From 1b903b86b62ab78ae2308d6ee001b4d0b6db164c Mon Sep 17 00:00:00 2001 From: Eleni Mathioulaki <emathioulaki@athenarc.gr> Date: Mon, 29 Jul 2024 11:57:52 +0200 Subject: [PATCH] fix: #56 --- create_JupyterLab_kernel.sh | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/create_JupyterLab_kernel.sh b/create_JupyterLab_kernel.sh index 0843a8ac..49313cce 100644 --- a/create_JupyterLab_kernel.sh +++ b/create_JupyterLab_kernel.sh @@ -41,6 +41,11 @@ mkdir -p \$R_LIBS_USER export R_LIBS=\$R_LIBS_USER:\$R_LIBS EOF +# ... and set the SYSTEMNAME env var, to use Spack commands inside the kernel +cat <<EOF >> $KERNEL_PATH/bin/env.sh +export SYSTEMNAME=ebrainslab +EOF + # (4) create startup script for python kernel cat $KERNEL_PATH/bin/env.sh > $KERNEL_PATH/bin/env_python.sh echo "python -m ipykernel_launcher -f \$@" >> $KERNEL_PATH/bin/env_python.sh -- GitLab