- a/packages/biobb-common/package.py
+++ b/packages/biobb-common/package.py
@@ -19,8 +19,8 @@ class BiobbCommon(PythonPackage):
version('3.8.1', sha256='b6c939c1445ea2f8282e491e0414cc15f4934466ca24ecd77e24cef2e7df49e4')
# Dependencies
- depends_on('py-setuptools')
- depends_on('python@3.8:', type=('build', 'run'))
+ depends_on('python@3.8:')
+ depends_on('py-setuptools', type=('build'))
depends_on('py-pyyaml', type=('build', 'run'))
depends_on('py-requests', type=('build', 'run'))
depends_on('py-biopython@1.78:1.80', type=('build', 'run'))
diff --git a/packages/biobb-gromacs/package.py b/packages/biobb-gromacs/package.py
index 16f643c7..c99d49af 100644
--- a/packages/biobb-gromacs/package.py
+++ b/packages/biobb-gromacs/package.py
@@ -20,6 +20,7 @@ class BiobbGromacs(PythonPackage):
version('3.8.1', sha256='6da49b691b14a8bcf7ffca08c898fe9affd258ca2f8c7be4981df840a6907efa')
# Dependencies
- depends_on('python@3.8:',type=('build', 'run'))
+ depends_on('python@3.8:')
+ depends_on('py-setuptools', type=('build'))
depends_on('biobb-common@3.8.1', type=('build', 'run'), when='@3.8.1')
depends_on('gromacs')
diff --git a/packages/py-efel/package.py b/packages/py-efel/package.py
index 091bf110..ac156b16 100644
--- a/packages/py-efel/package.py
+++ b/packages/py-efel/package.py
@@ -17,5 +17,6 @@ class PyEfel(PythonPackage):
version("4.0.4", sha256="258c506776df609edc799338fd773e78f0f0315fd6f3e2f969478bda401a8894")
depends_on("python@3.6.9:")
+ depends_on("py-setuptools", type=("build"))
depends_on("py-numpy@1.6:", type=("build", "run"))
depends_on("py-six", type=("build", "run"))
diff --git a/packages/py-flask-restx/package.py b/packages/py-flask-restx/package.py
index df6f3888..c0acc680 100644
--- a/packages/py-flask-restx/package.py
+++ b/packages/py-flask-restx/package.py
@@ -23,6 +23,7 @@ class PyFlaskRestx(PythonPackage):
# setup_requires
depends_on('py-pip', type=('build'))
+ depends_on('py-setuptools', type=('build'))
depends_on('py-flask', type=('build', 'run'))
depends_on('py-aniso8601', type=('build', 'run'))
depends_on('py-jsonschema', type=('build', 'run'))
diff --git a/packages/py-hbp-archive/package.py b/packages/py-hbp-archive/package.py
index a96d25e9..c982f390 100644
--- a/packages/py-hbp-archive/package.py
+++ b/packages/py-hbp-archive/package.py
@@ -18,6 +18,7 @@ class PyHbpArchive(PythonPackage):
version('1.1.1', sha256='08059d3bcca4dcbc36951c82e75513bc50d8d59f1720a28bebf57a622d869f41')
depends_on('python@3.6.9:')
+ depends_on('py-setuptools', type=('build'))
depends_on('py-lxml@4.6.4:', type=('build', 'run'))
depends_on('py-keystoneauth1@4.3.1:', type=('build', 'run'))
depends_on('py-python-keystoneclient@4.2.0:', type=('build', 'run'))
diff --git a/packages/py-hbp-neuromorphic-platform/package.py b/packages/py-hbp-neuromorphic-platform/package.py
index 5956faf6..ef2ce85f 100644
--- a/packages/py-hbp-neuromorphic-platform/package.py
+++ b/packages/py-hbp-neuromorphic-platform/package.py
@@ -20,6 +20,7 @@ class PyHbpNeuromorphicPlatform(PythonPackage):
version('0.10.1', sha256='76b3acdbc63c901d158bad6d74e26f8a4ad7b10a261c1d51f1e9bf482766bae7')
depends_on('python@3.5:')
- depends_on('py-requests@2.20.0:', type=('build', 'run'))
- depends_on('py-click@8.0.3:', type=('build', 'run'))
- depends_on('py-pyyaml@6.0:', type=('build', 'run'))
+ depends_on('py-setuptools', type=('build'))
+ depends_on('py-requests@2.20.0:', type=('build', 'run'))
+ depends_on('py-click@8.0.3:', type=('build', 'run'))
+ depends_on('py-pyyaml@6.0:', type=('build', 'run'))
diff --git a/packages/py-hippounit/package.py b/packages/py-hippounit/package.py
index 2ed9e0bf..15643555 100644
--- a/packages/py-hippounit/package.py
+++ b/packages/py-hippounit/package.py
@@ -17,6 +17,7 @@ class PyHippounit(PythonPackage):
