From 23680f378cb884e1ad198c56c50f0f9b676d9230 Mon Sep 17 00:00:00 2001
From: Johannes Hjorth <hjorth@kth.se>
Date: Sat, 6 Apr 2024 00:17:41 +0200
Subject: [PATCH] feat(py-snudda): add version 2.0.1
---
packages/py-snudda/package.py | 7 +++++--
spack.yaml | 2 +-
2 files changed, 6 insertions(+), 3 deletions(-)
diff --git a/packages/py-snudda/package.py b/packages/py-snudda/package.py
index 1678b1a0..67db0a32 100644
--- a/packages/py-snudda/package.py
+++ b/packages/py-snudda/package.py
@@ -5,11 +5,12 @@ class PySnudda(PythonPackage):
"""Snudda creates the connectivity for realistic networks of simulated neurons in silico in a bottom up fashion that can then be simulated using the NEURON software."""
homepage = "https://pypi.org/project/snudda/"
- pypi = "snudda/snudda-1.4.71.tar.gz"
+ pypi = "snudda/snudda-2.0.1.tar.gz"
maintainers = ["hjorth"]
- version("1.4.71", "563fcd816ad8a5c44b3185759e179c68", url="https://files.pythonhosted.org/packages/f7/d2/3f7b50f01f4d18578e15fb15deee9de0abebaa2006d0738714241d0359a5/snudda-1.4.71-py3-none-any.whl", expand=False)
+ version("2.0.1", "0d78f5ca2cfe728b216f980078d8558a")
+ version("1.4.71", "5871e4af5e1a011d26a22d7dc384638a")
version("1.4.0", "55f9b398b01b34bf3cec28c8a3aebc78")
version("1.3.2", "2306ec50acead5fd4f988ec373f19718", url="https://files.pythonhosted.org/packages/py3/s/snudda/snudda-1.2.9-py3-none-any.whl", expand=False)
@@ -31,6 +32,8 @@ class PySnudda(PythonPackage):
depends_on("py-psutil", type=("build","run"))
depends_on("py-cython", type=("build","run"))
depends_on("py-numba@0.53.1:", type=("build","run"))
+ depends_on("open3d+python", type=("build","run"), when="@2:")
+
# snudda tarballs in pypi do not include the tests/ dir: just use default spack tests for now
# @run_after('install')
diff --git a/spack.yaml b/spack.yaml
index 3b54982b..d66c7005 100644
--- a/spack.yaml
+++ b/spack.yaml
@@ -44,7 +44,7 @@ spack:
- py-quantities-scidash@0.12.4.3
- py-quantities@0.15.0
- py-siibra@0.4a66
- - py-snudda@1.4.71
+ - py-snudda@2.0.1
- py-spynnaker@7.0.0
- py-tvb-contrib@2.8.2
- py-tvb-data@2.8
--
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