From 1b903b86b62ab78ae2308d6ee001b4d0b6db164c Mon Sep 17 00:00:00 2001
From: Eleni Mathioulaki <emathioulaki@athenarc.gr>
Date: Mon, 29 Jul 2024 11:57:52 +0200
Subject: [PATCH] fix: #56

---
 create_JupyterLab_kernel.sh | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/create_JupyterLab_kernel.sh b/create_JupyterLab_kernel.sh
index 0843a8ac..49313cce 100644
--- a/create_JupyterLab_kernel.sh
+++ b/create_JupyterLab_kernel.sh
@@ -41,6 +41,11 @@ mkdir -p \$R_LIBS_USER
 export R_LIBS=\$R_LIBS_USER:\$R_LIBS
 EOF
 
+# ... and set the SYSTEMNAME env var, to use Spack commands inside the kernel
+cat <<EOF >> $KERNEL_PATH/bin/env.sh
+export SYSTEMNAME=ebrainslab
+EOF
+
 # (4) create startup script for python kernel
 cat $KERNEL_PATH/bin/env.sh > $KERNEL_PATH/bin/env_python.sh
 echo "python -m ipykernel_launcher -f \$@" >> $KERNEL_PATH/bin/env_python.sh
-- 
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