diff --git a/config/application.tmpl b/config/application.tmpl index b82aed60ae4d5a7200a1eb307b1c34ab0fef0d27..5086566bd829d2e58d8921dbb52c888b2ab3d5aa 100644 --- a/config/application.tmpl +++ b/config/application.tmpl @@ -1,4 +1,4 @@ -# Configuration for the portal running inside a Docker container +# Configuration template for the portal running inside a Docker container spring: datasource: diff --git a/config/application.yml b/config/application.yml index de62b378fa6305e3614eb8bc199735c37b40a5ee..e1f4fd78cc195cacf3a2b0a47800fc547bfa48c5 100644 --- a/config/application.yml +++ b/config/application.yml @@ -1,4 +1,4 @@ -# Configuration for the portal running inside a Docker container +# ONLY FOR DEVELOPMENT - Configuration for the portal running inside a Docker container spring: datasource: diff --git a/pom.xml b/pom.xml index 2726b792b10f1c0eb89bde75ea2b578390aa8f4b..23c8733a7d86b1ed42b9bba7030b697cc5147351 100644 --- a/pom.xml +++ b/pom.xml @@ -3,13 +3,13 @@ xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd"> <modelVersion>4.0.0</modelVersion> - <groupId>org.hbp.mip</groupId> - <artifactId>backend-services</artifactId> + <groupId>eu.hbp.mip</groupId> + <artifactId>portal-backend</artifactId> <version>DOCKER_BUILD</version> <packaging>jar</packaging> - <name>backend-services</name> - <description>Medical Informatics Platform : backend restful services</description> + <name>portal-backend</name> + <description>Medical Informatics Platform - portal-backend</description> <parent> <groupId>org.springframework.boot</groupId> @@ -20,8 +20,8 @@ <properties> <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding> - <sonar.host.url>http://dockerhost:9000</sonar.host.url> - <sonar.projectName>MIP Backend</sonar.projectName> + <sonar.host.url>https://hbps1.chuv.ch/sonarqube/</sonar.host.url> + <sonar.projectName>MIP portal-backend</sonar.projectName> <sonar.sources>src/main/java/</sonar.sources> <java.version>1.8</java.version> <asciidoctor.maven.plugin.version>1.5.3</asciidoctor.maven.plugin.version> diff --git a/src/docker/build/Dockerfile b/src/docker/build/Dockerfile index b4318d788f65cf01d672e59aab38c69b6e4aa17f..2f62e5c9a4456109c38283a0e513022ab22e3aa0 100644 --- a/src/docker/build/Dockerfile +++ b/src/docker/build/Dockerfile @@ -1,5 +1,7 @@ FROM maven:3-jdk-8 +MAINTAINER mirco.nasuti@chuv.ch + COPY ./build-in-docker.sh /build-in-docker.sh VOLUME /opt/portal/ diff --git a/src/docker/run/Dockerfile b/src/docker/run/Dockerfile index f9c7d30b090aac13ba320651e1d6c97fe39d5662..cc8d0655438ed1f00d3cc8e0b68d2a99b8d35630 100644 --- a/src/docker/run/Dockerfile +++ b/src/docker/run/Dockerfile @@ -1,6 +1,8 @@ FROM java:openjdk-8u92-jdk-alpine -COPY ./target/backend-services-DOCKER_BUILD.jar backend.jar +MAINTAINER mirco.nasuti@chuv.ch + +COPY ./target/portal-backend-DOCKER_BUILD.jar backend.jar RUN apk add --update ca-certificates wget && rm -rf /var/cache/apk/* /tmp/* && update-ca-certificates RUN wget https://github.com/jwilder/dockerize/releases/download/v0.2.0/dockerize-linux-amd64-v0.2.0.tar.gz diff --git a/src/main/java/org/hbp/mip/MIPApplication.java b/src/main/java/eu/hbp/mip/MIPApplication.java similarity index 94% rename from src/main/java/org/hbp/mip/MIPApplication.java rename to src/main/java/eu/hbp/mip/MIPApplication.java index 51fd6f3ea36b5e273d70adc99e09659dd8e983b9..ef20c9f9ffd625d0ef82844897455f4f8326fc97 100644 --- a/src/main/java/org/hbp/mip/MIPApplication.java +++ b/src/main/java/eu/hbp/mip/MIPApplication.java @@ -2,7 +2,7 @@ * Created by mirco on 04.12.15. */ -package org.hbp.mip; +package eu.hbp.mip; import org.springframework.boot.SpringApplication; import org.springframework.boot.autoconfigure.SpringBootApplication; diff --git a/src/main/java/org/hbp/mip/configuration/PersistenceConfiguration.java b/src/main/java/eu/hbp/mip/configuration/PersistenceConfiguration.java similarity index 89% rename from src/main/java/org/hbp/mip/configuration/PersistenceConfiguration.java rename to src/main/java/eu/hbp/mip/configuration/PersistenceConfiguration.java index 35ce472e97215226e3bc4bd26e647d22d3498b2b..0a01e433fdee87eb61462fd1094ba28fa5964b99 100644 --- a/src/main/java/org/hbp/mip/configuration/PersistenceConfiguration.java +++ b/src/main/java/eu/hbp/mip/configuration/PersistenceConfiguration.java @@ -1,7 +1,7 @@ -package org.hbp.mip.configuration; +package eu.hbp.mip.configuration; +import eu.hbp.mip.utils.CSVUtil; import org.flywaydb.core.Flyway; -import org.hbp.mip.utils.CSVUtil; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.boot.orm.jpa.EntityScan; import org.springframework.context.annotation.Bean; @@ -19,8 +19,8 @@ import javax.sql.DataSource; */ @Configuration -@EnableJpaRepositories(value = "org.hbp.mip.repositories") -@EntityScan(basePackages = "org.hbp.mip.model") +@EnableJpaRepositories(value = "eu.hbp.mip.repositories") +@EntityScan(basePackages = "eu.hbp.mip.model") public class PersistenceConfiguration { @Autowired diff --git a/src/main/java/org/hbp/mip/configuration/SecurityConfiguration.java b/src/main/java/eu/hbp/mip/configuration/SecurityConfiguration.java similarity index 97% rename from src/main/java/org/hbp/mip/configuration/SecurityConfiguration.java rename to src/main/java/eu/hbp/mip/configuration/SecurityConfiguration.java index f8d78b38f2ab690d508c5b718bd8e19bf24213dd..7f076ab80ed44567525352ec42a78d0e39a85b16 100644 --- a/src/main/java/org/hbp/mip/configuration/SecurityConfiguration.java +++ b/src/main/java/eu/hbp/mip/configuration/SecurityConfiguration.java @@ -1,14 +1,14 @@ -package org.hbp.mip.configuration; +package eu.hbp.mip.configuration; import com.fasterxml.jackson.core.JsonProcessingException; import com.fasterxml.jackson.databind.ObjectMapper; +import eu.hbp.mip.controllers.ArticlesApi; +import eu.hbp.mip.utils.CORSFilter; import