version('1.3.6', sha256='7342f77575b6d223db4194be37ab73f0eb6370844cbefd2f8374b2c7e27d7d15')
depends_on('python@3.6.9:')
- depends_on('py-future', type=('build', 'run'))
- depends_on('py-sciunit@0.2.5.1:', type=('build', 'run'))
- depends_on('py-efel@4.0.4:', type=('build', 'run'))
+ depends_on('py-setuptools', type=('build'))
+ depends_on('py-future', type=('build', 'run'))
+ depends_on('py-sciunit@0.2.5.1:', type=('build', 'run'))
+ depends_on('py-efel@4.0.4:', type=('build', 'run'))
diff --git a/packages/py-mmcif-pdbx/package.py b/packages/py-mmcif-pdbx/package.py
index 7b53dfae..798e5427 100644
--- a/packages/py-mmcif-pdbx/package.py
+++ b/packages/py-mmcif-pdbx/package.py
@@ -24,3 +24,5 @@ class PyMmcifPdbx(PythonPackage):
maintainers = ['richtesn', 'thielblz']
version('2.0.1', sha256='a1f20cf35f92916160ae066f510cce9a0c21a630d064dafce545ba0cf47c9280')
+
+ depends_on('py-setuptools', type=('build'))
diff --git a/packages/py-morphio/package.py b/packages/py-morphio/package.py
index a2772bd7..5aa308c3 100644
--- a/packages/py-morphio/package.py
+++ b/packages/py-morphio/package.py
@@ -17,5 +17,6 @@ class PyMorphio(PythonPackage):
version('3.1.1', sha256='ad9f0e363f09f03c6eda54f5f3b006d204236677d2f2c9675421e0441033a503')
depends_on('python@3.6.9:')
- depends_on('py-numpy@1.14.1:', type=('build', 'run'))
- depends_on('py-h5py@3.0:4.0', type=('build', 'run'))
+ depends_on('py-setuptools', type=('build'))
+ depends_on('py-numpy@1.14.1:', type=('build', 'run'))
+ depends_on('py-h5py@3.0:4.0', type=('build', 'run'))
diff --git a/packages/py-morphounit/package.py b/packages/py-morphounit/package.py
index 0460b969..b9f7c748 100644
--- a/packages/py-morphounit/package.py
+++ b/packages/py-morphounit/package.py
@@ -17,9 +17,10 @@ class PyMorphounit(PythonPackage):
version('1.0.4', sha256='6dacadc91c66c15af91da8c1d45977e4aeaaa297a7bbc2e679f7d6a5e54e6f32')
depends_on('python@3.6.9:')
- depends_on('py-neo@0.8.0:', type=('build', 'run'))
- depends_on('py-elephant@0.4.1:', type=('build', 'run'))
- depends_on('py-sciunit@0.2.5.1:', type=('build', 'run'))
- depends_on('py-neurom@1.4.10', type=('build', 'run'))
- depends_on('py-tabulate@0.8.6:', type=('build', 'run'))
- depends_on('py-seaborn@0.10.0:', type=('build', 'run'))
+ depends_on('py-setuptools', type=('build'))
+ depends_on('py-neo@0.8.0:', type=('build', 'run'))
+ depends_on('py-elephant@0.4.1:', type=('build', 'run'))
+ depends_on('py-sciunit@0.2.5.1:', type=('build', 'run'))
+ depends_on('py-neurom@1.4.10', type=('build', 'run'))
+ depends_on('py-tabulate@0.8.6:', type=('build', 'run'))
+ depends_on('py-seaborn@0.10.0:', type=('build', 'run'))
diff --git a/packages/py-nameparser/package.py b/packages/py-nameparser/package.py
index bb10a68a..5832dcd7 100644
--- a/packages/py-nameparser/package.py
+++ b/packages/py-nameparser/package.py
@@ -17,3 +17,4 @@ class PyNameparser(PythonPackage):
version('1.1.1', sha256='ce8336ed7464fa7b9b8745f48b9c62dea6bed931b99715ca9479360544992143')
depends_on('python@3.6.9:')
+ depends_on('py-setuptools', type=('build'))
diff --git a/packages/py-nested-dict/package.py b/packages/py-nested-dict/package.py
index 9442c3b1..28098a76 100644
--- a/packages/py-nested-dict/package.py
+++ b/packages/py-nested-dict/package.py
@@ -13,14 +13,8 @@ class PyNestedDict(PythonPackage):
pypi = "nested_dict/nested_dict-1.61.tar.gz"
git = "https://github.com/bunbun/nested-dict"
- # FIXME: Add a list of GitHub accounts to
- # notify when the package is updated.
- # maintainers = ['terhorstd', 'bunbun']
+ maintainers = ['terhorstd', 'bunbun']
version('1.61', sha256='de0fb5bac82ba7bcc23736f09373f18628ea57f92bbaa13480d23f261c41e771')
- # FIXME: Add a build backend, usually defined in pyproject.toml. If no such file
- # exists, use setuptools.
