From 5f657caf1a651122158a8d38ed972f5ec737dabe Mon Sep 17 00:00:00 2001
From: Charl Linssen <c.linssen@fz-juelich.de>
Date: Wed, 1 Mar 2023 18:08:22 +0100
Subject: [PATCH] Add NESTML
---
packages/py-nestml/package.py | 29 +++++++++++++++++++++++++++++
packages/py-odetoolbox/package.py | 26 ++++++++++++++++++++++++++
spack.yaml | 1 +
3 files changed, 56 insertions(+)
create mode 100644 packages/py-nestml/package.py
create mode 100644 packages/py-odetoolbox/package.py
diff --git a/packages/py-nestml/package.py b/packages/py-nestml/package.py
new file mode 100644
index 00000000..020fbcd7
--- /dev/null
+++ b/packages/py-nestml/package.py
@@ -0,0 +1,29 @@
+from spack import *
+
+
+class PyNestml(PythonPackage):
+ """A Python package for writing and generating code for (spiking) neuron
+ models and synaptic plasticity rules. Supports C++ code generation for
+ NEST Simulator as well as other target platforms.
+ """
+
+ homepage = 'https://nestml.readthedocs.org/'
+ url = 'https://pypi.org/packages/py3/N/NESTML/NESTML-5.2.0-py3-none-any.whl'
+ git = 'https://github.com/nest/nestml/'
+
+ maintainers = ['clinssen', 'pnbabu', 'jougs']
+
+ version('5.2.0', sha256='acb703bf9c7f70304bd5d547dccd6a6a219f8acb298a6412df779b808241eb14', expand=False)
+
+ depends_on('python@3.8:', type=('build', 'run'))
+ depends_on('py-pip', type='build')
+ depends_on('py-numpy', type=('build', 'run'))
+ depends_on('py-scipy', type=('build', 'run'))
+ depends_on('py-sympy', type=('build', 'run'))
+ depends_on('py-antlr4-python3-runtime', type=('build', 'run'))
+ depends_on('py-setuptools', type=('build', 'run'))
+ depends_on('py-jinja2', type=('build', 'run'))
+ depends_on('py-astropy', type=('build', 'run'))
+ depends_on('py-odetoolbox', type=('build', 'run'))
+ depends_on('nest', type=('build', 'run'))
+ depends_on('py-pytest', type='test')
diff --git a/packages/py-odetoolbox/package.py b/packages/py-odetoolbox/package.py
new file mode 100644
index 00000000..0f8265d1
--- /dev/null
+++ b/packages/py-odetoolbox/package.py
@@ -0,0 +1,26 @@
+from spack import *
+
+
+class PyOdetoolbox(PythonPackage):
+ """A Python package for the automatic selection and generation of
+ integration schemes for systems of ordinary differential equations
+ """
+
+ homepage = 'https://ode-toolbox.readthedocs.io'
+ url = 'https://pypi.org/packages/py3/o/odetoolbox/odetoolbox-2.5-py3-none-any.whl'
+ git = 'https://github.com/nest/ode-toolbox'
+
+ maintainers = ['clinssen']
+
+ version('2.5', sha256='947bbb289830dde60066106f5f628de2598a71129eafff8ec86317a0b5e8960e', expand=False)
+
+ depends_on('python@3.8:', type=('build', 'run'))
+ depends_on('py-pip', type='build')
+ depends_on('py-sympy@:1.4,1.7,1.8,1.9,1.11:', type=('build', 'run'))
+ depends_on('py-scipy', type=('build', 'run'))
+ depends_on('py-numpy@1.8.2:', type=('build', 'run'))
+ depends_on('py-cython', type=('build', 'run'))
+ depends_on('py-graphviz', type=('build', 'run'))
+ depends_on('py-matplotlib', type=('build', 'run'))
+ depends_on('py-setuptools', type=('build', 'run'))
+ depends_on('py-pytest', type='test')
diff --git a/spack.yaml b/spack.yaml
index 1f21a492..52ca0bf4 100644
--- a/spack.yaml
+++ b/spack.yaml
@@ -21,6 +21,7 @@ spack:
- py-tvb-framework@2.7.3.1
- pynn-brainscales@4.0-a4
- hxtorch@4.0-a4
+ - py-nestml@5.2.0
- py-neo@0.12.0
- py-hdmf@3.4.6
- py-pynwb@2.1.0
--
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