io.swagger.annotations.ApiParam; import org.apache.log4j.Logger; -import org.hbp.mip.controllers.ArticlesApi; -import org.hbp.mip.model.User; -import org.hbp.mip.repositories.UserRepository; -import org.hbp.mip.utils.CORSFilter; -import org.hbp.mip.utils.CustomLoginUrlAuthenticationEntryPoint; +import eu.hbp.mip.model.User; +import eu.hbp.mip.repositories.UserRepository; +import eu.hbp.mip.utils.CustomLoginUrlAuthenticationEntryPoint; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.beans.factory.annotation.Value; import org.springframework.boot.autoconfigure.security.oauth2.resource.ResourceServerProperties; diff --git a/src/main/java/org/hbp/mip/configuration/WebConfiguration.java b/src/main/java/eu/hbp/mip/configuration/WebConfiguration.java similarity index 91% rename from src/main/java/org/hbp/mip/configuration/WebConfiguration.java rename to src/main/java/eu/hbp/mip/configuration/WebConfiguration.java index 888fbd1e7e58c5725c60782c2c02aa220e3e33cc..96826c1a6df5bed220c62de30fc8f9ef82a74916 100644 --- a/src/main/java/org/hbp/mip/configuration/WebConfiguration.java +++ b/src/main/java/eu/hbp/mip/configuration/WebConfiguration.java @@ -1,4 +1,4 @@ -package org.hbp.mip.configuration; +package eu.hbp.mip.configuration; import org.springframework.context.annotation.Bean; import org.springframework.context.annotation.Configuration; @@ -29,7 +29,7 @@ public class WebConfiguration { public Docket documentation() { return new Docket(DocumentationType.SWAGGER_2) .select() - .apis(RequestHandlerSelectors.basePackage("org.hbp.mip.controllers")) + .apis(RequestHandlerSelectors.basePackage("eu.hbp.mip.controllers")) .build() .pathMapping("/") .apiInfo(metadata()); diff --git a/src/main/java/org/hbp/mip/controllers/AppsApi.java b/src/main/java/eu/hbp/mip/controllers/AppsApi.java similarity index 88% rename from src/main/java/org/hbp/mip/controllers/AppsApi.java rename to src/main/java/eu/hbp/mip/controllers/AppsApi.java index 351a2efb069e6b23831857e461a2a7db6f16a1a2..0bc610acac1c8fbc4f635f8535e318114403a314 100644 --- a/src/main/java/org/hbp/mip/controllers/AppsApi.java +++ b/src/main/java/eu/hbp/mip/controllers/AppsApi.java @@ -2,17 +2,17 @@ * Created by mirco on 20.05.16. */ -package org.hbp.mip.controllers; +package eu.hbp.mip.controllers; +import eu.hbp.mip.configuration.SecurityConfiguration; +import eu.hbp.mip.repositories.AppRepository; import io.swagger.annotations.*; import org.apache.log4j.Logger; -import org.hbp.mip.configuration.SecurityConfiguration; -import org.hbp.mip.model.App; -import org.hbp.mip.model.User; -import org.hbp.mip.model.Vote; -import org.hbp.mip.repositories.AppRepository; -import org.hbp.mip.repositories.UserRepository; -import org.hbp.mip.repositories.VoteRepository; +import eu.hbp.mip.model.App; +import eu.hbp.mip.model.User; +import eu.hbp.mip.model.Vote; +import eu.hbp.mip.repositories.UserRepository; +import eu.hbp.mip.repositories.VoteRepository; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.http.HttpStatus; import org.springframework.http.ResponseEntity; diff --git a/src/main/java/org/hbp/mip/controllers/ArticlesApi.java b/src/main/java/eu/hbp/mip/controllers/ArticlesApi.java similarity index 96% rename from src/main/java/org/hbp/mip/controllers/ArticlesApi.java rename to src/main/java/eu/hbp/mip/controllers/ArticlesApi.java index 83eed713395da1593b216eb44431370fdcd8d214..0b85ff02c62df94e66c2981f121018e983b7544c 100644 --- a/src/main/java/org/hbp/mip/controllers/ArticlesApi.java +++ b/src/main/java/eu/hbp/mip/controllers/ArticlesApi.java @@ -2,16 +2,16 @@ * Created by mirco on 04.12.15. */ -package org.hbp.mip.controllers; +package eu.hbp.mip.controllers; import com.github.slugify.Slugify; +import eu.hbp.mip.model.Article; import io.swagger.annotations.*; import org.apache.log4j.Logger; -import org.hbp.mip.configuration.SecurityConfiguration; -import org.hbp.mip.model.Article; -import org.hbp.mip.model.User; -import org.hbp.mip.repositories.ArticleRepository; +import eu.hbp.mip.configuration.SecurityConfiguration; +import eu.hbp.mip.model.User; +import eu.hbp.mip.repositories.ArticleRepository; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.http.HttpStatus; import org.springframework.http.ResponseEntity; diff --git a/src/main/java/org/hbp/mip/controllers/DatasetsApi.java b/src/main/java/eu/hbp/mip/controllers/DatasetsApi.java similarity index 90% rename from src/main/java/org/hbp/mip/controllers/DatasetsApi.java rename to src/main/java/eu/hbp/mip/controllers/DatasetsApi.java index 05fc11d6a8b93a573e0c5ffe149de1e2d2a9a1fc..e82c226bdd43b8fcc5a752e09901f7c4abdc641b 100644 --- a/src/main/java/org/hbp/mip/controllers/DatasetsApi.java +++ b/src/main/java/eu/hbp/mip/controllers/DatasetsApi.java @@ -2,12 +2,12 @@ * Created by mirco on 04.12.15. */ -package org.hbp.mip.controllers; +package eu.hbp.mip.controllers; import io.swagger.annotations.*; -import org.hbp.mip.model.Dataset; -import org.hbp.mip.repositories.DatasetRepository; +import eu.hbp.mip.model.Dataset; +import eu.hbp.mip.repositories.DatasetRepository; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.http.ResponseEntity; import org.springframework.web.bind.annotation.PathVariable; diff --git a/src/main/java/org/hbp/mip/controllers/ExperimentApi.java b/src/main/java/eu/hbp/mip/controllers/ExperimentApi.java similarity index 97% rename from src/main/java/org/hbp/mip/controllers/ExperimentApi.java rename to src/main/java/eu/hbp/mip/controllers/ExperimentApi.java index 99275314da2f0fdd068157e99e927b57aa949ca8..c472f0760e88238b60a05b1577c2d9f23143abe0 100644 --- a/src/main/java/org/hbp/mip/controllers/ExperimentApi.java +++ b/src/main/java/eu/hbp/mip/controllers/ExperimentApi.java @@ -1,16 +1,16 @@ -package org.hbp.mip.controllers; +package eu.hbp.mip.controllers; import com.google.common.collect.Lists; import com.google.gson.