- # depends_on('py-setuptools', type='build')
- # depends_on('py-flit-core', type='build')
- # depends_on('py-poetry-core', type='build')
+ depends_on('py-setuptools', type='build')
diff --git a/packages/py-neurom/package.py b/packages/py-neurom/package.py
index 8ad54dea..e92de6dd 100644
--- a/packages/py-neurom/package.py
+++ b/packages/py-neurom/package.py
@@ -18,6 +18,7 @@ class PyNeurom(PythonPackage):
version('1.4.10', sha256='c94823133bb15b5756c22391e05948871ff77c0212e91ad375903ca437e18aeb')
depends_on('python@3.6.9:')
+ depends_on('py-setuptools', type=('build'))
depends_on('py-click@7.0:', type=('build', 'run'))
depends_on('py-matplotlib@3.2.1:', type=('build', 'run'))
depends_on('py-morphio@3.1.1:', type=('build', 'run'))
diff --git a/packages/py-pdb2pqr/package.py b/packages/py-pdb2pqr/package.py
index e219a785..53ab4405 100644
--- a/packages/py-pdb2pqr/package.py
+++ b/packages/py-pdb2pqr/package.py
@@ -28,6 +28,7 @@ class PyPdb2pqr(PythonPackage):
version('3.4.1', sha256='9e8cabd984f8e31f010bda0a3e81c87ad93f403d1fd36c787627e5134f7542ba')
depends_on('python@3.8:', type=('build','run'))
+ depends_on('py-setuptools', type=('build'))
depends_on('py-docutils@:0.18', type=('build','run'))
depends_on('py-mmcif-pdbx@1.1.2:', type=('build','run'))
depends_on('py-numpy', type=('build','run'))
diff --git a/packages/py-propka/package.py b/packages/py-propka/package.py
index 13c2dbf3..e7e5708d 100644
--- a/packages/py-propka/package.py
+++ b/packages/py-propka/package.py
@@ -27,3 +27,5 @@ class PyPropka(PythonPackage):
maintainers = ['richtesn', 'thielblz']
version('3.4.0', sha256='f19c2e145faa7eab000ce056a9058b8a30adba6970705047bb4fb7ba7570b020')
+
+ depends_on('py-setuptools', type=('build'))
diff --git a/packages/py-pynn/package.py b/packages/py-pynn/package.py
index 3d5db632..03f5a0d2 100644
--- a/packages/py-pynn/package.py
+++ b/packages/py-pynn/package.py
@@ -25,6 +25,8 @@ class PyPynn(PythonPackage):
depends_on('python@2.7:2.8,3.6:', when="@0.9.6")
depends_on('python@3.7:', when="@0.10.0:")
+ depends_on('py-setuptools', type=('build'))
+
depends_on('py-jinja2@2.7:', type=('build', 'run'))
depends_on('py-docutils@0.10:', type=('build', 'run'))
diff --git a/packages/py-pyswarms/package.py b/packages/py-pyswarms/package.py
index 15313932..a5712fc4 100644
--- a/packages/py-pyswarms/package.py
+++ b/packages/py-pyswarms/package.py
@@ -10,6 +10,7 @@ class PyPyswarms(PythonPackage):
version("1.3.0", sha256="1204aa9c332c662113e3c37d1b109906f4a0859b29ded80c1582dc66387ce34b")
+ depends_on("py-setuptools", type=("build"))
depends_on("py-scipy", type=("build", "run"))
depends_on("py-numpy", type=("build", "run"))
depends_on("py-matplotlib@1.3.1:", type=("build", "run"))
diff --git a/packages/py-quantities-scidash/package.py b/packages/py-quantities-scidash/package.py
index 1e115c92..c18a6d47 100644
--- a/packages/py-quantities-scidash/package.py
+++ b/packages/py-quantities-scidash/package.py
@@ -17,4 +17,5 @@ class PyQuantitiesScidash(PythonPackage):
version('0.12.4.3', sha256='c281383b989ae19bfe1526c09e452c82880b633a735f9494d8bb469412a33ea2')
depends_on('python@3.6.9:')
+ depends_on('py-setuptools', type=('build'))
depends_on('py-numpy@1.19:')
diff --git a/packages/py-sciunit/package.py b/packages/py-sciunit/package.py
index 41b029b3..a90cb012 100644
--- a/packages/py-sciunit/package.py
+++ b/packages/py-sciunit/package.py
@@ -17,6 +17,7 @@ class PySciunit(PythonPackage):
version('0.2.5.1', sha256='6148704f92a29c9d6de65ca9455b03ebe1f05101dae5e706aee2186e5a09fab3')
depends_on('python@3.6.9:')
+ depends_on('py-setuptools', type=('build'))
depends_on('py-beautifulsoup4', type=('build', 'run'))
depends_on('py-cerebrus@1.3.4', type=('build', 'run'))
depends_on('py-deepdiff', type=('build', 'run'))
diff --git a/packages/py-tvb-data/package.py b/packages/py-tvb-data/package.py
index 3f7dc670..c71ba71f 100644
--- a/packages/py-tvb-data/package.py
+++ b/packages/py-tvb-data/package.py
@@ -24,6 +24,7 @@ class PyTvbData(PythonPackage):
# setup_requires
depends_on('py-pip', type='build')
+ depends_on('py-setuptools', type=('build'))
# this is only a data holder package, thus no real python code exists inside.
@run_after('install')
--
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