*; +import eu.hbp.mip.configuration.SecurityConfiguration; +import eu.hbp.mip.model.User; +import eu.hbp.mip.utils.HTTPUtil; import io.swagger.annotations.*; import org.apache.log4j.Logger; -import org.hbp.mip.configuration.SecurityConfiguration; -import org.hbp.mip.model.Experiment; -import org.hbp.mip.model.User; -import org.hbp.mip.repositories.ExperimentRepository; -import org.hbp.mip.repositories.ModelRepository; -import org.hbp.mip.utils.HTTPUtil; -import org.hbp.mip.utils.JSONUtil; +import eu.hbp.mip.model.Experiment; +import eu.hbp.mip.repositories.ExperimentRepository; +import eu.hbp.mip.repositories.ModelRepository; +import eu.hbp.mip.utils.JSONUtil; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.beans.factory.annotation.Value; import org.springframework.http.HttpStatus; diff --git a/src/main/java/org/hbp/mip/controllers/GroupsApi.java b/src/main/java/eu/hbp/mip/controllers/GroupsApi.java similarity index 91% rename from src/main/java/org/hbp/mip/controllers/GroupsApi.java rename to src/main/java/eu/hbp/mip/controllers/GroupsApi.java index 48574e48cec79d8a23005db34c3125521d7f9c7a..ead40a093f1109ee7d217449483045c11a166962 100644 --- a/src/main/java/org/hbp/mip/controllers/GroupsApi.java +++ b/src/main/java/eu/hbp/mip/controllers/GroupsApi.java @@ -2,14 +2,14 @@ * Created by mirco on 04.12.15. */ -package org.hbp.mip.controllers; +package eu.hbp.mip.controllers; import io.swagger.annotations.Api; import io.swagger.annotations.ApiOperation; import io.swagger.annotations.ApiResponse; import io.swagger.annotations.ApiResponses; -import org.hbp.mip.model.Group; -import org.hbp.mip.repositories.GroupRepository; +import eu.hbp.mip.model.Group; +import eu.hbp.mip.repositories.GroupRepository; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.http.ResponseEntity; import org.springframework.web.bind.annotation.RequestMapping; diff --git a/src/main/java/org/hbp/mip/controllers/ModelsApi.java b/src/main/java/eu/hbp/mip/controllers/ModelsApi.java similarity index 95% rename from src/main/java/org/hbp/mip/controllers/ModelsApi.java rename to src/main/java/eu/hbp/mip/controllers/ModelsApi.java index 2570b9a6770cd6b264549d472528ec55fd517e34..31d736d2a04ad60c7add4afafb1580a2d3466006 100644 --- a/src/main/java/org/hbp/mip/controllers/ModelsApi.java +++ b/src/main/java/eu/hbp/mip/controllers/ModelsApi.java @@ -2,18 +2,21 @@ * Created by mirco on 04.12.15. */ -package org.hbp.mip.controllers; +package eu.hbp.mip.controllers; import com.github.slugify.Slugify; +import eu.hbp.mip.configuration.SecurityConfiguration; +import eu.hbp.mip.model.Filter; +import eu.hbp.mip.model.Model; +import eu.hbp.mip.model.User; +import eu.hbp.mip.model.Variable; +import eu.hbp.mip.repositories.ConfigRepository; +import eu.hbp.mip.repositories.ModelRepository; +import eu.hbp.mip.utils.CSVUtil; import io.swagger.annotations.*; import org.apache.log4j.Logger; -import org.hbp.mip.configuration.SecurityConfiguration; -import org.hbp.mip.model.*; -import org.hbp.mip.repositories.ConfigRepository; -import org.hbp.mip.repositories.DatasetRepository; -import org.hbp.mip.repositories.ModelRepository; -import org.hbp.mip.repositories.QueryRepository; -import org.hbp.mip.utils.CSVUtil; +import eu.hbp.mip.repositories.DatasetRepository; +import eu.hbp.mip.repositories.QueryRepository; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.http.HttpStatus; import org.springframework.http.ResponseEntity; diff --git a/src/main/java/org/hbp/mip/controllers/RequestsApi.java b/src/main/java/eu/hbp/mip/controllers/RequestsApi.java similarity index 90% rename from src/main/java/org/hbp/mip/controllers/RequestsApi.java rename to src/main/java/eu/hbp/mip/controllers/RequestsApi.java index 76527eba6de906c48a50823ed348c4388cfc2dc0..c3ace60ee80811a7339f6a6e871917c7b87dce1d 100644 --- a/src/main/java/org/hbp/mip/controllers/RequestsApi.java +++ b/src/main/java/eu/hbp/mip/controllers/RequestsApi.java @@ -2,12 +2,12 @@ * Created by mirco on 18.01.16. */ -package org.hbp.mip.controllers; +package eu.hbp.mip.controllers; import io.swagger.annotations.*; -import org.hbp.mip.model.Dataset; -import org.hbp.mip.model.Query; -import org.hbp.mip.utils.CSVUtil; +import eu.hbp.mip.model.Dataset; +import eu.hbp.mip.model.Query; +import eu.hbp.mip.utils.CSVUtil; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.http.ResponseEntity; import org.springframework.web.bind.annotation.RequestBody; diff --git a/src/main/java/org/hbp/mip/controllers/StatsApi.java b/src/main/java/eu/hbp/mip/controllers/StatsApi.java similarity index 87% rename from src/main/java/org/hbp/mip/controllers/StatsApi.java rename to src/main/java/eu/hbp/mip/controllers/StatsApi.java index 3f6883f28f9d19e7887519105e9a07bd58d5679d..4dd13b39d0710d02675b15fe9a5163647c3256bd 100644 --- a/src/main/java/org/hbp/mip/controllers/StatsApi.java +++ b/src/main/java/eu/hbp/mip/controllers/StatsApi.java @@ -2,16 +2,16 @@ * Created by mirco on 18.01.16. */ -package org.hbp.mip.controllers; +package eu.hbp.mip.controllers; +import eu.hbp.mip.repositories.VariableRepository; import io.swagger.annotations.Api; import io.swagger.annotations.ApiOperation; import io.swagger.annotations.ApiResponse; import io.swagger.annotations.ApiResponses; -import org.hbp.mip.model.GeneralStats; -import org.hbp.mip.repositories.ArticleRepository; -import org.hbp.mip.repositories.UserRepository; -import org.hbp.mip.repositories.VariableRepository; +import eu.hbp.mip.model.GeneralStats; +import eu.hbp.mip.repositories.ArticleRepository; +import eu.hbp.mip.repositories.UserRepository; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.http.ResponseEntity; import org.springframework.web.bind.annotation.RequestMapping; diff --git a/src/main/java/org/hbp/mip/controllers/UsersApi.java b/src/main/java/eu/hbp/mip/controllers/UsersApi.java similarity index 91% rename from src/main/java/org/hbp/mip/controllers/UsersApi.java rename to src/main/java/eu/hbp/mip/controllers/UsersApi.java index eabeffca1e196a3201a9068b46c1dc395946f2fb..7859a669a8a0ba0f955f22f4096ae4dc8a17f5ba 100644 --- a/src/main/java/org/hbp/mip/controllers/UsersApi.java +++ b/src/main/java/eu/hbp/mip/controllers/UsersApi.java @@ -2,11 +2,11 @@ * Created by mirco on 14.01.16. */ -package org.hbp.mip.controllers; +package eu.hbp.mip.controllers; import io.swagger.annotations.*; -import org.hbp.mip.model.User; -import org.hbp.mip.repositories.UserRepository; +import eu.hbp.mip.model.User; +import eu.hbp.mip.repositories.UserRepository; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.http.ResponseEntity; import org.springframework.web.bind.annotation.PathVariable; diff --git a/src/main/java/org/hbp/mip/controllers/VariablesApi.java b/src/main/java/eu/hbp/mip/controllers/VariablesApi.java similarity index 95% rename from src/main/java/org/hbp/mip/controllers/VariablesApi.java rename to src/main/java/eu/hbp/mip/controllers/VariablesApi.java index b5f2d72f2f5ea151070fb2598007f22a49b475f6..77cfc404a813919b793dd1498bb8506ddd28a304 100644 --- a/src/main/java/org/hbp/mip/controllers/VariablesApi.java +++ b/src/main/java/eu/hbp/mip/controllers/VariablesApi.java @@ -2,13 +2,13 @@ * Created by mirco on 04.12.15. */ -package org.hbp.mip.controllers; +package eu.hbp.mip.controllers; +import eu.hbp.mip.repositories.VariableRepository; import io.swagger.annotations.*; -import org.hbp.mip.model.Value; -import org.hbp.mip.model.Variable; -import org.hbp.mip.repositories.VariableRepository; +import eu.hbp.mip.model.Value; +import eu.hbp.mip.model.Variable; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.http.ResponseEntity; import org.springframework.web.bind.annotation.*; diff --git a/src/main/java/org/hbp/mip/model/App.java b/src/main/java/eu/hbp/mip/model/App.java similarity index 98% rename from src/main/java/org/hbp/mip/model/App.java rename to src/main/java/eu/hbp/mip/model/App.java index c328c36ca8330b538d66028cd085407959a4b5ca..8629865a864ea689b5b81e54b6359cb7fa12c2e1 100644 --- a/src/main/java/org/hbp/mip/model/App.java +++ b/src/main/java/eu/hbp/mip/model/App.java @@ -2,7 +2,7 @@ * Created by mirco on 20.05.16. */ -package org.hbp.mip.model; +package eu.hbp.mip.model; import com.fasterxml.jackson.annotation.JsonIgnoreProperties; import com.fasterxml.jackson.annotation.JsonInclude; diff --git a/src/main/java/org/hbp/mip/model/Article.java b/src/main/java/eu/hbp/mip/model/Article.java similarity index 99% rename from src/main/java/org/hbp/mip/model/Article.java rename to src/main/java/eu/hbp/mip/model/Article.java index b7821db0ca22566bb2aff06a847d566fff0a40e7..508ad89c48e06f1314b0f1dfa0166d962e67120f 100644 --- a/src/main/java/org/hbp/mip/model/Article.java +++ b/src/main/java/eu/hbp/mip/model/Article.java @@ -2,7 +2,7 @@ * Created by mirco on 04.12.15. */ -package org.hbp.mip.model; +package eu.hbp.mip.model; import com.fasterxml.jackson.annotation.JsonInclude; import com.fasterxml.jackson.annotation.JsonProperty; diff --git a/src/main/java/org/hbp/mip/model/Config.java b/src/main/java/eu/hbp/mip/model/Config.java similarity index 98% rename from src/main/java/org/hbp/mip/model/Config.java rename to src/main/java/eu/hbp/mip/model/Config.java index 08bed89798cda8f97015ae62717a7a2300b7126d..d950d5074f2e231533c1047f16219ecb5205a065 100644 --- a/src/main/java/org/hbp/mip/model/Config.java +++ b/src/main/java/eu/hbp/mip/model/Config.java @@ -2,7 +2,7 @@ * Created by mirco on 25.02.16. */ -package org.hbp.mip.model; +package eu.hbp.mip.model; import com.fasterxml.jackson.annotation.JsonIgnoreProperties; import io.swagger.annotations.ApiModel; diff --git a/src/main/java/org/hbp/mip/model/Dataset.java b/src/main/java/eu/hbp/mip/model/Dataset.java similarity index 98% rename from src/main/java/org/hbp/mip/model/Dataset.java rename to src/main/java/eu/hbp/mip/model/Dataset.java index 023cecf06d6738dc31f7cfde5edb2dccf2dbd09f..f0dab7c4b2fb91a19372ec738fef4de5929c9594 100644 --- a/src/main/java/org/hbp/mip/model/Dataset.java +++ b/src/main/java/eu/hbp/mip/model/Dataset.java @@ -2,7 +2,7 @@ * Created by mirco on 04.12.15. */ -package org.hbp.mip.model; +package eu.hbp.mip.model; import com.fasterxml.jackson.annotation.JsonInclude; import io.swagger.annotations.ApiModel; diff --git a/src/main/java/org/hbp/mip/model/ExaremeQueryElement.java b/src/main/java/eu/hbp/mip/model/ExaremeQueryElement.java similarity index 96% rename from src/main/java/org/hbp/mip/model/ExaremeQueryElement.java rename to src/main/java/eu/hbp/mip/model/ExaremeQueryElement.java index dba6d6269da25986a0d39028d927f61563b39ae8..0b7005c19dd985d4ae639768053df2c61f836ac7 100644 --- a/src/main/java/org/hbp/mip/model/ExaremeQueryElement.java +++ b/src/main/java/eu/hbp/mip/model/ExaremeQueryElement.java @@ -1,4 +1,4 @@ -package org.hbp.mip.model; +package eu.hbp.mip.model; import com.fasterxml.jackson.annotation.JsonInclude; import io.swagger.annotations.ApiModel; diff --git a/src/main/java/org/hbp/mip/model/Experiment.java b/src/main/java/eu/hbp/mip/model/Experiment.java similarity index 99% rename from src/main/java/org/hbp/mip/model/Experiment.java rename to src/main/java/eu/hbp/mip/model/Experiment.java index f42ffbd6cbc11aa6e297bde4adfdc383b23ea5dd..9fac6af1717a4d7fc98de2cf4ca637d9048d949a 100644 --- a/src/main/java/org/hbp/mip/model/Experiment.java +++ b/src/main/java/eu/hbp/mip/model/Experiment.java @@ -1,4 +1,4 @@ -package org.hbp.mip.model; +package eu.hbp.mip.model; import com.google.gson.Gson; import com.google.gson.GsonBuilder; diff --git a/src/main/java/org/hbp/mip/model/Filter.java b/src/main/java/eu/hbp/mip/model/Filter.java similarity index 98% rename from src/main/java/org/hbp/mip/model/Filter.java rename to src/main/java/eu/hbp/mip/model/Filter.java index 27af1d69c9b26fd1475d1395f1e3a6432c86bf81..e55b405e95e36cffb75dfbafcb4abf1c077ecdc5 100644 --- a/src/main/java/org/hbp/mip/model/Filter.java +++ b/src/main/java/eu/hbp/mip/model/Filter.java @@ -2,7 +2,7 @@ * Created by mirco on 04.12.15. */ -package org.hbp.mip.model; +package eu.hbp.mip.model; import com.fasterxml.jackson.annotation.JsonIgnoreProperties; import com.fasterxml.jackson.annotation.JsonInclude; diff --git a/src/main/java/org/hbp/mip/model/GeneralStats.java b/src/main/java/eu/hbp/mip/model/GeneralStats.java similarity index 96% rename from src/main/java/org/hbp/mip/model/GeneralStats.java rename to src/main/java/eu/hbp/mip/model/GeneralStats.java index b9366c013e3e2913a220e598cfe6c3264d231b6a..8953828d4fa4313d6ca51f05dce781ee3f0c2190 100644 --- a/src/main/java/org/hbp/mip/model/GeneralStats.java +++ b/src/main/java/eu/hbp/mip/model/GeneralStats.java @@ -2,7 +2,7 @@ * Created by mirco on 03.02.16. */ -package org.hbp.mip.model; +package eu.hbp.mip.model; import com.fasterxml.jackson.annotation.JsonInclude; import io.swagger.annotations.ApiModel; diff --git a/src/main/java/org/hbp/mip/model/Group.java b/src/main/java/eu/hbp/mip/model/Group.java similarity index 98% rename from src/main/java/org/hbp/mip/model/Group.java rename to src/main/java/eu/hbp/mip/model/Group.java index 32cf44f662107d113c214901ee77113d6e434d85..a77de20394660978c72920dc7eb37f2a7d18f52e 100644 --- a/src/main/java/org/hbp/mip/model/Group.java +++ b/src/main/java/eu/hbp/mip/model/Group.java @@ -2,7 +2,7 @@ * Created by mirco on 04.12.15. */ -package org.hbp.mip.model; +package eu.hbp.mip.model; import com.fasterxml.jackson.annotation.JsonIgnoreProperties; import com.fasterxml.jackson.annotation.JsonInclude; diff --git a/src/main/java/org/hbp/mip/model/Model.java b/src/main/java/eu/hbp/mip/model/Model.java similarity index 94% rename from src/main/java/org/hbp/mip/model/Model.java rename to src/main/java/eu/hbp/mip/model/Model.java index fb871152fe562a4fab41a0b7def52123cd26394b..d788436a6d9a5b0c42fa1b616cdcc3be443ed1a0 100644 --- a/src/main/java/org/hbp/mip/model/Model.java +++ b/src/main/java/eu/hbp/mip/model/Model.java @@ -2,7 +2,7 @@ * Created by mirco on 04.12.15. */ -package org.hbp.mip.model; +package eu.hbp.mip.model; import com.fasterxml.jackson.annotation.JsonInclude; import com.google.gson.annotations.Expose; @@ -36,7 +36,7 @@ public class Model { @ManyToOne @Cascade(CascadeType.SAVE_UPDATE) - private Query query = null; + private eu.hbp.mip.model.Query query = null; @ManyToOne @Cascade(CascadeType.SAVE_UPDATE) @@ -92,11 +92,11 @@ public class Model { } - public Query getQuery() { + public eu.hbp.mip.model.Query getQuery() { return query; } - public void setQuery(Query query) { + public void setQuery(eu.hbp.mip.model.Query query) { this.query = query; } diff --git a/src/main/java/org/hbp/mip/model/Query.java b/src/main/java/eu/hbp/mip/model/Query.java similarity index 99% rename from src/main/java/org/hbp/mip/model/Query.java rename to src/main/java/eu/hbp/mip/model/Query.java index fddb0c7a7c68ffb5a79c733032d9a36c4564008b..61b979ff4400e709d8079ff034317dc1d869ce10 100644 --- a/src/main/java/org/hbp/mip/model/Query.java +++ b/src/main/java/eu/hbp/mip/model/Query.java @@ -2,7 +2,7 @@ * Created by mirco on 04.12.15. */ -package org.hbp.mip.model; +package eu.hbp.mip.model; import com.fasterxml.jackson.annotation.JsonIgnoreProperties; import com.fasterxml.jackson.annotation.JsonInclude; diff --git a/src/main/java/org/hbp/mip/model/Tag.java b/src/main/java/eu/hbp/mip/model/Tag.java similarity index 95% rename from src/main/java/org/hbp/mip/model/Tag.java rename to src/main/java/eu/hbp/mip/model/Tag.java index 6619bd75f57a66dfe66446e4f710b4d515663199..e09f86fc2666fb73598629a499da2020a2bf542c 100644 --- a/src/main/java/org/hbp/mip/model/Tag.java +++ b/src/main/java/eu/hbp/mip/model/Tag.java @@ -2,7 +2,7 @@ * Created by mirco on 04.12.15. */ -package org.hbp.mip.model; +package eu.hbp.mip.model; import com.fasterxml.jackson.annotation.JsonInclude; import io.swagger.annotations.ApiModel; diff --git a/src/main/java/org/hbp/mip/model/User.java b/src/main/java/eu/hbp/mip/model/User.java similarity index 99% rename from src/main/java/org/hbp/mip/model/User.java rename to src/main/java/eu/hbp/mip/model/User.java index 7d12a47f5265f9f4aebd58463b7dcde0c93140b1..11b6b8fd477e55bef26e6f0f5b66fdfe210cebb6 100644 --- a/src/main/java/org/hbp/mip/model/User.java +++ b/src/main/java/eu/hbp/mip/model/User.java @@ -2,7 +2,7 @@ * Created by mirco on 04.12.15. */ -package org.hbp.mip.model; +package eu.hbp.mip.model; import com.fasterxml.jackson.annotation.JsonIgnoreProperties; import com.fasterxml.jackson.annotation.JsonInclude; diff --git a/src/main/java/org/hbp/mip/model/Value.java b/src/main/java/eu/hbp/mip/model/Value.java similarity index 96% rename from src/main/java/org/hbp/mip/model/Value.java rename to src/main/java/eu/hbp/mip/model/Value.java index b9c2705c59e3ecd524a4d4b289a478aadf02601e..17ca49d52b29ae99359963cf1f07a5effb3f4b1c 100644 --- a/src/main/java/org/hbp/mip/model/Value.java +++ b/src/main/java/eu/hbp/mip/model/Value.java @@ -2,7 +2,7 @@ * Created by mirco on 04.12.15. */ -package org.hbp.mip.model; +package eu.hbp.mip.model; import com.fasterxml.jackson.annotation.JsonInclude; import io.swagger.annotations.ApiModel; diff --git a/src/main/java/org/hbp/mip/model/Variable.java b/src/main/java/eu/hbp/mip/model/Variable.java similarity index 99% rename from src/main/java/org/hbp/mip/model/Variable.java rename to src/main/java/eu/hbp/mip/model/Variable.java index 2bc6a37c8637930c0ea1466633250bfb467ac9b2..1f8d58bd157bb3fb9ee9d12adcea2bf4b4a8a068 100644 --- a/src/main/java/org/hbp/mip/model/Variable.java +++ b/src/main/java/eu/hbp/mip/model/Variable.java @@ -2,7 +2,7 @@ * Created by mirco on 04.12.15. */ -package org.hbp.mip.model; +package eu.hbp.mip.model; import com.fasterxml.jackson.annotation.JsonIgnoreProperties; import com.fasterxml.jackson.annotation.JsonInclude; diff --git a/src/main/java/org/hbp/mip/model/Vote.java b/src/main/java/eu/hbp/mip/model/Vote.java similarity index 97% rename from src/main/java/org/hbp/mip/model/Vote.java rename to src/main/java/eu/hbp/mip/model/Vote.java index b9981a8e92a96092b8c0fa8e4e833f70846dedfd..8c79537840d81cb09134132200ac47a49a36b09a 100644 --- a/src/main/java/org/hbp/mip/model/Vote.java +++ b/src/main/java/eu/hbp/mip/model/Vote.java @@ -2,7 +2,7 @@ * Created by mirco on 24.05.16. */ -package org.hbp.mip.model; +package eu.hbp.mip.model; import com.fasterxml.jackson.annotation.JsonInclude; import io.swagger.annotations.ApiModel; diff --git a/src/main/java/org/hbp/mip/repositories/AppRepository.java b/src/main/java/eu/hbp/mip/repositories/AppRepository.java similarity index 73% rename from src/main/java/org/hbp/mip/repositories/AppRepository.java rename to src/main/java/eu/hbp/mip/repositories/AppRepository.java index ba00367afe2b6419d61f1a810b5f21acfb7596f6..949e7b3f6efdd94897376a3f1b25aa18bbd5bc76 100644 --- a/src/main/java/org/hbp/mip/repositories/AppRepository.java +++ b/src/main/java/eu/hbp/mip/repositories/AppRepository.java @@ -1,6 +1,6 @@ -package org.hbp.mip.repositories; +package eu.hbp.mip.repositories; -import org.hbp.mip.model.App; +import eu.hbp.mip.model.App; import org.springframework.data.repository.CrudRepository; /** diff --git a/src/main/java/org/hbp/mip/repositories/ArticleRepository.java b/src/main/java/eu/hbp/mip/repositories/ArticleRepository.java similarity index 77% rename from src/main/java/org/hbp/mip/repositories/ArticleRepository.java rename to src/main/java/eu/hbp/mip/repositories/ArticleRepository.java index b27ecfaa4d7d44a66d7f80e065f06df545a69dfd..4ad0e3942b533b524700868428a05dc9941ffe40 100644 --- a/src/main/java/org/hbp/mip/repositories/ArticleRepository.java +++ b/src/main/java/eu/hbp/mip/repositories/ArticleRepository.java @@ -1,7 +1,7 @@ -package org.hbp.mip.repositories; +package eu.hbp.mip.repositories; -import org.hbp.mip.model.Article; -import org.hbp.mip.model.User; +import eu.hbp.mip.model.Article; +import eu.hbp.mip.model.User; import org.springframework.data.repository.CrudRepository; /** diff --git a/src/main/java/org/hbp/mip/repositories/ConfigRepository.java b/src/main/java/eu/hbp/mip/repositories/ConfigRepository.java similarity index 72% rename from src/main/java/org/hbp/mip/repositories/ConfigRepository.java rename to src/main/java/eu/hbp/mip/repositories/ConfigRepository.java index f54f379144b1769eda2bca8db2b9be623c98fd06..deb286150c0ba9c7833b4dfa66a61d3890c011c4 100644 --- a/src/main/java/org/hbp/mip/repositories/ConfigRepository.java +++ b/src/main/java/eu/hbp/mip/repositories/ConfigRepository.java @@ -1,6 +1,6 @@ -package org.hbp.mip.repositories; +package eu.hbp.mip.repositories; -import org.hbp.mip.model.Config; +import eu.hbp.mip.model.Config; import org.springframework.data.repository.CrudRepository; /** diff --git a/src/main/java/org/hbp/mip/repositories/DatasetRepository.java b/src/main/java/eu/hbp/mip/repositories/DatasetRepository.java similarity index 72% rename from src/main/java/org/hbp/mip/repositories/DatasetRepository.java rename to src/main/java/eu/hbp/mip/repositories/DatasetRepository.java index 53883eb21f504b1fcd90178b44d1105785129fba..7c6da1e9745b8a144296d51a5d85434111213b96 100644 --- a/src/main/java/org/hbp/mip/repositories/DatasetRepository.java +++ b/src/main/java/eu/hbp/mip/repositories/DatasetRepository.java @@ -1,6 +1,6 @@ -package org.hbp.mip.repositories; +package eu.hbp.mip.repositories; -import org.hbp.mip.model.Dataset; +import eu.hbp.mip.model.Dataset; import org.springframework.data.repository.CrudRepository; /** diff --git a/src/main/java/org/hbp/mip/repositories/ExperimentRepository.java b/src/main/java/eu/hbp/mip/repositories/ExperimentRepository.java similarity index 75% rename from src/main/java/org/hbp/mip/repositories/ExperimentRepository.java rename to src/main/java/eu/hbp/mip/repositories/ExperimentRepository.java index 3815879beab40747df7fba83f2a96d950af3ece9..6609d6450af5b72b300ec529c41cff7153c01aef 100644 --- a/src/main/java/org/hbp/mip/repositories/ExperimentRepository.java +++ b/src/main/java/eu/hbp/mip/repositories/ExperimentRepository.java @@ -1,7 +1,7 @@ -package org.hbp.mip.repositories; +package eu.hbp.mip.repositories; -import org.hbp.mip.model.Experiment; -import org.hbp.mip.model.User; +import eu.hbp.mip.model.Experiment; +import eu.hbp.mip.model.User; import org.springframework.data.repository.CrudRepository; import java.util.UUID; diff --git a/src/main/java/org/hbp/mip/repositories/FilterRepository.java b/src/main/java/eu/hbp/mip/repositories/FilterRepository.java similarity index 72% rename from src/main/java/org/hbp/mip/repositories/FilterRepository.java rename to src/main/java/eu/hbp/mip/repositories/FilterRepository.java index 7f4a1556924d00bbd33fd92135169f176fe749e6..d8d8e5ff440331608f6bdb7f368f209c27e49d06 100644 --- a/src/main/java/org/hbp/mip/repositories/FilterRepository.java +++ b/src/main/java/eu/hbp/mip/repositories/FilterRepository.java @@ -1,6 +1,6 @@ -package org.hbp.mip.repositories; +package eu.hbp.mip.repositories; -import org.hbp.mip.model.Filter; +import eu.hbp.mip.model.Filter; import org.springframework.data.repository.CrudRepository; /** diff --git a/src/main/java/org/hbp/mip/repositories/GroupRepository.java b/src/main/java/eu/hbp/mip/repositories/GroupRepository.java similarity index 72% rename from src/main/java/org/hbp/mip/repositories/GroupRepository.java rename to src/main/java/eu/hbp/mip/repositories/GroupRepository.java index 548653269f2c788bef529e1748b4b9fdca04126d..ab6839f71bb973de40cd139d10381ebc4a927d49 100644 --- a/src/main/java/org/hbp/mip/repositories/GroupRepository.java +++ b/src/main/java/eu/hbp/mip/repositories/GroupRepository.java @@ -1,6 +1,6 @@ -package org.hbp.mip.repositories; +package eu.hbp.mip.repositories; -import org.hbp.mip.model.Group; +import eu.hbp.mip.model.Group; import org.springframework.data.repository.CrudRepository; /** diff --git a/src/main/java/org/hbp/mip/repositories/ModelRepository.java b/src/main/java/eu/hbp/mip/repositories/ModelRepository.java similarity index 79% rename from src/main/java/org/hbp/mip/repositories/ModelRepository.java rename to src/main/java/eu/hbp/mip/repositories/ModelRepository.java index 9da1df5bd11936471fde140ce86b60689c5a499c..de44afc6cff7b1abf2239cd2b6fd78e31ef59d18 100644 --- a/src/main/java/org/hbp/mip/repositories/ModelRepository.java +++ b/src/main/java/eu/hbp/mip/repositories/ModelRepository.java @@ -1,7 +1,7 @@ -package org.hbp.mip.repositories; +package eu.hbp.mip.repositories; -import org.hbp.mip.model.Model; -import org.hbp.mip.model.User; +import eu.hbp.mip.model.Model; +import eu.hbp.mip.model.User; import org.springframework.data.repository.CrudRepository; /** diff --git a/src/main/java/org/hbp/mip/repositories/QueryRepository.java b/src/main/java/eu/hbp/mip/repositories/QueryRepository.java similarity index 72% rename from src/main/java/org/hbp/mip/repositories/QueryRepository.java rename to src/main/java/eu/hbp/mip/repositories/QueryRepository.java index 44dc9527b480447e28205322e87e7a962f09f285..f0b95d39c4c3a480fe2bec20ce75e46361889e71 100644 --- a/src/main/java/org/hbp/mip/repositories/QueryRepository.java +++ b/src/main/java/eu/hbp/mip/repositories/QueryRepository.java @@ -1,6 +1,6 @@ -package org.hbp.mip.repositories; +package eu.hbp.mip.repositories; -import org.hbp.mip.model.Query; +import eu.hbp.mip.model.Query; import org.springframework.data.repository.CrudRepository; /** diff --git a/src/main/java/org/hbp/mip/repositories/TagRepository.java b/src/main/java/eu/hbp/mip/repositories/TagRepository.java similarity index 73% rename from src/main/java/org/hbp/mip/repositories/TagRepository.java rename to src/main/java/eu/hbp/mip/repositories/TagRepository.java index 155d65d17170b6171170a3b41ae12f981cf9fbf0..4edb4090e0336ac034daf245d5ca3bb084a6f5ae 100644 --- a/src/main/java/org/hbp/mip/repositories/TagRepository.java +++ b/src/main/java/eu/hbp/mip/repositories/TagRepository.java @@ -1,6 +1,6 @@ -package org.hbp.mip.repositories; +package eu.hbp.mip.repositories; -import org.hbp.mip.model.Tag; +import eu.hbp.mip.model.Tag; import org.springframework.data.repository.CrudRepository; /** diff --git a/src/main/java/org/hbp/mip/repositories/UserRepository.java b/src/main/java/eu/hbp/mip/repositories/UserRepository.java similarity index 73% rename from src/main/java/org/hbp/mip/repositories/UserRepository.java rename to src/main/java/eu/hbp/mip/repositories/UserRepository.java index 04338433fe84ada90f446232715c71d63ba904f4..3a0db7ee31cf9c56cdd68397d641f4a71e8c37a2 100644 --- a/src/main/java/org/hbp/mip/repositories/UserRepository.java +++ b/src/main/java/eu/hbp/mip/repositories/UserRepository.java @@ -1,6 +1,6 @@ -package org.hbp.mip.repositories; +package eu.hbp.mip.repositories; -import org.hbp.mip.model.User; +import eu.hbp.mip.model.User; import org.springframework.data.repository.CrudRepository; /** diff --git a/src/main/java/org/hbp/mip/repositories/ValueRepository.java b/src/main/java/eu/hbp/mip/repositories/ValueRepository.java similarity index 72% rename from src/main/java/org/hbp/mip/repositories/ValueRepository.java rename to src/main/java/eu/hbp/mip/repositories/ValueRepository.java index c3b088462874f72489c507576aa9fb9ce5d221fc..b41574d6082542ec1539f8e14203e61eb27e0614 100644 --- a/src/main/java/org/hbp/mip/repositories/ValueRepository.java +++ b/src/main/java/eu/hbp/mip/repositories/ValueRepository.java @@ -1,6 +1,6 @@ -package org.hbp.mip.repositories; +package eu.hbp.mip.repositories; -import org.hbp.mip.model.Value; +import eu.hbp.mip.model.Value; import org.springframework.data.repository.CrudRepository; /** diff --git a/src/main/java/org/hbp/mip/repositories/VariableRepository.java b/src/main/java/eu/hbp/mip/repositories/VariableRepository.java similarity index 72% rename from src/main/java/org/hbp/mip/repositories/VariableRepository.java rename to src/main/java/eu/hbp/mip/repositories/VariableRepository.java index ac241ca7a16f06b75e7c2135724675bcafecefaa..3a4e7e2f582d0be33569093ef38c73f4dd28e906 100644 --- a/src/main/java/org/hbp/mip/repositories/VariableRepository.java +++ b/src/main/java/eu/hbp/mip/repositories/VariableRepository.java @@ -1,6 +1,6 @@ -package org.hbp.mip.repositories; +package eu.hbp.mip.repositories; -import org.hbp.mip.model.Variable; +import eu.hbp.mip.model.Variable; import org.springframework.data.repository.CrudRepository; /** diff --git a/src/main/java/org/hbp/mip/repositories/VoteRepository.java b/src/main/java/eu/hbp/mip/repositories/VoteRepository.java similarity index 64% rename from src/main/java/org/hbp/mip/repositories/VoteRepository.java rename to src/main/java/eu/hbp/mip/repositories/VoteRepository.java index 78d760b9cb998b65a444d3472bbf3326a3052979..30499e5511878169d4f76180afaacef74bdf52f6 100644 --- a/src/main/java/org/hbp/mip/repositories/VoteRepository.java +++ b/src/main/java/eu/hbp/mip/repositories/VoteRepository.java @@ -1,8 +1,8 @@ -package org.hbp.mip.repositories; +package eu.hbp.mip.repositories; -import org.hbp.mip.model.App; -import org.hbp.mip.model.User; -import org.hbp.mip.model.Vote; +import eu.hbp.mip.model.App; +import eu.hbp.mip.model.User; +import eu.hbp.mip.model.Vote; import org.springframework.data.repository.CrudRepository; /** diff --git a/src/main/java/org/hbp/mip/utils/CORSFilter.java b/src/main/java/eu/hbp/mip/utils/CORSFilter.java similarity index 97% rename from src/main/java/org/hbp/mip/utils/CORSFilter.java rename to src/main/java/eu/hbp/mip/utils/CORSFilter.java index 9feb2895dd7af50acfcb61e0e35810e3a71d2ebe..ef3b35353afdf70877318e706bc9f753f3687635 100644 --- a/src/main/java/org/hbp/mip/utils/CORSFilter.java +++ b/src/main/java/eu/hbp/mip/utils/CORSFilter.java @@ -1,4 +1,4 @@ -package org.hbp.mip.utils; +package eu.hbp.mip.utils; import javax.servlet.*; import javax.servlet.http.HttpServletResponse; diff --git a/src/main/java/org/hbp/mip/utils/CSVUtil.java b/src/main/java/eu/hbp/mip/utils/CSVUtil.java similarity index 97% rename from src/main/java/org/hbp/mip/utils/CSVUtil.java rename to src/main/java/eu/hbp/mip/utils/CSVUtil.java index a91d390ce42533abaef1f65f00aab7ca9e57a394..ce56b7935ed20426fe414ac50a2fd48625a5ea56 100644 --- a/src/main/java/org/hbp/mip/utils/CSVUtil.java +++ b/src/main/java/eu/hbp/mip/utils/CSVUtil.java @@ -1,10 +1,10 @@ -package org.hbp.mip.utils; +package eu.hbp.mip.utils; +import eu.hbp.mip.repositories.VariableRepository; import org.apache.log4j.Logger; -import org.hbp.mip.model.Dataset; -import org.hbp.mip.model.Query; -import org.hbp.mip.model.Variable; -import org.hbp.mip.repositories.VariableRepository; +import eu.hbp.mip.model.Dataset; +import eu.hbp.mip.model.Query; +import eu.hbp.mip.model.Variable; import org.springframework.beans.factory.annotation.Autowired; import java.io.BufferedReader; diff --git a/src/main/java/org/hbp/mip/utils/CustomLoginUrlAuthenticationEntryPoint.java b/src/main/java/eu/hbp/mip/utils/CustomLoginUrlAuthenticationEntryPoint.java similarity index 96% rename from src/main/java/org/hbp/mip/utils/CustomLoginUrlAuthenticationEntryPoint.java rename to src/main/java/eu/hbp/mip/utils/CustomLoginUrlAuthenticationEntryPoint.java index 437052aa882be5f901a312cd269b58578c2b4d0b..45870c7778280ff60c8ccca2908105ee677a6f7a 100644 --- a/src/main/java/org/hbp/mip/utils/CustomLoginUrlAuthenticationEntryPoint.java +++ b/src/main/java/eu/hbp/mip/utils/CustomLoginUrlAuthenticationEntryPoint.java @@ -1,4 +1,4 @@ -package org.hbp.mip.utils; +package eu.hbp.mip.utils; import org.springframework.security.core.AuthenticationException; import org.springframework.security.web.authentication.LoginUrlAuthenticationEntryPoint; diff --git a/src/main/java/org/hbp/mip/utils/HTTPUtil.java b/src/main/java/eu/hbp/mip/utils/HTTPUtil.java similarity index 98% rename from src/main/java/org/hbp/mip/utils/HTTPUtil.java rename to src/main/java/eu/hbp/mip/utils/HTTPUtil.java index 0a524bb99d7fa8403af05fb94fdfec0c1e9d9a25..c641826e8e2e8bddb7e544cc60fcebdd8fd1c600 100644 --- a/src/main/java/org/hbp/mip/utils/HTTPUtil.java +++ b/src/main/java/eu/hbp/mip/utils/HTTPUtil.java @@ -1,4 +1,4 @@ -package org.hbp.mip.utils; +package eu.hbp.mip.utils; import java.io.BufferedReader; import java.io.DataOutputStream; diff --git a/src/main/java/org/hbp/mip/utils/JSONUtil.java b/src/main/java/eu/hbp/mip/utils/JSONUtil.java similarity index 96% rename from src/main/java/org/hbp/mip/utils/JSONUtil.java rename to src/main/java/eu/hbp/mip/utils/JSONUtil.java index 938cfbb70a26974495782707d151089fad9b4d01..82e466be041011e1bdf240071be2921f98723dd5 100644 --- a/src/main/java/org/hbp/mip/utils/JSONUtil.java +++ b/src/main/java/eu/hbp/mip/utils/JSONUtil.java @@ -1,4 +1,4 @@ -package org.hbp.mip.utils; +package eu.hbp.mip.utils; import com.google.gson.JsonParseException; import com.google.gson.JsonParser; diff --git a/src/test/java/eu/hbp/mip/MIPApplicationTests.java b/src/test/java/eu/hbp/mip/MIPApplicationTests.java new file mode 100644 index 0000000000000000000000000000000000000000..be4ef7d964d76633806dcabe2cbe5f9ba32d9158 --- /dev/null +++ b/src/test/java/eu/hbp/mip/MIPApplicationTests.java @@ -0,0 +1,23 @@ +package eu.hbp.mip; + +import org.junit.Assert; +import org.junit.Test; +import org.junit.runner.RunWith; +import org.springframework.test.context.ContextConfiguration; +import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; +import org.springframework.test.context.support.GenericXmlContextLoader; + +@RunWith(SpringJUnit4ClassRunner.class) +@ContextConfiguration(loader = GenericXmlContextLoader.class) +public class MIPApplicationTests { + + @Test + public void testHello() + { + /* + * NO UNIT TEST NEEDED FOR THIS COMPONENT + */ + + Assert.assertNotNull("test"); + } +} diff --git a/src/test/java/org/hbp/mip/MIPApplicationTests.java b/src/test/java/org/hbp/mip/MIPApplicationTests.java deleted file mode 100644 index 3beac4281a34611ace1b20b0fcc9c4822afe96d3..0000000000000000000000000000000000000000 --- a/src/test/java/org/hbp/mip/MIPApplicationTests.java +++ /dev/null @@ -1,34 +0,0 @@ -/* - * Copyright 2012-2015 the original author or authors. - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ -package org.hbp.mip; - -import org.junit.Assert; -import org.junit.Test; -import org.junit.runner.RunWith; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.test.context.support.GenericXmlContextLoader; - -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(loader = GenericXmlContextLoader.class) -public class MIPApplicationTests { - - @Test - public void testHello() - { - Assert.assertNotNull("test"); - } -} diff --git a/tests/test-build.sh b/tests/test-build.sh index 39b78db4ea337b0a21e4212254df5917b733fb6d..89b65881e37e95fc3f2ec4507b22474a5659fc79 100755 --- a/tests/test-build.sh +++ b/tests/test-build.sh @@ -1,6 +1,6 @@ #!/usr/bin/env bash -if [ ! -f ./target/backend-services-DOCKER_BUILD.jar ]; then +if [ ! -f ./target/portal-backend-DOCKER_BUILD.jar ]; then exit 1 fi